RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8596
(237 letters)
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 72.9 bits (179), Expect = 5e-15
Identities = 38/228 (16%), Positives = 94/228 (41%), Gaps = 1/228 (0%)
Query: 9 EGALSSLEEAIGDKEKQMNQLREQRDRADQERQE-ERDLHERDIAEYKLKLHAYESEVEE 67
E L+ ++QM L EQ + + RQ+ + + D K++ E +
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 68 LELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTS 127
+L K + L++ +++ + A+ E + L++L+ ++E + ELE ++
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELE 1059
Query: 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE 187
+L+ + + QA++ ++A + E + ++E + K+
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 188 NTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQATL 235
+ + ++E+ E + ++ ++ E++ K ELE + T
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTT 1167
Score = 64.1 bits (156), Expect = 5e-12
Identities = 37/217 (17%), Positives = 81/217 (37%), Gaps = 5/217 (2%)
Query: 9 EGALSSLEEAIGDKEKQMNQLREQRDRADQERQE---ERDLHERDIAEYKLKLHAYESEV 65
E A L+ + ++ ++ + + + + ER L E +++ L E +
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027
Query: 66 EELELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLS 125
+ L K K + + +E+ E +RQ L +++ + E +L
Sbjct: 1028 KNLT--KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 126 TSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAK 185
A+L + +E+ A L ++ + S +QE +E + + + +
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145
Query: 186 LENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMD 222
+ E+E++K E E T T + R + D
Sbjct: 1146 KRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 61.4 bits (149), Expect = 4e-11
Identities = 37/239 (15%), Positives = 95/239 (39%), Gaps = 13/239 (5%)
Query: 9 EGALSSLEEAIGDKEKQMNQLREQRDRADQE----RQEERDLHERDIAEYKL--KLHAYE 62
+ EA + + + +E + + +EE + + K+ ++ E
Sbjct: 902 QAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLE 961
Query: 63 SEVEELELGKSKAELDKAA--NEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFG 120
++EE E + K +L+K ++ + D + ++L E + L+ + T
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 121 RTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVR----SEEKTMQEKVEKSQ 176
+ L +L+ K++ ++L + + + E+++ E + E++ + Q
Sbjct: 1022 EEE-EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 177 GEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQATL 235
++ LKA+L + E+++ E + L + + + +E+LE +A
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAAR 1139
Score = 55.2 bits (133), Expect = 5e-09
Identities = 31/208 (14%), Positives = 88/208 (42%), Gaps = 8/208 (3%)
Query: 22 KEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEELELGKSKAELDKAA 81
+ + Q + + + + E++ + E+++ + KL+ E + A+ +
Sbjct: 867 QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926
Query: 82 NEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTC 141
+ A E +R +L+ E ++++ ++ + A +LQ +
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE----AARQKLQLEKVTAD 982
Query: 142 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 201
+++ + ++ +++ N ++ E K ++E+V + + K + + +K ++E
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK----NLTKLKNKHE 1038
Query: 202 RTQGTLSRLLSERDKAVLEMDKSKEELE 229
L L + +K+ E++K K +LE
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLE 1066
Score = 46.8 bits (111), Expect = 3e-06
Identities = 29/176 (16%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 68 LELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTS 127
L++ + + E+ E+ R+ + A L LE ++ +L E Q +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL-QAETELY 908
Query: 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKS---QGEVYRLKA 184
AE + ++ + +L E+ R+ EE+ Q+ + Q ++ L+
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEM------EARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Query: 185 KLENTQGEMESMKEEYERTQGTLSRL---LSERDKAVLEMDKSKEELERSQATLGE 237
+LE + + ++ E G + ++ + + ++ K ++ LE + L
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018
Score = 37.1 bits (86), Expect = 0.004
Identities = 22/144 (15%), Positives = 61/144 (42%), Gaps = 4/144 (2%)
Query: 94 ARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRV 153
+++R E E + EL+R++ + AEL L++K+ + C + Q +L+
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKA----EAELKELEQKHTQLCEEKNLLQEKLQA 903
Query: 154 VQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSE 213
+ K ++ + ++ ++A++E + + ++ E ++ Q + L +
Sbjct: 904 ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963
Query: 214 RDKAVLEMDKSKEELERSQATLGE 237
++ K + E + + +
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKK 987
Score = 36.7 bits (85), Expect = 0.006
Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 9/128 (7%)
Query: 9 EGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL 68
EG S L E I + + Q+ +L+ Q + ++E Q E + ++ ++ EL
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKN----NALKKIREL 1121
Query: 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSA 128
E + + ++ A A ++ L E E LK ELE + T +
Sbjct: 1122 E-----SHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGS 1176
Query: 129 ELDRLQEK 136
+ +K
Sbjct: 1177 DYKDDDDK 1184
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 60.1 bits (146), Expect = 1e-10
Identities = 38/215 (17%), Positives = 77/215 (35%), Gaps = 8/215 (3%)
Query: 24 KQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEELELGKSKAELDKAANE 83
+ + RD + R R+ + L+ H + + ++ +
Sbjct: 830 VVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKA 889
Query: 84 VGRSGADWE--AARQRLSRLELENERLKHE------LERSQTTFGRTTLSTSAELDRLQE 135
+ + A++ L +L++E ++ LE R + E L E
Sbjct: 890 IVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949
Query: 136 KYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMES 195
K + +LR E K +V Q E+ +L+ +L TQ E ++
Sbjct: 950 KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009
Query: 196 MKEEYERTQGTLSRLLSERDKAVLEMDKSKEELER 230
++E ++ + +L+SE + + KEEL R
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Score = 58.2 bits (141), Expect = 4e-10
Identities = 34/225 (15%), Positives = 84/225 (37%), Gaps = 13/225 (5%)
Query: 22 KEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEELELGKSKAELDKAA 81
N+ + ++ Y L A +K EL K
Sbjct: 851 GYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLK 910
Query: 82 NEVGRSGADWEA----------ARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELD 131
E + ++++ E + L ++ + T+ T ++++
Sbjct: 911 IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970
Query: 132 RLQ---EKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 188
RL+ E+ + Q E+ ++ + + ++E+KT++E +K + E +L ++L+
Sbjct: 971 RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030
Query: 189 TQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQA 233
+++ KEE R ++ ++E + L + + EL+ +
Sbjct: 1031 QNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
Score = 49.3 bits (118), Expect = 4e-07
Identities = 28/188 (14%), Positives = 71/188 (37%), Gaps = 22/188 (11%)
Query: 14 SLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEELELGKS 73
S+E N++ + + + D++ +E + L E+ L E +L
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK-----MNNLEI-TYSTETEKLRSD 968
Query: 74 KAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRL 133
L + E + + ++ +++L E + + E + + + E ++L
Sbjct: 969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK----HETEQL 1024
Query: 134 QEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEM 193
+ + L+ + EL N R+ + K + E +EK +L + + + ++
Sbjct: 1025 VSELKEQNTLLKTEKEEL------NRRIHDQAKEITETMEK------KLVEETKQLELDL 1072
Query: 194 ESMKEEYE 201
+ Y+
Sbjct: 1073 NDERLRYQ 1080
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 6e-05
Identities = 35/254 (13%), Positives = 76/254 (29%), Gaps = 73/254 (28%)
Query: 43 ERDLHERDIAE-----YKLKLHAYESEVEELELGK-SKAELDKAANEVGRSGADWEAARQ 96
E +DI + + V+++ SK E+D + S +
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKD--VQDMPKSILSKEEID----HIIMSKDAVSGTLR 66
Query: 97 RLSRLELENERLKHE-------------LERSQTTFGRTTLST---SAELDRLQ------ 134
L + E + + + +T + ++ T + DRL
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 135 EKYD----KTCADLRRAQAELR-----VVQ--------------ADNERVR--------- 162
KY+ + LR+A ELR ++ + +V+
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 163 ---SEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERD--KA 217
+ + +E Q +Y++ + ++K Q L RLL +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 218 VLEMD--KSKEELE 229
+L + ++ +
Sbjct: 247 LLVLLNVQNAKAWN 260
Score = 34.1 bits (77), Expect = 0.040
Identities = 25/182 (13%), Positives = 46/182 (25%), Gaps = 55/182 (30%)
Query: 8 SEGALSSL--EEAIGDKEKQMNQLRE----QRDRAD-------------QERQEERDLHE 48
LS + + D +N+L + ++ + + + E LH
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 49 RDIAEYKLKL----------------------HAYESEVEELELGKSKAELDKA--ANEV 84
+ Y + H E E LD ++
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 85 GRSGADWEAARQR---LSRLEL------ENERLKHELERSQTTFGR---TTLSTSAELDR 132
W A+ L +L+ +N+ L + F L S D
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 133 LQ 134
L+
Sbjct: 568 LR 569
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 36.6 bits (85), Expect = 0.005
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 10/104 (9%)
Query: 75 AELDKA--ANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDR 132
+D N++ A R + + E E + + R Q +S
Sbjct: 60 GVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVS------- 112
Query: 133 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ 176
Q+ D ++ QA++ + A +R ++ T + ++ ++
Sbjct: 113 -QQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTR 155
Score = 31.6 bits (72), Expect = 0.20
Identities = 12/74 (16%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 167 TMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQ-----GTLSRLLSERDKAVLEM 221
+ ++++ + + L+A+ + + E++ + Y R Q +S+ + D A EM
Sbjct: 66 QAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQ--QDLDNAATEM 123
Query: 222 DKSKEELERSQATL 235
+ ++ A +
Sbjct: 124 AVKQAQIGTIDAQI 137
Score = 29.6 bits (67), Expect = 0.85
Identities = 10/85 (11%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRS---EEKTMQEKVEKSQGEVYRLKA 184
++ ++ + A ++A+AEL++ + R + + Q+ ++ + E+ +A
Sbjct: 69 NQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQA 128
Query: 185 KLENTQGEMESMKEEYERTQGTLSR 209
++ +++ + + + L
Sbjct: 129 QIGTIDAQIKRNQASLDTAKTNLDY 153
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 35.9 bits (83), Expect = 0.008
Identities = 19/104 (18%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 75 AELDKA--ANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDR 132
AE+D N + A + + +L + + +R +G+ S
Sbjct: 61 AEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATS------- 113
Query: 133 LQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ 176
+ + A L A+AE+ VVQ + ++ E T + + ++
Sbjct: 114 -LDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTK 156
Score = 33.2 bits (76), Expect = 0.054
Identities = 10/74 (13%), Positives = 25/74 (33%), Gaps = 7/74 (9%)
Query: 167 TMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQ-----GTLSRLLSERDKAVLEM 221
T + + + +A+L + + Y+R S + A +
Sbjct: 67 TQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSL--DTLNTAKATL 124
Query: 222 DKSKEELERSQATL 235
+ +K E++ Q +
Sbjct: 125 NNAKAEMDVVQENI 138
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.021
Identities = 30/162 (18%), Positives = 55/162 (33%), Gaps = 51/162 (31%)
Query: 87 SGAD-WEAARQRLSR-LELENERLKHEL----ERSQTTFGRTTLSTSAELDRLQEKYDK- 139
+ D WE+ + + + + L R + T+L S D L+
Sbjct: 284 AETDSWESFFVSVRKAITV--------LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP 335
Query: 140 ----TCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQ----- 190
+ ++L + Q + V N + + ++VE S L N
Sbjct: 336 SPMLSISNLTQEQVQ-DYVNKTNSHLPAG-----KQVEIS----------LVNGAKNLVV 379
Query: 191 -GEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEEL-ER 230
G +S+ G L+ L + KA +D+S+ ER
Sbjct: 380 SGPPQSL-------YG-LNLTL-RKAKAPSGLDQSRIPFSER 412
Score = 32.3 bits (73), Expect = 0.16
Identities = 49/290 (16%), Positives = 86/290 (29%), Gaps = 128/290 (44%)
Query: 30 REQRDRADQERQE---------------ERDLHE-----RDIAEYKLKLHAYESEVEELE 69
++ +RAD ++ +H + I E + +E+ V+
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM-IFETIVD--- 1698
Query: 70 LGKSKAE-LDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTT----L 124
GK K E + K NE S + + E L S T F T
Sbjct: 1699 -GKLKTEKIFKEINEHSTS-YTFRS----------EKGLL------SATQF---TQPALT 1737
Query: 125 STS-AELDRLQEK----YDKTCA--------------------DL-----RRAQAELRVV 154
A + L+ K D T A L R V
Sbjct: 1738 LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAV 1797
Query: 155 QADNE-------------RVR---SEE--KTMQEKVEKSQGEV-----YRLKAKLENTQ- 190
D RV S+E + + E+V K G + Y +EN Q
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY----NVENQQY 1853
Query: 191 ---GEMESMKEEYERTQGTLSRLLSE-RDKAV--------LEMDKSKEEL 228
G++ ++ T++ +L+ + + + L +++ + L
Sbjct: 1854 VAAGDLRALD--------TVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.033
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 10/40 (25%)
Query: 39 ERQEERDLHERDIAEYKLKLHAYESEVEELELGKSKAELD 78
E+Q + L + LKL+A +S L + KA ++
Sbjct: 18 EKQALKKL------QASLKLYADDS-APALAI---KATME 47
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 34.0 bits (76), Expect = 0.042
Identities = 21/180 (11%), Positives = 62/180 (34%), Gaps = 2/180 (1%)
Query: 55 KLKLHAYESEVEELELGKSKAELDKAANEVGRSGADWEAARQRLSRLELE--NERLKHEL 112
+ + + + G + +E R + L + E K
Sbjct: 61 EWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAF 120
Query: 113 ERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKV 172
+ + T + Q+ + K ++ A+ + + S E +
Sbjct: 121 HKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADP 180
Query: 173 EKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLEMDKSKEELERSQ 232
+ ++ +L+ K+E + ++ KE+YE++ L + + + + ++ + ++ E +
Sbjct: 181 SLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKR 240
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE);
structural genomics, PSI-2, protein structure
initiative; 2.80A {Cupriavidus metallidurans}
Length = 359
Score = 32.4 bits (74), Expect = 0.10
Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 89 ADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQ 148
AD A ++ + L+R + + + ++ Q YD+ ++ +RA
Sbjct: 91 ADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAA-KRDFEQAQSDYDQAASESQRAD 149
Query: 149 AELRVVQADNERVRSEEKTMQEKV 172
A L + A V
Sbjct: 150 ARLAQLGAKGGGTLQAGGGHILAV 173
Score = 27.8 bits (62), Expect = 3.4
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 73 SKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTT 118
+K + ++A ++ ++ ++ + A RL++L +
Sbjct: 127 AKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGHILA 172
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 32.1 bits (73), Expect = 0.16
Identities = 8/78 (10%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 159 ERVRSEEKTMQEKVEKSQGEVYRLK---AKLENTQGEMESMKEEYERTQGTLSRLLSERD 215
+ +R+ K + K + Q + KL + ++ + + + + L E++
Sbjct: 1850 DGLRALVKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISL--VKSLTFEKE 1907
Query: 216 KAVLEMDKSKEELERSQA 233
+ + + + +
Sbjct: 1908 RWLNTTKQFSKTSQELIG 1925
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell
WALL, AG I/II protei surface adhesin,
peptidoglycan-anchor; 2.30A {Streptococcus gordonii}
Length = 349
Score = 30.5 bits (68), Expect = 0.47
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 48 ERDIAEYKLKLHAYESEVEELELGKSKAELDKAANEVG 85
E +A+Y+ L Y+ E + AE + + G
Sbjct: 1 EAKLAKYEADLAKYKKEFAAYT--AALAEAESKKKQDG 36
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 30.2 bits (67), Expect = 0.60
Identities = 25/153 (16%), Positives = 44/153 (28%), Gaps = 4/153 (2%)
Query: 22 KEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEELELGKSKAELDKAA 81
K Q EQ R ERQ+ D E + A +L S E +A
Sbjct: 672 AAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAE 731
Query: 82 NEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTC 141
A+ + L +E E +++ + L + L+ +
Sbjct: 732 AARIEGEGSVLQAKLKAQALAIETEAELERVKKVR----EMELIYARAQLELEVSKAQQL 787
Query: 142 ADLRRAQAELRVVQADNERVRSEEKTMQEKVEK 174
A++ + + +R E K
Sbjct: 788 ANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A
3ow7_A 3h9i_A 3h94_A 3h9t_B
Length = 413
Score = 30.2 bits (68), Expect = 0.68
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTL 124
+ ++++E E G + E +RL + ++ L +Q R TL
Sbjct: 157 DWVEAQSEY-LLLRETGGTATQTEGILERLRLAGMPEADIR-RLIATQKIQTRFTL 210
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 29.9 bits (65), Expect = 0.77
Identities = 28/182 (15%), Positives = 58/182 (31%), Gaps = 2/182 (1%)
Query: 9 EGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEEL 68
A ++L +K+ + + + Q + +++D+A+Y +KL AYE E +
Sbjct: 40 NAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSI 99
Query: 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSA 128
+ + AEL+K NE G + +++
Sbjct: 100 K--AALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKASAVDDAFSKSTS 157
Query: 129 ELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLEN 188
+ Q+ D+ + V + +K + +V LE
Sbjct: 158 KAKYDQKILQLDDLDITNLEQSNDVASSMELYGNFGDKAGWSTTVSNNSQVKWGSVLLER 217
Query: 189 TQ 190
Q
Sbjct: 218 GQ 219
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.4 bits (65), Expect = 0.84
Identities = 15/138 (10%), Positives = 53/138 (38%)
Query: 92 EAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAEL 151
+ + + + + + E + + Q+ + K A + +A+A+
Sbjct: 85 KIKDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADY 144
Query: 152 RVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLL 211
++E+ S +V ++ +++ T+ +++ +E+YE+ +++
Sbjct: 145 HSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYN 204
Query: 212 SERDKAVLEMDKSKEELE 229
S + + + + + E
Sbjct: 205 SVYIEDMTSVFEKCQTFE 222
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.9 bits (67), Expect = 0.86
Identities = 11/78 (14%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 159 ERVRSEEKTMQEKVEKSQGEVYRLKA---KLENTQGEMESMKEEYERTQGTLSRLLSERD 215
+ + + EK ++ + E L KL +T+ +++ ++ + L + +
Sbjct: 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN 1958
Query: 216 KAVLEMDKSKEELERSQA 233
+ + +M + ++ E Q
Sbjct: 1959 QKLKQMVQDQQAAEIKQK 1976
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.92
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 22 KEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEELELGKSKAELDKAA 81
+E+Q +L+E + QE R+ ++D+ E+ + + E++E K+K A
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEW------NQRQSEQVE--KNKINNRIAD 142
Query: 82 NE 83
Sbjct: 143 KA 144
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 29.0 bits (64), Expect = 1.3
Identities = 28/213 (13%), Positives = 64/213 (30%), Gaps = 21/213 (9%)
Query: 8 SEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVEE 67
+ + ++ + ++ +LR + E ++ + E I +Y+
Sbjct: 3 AGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQ------------ 50
Query: 68 LELGKSKAELDKAANEVGRSGADWE-AARQRLSRLELENERLKHELERSQTTFGRTTLST 126
E + +A+ + + E A +Q+ LE +R L++ + T
Sbjct: 51 -ESLRIQAQFAQLGQLNPQERMSRETALQQKQVSLETWLQREAQTLQQYRVELAEKHQKT 109
Query: 127 SAELDRLQEK-YDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQ------GEV 179
L + Q D +R Q + + ++ E
Sbjct: 110 LQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIWQNRQQIRRA 169
Query: 180 YRLKAKLENTQGEMESMKEEYERTQGTLSRLLS 212
L +L E + E +S L++
Sbjct: 170 EHLCQQLPIPGPVEEMLAEVNATITDIISALVT 202
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain,
beta barrel, transport prote; 2.71A {Escherichia coli}
Length = 277
Score = 27.9 bits (63), Expect = 2.3
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 22/89 (24%)
Query: 74 KAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRL 133
+A D A ++ ++ A A+ + R Q G +S
Sbjct: 59 QATYDSAKGDLAKAQAAANIAQL--------------TVNRYQKLLGTQYIS-------- 96
Query: 134 QEKYDKTCADLRRAQAELRVVQADNERVR 162
+++YD+ AD ++A A + +A E R
Sbjct: 97 KQEYDQALADAQQANAAVTAAKAAVETAR 125
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 28.4 bits (64), Expect = 2.6
Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 146 RAQAELRVVQADNERVRSEEKTMQE-KVEKSQGEVYRLKAKLENTQGEMESMKEE 199
A + LRVV + +++ K++ + V +KA +T G +E++ +
Sbjct: 319 MAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVV-VKA---DTLGSLEAVVKI 369
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.3 bits (64), Expect = 2.9
Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 28/105 (26%)
Query: 97 RLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQA 156
+ +LE+E E LK E +RL + + A L A+LR +
Sbjct: 409 KKLQLEIEREALKKE-------------KDPDSQERL-KAIEAEIAKLTEEIAKLR-AEW 453
Query: 157 DNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYE 201
+ ER E + K + + +L+ + E+E + +Y+
Sbjct: 454 ERER---------EILRKLR----EAQHRLDEVRREIELAERQYD 485
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 28.1 bits (62), Expect = 3.1
Identities = 14/83 (16%), Positives = 29/83 (34%)
Query: 69 ELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSA 128
+L + + A ++G + + A + +E+L EL R +
Sbjct: 875 KLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDD 934
Query: 129 ELDRLQEKYDKTCADLRRAQAEL 151
EL ++ + L +A L
Sbjct: 935 ELTAIESNRQQVMESLDQAGWRL 957
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.0 bits (61), Expect = 3.6
Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 3/199 (1%)
Query: 1 MQAHHCSSEGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHA 60
+ H SE + K+ +E + +++R + ++ ++ L
Sbjct: 353 LLDLHRDSEREAIEVFIRSSFKDVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQ 412
Query: 61 YESEVEELELGKSKAELDKAANEVGRSGADWEAARQRLSRLELENERLKHELERSQTTFG 120
E E+ + D + R ++ E + +S+ +
Sbjct: 413 VIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMT 472
Query: 121 RTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVY 180
L T L +++ + AQA +++ E R E+ M++K Q +
Sbjct: 473 DAILQTDQTLTEKEKEIEVERVKAESAQASAKMLH---EMQRKNEQMMEQKERSYQEHLK 529
Query: 181 RLKAKLENTQGEMESMKEE 199
+L K+EN + ++ +E
Sbjct: 530 QLTEKMENDRVQLLKEQER 548
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 27.4 bits (61), Expect = 4.1
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 92 EAARQRLSRLELENERLKHELERSQT 117
++ L+ EN+ LK L+ + +
Sbjct: 39 AQLESEVADLKKENKDLKESLDITDS 64
Score = 27.0 bits (60), Expect = 5.5
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 6/59 (10%)
Query: 98 LSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQA 156
L EN+ LK LE E L+E D+ + + + A
Sbjct: 21 LKNTYTENQHLKERLEELAQLESE-VADLKKENKDLKESL-----DITDSIRDYDPLNA 73
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 27.5 bits (60), Expect = 4.5
Identities = 18/139 (12%), Positives = 50/139 (35%)
Query: 93 AARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELR 152
A E K + + T + Q+ + K ++ A+
Sbjct: 108 KASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHH 167
Query: 153 VVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLS 212
+ + S E + + ++ +L+ K+E + ++ KE+YE++ L +
Sbjct: 168 AACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP 227
Query: 213 ERDKAVLEMDKSKEELERS 231
+ + + ++ + ++ E
Sbjct: 228 QYMENMEQVFEQCQQFEEK 246
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET:
ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
2yl8_A* 3rpm_A*
Length = 434
Score = 27.5 bits (61), Expect = 4.6
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 80 AANEVGRSGADWEAARQRLSRLELENERLKHE-LERSQTTFGRTTLSTSAELDRLQEKYD 138
A AD+E+A Q L+ + + R E + + S Q+ D
Sbjct: 358 ANANAEYFAADYESAEQALNEVPKDLNRYTAESVTAVKEAEKAIRSLDSNLSRAQQDTID 417
Query: 139 KTCADLRRAQAEL 151
+ A L+ L
Sbjct: 418 QAIAKLQETVNNL 430
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 27.2 bits (60), Expect = 5.0
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 9 EGALSSLEEAIGDKEKQMNQLREQRDRADQERQEERDLHERDIAEYKLKLHAYESEVE 66
A++S + + +++ QM +L + ER + EY+ K+ A ++ +E
Sbjct: 152 NKAVTSYNKILTEEDLQMRRLATALQKEIGERTHA---ETVMVKEYRDKIDALKNAIE 206
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 27.2 bits (59), Expect = 5.1
Identities = 18/139 (12%), Positives = 50/139 (35%)
Query: 93 AARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELR 152
A E K + + T + Q+ + K ++ A+
Sbjct: 108 KASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHH 167
Query: 153 VVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLS 212
+ + S E + + ++ +L+ K+E + ++ KE+YE++ L +
Sbjct: 168 AACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTP 227
Query: 213 ERDKAVLEMDKSKEELERS 231
+ + + ++ + ++ E
Sbjct: 228 QYMENMEQVFEQCQQFEEK 246
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 27.1 bits (59), Expect = 6.0
Identities = 22/131 (16%), Positives = 51/131 (38%)
Query: 101 LELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQAELRVVQADNER 160
E + R R + + + Q+ + K ++ ++ + D +
Sbjct: 107 SERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKT 166
Query: 161 VRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLSRLLSERDKAVLE 220
++ E + SQ ++ +L+ ++ E E MK +YE+T L+R + + +
Sbjct: 167 AQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQ 226
Query: 221 MDKSKEELERS 231
+S + ER
Sbjct: 227 AFESCQAAERQ 237
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
structural genomics, unknown function; 1.50A
{Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Length = 298
Score = 26.7 bits (60), Expect = 6.3
Identities = 7/29 (24%), Positives = 9/29 (31%)
Query: 126 TSAELDRLQEKYDKTCADLRRAQAELRVV 154
T A + + YD C L V
Sbjct: 104 TRARIQSIGGIYDGHCRVLHHGPDNAAVR 132
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR
adaptor; 1.91A {Homo sapiens}
Length = 237
Score = 26.7 bits (58), Expect = 7.0
Identities = 19/146 (13%), Positives = 55/146 (37%), Gaps = 3/146 (2%)
Query: 89 ADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDRLQEKYDKTCADLRRAQ 148
+E + + + E +L +L+ + S+ + LQE Y +
Sbjct: 33 ERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELK 92
Query: 149 AELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYERTQGTLS 208
A +V ++ E+ + ++ ++ ++++ + +Y+ + L
Sbjct: 93 A---IVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLE 149
Query: 209 RLLSERDKAVLEMDKSKEELERSQAT 234
+ + + K + K++EE ++Q
Sbjct: 150 AVQNAKKKDEAKTAKAEEEFNKAQTV 175
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 26.8 bits (59), Expect = 7.8
Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 83 EVGRSG--ADWEAARQRLSRLELENERLKHELERSQTTFGRTTLSTSAELDR-LQEKYDK 139
+ + A++ A R+ L+++ E E S + + L+R Q + D
Sbjct: 351 DHNKDYFRANYNALREELAKIPTNLEGYSKE---SLEALDAAKTALNYNLNRNKQAELDT 407
Query: 140 TCADLRRAQAELRVVQADNERV 161
A+L+ A L+ + +
Sbjct: 408 LVANLKAALQGLKPAVTHSGSL 429
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 26.7 bits (58), Expect = 7.9
Identities = 14/93 (15%), Positives = 34/93 (36%)
Query: 143 DLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLENTQGEMESMKEEYER 202
L + ++R D E+ + +Q+ + + + + +++ ++
Sbjct: 17 MLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQ 76
Query: 203 TQGTLSRLLSERDKAVLEMDKSKEELERSQATL 235
+ L+ L R V E+ +E Q TL
Sbjct: 77 LEQMLTALDQMRRSIVSELAGLLSAMEYVQKTL 109
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 26.8 bits (60), Expect = 8.2
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 16/77 (20%)
Query: 127 SAELDRLQEKYDKTCADLRRAQAELRVVQADNER-VRSEEKTMQEKVEKSQGEVYRLKAK 185
R +++ + A R+Q +L + EK +E VE +A+
Sbjct: 799 EEWRRRQEKRLKELLALAERSQRKL-----ASPGFR---EKAPKEVVEAE-------EAR 843
Query: 186 LENTQGEMESMKEEYER 202
L+ + E ++E +
Sbjct: 844 LKENLEQAERIREALSQ 860
Score = 26.8 bits (60), Expect = 8.8
Identities = 13/97 (13%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 128 AELDRLQEKYDKTCADLRRAQAELRVVQADNERVRSEEKTMQEKVEKSQGEVYRLKAKLE 187
+ D L E+ + R+ V + ++++++ R + KL
Sbjct: 766 SRADLLPER-PAKALVKAMPRVTARMPLEGLLDVEEWRRRQEKRLKELLALAERSQRKLA 824
Query: 188 N--------------TQGEMESMKEEYERTQGTLSRL 210
+ + ++ E+ ER + LS++
Sbjct: 825 SPGFREKAPKEVVEAEEARLKENLEQAERIREALSQI 861
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.305 0.122 0.311
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,281,372
Number of extensions: 189286
Number of successful extensions: 949
Number of sequences better than 10.0: 1
Number of HSP's gapped: 805
Number of HSP's successfully gapped: 328
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 56 (25.2 bits)