RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8596
         (237 letters)



>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
          PAC) {Streptococcus mutans [TaxId: 1309]}
          Length = 377

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)

Query: 48 ERDIAEYKLKLHAYESEVEELELGKSKAELDKAANEVG 85
          ++D+A+Y +KL AYE E   ++   + AEL+K  NE G
Sbjct: 1  QKDLADYPVKLKAYEDEQASIK--AALAELEKHKNEDG 36


>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas
          aeruginosa [TaxId: 287]}
          Length = 246

 Score = 28.3 bits (62), Expect = 0.72
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 58 LHAYESEVEELELGKSKAELDKAANEVGRSGADW 91
          LHAY    +EL  G     +D+AA ++ R  A W
Sbjct: 13 LHAYARGGDELVNGHPSYTVDQAAEQILREQASW 46


>d1t8sa_ c.56.2.1 (A:) AMP nucleosidase {Escherichia coli [TaxId:
           562]}
          Length = 477

 Score = 26.5 bits (58), Expect = 3.8
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 124 LSTSAELDRLQEKYDKTCADLRRA-QAELRVVQADNERVR 162
           L+ +  LD+L   Y+++   LR A    +   +  +E  R
Sbjct: 1   LTPAQALDKLDALYEQSVVALRNAIGNYITSGELPDENAR 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.305    0.122    0.311 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 748,108
Number of extensions: 32179
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 163
Number of HSP's successfully gapped: 68
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 51 (23.6 bits)