Query psy860
Match_columns 178
No_of_seqs 256 out of 2185
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:56:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1126 GlnQ ABC-type polar am 100.0 2.8E-51 6E-56 316.4 7.2 159 7-176 9-171 (240)
2 COG1135 AbcC ABC-type metal io 100.0 9.3E-48 2E-52 310.0 5.8 162 5-177 10-177 (339)
3 COG1116 TauB ABC-type nitrate/ 100.0 2.2E-46 4.8E-51 295.2 5.2 154 10-177 13-166 (248)
4 COG1125 OpuBA ABC-type proline 100.0 4.1E-46 8.9E-51 293.7 5.7 160 7-177 8-171 (309)
5 COG1136 SalX ABC-type antimicr 100.0 9.9E-45 2.2E-49 284.6 8.7 161 6-177 11-178 (226)
6 COG3839 MalK ABC-type sugar tr 100.0 2.7E-45 5.8E-50 302.8 5.7 158 9-177 12-169 (338)
7 COG3842 PotA ABC-type spermidi 100.0 3.8E-45 8.3E-50 303.3 5.7 159 7-176 12-171 (352)
8 COG1127 Ttg2A ABC-type transpo 100.0 1.6E-44 3.4E-49 282.6 6.8 160 7-177 15-181 (263)
9 COG2884 FtsE Predicted ATPase 100.0 2.8E-44 6.2E-49 272.5 6.2 158 5-176 10-172 (223)
10 COG1120 FepC ABC-type cobalami 100.0 6.5E-44 1.4E-48 284.9 5.6 155 12-177 14-174 (258)
11 COG3638 ABC-type phosphate/pho 100.0 1.1E-43 2.3E-48 277.2 5.7 156 11-177 15-183 (258)
12 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.6E-43 7.7E-48 279.6 6.7 152 14-177 18-175 (254)
13 COG1117 PstB ABC-type phosphat 100.0 1E-42 2.2E-47 268.4 7.6 156 10-177 17-185 (253)
14 COG1131 CcmA ABC-type multidru 100.0 1E-42 2.2E-47 285.3 8.0 160 7-177 11-172 (293)
15 COG1122 CbiO ABC-type cobalt t 100.0 5.1E-43 1.1E-47 278.2 3.8 160 4-177 11-174 (235)
16 COG4555 NatA ABC-type Na+ tran 100.0 7.7E-43 1.7E-47 267.0 3.9 154 13-177 15-169 (245)
17 COG1118 CysA ABC-type sulfate/ 100.0 2.3E-42 4.9E-47 278.5 5.1 160 7-177 9-173 (345)
18 TIGR02314 ABC_MetN D-methionin 100.0 4.7E-42 1E-46 286.6 6.9 154 13-177 18-176 (343)
19 PRK11650 ugpC glycerol-3-phosp 100.0 9.5E-42 2E-46 286.3 6.6 155 12-177 16-170 (356)
20 PRK11432 fbpC ferric transport 100.0 2.4E-41 5.2E-46 283.3 6.6 155 12-177 18-172 (351)
21 PRK13537 nodulation ABC transp 100.0 3.8E-41 8.3E-46 277.6 7.7 156 11-177 18-174 (306)
22 TIGR01186 proV glycine betaine 100.0 3E-41 6.4E-46 283.5 7.1 157 10-177 3-165 (363)
23 TIGR03265 PhnT2 putative 2-ami 100.0 2.7E-41 5.9E-46 283.2 6.4 156 11-177 15-170 (353)
24 COG4175 ProV ABC-type proline/ 100.0 1.6E-41 3.5E-46 274.5 4.4 160 7-177 35-200 (386)
25 TIGR01188 drrA daunorubicin re 100.0 8.4E-41 1.8E-45 275.0 7.5 156 11-177 4-160 (302)
26 TIGR03258 PhnT 2-aminoethylpho 100.0 6E-41 1.3E-45 281.8 6.4 154 13-177 18-173 (362)
27 COG1137 YhbG ABC-type (unclass 100.0 5.3E-41 1.1E-45 256.6 5.0 159 7-176 11-174 (243)
28 TIGR00960 3a0501s02 Type II (G 100.0 2E-40 4.4E-45 260.2 6.6 154 13-177 16-174 (216)
29 PRK11607 potG putrescine trans 100.0 2E-40 4.3E-45 280.0 7.0 155 12-177 31-185 (377)
30 cd03259 ABC_Carb_Solutes_like 100.0 1.9E-40 4.2E-45 259.8 6.3 154 13-177 13-166 (213)
31 COG1124 DppF ABC-type dipeptid 100.0 1.1E-40 2.5E-45 261.4 5.0 160 5-177 12-177 (252)
32 PRK09452 potA putrescine/sperm 100.0 1.9E-40 4.2E-45 279.8 6.5 154 13-177 27-180 (375)
33 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.1E-40 4.5E-45 260.3 6.0 154 13-177 17-176 (218)
34 PRK10851 sulfate/thiosulfate t 100.0 2.8E-40 6.2E-45 277.0 6.2 156 11-177 13-172 (353)
35 PRK11000 maltose/maltodextrin 100.0 3.2E-40 7E-45 278.3 6.4 154 13-177 16-169 (369)
36 PRK13536 nodulation factor exp 100.0 6.3E-40 1.4E-44 273.7 7.9 156 11-177 52-208 (340)
37 cd03261 ABC_Org_Solvent_Resist 100.0 6.6E-40 1.4E-44 260.4 7.2 154 13-177 13-172 (235)
38 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.5E-40 1.4E-44 258.1 6.9 151 13-177 17-167 (220)
39 PRK11153 metN DL-methionine tr 100.0 6.6E-40 1.4E-44 274.0 7.2 154 13-177 18-176 (343)
40 cd03266 ABC_NatA_sodium_export 100.0 8.1E-40 1.8E-44 257.0 6.6 153 14-177 19-172 (218)
41 PRK11629 lolD lipoprotein tran 100.0 9.2E-40 2E-44 259.4 6.8 154 13-177 22-181 (233)
42 COG4598 HisP ABC-type histidin 100.0 3.9E-40 8.5E-45 248.8 4.3 160 5-175 11-186 (256)
43 cd03301 ABC_MalK_N The N-termi 100.0 8.2E-40 1.8E-44 256.1 6.2 154 13-177 13-166 (213)
44 TIGR03522 GldA_ABC_ATP gliding 100.0 1.3E-39 2.9E-44 267.8 7.4 155 12-177 14-169 (301)
45 cd03265 ABC_DrrA DrrA is the A 100.0 1.7E-39 3.6E-44 255.8 7.6 154 13-177 13-167 (220)
46 TIGR02673 FtsE cell division A 100.0 1.6E-39 3.4E-44 254.7 6.8 154 13-177 15-173 (214)
47 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-39 3.1E-44 256.0 6.5 154 13-177 18-177 (221)
48 TIGR01288 nodI ATP-binding ABC 100.0 1.9E-39 4.2E-44 267.1 7.4 155 12-177 16-171 (303)
49 COG4181 Predicted ABC-type tra 100.0 3E-39 6.5E-44 242.0 7.4 159 7-176 17-181 (228)
50 cd03292 ABC_FtsE_transporter F 100.0 1.8E-39 3.9E-44 254.2 6.5 154 13-177 14-172 (214)
51 PRK10070 glycine betaine trans 100.0 2.2E-39 4.8E-44 275.1 7.5 159 8-177 36-200 (400)
52 COG0410 LivF ABC-type branched 100.0 2.3E-39 4.9E-44 252.4 6.9 155 9-175 12-170 (237)
53 PRK13637 cbiO cobalt transport 100.0 3E-39 6.5E-44 264.1 7.3 154 13-177 20-180 (287)
54 COG4152 ABC-type uncharacteriz 100.0 1.8E-39 3.9E-44 254.7 5.3 158 7-177 9-166 (300)
55 cd03269 ABC_putative_ATPase Th 100.0 4E-39 8.7E-44 251.8 7.1 152 13-177 13-164 (210)
56 PRK10908 cell division protein 100.0 3.6E-39 7.9E-44 254.2 6.7 154 13-177 15-173 (222)
57 TIGR01166 cbiO cobalt transpor 100.0 4.9E-39 1.1E-43 247.9 7.2 154 13-177 5-163 (190)
58 cd03263 ABC_subfamily_A The AB 100.0 5.4E-39 1.2E-43 252.6 7.5 154 13-177 15-169 (220)
59 cd03296 ABC_CysA_sulfate_impor 100.0 3.1E-39 6.7E-44 257.3 6.0 154 13-177 15-172 (239)
60 cd03225 ABC_cobalt_CbiO_domain 100.0 5.9E-39 1.3E-43 250.9 7.3 154 13-177 14-170 (211)
61 cd03268 ABC_BcrA_bacitracin_re 100.0 7.9E-39 1.7E-43 249.8 7.8 150 13-177 13-162 (208)
62 cd03226 ABC_cobalt_CbiO_domain 100.0 6E-39 1.3E-43 250.1 6.7 149 13-177 13-162 (205)
63 TIGR03415 ABC_choXWV_ATP choli 100.0 7.5E-39 1.6E-43 270.3 7.6 160 7-177 31-200 (382)
64 cd03258 ABC_MetN_methionine_tr 100.0 8.3E-39 1.8E-43 253.7 7.1 153 14-177 19-176 (233)
65 TIGR03608 L_ocin_972_ABC putat 100.0 8.6E-39 1.9E-43 249.0 7.0 154 13-177 11-170 (206)
66 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.1E-38 2.4E-43 258.5 7.6 157 10-177 34-196 (269)
67 cd03218 ABC_YhbG The ABC trans 100.0 1.3E-38 2.8E-43 252.3 7.4 154 13-177 13-169 (232)
68 COG0411 LivG ABC-type branched 100.0 9.2E-39 2E-43 250.7 6.2 160 6-176 10-184 (250)
69 cd03256 ABC_PhnC_transporter A 100.0 2.2E-38 4.9E-43 252.1 8.0 154 13-177 14-180 (241)
70 cd03264 ABC_drug_resistance_li 100.0 1.5E-38 3.2E-43 248.8 6.6 153 13-177 13-166 (211)
71 cd03219 ABC_Mj1267_LivG_branch 100.0 1.4E-38 3.1E-43 252.6 6.6 154 13-177 13-179 (236)
72 PRK10584 putative ABC transpor 100.0 1.4E-38 3.1E-43 251.6 6.5 153 14-177 24-182 (228)
73 PRK13634 cbiO cobalt transport 100.0 1.4E-38 2.9E-43 260.6 6.3 153 13-177 20-181 (290)
74 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.6E-38 5.6E-43 252.4 7.6 154 13-177 14-171 (242)
75 PRK13647 cbiO cobalt transport 100.0 1.4E-38 3.1E-43 258.6 6.1 154 13-177 18-174 (274)
76 cd03260 ABC_PstB_phosphate_tra 100.0 2.5E-38 5.5E-43 250.0 7.3 153 13-177 13-177 (227)
77 cd03262 ABC_HisP_GlnQ_permease 100.0 2.3E-38 5E-43 247.8 7.0 154 13-177 13-171 (213)
78 PRK13650 cbiO cobalt transport 100.0 1.7E-38 3.8E-43 258.7 6.1 153 14-177 21-176 (279)
79 PRK09536 btuD corrinoid ABC tr 100.0 2.4E-38 5.3E-43 268.9 7.2 156 11-177 14-175 (402)
80 PRK13646 cbiO cobalt transport 100.0 2E-38 4.4E-43 259.1 6.3 153 13-177 20-181 (286)
81 PRK13651 cobalt transporter AT 100.0 2.9E-38 6.2E-43 260.4 7.0 153 14-177 21-201 (305)
82 PRK15079 oligopeptide ABC tran 100.0 3.3E-38 7.2E-43 262.6 7.3 154 13-177 34-197 (331)
83 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.5E-38 7.6E-43 250.8 7.1 154 13-177 14-168 (236)
84 cd03235 ABC_Metallic_Cations A 100.0 2.6E-38 5.5E-43 247.8 6.3 151 13-177 12-168 (213)
85 TIGR02315 ABC_phnC phosphonate 100.0 4.3E-38 9.4E-43 250.9 7.5 154 13-177 15-181 (243)
86 PRK11264 putative amino-acid A 100.0 6E-38 1.3E-42 251.1 8.0 154 13-177 16-180 (250)
87 PRK13643 cbiO cobalt transport 100.0 4E-38 8.7E-43 257.6 7.0 153 13-177 19-180 (288)
88 PRK11248 tauB taurine transpor 100.0 5.7E-38 1.2E-42 252.6 7.2 151 13-177 14-164 (255)
89 PRK09493 glnQ glutamine ABC tr 100.0 8E-38 1.7E-42 249.2 7.2 154 13-177 14-172 (240)
90 TIGR00972 3a0107s01c2 phosphat 100.0 1E-37 2.3E-42 249.6 7.8 153 13-177 14-180 (247)
91 PRK11831 putative ABC transpor 100.0 9.2E-38 2E-42 253.1 7.5 154 13-177 20-179 (269)
92 PRK13538 cytochrome c biogenes 100.0 1.2E-37 2.7E-42 242.8 7.9 152 12-177 13-165 (204)
93 PRK13644 cbiO cobalt transport 100.0 5.2E-38 1.1E-42 255.3 6.0 154 13-177 15-172 (274)
94 PRK13641 cbiO cobalt transport 100.0 8.7E-38 1.9E-42 255.5 7.2 154 13-177 20-181 (287)
95 cd03224 ABC_TM1139_LivF_branch 100.0 8.7E-38 1.9E-42 245.9 6.7 152 13-177 13-168 (222)
96 PRK13631 cbiO cobalt transport 100.0 8.7E-38 1.9E-42 259.0 6.7 153 13-177 39-212 (320)
97 cd03257 ABC_NikE_OppD_transpor 100.0 1.5E-37 3.3E-42 245.3 7.7 153 14-177 19-181 (228)
98 PRK13636 cbiO cobalt transport 100.0 9.1E-38 2E-42 254.9 6.6 154 13-177 19-177 (283)
99 TIGR02982 heterocyst_DevA ABC 100.0 1.2E-37 2.6E-42 245.3 6.9 154 13-177 18-177 (220)
100 TIGR01277 thiQ thiamine ABC tr 100.0 1.5E-37 3.2E-42 243.7 7.3 152 15-177 13-164 (213)
101 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.1E-37 2.5E-42 243.8 6.6 150 17-177 15-164 (211)
102 COG4161 ArtP ABC-type arginine 100.0 8.9E-38 1.9E-42 232.7 5.6 156 10-176 12-176 (242)
103 PRK11124 artP arginine transpo 100.0 1.6E-37 3.5E-42 247.7 7.3 154 13-177 15-177 (242)
104 PRK13635 cbiO cobalt transport 100.0 1.1E-37 2.4E-42 253.9 6.4 154 13-177 20-176 (279)
105 TIGR01189 ccmA heme ABC export 100.0 2.7E-37 5.9E-42 239.7 8.2 151 12-177 12-163 (198)
106 COG4525 TauB ABC-type taurine 100.0 4.9E-38 1.1E-42 239.9 3.8 151 13-177 18-168 (259)
107 cd03267 ABC_NatA_like Similar 100.0 1.9E-37 4.1E-42 246.9 7.3 158 9-177 30-189 (236)
108 PRK10895 lipopolysaccharide AB 100.0 1.8E-37 3.8E-42 247.3 7.2 154 13-177 16-173 (241)
109 PRK13632 cbiO cobalt transport 100.0 1.9E-37 4.1E-42 251.5 6.9 154 13-177 22-178 (271)
110 PRK11308 dppF dipeptide transp 100.0 2.5E-37 5.4E-42 257.0 7.5 154 13-177 28-190 (327)
111 PRK13633 cobalt transporter AT 100.0 1.9E-37 4.2E-42 252.6 6.6 154 13-177 23-180 (280)
112 TIGR03411 urea_trans_UrtD urea 100.0 2.9E-37 6.3E-42 246.1 6.9 154 13-177 15-179 (242)
113 PRK13652 cbiO cobalt transport 100.0 2.9E-37 6.3E-42 251.2 7.0 153 14-177 18-173 (277)
114 PRK13649 cbiO cobalt transport 100.0 3.3E-37 7.2E-42 251.0 7.0 153 13-177 20-181 (280)
115 cd03297 ABC_ModC_molybdenum_tr 100.0 3.6E-37 7.9E-42 241.5 6.8 153 9-177 9-167 (214)
116 PRK13548 hmuV hemin importer A 100.0 5.4E-37 1.2E-41 247.2 8.0 154 13-177 15-176 (258)
117 TIGR03005 ectoine_ehuA ectoine 100.0 4.6E-37 1E-41 246.5 7.0 154 13-177 13-182 (252)
118 cd03231 ABC_CcmA_heme_exporter 100.0 6.2E-37 1.3E-41 238.4 7.4 148 13-177 13-161 (201)
119 PRK10619 histidine/lysine/argi 100.0 6.8E-37 1.5E-41 246.3 7.7 154 13-177 18-188 (257)
120 PRK11247 ssuB aliphatic sulfon 100.0 5.6E-37 1.2E-41 247.2 7.2 145 13-177 25-169 (257)
121 PRK13638 cbiO cobalt transport 100.0 5.7E-37 1.2E-41 248.6 7.2 154 13-177 14-172 (271)
122 PRK11022 dppD dipeptide transp 100.0 3.9E-37 8.5E-42 255.7 6.0 162 5-177 12-189 (326)
123 TIGR02770 nickel_nikD nickel i 100.0 7.3E-37 1.6E-41 242.4 7.1 152 15-177 1-161 (230)
124 PRK13639 cbiO cobalt transport 100.0 5.6E-37 1.2E-41 249.3 6.6 154 13-177 15-173 (275)
125 TIGR01184 ntrCD nitrate transp 100.0 6.6E-37 1.4E-41 242.8 6.7 148 16-177 1-150 (230)
126 PRK11144 modC molybdate transp 100.0 5.6E-37 1.2E-41 257.2 6.6 143 18-177 16-164 (352)
127 cd03299 ABC_ModC_like Archeal 100.0 6.8E-37 1.5E-41 243.4 6.6 152 15-177 14-165 (235)
128 PRK14247 phosphate ABC transpo 100.0 1.2E-36 2.7E-41 243.7 8.1 154 13-177 16-182 (250)
129 PRK13539 cytochrome c biogenes 100.0 1.2E-36 2.6E-41 237.8 7.7 149 13-177 15-163 (207)
130 TIGR02769 nickel_nikE nickel i 100.0 1E-36 2.2E-41 246.4 7.5 154 13-177 24-186 (265)
131 cd03234 ABCG_White The White s 100.0 1.6E-36 3.4E-41 239.9 8.3 154 12-177 19-179 (226)
132 PRK11300 livG leucine/isoleuci 100.0 1.1E-36 2.4E-41 244.4 7.6 154 13-177 18-189 (255)
133 PRK13640 cbiO cobalt transport 100.0 6.7E-37 1.5E-41 249.7 6.1 153 14-177 21-179 (282)
134 TIGR00968 3a0106s01 sulfate AB 100.0 8.9E-37 1.9E-41 243.0 6.5 154 13-177 13-166 (237)
135 PRK14268 phosphate ABC transpo 100.0 1.4E-36 3E-41 244.7 7.6 153 13-177 25-190 (258)
136 TIGR02142 modC_ABC molybdenum 100.0 1.2E-36 2.6E-41 255.4 7.5 147 18-177 15-167 (354)
137 PRK13642 cbiO cobalt transport 100.0 9E-37 2E-41 248.3 6.5 153 14-177 21-176 (277)
138 PRK14267 phosphate ABC transpo 100.0 1.5E-36 3.3E-41 243.5 7.6 154 13-177 17-185 (253)
139 cd03300 ABC_PotA_N PotA is an 100.0 1.3E-36 2.8E-41 241.3 7.1 154 13-177 13-166 (232)
140 PRK13540 cytochrome c biogenes 100.0 1.8E-36 4E-41 235.5 7.8 149 13-177 14-163 (200)
141 PRK11231 fecE iron-dicitrate t 100.0 1.6E-36 3.4E-41 243.9 7.5 154 13-177 15-174 (255)
142 PRK14241 phosphate transporter 100.0 2E-36 4.4E-41 243.7 8.1 154 13-177 17-184 (258)
143 PRK15112 antimicrobial peptide 100.0 1.9E-36 4.2E-41 245.1 7.3 155 12-177 25-185 (267)
144 PRK10575 iron-hydroxamate tran 100.0 1.5E-36 3.3E-41 245.4 6.5 154 13-177 24-183 (265)
145 PRK14273 phosphate ABC transpo 100.0 2.4E-36 5.2E-41 242.6 7.5 153 13-177 20-186 (254)
146 TIGR02324 CP_lyasePhnL phospho 100.0 2.3E-36 5E-41 238.3 7.3 154 13-177 21-185 (224)
147 PRK10771 thiQ thiamine transpo 100.0 1.4E-36 3E-41 241.0 5.9 150 17-177 16-165 (232)
148 PRK13543 cytochrome c biogenes 100.0 4.2E-36 9E-41 235.8 8.5 150 13-177 24-173 (214)
149 PRK13648 cbiO cobalt transport 100.0 2E-36 4.4E-41 245.2 6.9 153 14-177 23-178 (269)
150 TIGR03410 urea_trans_UrtE urea 100.0 2.1E-36 4.6E-41 239.5 6.8 151 13-177 13-167 (230)
151 PRK09473 oppD oligopeptide tra 100.0 1.4E-36 2.9E-41 252.9 6.0 162 5-177 21-197 (330)
152 PRK13645 cbiO cobalt transport 100.0 1.9E-36 4.1E-41 247.7 6.6 153 14-177 25-186 (289)
153 PRK10247 putative ABC transpor 100.0 4.9E-36 1.1E-40 237.1 8.7 151 13-177 20-173 (225)
154 PRK10744 pstB phosphate transp 100.0 3E-36 6.5E-41 243.0 7.3 153 13-177 26-192 (260)
155 COG3840 ThiQ ABC-type thiamine 100.0 7.4E-37 1.6E-41 231.0 3.4 149 18-177 17-165 (231)
156 TIGR03873 F420-0_ABC_ATP propo 100.0 3.5E-36 7.7E-41 242.0 7.5 154 13-177 14-173 (256)
157 PRK14250 phosphate ABC transpo 100.0 3.6E-36 7.8E-41 240.1 7.3 149 13-177 16-167 (241)
158 PRK10253 iron-enterobactin tra 100.0 2.4E-36 5.1E-41 244.3 6.2 154 13-177 20-179 (265)
159 PRK11614 livF leucine/isoleuci 100.0 2.1E-36 4.7E-41 240.5 5.7 152 13-177 18-173 (237)
160 PRK09984 phosphonate/organopho 100.0 4.2E-36 9E-41 242.3 7.1 154 13-177 17-188 (262)
161 PRK14242 phosphate transporter 100.0 5.5E-36 1.2E-40 240.3 7.7 153 13-177 19-185 (253)
162 PRK10762 D-ribose transporter 100.0 2.3E-36 5.1E-41 263.6 5.8 154 13-177 17-177 (501)
163 TIGR01978 sufC FeS assembly AT 100.0 6.6E-36 1.4E-40 238.2 7.6 154 13-177 13-180 (243)
164 TIGR03740 galliderm_ABC gallid 100.0 7E-36 1.5E-40 235.6 7.7 148 13-177 13-160 (223)
165 PRK14235 phosphate transporter 100.0 7.5E-36 1.6E-40 241.7 8.0 153 13-177 32-199 (267)
166 PRK15093 antimicrobial peptide 100.0 3.7E-36 8.1E-41 250.3 6.2 162 5-177 12-194 (330)
167 PRK10261 glutathione transport 100.0 5.8E-36 1.3E-40 267.1 7.6 154 13-177 337-499 (623)
168 cd03233 ABC_PDR_domain1 The pl 100.0 5.4E-36 1.2E-40 233.4 5.9 140 4-177 11-154 (202)
169 PRK13549 xylose transporter AT 100.0 3.6E-36 7.7E-41 262.8 5.4 155 12-177 17-179 (506)
170 PRK14256 phosphate ABC transpo 100.0 1.6E-35 3.5E-40 237.5 8.6 154 13-177 17-184 (252)
171 PRK14259 phosphate ABC transpo 100.0 9.4E-36 2E-40 241.4 7.2 152 13-177 26-190 (269)
172 PRK14269 phosphate ABC transpo 100.0 1.2E-35 2.6E-40 237.7 7.5 153 13-177 15-178 (246)
173 PRK09700 D-allose transporter 100.0 4.8E-36 1E-40 262.1 5.4 155 12-177 17-181 (510)
174 PRK10261 glutathione transport 100.0 6.9E-36 1.5E-40 266.6 6.4 162 5-177 21-204 (623)
175 PRK14270 phosphate ABC transpo 100.0 1.9E-35 4.1E-40 237.0 7.9 153 13-177 17-183 (251)
176 PRK14240 phosphate transporter 100.0 2.1E-35 4.6E-40 236.5 8.0 153 13-177 16-182 (250)
177 COG1123 ATPase components of v 100.0 1.4E-35 3.1E-40 256.1 7.2 157 10-177 301-465 (539)
178 COG4619 ABC-type uncharacteriz 100.0 5.3E-36 1.2E-40 223.9 3.6 155 10-178 13-170 (223)
179 COG0444 DppD ABC-type dipeptid 100.0 7.6E-36 1.6E-40 242.7 4.8 161 6-177 11-189 (316)
180 PRK10982 galactose/methyl gala 100.0 1.2E-35 2.7E-40 258.5 6.4 154 13-177 11-170 (491)
181 PRK14274 phosphate ABC transpo 100.0 2.4E-35 5.1E-40 237.6 7.4 153 13-177 25-191 (259)
182 PRK11288 araG L-arabinose tran 100.0 1.2E-35 2.5E-40 259.2 6.1 154 13-177 17-176 (501)
183 PRK14254 phosphate ABC transpo 100.0 2.9E-35 6.2E-40 240.5 8.0 152 13-177 52-216 (285)
184 TIGR01257 rim_protein retinal- 100.0 1.6E-35 3.4E-40 286.1 7.5 155 13-178 1952-2107(2272)
185 PRK15439 autoinducer 2 ABC tra 100.0 1.3E-35 2.8E-40 259.5 6.3 150 13-177 24-176 (510)
186 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-35 5.3E-40 258.2 7.9 154 13-177 13-204 (520)
187 PRK10418 nikD nickel transport 100.0 2.7E-35 5.9E-40 236.7 7.6 152 13-177 16-176 (254)
188 TIGR01187 potA spermidine/putr 100.0 4.4E-35 9.6E-40 243.3 8.8 136 35-177 1-136 (325)
189 TIGR01257 rim_protein retinal- 100.0 2.5E-35 5.4E-40 284.7 8.3 154 13-177 943-1097(2272)
190 PRK09700 D-allose transporter 100.0 2.2E-35 4.8E-40 257.9 6.9 153 14-177 277-445 (510)
191 TIGR03269 met_CoM_red_A2 methy 100.0 2.1E-35 4.6E-40 258.6 6.7 153 13-177 297-463 (520)
192 cd03245 ABCC_bacteriocin_expor 100.0 2.2E-35 4.8E-40 232.0 6.1 147 13-177 17-176 (220)
193 PRK14239 phosphate transporter 100.0 4.5E-35 9.7E-40 234.8 8.0 153 13-177 18-184 (252)
194 PRK14245 phosphate ABC transpo 100.0 4.9E-35 1.1E-39 234.5 8.0 153 13-177 16-182 (250)
195 TIGR02868 CydC thiol reductant 100.0 2.6E-35 5.6E-40 258.3 6.9 152 4-176 342-505 (529)
196 PRK11701 phnK phosphonate C-P 100.0 3.7E-35 8E-40 236.3 7.1 154 13-177 19-187 (258)
197 PRK14251 phosphate ABC transpo 100.0 4.7E-35 1E-39 234.6 7.6 154 12-177 16-183 (251)
198 PRK14272 phosphate ABC transpo 100.0 6.4E-35 1.4E-39 233.8 8.0 154 13-177 17-184 (252)
199 PRK15134 microcin C ABC transp 100.0 3.2E-35 6.9E-40 258.0 6.7 154 13-177 22-192 (529)
200 PRK14249 phosphate ABC transpo 100.0 8.5E-35 1.8E-39 233.3 8.6 153 13-177 17-183 (251)
201 PRK14244 phosphate ABC transpo 100.0 4.1E-35 8.8E-40 235.1 6.7 153 13-177 18-185 (251)
202 PRK13541 cytochrome c biogenes 100.0 4.5E-35 9.7E-40 226.9 6.6 145 14-177 15-159 (195)
203 PRK14248 phosphate ABC transpo 100.0 6.3E-35 1.4E-39 236.2 7.7 153 13-177 34-200 (268)
204 PRK15134 microcin C ABC transp 100.0 5.1E-35 1.1E-39 256.7 7.8 153 13-177 299-461 (529)
205 PRK14275 phosphate ABC transpo 100.0 5.3E-35 1.1E-39 239.0 7.3 153 13-177 52-218 (286)
206 COG4148 ModC ABC-type molybdat 100.0 1.8E-35 4E-40 236.0 4.3 143 18-177 16-164 (352)
207 PRK14237 phosphate transporter 100.0 6.4E-35 1.4E-39 236.2 7.6 153 13-177 33-199 (267)
208 PRK13547 hmuV hemin importer A 100.0 5.7E-35 1.2E-39 237.3 6.8 154 13-177 14-190 (272)
209 TIGR02633 xylG D-xylose ABC tr 100.0 5.2E-35 1.1E-39 255.0 7.0 154 13-177 14-177 (500)
210 PRK14260 phosphate ABC transpo 100.0 8.1E-35 1.8E-39 234.5 7.4 153 13-177 20-186 (259)
211 PRK14243 phosphate transporter 100.0 8.7E-35 1.9E-39 235.1 7.5 152 13-177 23-187 (264)
212 PRK14262 phosphate ABC transpo 100.0 1.1E-34 2.3E-39 232.5 7.9 153 13-177 16-182 (250)
213 PRK03695 vitamin B12-transport 100.0 7E-35 1.5E-39 233.7 6.8 151 14-177 10-169 (248)
214 PRK14253 phosphate ABC transpo 100.0 1.2E-34 2.5E-39 232.1 7.8 153 13-177 16-181 (249)
215 PRK10419 nikE nickel transport 100.0 9.7E-35 2.1E-39 235.3 7.4 154 13-177 25-187 (268)
216 PRK14246 phosphate ABC transpo 100.0 1.5E-34 3.3E-39 233.0 8.4 157 10-177 20-189 (257)
217 PRK13549 xylose transporter AT 100.0 1E-34 2.2E-39 253.6 7.9 154 13-177 275-441 (506)
218 TIGR02323 CP_lyasePhnK phospho 100.0 1E-34 2.3E-39 232.9 7.3 154 13-177 16-184 (253)
219 cd03254 ABCC_Glucan_exporter_l 100.0 5.1E-35 1.1E-39 231.3 5.3 147 13-177 16-175 (229)
220 TIGR02633 xylG D-xylose ABC tr 100.0 8.4E-35 1.8E-39 253.7 7.0 154 13-177 273-439 (500)
221 PRK11288 araG L-arabinose tran 100.0 7.6E-35 1.6E-39 254.1 6.5 154 13-177 266-432 (501)
222 PRK14261 phosphate ABC transpo 100.0 1.4E-34 3.1E-39 232.2 7.5 153 13-177 19-185 (253)
223 PRK14263 phosphate ABC transpo 100.0 1.7E-34 3.6E-39 233.2 7.8 154 11-177 19-185 (261)
224 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 9.4E-35 2E-39 229.8 6.2 148 9-177 31-178 (224)
225 PRK14271 phosphate ABC transpo 100.0 1.5E-34 3.2E-39 235.3 7.5 153 13-177 34-199 (276)
226 PRK14255 phosphate ABC transpo 100.0 2.3E-34 5E-39 230.7 8.6 153 13-177 18-184 (252)
227 PRK14238 phosphate transporter 100.0 1.6E-34 3.4E-39 234.5 7.6 153 13-177 37-203 (271)
228 PRK10762 D-ribose transporter 100.0 1.2E-34 2.5E-39 253.0 7.3 153 14-177 266-431 (501)
229 cd03252 ABCC_Hemolysin The ABC 100.0 2.4E-35 5.2E-40 234.4 2.7 151 13-177 15-174 (237)
230 PRK15056 manganese/iron transp 100.0 6.3E-35 1.4E-39 236.8 5.2 153 13-177 20-178 (272)
231 COG4604 CeuD ABC-type enteroch 100.0 1.1E-35 2.3E-40 227.2 0.1 161 5-176 6-170 (252)
232 PRK14258 phosphate ABC transpo 100.0 2.6E-34 5.7E-39 231.9 7.9 153 13-177 20-186 (261)
233 PRK14236 phosphate transporter 100.0 2.5E-34 5.5E-39 233.3 7.7 153 13-177 38-204 (272)
234 cd03290 ABCC_SUR1_N The SUR do 100.0 1.5E-34 3.3E-39 227.3 6.1 152 4-177 8-176 (218)
235 cd03251 ABCC_MsbA MsbA is an e 100.0 8.2E-35 1.8E-39 230.8 4.4 150 14-177 16-174 (234)
236 PRK14257 phosphate ABC transpo 100.0 2.6E-34 5.7E-39 239.0 7.4 153 13-177 95-261 (329)
237 cd03248 ABCC_TAP TAP, the Tran 100.0 4.3E-35 9.3E-40 231.4 2.3 150 14-177 28-186 (226)
238 PRK14265 phosphate ABC transpo 100.0 3.9E-34 8.4E-39 232.5 7.7 152 13-177 33-197 (274)
239 cd03237 ABC_RNaseL_inhibitor_d 100.0 4.2E-34 9.1E-39 229.2 7.5 146 4-177 1-151 (246)
240 PRK11174 cysteine/glutathione 100.0 2.1E-34 4.5E-39 255.4 6.0 146 13-177 363-521 (588)
241 cd03244 ABCC_MRP_domain2 Domai 100.0 3.4E-34 7.3E-39 225.5 6.0 146 13-177 17-175 (221)
242 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 3.4E-34 7.4E-39 258.1 6.8 153 4-177 459-624 (686)
243 COG1123 ATPase components of v 100.0 2.8E-34 6.1E-39 248.0 5.7 162 5-177 14-190 (539)
244 PRK14266 phosphate ABC transpo 100.0 6.3E-34 1.4E-38 228.0 7.3 153 13-177 16-182 (250)
245 PRK15439 autoinducer 2 ABC tra 100.0 5.9E-34 1.3E-38 249.1 7.7 153 14-177 277-439 (510)
246 KOG0058|consensus 100.0 4.2E-34 9.2E-39 251.1 6.4 154 4-176 473-639 (716)
247 PLN03211 ABC transporter G-25; 100.0 6.1E-34 1.3E-38 255.1 7.3 153 12-177 80-242 (659)
248 cd03253 ABCC_ATM1_transporter 100.0 2.7E-34 5.9E-39 228.1 4.0 147 13-177 14-173 (236)
249 PRK14264 phosphate ABC transpo 100.0 1.1E-33 2.3E-38 233.2 7.6 153 13-177 58-236 (305)
250 PRK10790 putative multidrug tr 100.0 5.6E-34 1.2E-38 252.9 6.0 152 4-177 348-512 (592)
251 PRK09544 znuC high-affinity zi 100.0 9.8E-34 2.1E-38 227.6 6.8 138 13-177 17-156 (251)
252 KOG0055|consensus 100.0 2.3E-34 5E-39 264.5 3.3 156 3-177 357-525 (1228)
253 CHL00131 ycf16 sulfate ABC tra 100.0 1.4E-33 3E-38 226.2 7.4 154 13-177 20-187 (252)
254 PRK14252 phosphate ABC transpo 100.0 1.8E-33 3.9E-38 227.4 8.1 153 13-177 29-197 (265)
255 PRK11160 cysteine/glutathione 100.0 9.1E-34 2E-38 251.0 6.8 154 4-177 346-511 (574)
256 TIGR03771 anch_rpt_ABC anchore 100.0 1.8E-33 3.9E-38 222.2 7.5 143 21-177 1-149 (223)
257 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 7.7E-34 1.7E-38 256.6 6.1 154 4-177 485-651 (710)
258 COG4559 ABC-type hemin transpo 100.0 1E-33 2.3E-38 218.3 5.9 156 11-177 12-177 (259)
259 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 2.8E-34 6E-39 228.4 2.7 151 13-177 16-175 (238)
260 PRK10938 putative molybdenum t 100.0 6.9E-34 1.5E-38 247.4 5.3 146 13-177 16-171 (490)
261 TIGR02857 CydD thiol reductant 100.0 1.2E-33 2.6E-38 247.8 6.8 154 4-177 328-494 (529)
262 cd03230 ABC_DR_subfamily_A Thi 100.0 1E-33 2.3E-38 215.5 5.5 118 13-177 13-131 (173)
263 PRK10535 macrolide transporter 100.0 1.5E-33 3.3E-38 252.5 7.2 162 5-177 13-180 (648)
264 PRK10982 galactose/methyl gala 100.0 2.1E-33 4.5E-38 244.5 7.6 153 14-177 262-427 (491)
265 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.7E-33 3.7E-38 229.0 6.6 145 13-177 17-174 (275)
266 COG2274 SunT ABC-type bacterio 100.0 1.4E-33 2.9E-38 253.1 6.5 154 4-177 479-645 (709)
267 PRK11176 lipid transporter ATP 100.0 2.1E-33 4.6E-38 248.6 7.5 155 4-177 349-516 (582)
268 TIGR00955 3a01204 The Eye Pigm 100.0 2E-33 4.3E-38 250.6 7.0 155 11-177 36-202 (617)
269 TIGR01193 bacteriocin_ABC ABC- 100.0 1.9E-33 4.2E-38 254.0 6.6 153 4-176 481-646 (708)
270 cd03229 ABC_Class3 This class 100.0 1.4E-33 3.1E-38 215.6 4.7 120 13-177 13-136 (178)
271 TIGR00958 3a01208 Conjugate Tr 100.0 3.2E-33 6.9E-38 252.8 7.6 154 4-176 486-652 (711)
272 cd03215 ABC_Carb_Monos_II This 100.0 2.9E-33 6.3E-38 214.6 6.2 120 15-177 15-140 (182)
273 COG1129 MglA ABC-type sugar tr 100.0 3E-33 6.5E-38 240.2 6.7 159 7-176 15-180 (500)
274 TIGR03375 type_I_sec_LssB type 100.0 2E-33 4.4E-38 253.4 5.9 154 4-177 471-637 (694)
275 cd03213 ABCG_EPDR ABCG transpo 100.0 3.8E-33 8.3E-38 216.1 6.6 124 13-177 22-147 (194)
276 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.5E-33 9.8E-38 217.3 7.1 138 14-177 22-161 (207)
277 PRK13546 teichoic acids export 100.0 4E-33 8.6E-38 225.6 6.9 144 12-177 36-179 (264)
278 cd03232 ABC_PDR_domain2 The pl 100.0 3.1E-33 6.8E-38 216.2 5.7 123 13-177 20-144 (192)
279 PRK09580 sufC cysteine desulfu 100.0 5.9E-33 1.3E-37 221.9 7.2 154 13-177 14-181 (248)
280 TIGR02203 MsbA_lipidA lipid A 100.0 3.4E-33 7.3E-38 246.7 6.2 155 4-177 338-505 (571)
281 PRK11819 putative ABC transpor 100.0 9.8E-33 2.1E-37 243.6 8.8 144 13-177 20-199 (556)
282 COG4988 CydD ABC-type transpor 100.0 8.4E-33 1.8E-37 238.5 7.9 153 4-177 328-492 (559)
283 PF00005 ABC_tran: ABC transpo 100.0 4E-33 8.7E-38 203.7 4.9 131 16-170 1-137 (137)
284 cd03247 ABCC_cytochrome_bd The 100.0 3.4E-33 7.5E-38 213.4 4.5 118 14-177 16-134 (178)
285 PRK15064 ABC transporter ATP-b 100.0 1.1E-32 2.3E-37 242.1 8.1 145 13-177 14-191 (530)
286 COG1132 MdlB ABC-type multidru 100.0 8.5E-33 1.8E-37 244.3 7.6 153 4-177 336-501 (567)
287 TIGR01842 type_I_sec_PrtD type 100.0 5.6E-33 1.2E-37 244.5 6.1 147 13-177 331-490 (544)
288 PRK10938 putative molybdenum t 100.0 4.4E-33 9.6E-38 242.3 5.0 154 13-177 273-437 (490)
289 cd03246 ABCC_Protease_Secretio 100.0 5.8E-33 1.3E-37 211.4 5.0 115 14-177 16-132 (173)
290 PRK13657 cyclic beta-1,2-gluca 100.0 5.7E-33 1.2E-37 246.4 5.7 153 4-177 342-507 (588)
291 cd03250 ABCC_MRP_domain1 Domai 100.0 5.4E-33 1.2E-37 216.4 4.7 134 14-177 19-163 (204)
292 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2E-32 4.3E-37 241.5 8.3 144 13-177 18-197 (552)
293 cd03223 ABCD_peroxisomal_ALDP 100.0 1E-32 2.2E-37 208.9 5.0 114 13-177 14-127 (166)
294 TIGR00956 3a01205 Pleiotropic 100.0 1.6E-32 3.4E-37 261.8 7.1 152 13-177 776-938 (1394)
295 PTZ00265 multidrug resistance 100.0 1.2E-32 2.6E-37 263.2 6.1 155 4-177 1173-1394(1466)
296 PRK15064 ABC transporter ATP-b 100.0 2.7E-32 5.9E-37 239.5 7.8 140 13-177 332-474 (530)
297 TIGR02204 MsbA_rel ABC transpo 100.0 1.8E-32 3.9E-37 242.3 6.5 155 4-177 345-512 (576)
298 COG4674 Uncharacterized ABC-ty 100.0 6.6E-33 1.4E-37 211.6 3.0 154 10-174 15-180 (249)
299 PRK10789 putative multidrug tr 100.0 1.8E-32 3.9E-37 242.5 6.2 154 4-177 321-487 (569)
300 COG1119 ModF ABC-type molybden 100.0 4.7E-33 1E-37 218.8 2.1 155 12-177 43-207 (257)
301 PRK11819 putative ABC transpor 100.0 3.5E-32 7.6E-37 240.1 7.5 144 12-177 336-481 (556)
302 COG4172 ABC-type uncharacteriz 100.0 4E-32 8.7E-37 225.9 7.2 152 12-175 299-460 (534)
303 cd03228 ABCC_MRP_Like The MRP 100.0 1.9E-32 4.1E-37 208.2 4.9 115 14-177 16-132 (171)
304 KOG0059|consensus 100.0 1.7E-32 3.6E-37 252.6 5.3 153 15-178 580-735 (885)
305 cd03288 ABCC_SUR2 The SUR doma 100.0 4.7E-32 1E-36 218.3 7.1 146 13-177 34-192 (257)
306 cd03214 ABC_Iron-Siderophores_ 100.0 7.8E-33 1.7E-37 211.9 2.4 120 13-177 12-133 (180)
307 COG3845 ABC-type uncharacteriz 100.0 2.9E-32 6.3E-37 231.1 5.9 158 8-176 12-175 (501)
308 TIGR01846 type_I_sec_HlyB type 100.0 2.8E-32 6.1E-37 246.0 6.1 154 4-177 463-629 (694)
309 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.1E-32 1.1E-36 238.9 7.4 143 13-177 335-479 (552)
310 KOG0057|consensus 100.0 2.5E-32 5.4E-37 233.7 5.1 144 14-176 366-522 (591)
311 PRK13409 putative ATPase RIL; 100.0 7.3E-32 1.6E-36 239.1 7.9 136 15-177 354-489 (590)
312 KOG0055|consensus 100.0 4E-32 8.7E-37 249.8 5.9 155 4-177 995-1162(1228)
313 TIGR01192 chvA glucan exporter 100.0 8.4E-32 1.8E-36 238.9 7.8 153 4-177 342-507 (585)
314 PRK15177 Vi polysaccharide exp 100.0 8.1E-32 1.7E-36 211.6 6.6 139 14-177 1-140 (213)
315 PRK13545 tagH teichoic acids e 100.0 5.5E-32 1.2E-36 234.6 6.1 143 13-177 37-179 (549)
316 PRK10522 multidrug transporter 100.0 3.3E-32 7.1E-37 239.8 4.7 149 4-177 330-485 (547)
317 TIGR00954 3a01203 Peroxysomal 100.0 6.5E-32 1.4E-36 242.4 6.0 144 13-177 465-618 (659)
318 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.2E-31 2.5E-36 216.1 6.2 146 14-177 15-175 (255)
319 cd03217 ABC_FeS_Assembly ABC-t 100.0 9.2E-32 2E-36 209.2 4.8 123 13-177 13-140 (200)
320 PTZ00265 multidrug resistance 100.0 9.7E-32 2.1E-36 257.0 5.9 161 4-177 390-615 (1466)
321 COG4608 AppF ABC-type oligopep 100.0 5.1E-32 1.1E-36 216.2 3.3 120 12-177 25-145 (268)
322 PLN03232 ABC transporter C fam 100.0 1.6E-31 3.4E-36 256.6 6.8 152 4-176 1242-1406(1495)
323 PLN03130 ABC transporter C fam 100.0 1.3E-31 2.7E-36 258.1 6.1 152 4-176 1245-1409(1622)
324 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.1E-31 2.3E-36 237.0 5.0 153 4-177 345-506 (555)
325 PLN03140 ABC transporter G fam 100.0 3E-31 6.5E-36 253.2 8.0 153 13-177 893-1055(1470)
326 PRK11147 ABC transporter ATPas 100.0 4E-31 8.7E-36 236.5 7.6 143 13-177 332-476 (635)
327 TIGR00956 3a01205 Pleiotropic 100.0 3.5E-31 7.7E-36 252.6 6.8 154 13-177 74-245 (1394)
328 COG4778 PhnL ABC-type phosphon 100.0 9.8E-32 2.1E-36 201.5 2.3 155 13-178 24-189 (235)
329 KOG0061|consensus 100.0 8.7E-31 1.9E-35 233.0 8.1 153 12-176 42-205 (613)
330 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.8E-31 1E-35 215.3 5.7 135 13-177 50-195 (282)
331 TIGR00957 MRP_assoc_pro multi 100.0 4.9E-31 1.1E-35 253.5 6.4 152 4-176 1292-1456(1522)
332 PTZ00243 ABC transporter; Prov 100.0 9.9E-31 2.1E-35 251.5 8.1 152 4-176 1316-1481(1560)
333 COG4133 CcmA ABC-type transpor 100.0 1.5E-30 3.3E-35 197.3 6.4 150 13-176 15-165 (209)
334 COG4172 ABC-type uncharacteriz 100.0 2.1E-30 4.5E-35 215.7 7.5 160 6-176 16-192 (534)
335 PRK10636 putative ABC transpor 100.0 3.6E-30 7.7E-35 230.4 8.7 148 9-177 10-185 (638)
336 COG4136 ABC-type uncharacteriz 100.0 3.7E-31 8.1E-36 195.0 1.4 153 11-175 13-168 (213)
337 PRK10636 putative ABC transpor 100.0 3.8E-30 8.1E-35 230.3 6.7 141 11-177 323-466 (638)
338 COG4987 CydC ABC-type transpor 100.0 1.4E-30 3E-35 222.7 3.2 154 4-177 344-510 (573)
339 cd03216 ABC_Carb_Monos_I This 100.0 2.2E-30 4.7E-35 195.7 3.8 103 13-177 13-118 (163)
340 PRK13409 putative ATPase RIL; 100.0 5.2E-30 1.1E-34 227.4 6.6 143 14-177 88-248 (590)
341 PLN03140 ABC transporter G fam 100.0 4.7E-30 1E-34 245.0 6.0 153 13-177 178-372 (1470)
342 COG1101 PhnK ABC-type uncharac 100.0 5.1E-30 1.1E-34 198.3 4.9 159 8-177 13-184 (263)
343 TIGR01271 CFTR_protein cystic 100.0 9.5E-30 2.1E-34 244.2 7.6 151 4-176 1225-1388(1490)
344 PLN03073 ABC transporter F fam 100.0 1.2E-29 2.7E-34 228.9 7.4 139 14-177 523-663 (718)
345 COG4586 ABC-type uncharacteriz 100.0 3.8E-30 8.2E-35 204.9 2.9 154 13-177 37-192 (325)
346 PRK11147 ABC transporter ATPas 100.0 2.6E-29 5.6E-34 224.9 8.5 145 11-177 14-192 (635)
347 COG0396 sufC Cysteine desulfur 100.0 1E-28 2.2E-33 192.6 8.8 153 13-176 17-179 (251)
348 COG0488 Uup ATPase components 100.0 1.8E-28 3.8E-33 214.1 8.3 149 7-176 10-188 (530)
349 COG4618 ArpD ABC-type protease 99.9 2E-28 4.3E-33 208.3 7.9 146 13-176 349-507 (580)
350 KOG0056|consensus 99.9 2.6E-29 5.6E-34 213.3 1.2 158 3-177 544-710 (790)
351 COG4167 SapF ABC-type antimicr 99.9 2.2E-28 4.7E-33 185.7 4.8 153 13-176 26-184 (267)
352 cd03238 ABC_UvrA The excision 99.9 1.8E-28 3.9E-33 187.5 3.9 115 13-177 8-125 (176)
353 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.9 1.7E-28 3.6E-33 181.9 3.3 94 13-177 13-106 (144)
354 PLN03232 ABC transporter C fam 99.9 3.5E-28 7.7E-33 233.6 6.3 143 4-176 622-775 (1495)
355 COG1129 MglA ABC-type sugar tr 99.9 9.9E-28 2.2E-32 206.2 7.7 152 15-177 274-437 (500)
356 TIGR01271 CFTR_protein cystic 99.9 6.4E-28 1.4E-32 231.7 5.7 135 13-177 439-584 (1490)
357 PLN03130 ABC transporter C fam 99.9 9.7E-28 2.1E-32 231.4 6.2 142 4-176 622-775 (1622)
358 cd03222 ABC_RNaseL_inhibitor T 99.9 5.3E-28 1.2E-32 185.0 3.2 98 10-177 10-107 (177)
359 COG4107 PhnK ABC-type phosphon 99.9 2.9E-27 6.3E-32 178.3 5.5 154 5-177 15-187 (258)
360 PTZ00243 ABC transporter; Prov 99.9 2.9E-27 6.2E-32 227.7 6.8 138 13-176 673-817 (1560)
361 cd00267 ABC_ATPase ABC (ATP-bi 99.9 1.8E-27 3.9E-32 178.2 3.4 102 14-177 13-116 (157)
362 TIGR00957 MRP_assoc_pro multi 99.9 4.3E-27 9.3E-32 226.4 6.4 134 13-176 651-795 (1522)
363 COG1134 TagH ABC-type polysacc 99.9 1.9E-26 4.2E-31 181.4 4.6 142 12-175 39-181 (249)
364 COG5265 ATM1 ABC-type transpor 99.9 8.6E-27 1.9E-31 194.8 1.9 152 4-176 270-434 (497)
365 cd03270 ABC_UvrA_I The excisio 99.9 1.2E-25 2.6E-30 178.1 7.8 147 13-177 8-175 (226)
366 COG0488 Uup ATPase components 99.9 6E-26 1.3E-30 198.3 6.2 139 13-177 335-475 (530)
367 PLN03073 ABC transporter F fam 99.9 1.6E-26 3.4E-31 208.8 1.0 156 11-177 188-380 (718)
368 KOG0054|consensus 99.9 3.6E-25 7.7E-30 207.5 4.3 151 5-176 1147-1310(1381)
369 cd03278 ABC_SMC_barmotin Barmo 99.9 3.3E-25 7.1E-30 172.3 3.0 127 17-177 14-153 (197)
370 cd03271 ABC_UvrA_II The excisi 99.9 4.1E-24 8.9E-29 172.5 5.4 148 13-177 8-208 (261)
371 KOG0065|consensus 99.9 2.3E-24 5.1E-29 199.2 2.2 154 11-176 802-965 (1391)
372 cd03272 ABC_SMC3_euk Eukaryoti 99.9 5E-24 1.1E-28 169.8 3.0 149 12-177 14-198 (243)
373 cd03274 ABC_SMC4_euk Eukaryoti 99.9 3E-25 6.5E-30 174.3 -5.2 138 11-177 15-167 (212)
374 cd03273 ABC_SMC2_euk Eukaryoti 99.9 2.3E-24 4.9E-29 173.0 -0.9 139 32-177 27-206 (251)
375 KOG0054|consensus 99.9 3.1E-23 6.7E-28 194.6 5.9 136 11-176 532-678 (1381)
376 KOG0927|consensus 99.9 3.5E-22 7.6E-27 171.3 6.4 145 4-176 397-544 (614)
377 COG3845 ABC-type uncharacteriz 99.9 2E-22 4.3E-27 171.4 4.5 153 13-176 271-438 (501)
378 COG4178 ABC-type uncharacteriz 99.8 3.3E-21 7.1E-26 169.0 5.7 139 13-176 406-550 (604)
379 cd03240 ABC_Rad50 The catalyti 99.8 2E-21 4.3E-26 151.8 0.8 126 20-177 17-157 (204)
380 COG1245 Predicted ATPase, RNas 99.8 7.4E-21 1.6E-25 160.8 4.2 141 14-177 350-491 (591)
381 cd03276 ABC_SMC6_euk Eukaryoti 99.8 1.2E-20 2.7E-25 146.7 3.7 132 15-177 11-149 (198)
382 cd03279 ABC_sbcCD SbcCD and ot 99.8 8.8E-21 1.9E-25 148.8 1.7 137 17-176 18-168 (213)
383 PRK00349 uvrA excinuclease ABC 99.8 2E-19 4.4E-24 165.9 6.8 74 98-177 792-869 (943)
384 COG4170 SapD ABC-type antimicr 99.8 1.9E-20 4.1E-25 145.3 -0.4 160 6-177 13-194 (330)
385 PRK00635 excinuclease ABC subu 99.8 2.9E-19 6.3E-24 171.7 6.7 83 94-177 759-848 (1809)
386 COG4138 BtuD ABC-type cobalami 99.8 1.6E-20 3.5E-25 141.9 -2.0 144 15-175 14-166 (248)
387 KOG0066|consensus 99.8 5.5E-19 1.2E-23 149.4 6.1 137 13-176 600-739 (807)
388 KOG0062|consensus 99.8 4E-19 8.6E-24 151.9 4.9 149 2-176 82-233 (582)
389 KOG0927|consensus 99.8 1.1E-19 2.4E-24 156.0 1.5 153 13-176 88-256 (614)
390 KOG0062|consensus 99.7 1.6E-18 3.5E-23 148.2 6.2 139 14-176 378-517 (582)
391 KOG0060|consensus 99.7 3.9E-18 8.4E-23 147.6 4.2 144 14-175 449-604 (659)
392 TIGR00630 uvra excinuclease AB 99.7 9.3E-18 2E-22 154.7 5.7 74 98-177 790-867 (924)
393 cd03275 ABC_SMC1_euk Eukaryoti 99.7 3E-18 6.5E-23 137.4 0.3 135 32-176 24-194 (247)
394 KOG0065|consensus 99.7 5.1E-18 1.1E-22 157.7 1.1 151 14-176 129-295 (1391)
395 COG4615 PvdE ABC-type sideroph 99.7 6.9E-18 1.5E-22 141.0 1.1 139 16-177 339-484 (546)
396 COG1245 Predicted ATPase, RNas 99.7 1E-17 2.2E-22 141.9 1.5 135 23-177 97-249 (591)
397 cd03280 ABC_MutS2 MutS2 homolo 99.6 2.9E-16 6.4E-21 122.1 -0.6 109 15-176 16-125 (200)
398 cd03277 ABC_SMC5_euk Eukaryoti 99.5 2.3E-15 4.9E-20 118.4 1.2 45 133-177 118-166 (213)
399 KOG0064|consensus 99.5 2.3E-15 5.1E-20 129.5 0.5 137 14-175 496-646 (728)
400 PRK00349 uvrA excinuclease ABC 99.5 2E-14 4.2E-19 133.2 5.1 81 95-177 434-527 (943)
401 KOG0066|consensus 99.5 4.4E-14 9.4E-19 120.0 6.1 152 14-176 278-447 (807)
402 TIGR00630 uvra excinuclease AB 99.5 4.3E-14 9.4E-19 130.7 4.8 81 96-177 433-525 (924)
403 KOG0063|consensus 99.4 7E-14 1.5E-18 118.1 4.0 149 4-177 343-492 (592)
404 cd03239 ABC_SMC_head The struc 99.4 5.8E-14 1.2E-18 107.5 3.2 36 142-177 95-134 (178)
405 KOG2355|consensus 99.4 1.2E-13 2.7E-18 107.1 2.8 150 4-177 21-183 (291)
406 cd03283 ABC_MutS-like MutS-lik 99.4 2.3E-14 5.1E-19 111.5 -1.3 109 13-176 14-122 (199)
407 cd03285 ABC_MSH2_euk MutS2 hom 99.4 2.9E-14 6.2E-19 112.8 -0.9 107 13-176 17-129 (222)
408 COG2401 ABC-type ATPase fused 99.4 2E-13 4.4E-18 115.1 4.0 135 13-176 396-542 (593)
409 PRK00635 excinuclease ABC subu 99.3 7.4E-13 1.6E-17 128.2 5.5 80 97-177 426-514 (1809)
410 cd03227 ABC_Class2 ABC-type Cl 99.3 2.4E-13 5.2E-18 102.4 1.7 36 142-177 78-117 (162)
411 cd03241 ABC_RecN RecN ATPase i 99.3 3.3E-13 7.1E-18 109.9 2.3 38 140-177 169-210 (276)
412 COG0178 UvrA Excinuclease ATPa 99.3 5.2E-12 1.1E-16 113.5 8.4 71 98-174 784-858 (935)
413 cd03242 ABC_RecF RecF is a rec 99.3 1.9E-12 4E-17 105.2 4.0 39 139-177 181-228 (270)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.3 5.1E-13 1.1E-17 104.4 -0.4 109 13-176 16-125 (204)
415 cd03243 ABC_MutS_homologs The 99.1 2.9E-12 6.3E-17 99.7 -1.9 40 136-176 86-125 (202)
416 PTZ00132 GTP-binding nuclear p 99.1 1.8E-11 3.8E-16 95.8 0.6 38 140-177 149-193 (215)
417 KOG0063|consensus 99.0 3.1E-10 6.8E-15 96.3 2.8 136 24-177 98-249 (592)
418 smart00534 MUTSac ATPase domai 98.9 7.5E-11 1.6E-15 90.7 -1.6 49 127-176 47-95 (185)
419 PHA02562 46 endonuclease subun 98.9 9.4E-10 2E-14 97.4 3.9 51 124-177 454-515 (562)
420 TIGR01069 mutS2 MutS2 family p 98.9 3.5E-10 7.7E-15 103.6 1.0 104 19-176 314-419 (771)
421 cd00820 PEPCK_HprK Phosphoenol 98.9 2.3E-10 4.9E-15 80.5 -0.4 74 13-106 2-77 (107)
422 TIGR02858 spore_III_AA stage I 98.9 1.5E-09 3.2E-14 88.3 4.0 63 33-103 114-179 (270)
423 TIGR00618 sbcc exonuclease Sbc 98.8 2.5E-09 5.4E-14 101.2 3.5 47 130-176 939-995 (1042)
424 cd03284 ABC_MutS1 MutS1 homolo 98.8 1.5E-09 3.2E-14 85.6 1.1 104 14-175 19-128 (216)
425 PRK10246 exonuclease subunit S 98.8 3.5E-09 7.7E-14 100.1 3.0 43 135-177 943-993 (1047)
426 TIGR00606 rad50 rad50. This fa 98.7 5.7E-09 1.2E-13 100.7 3.8 40 137-176 1195-1240(1311)
427 TIGR00634 recN DNA repair prot 98.7 4.4E-09 9.5E-14 93.6 2.8 37 140-176 439-479 (563)
428 cd03281 ABC_MSH5_euk MutS5 hom 98.7 7.3E-09 1.6E-13 81.5 3.5 31 145-175 94-124 (213)
429 PRK01156 chromosome segregatio 98.7 1.6E-08 3.5E-13 94.3 6.4 40 137-176 797-842 (895)
430 PRK10869 recombination and rep 98.7 1.1E-08 2.5E-13 90.8 3.3 36 141-176 430-469 (553)
431 PRK06995 flhF flagellar biosyn 98.7 2.1E-08 4.6E-13 87.3 4.5 131 14-173 244-380 (484)
432 PRK03918 chromosome segregatio 98.7 1.1E-08 2.3E-13 95.1 2.5 46 131-176 778-829 (880)
433 TIGR02168 SMC_prok_B chromosom 98.6 1.8E-08 3.9E-13 95.4 3.1 44 134-177 1082-1129(1179)
434 PRK06793 fliI flagellum-specif 98.5 9.3E-08 2E-12 82.3 3.5 110 14-175 145-262 (432)
435 PRK00064 recF recombination pr 98.5 5E-08 1.1E-12 82.5 1.6 40 138-177 270-318 (361)
436 TIGR02680 conserved hypothetic 98.4 8.4E-08 1.8E-12 92.9 2.4 44 134-177 1240-1295(1353)
437 TIGR02169 SMC_prok_A chromosom 98.4 9.6E-08 2.1E-12 90.7 2.5 43 135-177 1068-1114(1164)
438 TIGR00611 recf recF protein. A 98.4 8.6E-08 1.9E-12 81.2 1.7 38 140-177 274-320 (365)
439 PF13558 SbcCD_C: Putative exo 98.4 2.2E-07 4.8E-12 63.4 2.9 41 136-176 27-80 (90)
440 PRK00409 recombination and DNA 98.4 1.6E-07 3.6E-12 86.4 2.2 43 133-176 382-424 (782)
441 cd02023 UMPK Uridine monophosp 98.3 2.6E-07 5.7E-12 71.3 2.5 113 33-175 2-114 (198)
442 PRK14079 recF recombination pr 98.3 3.8E-07 8.2E-12 76.8 2.6 38 140-177 262-308 (349)
443 cd01128 rho_factor Transcripti 98.3 7.4E-07 1.6E-11 71.8 3.5 34 141-176 129-170 (249)
444 TIGR03238 dnd_assoc_3 dnd syst 98.2 2.9E-07 6.4E-12 79.8 -0.9 67 13-92 19-87 (504)
445 PRK07196 fliI flagellum-specif 98.1 1.2E-06 2.7E-11 75.5 2.6 86 14-111 144-240 (434)
446 PRK02224 chromosome segregatio 98.1 1.7E-06 3.8E-11 80.6 2.4 40 137-176 777-828 (880)
447 cd01124 KaiC KaiC is a circadi 98.0 1.3E-05 2.9E-10 60.7 5.9 47 127-173 57-109 (187)
448 PRK06315 type III secretion sy 98.0 6.8E-06 1.5E-10 71.1 4.3 117 14-143 153-293 (442)
449 cd03287 ABC_MSH3_euk MutS3 hom 97.9 1.3E-06 2.9E-11 69.2 -1.1 43 14-67 19-62 (222)
450 COG0178 UvrA Excinuclease ATPa 97.9 4.3E-05 9.2E-10 69.8 7.8 77 97-175 428-517 (935)
451 PRK13695 putative NTPase; Prov 97.7 2.7E-06 5.8E-11 64.5 -2.3 39 136-174 73-113 (174)
452 PF02463 SMC_N: RecF/RecN/SMC 97.7 2.7E-05 5.9E-10 60.9 2.8 51 121-177 122-176 (220)
453 PRK08533 flagellar accessory p 97.6 4.2E-05 9.1E-10 60.8 3.3 32 141-172 95-130 (230)
454 cd03286 ABC_MSH6_euk MutS6 hom 97.6 0.00014 3E-09 57.5 5.7 35 13-58 17-51 (218)
455 PRK06002 fliI flagellum-specif 97.6 2.9E-05 6.3E-10 67.3 1.9 72 6-92 149-229 (450)
456 cd01130 VirB11-like_ATPase Typ 97.6 5.4E-05 1.2E-09 58.1 2.9 83 15-109 14-98 (186)
457 COG0419 SbcC ATPase involved i 97.4 0.00012 2.6E-09 68.8 4.1 41 136-176 810-858 (908)
458 PF13304 AAA_21: AAA domain; P 97.4 7.1E-05 1.5E-09 57.8 2.1 40 138-177 233-275 (303)
459 TIGR02788 VirB11 P-type DNA tr 97.4 0.00022 4.8E-09 59.0 4.6 41 19-70 137-177 (308)
460 smart00382 AAA ATPases associa 97.3 0.00064 1.4E-08 47.6 5.5 37 139-175 58-94 (148)
461 cd01120 RecA-like_NTPases RecA 97.2 0.00027 6E-09 51.5 3.1 33 140-172 66-98 (165)
462 PRK07721 fliI flagellum-specif 97.1 0.00018 3.9E-09 62.4 1.6 66 14-91 147-222 (438)
463 TIGR02903 spore_lon_C ATP-depe 97.1 0.00059 1.3E-08 61.7 4.1 39 121-176 243-281 (615)
464 PRK06067 flagellar accessory p 97.0 0.00058 1.2E-08 54.1 3.5 35 140-174 99-135 (234)
465 PRK09825 idnK D-gluconate kina 96.9 0.00019 4.1E-09 54.7 -0.1 65 32-107 5-70 (176)
466 cd01131 PilT Pilus retraction 96.9 0.0017 3.7E-08 50.3 5.1 19 151-169 66-84 (198)
467 TIGR02546 III_secr_ATP type II 96.9 0.00067 1.5E-08 58.6 2.7 74 13-98 133-214 (422)
468 PRK08149 ATP synthase SpaL; Va 96.8 0.00042 9E-09 59.9 1.1 67 14-92 140-215 (428)
469 cd01136 ATPase_flagellum-secre 96.6 0.0005 1.1E-08 57.5 0.2 49 14-74 58-106 (326)
470 PRK07594 type III secretion sy 96.5 0.00084 1.8E-08 58.1 0.5 52 14-77 144-195 (433)
471 TIGR00554 panK_bact pantothena 96.5 0.0012 2.6E-08 54.4 1.4 71 32-110 64-137 (290)
472 PRK07960 fliI flagellum-specif 96.4 0.00094 2E-08 58.0 0.6 67 14-92 164-238 (455)
473 TIGR03497 FliI_clade2 flagella 96.4 0.00084 1.8E-08 57.9 0.3 57 6-77 121-177 (413)
474 PRK01889 GTPase RsgA; Reviewed 96.4 0.0016 3.4E-08 55.2 1.5 67 16-94 185-251 (356)
475 TIGR01026 fliI_yscN ATPase Fli 96.3 0.0011 2.4E-08 57.6 0.3 50 14-75 152-201 (440)
476 COG3910 Predicted ATPase [Gene 96.3 0.0039 8.5E-08 48.4 3.3 42 134-176 122-163 (233)
477 cd01125 repA Hexameric Replica 96.3 0.0014 3E-08 52.2 0.8 17 155-172 107-123 (239)
478 PRK14721 flhF flagellar biosyn 96.3 0.0023 4.9E-08 55.3 2.1 27 23-60 188-214 (420)
479 TIGR02524 dot_icm_DotB Dot/Icm 96.3 0.00066 1.4E-08 57.5 -1.3 112 32-150 136-268 (358)
480 cd01876 YihA_EngB The YihA (En 96.3 0.0053 1.1E-07 44.6 3.7 53 120-176 100-158 (170)
481 TIGR03185 DNA_S_dndD DNA sulfu 96.2 0.0036 7.8E-08 57.0 3.1 39 138-177 548-592 (650)
482 PRK09270 nucleoside triphospha 96.2 0.0033 7.1E-08 49.7 2.4 69 32-110 35-107 (229)
483 cd02025 PanK Pantothenate kina 96.2 0.0017 3.8E-08 51.2 0.7 24 33-63 2-25 (220)
484 PRK09099 type III secretion sy 96.2 0.0014 3.1E-08 56.9 0.2 51 14-76 152-202 (441)
485 PRK10416 signal recognition pa 96.1 0.0022 4.8E-08 53.4 1.1 69 32-107 116-192 (318)
486 PRK14722 flhF flagellar biosyn 96.1 0.006 1.3E-07 52.0 3.7 73 13-114 124-196 (374)
487 TIGR03498 FliI_clade3 flagella 96.0 0.0018 4E-08 55.9 0.2 53 14-78 129-181 (418)
488 cd01854 YjeQ_engC YjeQ/EngC. 96.0 0.0049 1.1E-07 50.6 2.5 71 32-109 163-242 (287)
489 TIGR03496 FliI_clade1 flagella 95.9 0.0016 3.6E-08 56.1 -0.4 50 14-75 126-175 (411)
490 PRK00098 GTPase RsgA; Reviewed 95.8 0.009 2E-07 49.3 3.5 70 32-108 166-244 (298)
491 PRK14723 flhF flagellar biosyn 95.8 0.011 2.3E-07 54.7 4.1 38 14-62 173-210 (767)
492 PRK09862 putative ATP-dependen 95.7 0.0021 4.5E-08 56.8 -0.7 58 7-75 191-248 (506)
493 TIGR02655 circ_KaiC circadian 95.6 3.1E-05 6.6E-10 68.0 -12.6 125 14-162 8-138 (484)
494 PRK05688 fliI flagellum-specif 95.5 0.0035 7.7E-08 54.5 -0.0 52 14-77 157-211 (451)
495 PLN02318 phosphoribulokinase/u 95.4 0.0061 1.3E-07 54.8 0.9 63 31-106 66-128 (656)
496 PRK11545 gntK gluconate kinase 95.4 0.0052 1.1E-07 46.1 0.4 61 36-107 1-62 (163)
497 TIGR00606 rad50 rad50. This fa 95.3 0.0089 1.9E-07 58.5 1.9 53 32-91 30-87 (1311)
498 PRK08472 fliI flagellum-specif 95.3 0.0044 9.6E-08 53.7 -0.2 52 14-77 146-197 (434)
499 TIGR03881 KaiC_arch_4 KaiC dom 95.2 0.00032 6.9E-09 55.2 -6.9 27 14-44 7-34 (229)
500 PRK00454 engB GTP-binding prot 95.2 0.21 4.5E-06 37.7 8.8 52 121-176 126-181 (196)
No 1
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=316.37 Aligned_cols=159 Identities=16% Similarity=0.154 Sum_probs=148.0
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc---cHHhhcc
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM---HLFQYLS 83 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~---~~~~~~~ 83 (178)
.+.+|...+|++||++|.+|| ..+|+|||||||| |+++|++++.+|++|.|+++|.++. +..++|+
T Consensus 9 ~K~fg~~~VLkgi~l~v~~Ge----vv~iiGpSGSGKS-------TlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~ 77 (240)
T COG1126 9 SKSFGDKEVLKGISLSVEKGE----VVVIIGPSGSGKS-------TLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77 (240)
T ss_pred eEEeCCeEEecCcceeEcCCC----EEEEECCCCCCHH-------HHHHHHHCCcCCCCceEEECCEeccchhhHHHHHH
Confidence 456788899999999999999 7779999999999 9999999999999999999998764 5678899
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
.+|+|||+.++||++||.||+.... ...+.++.++++++.++|+++||.+.++.+|.+|||||||||+|||||+++|++
T Consensus 78 ~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 78 KVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred hcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 9999999999999999999999865 456788888899999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYN 176 (178)
Q Consensus 163 lllDEPt~gLD~~~ 176 (178)
++||||||+|||..
T Consensus 158 mLFDEPTSALDPEl 171 (240)
T COG1126 158 MLFDEPTSALDPEL 171 (240)
T ss_pred EeecCCcccCCHHH
Confidence 99999999999974
No 2
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-48 Score=310.01 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=150.1
Q ss_pred hhhh-ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----H
Q psy860 5 QYLS-GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----L 78 (178)
Q Consensus 5 ~~~~-~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~ 78 (178)
.|.. +.+..++++||||+|++|| ..+|+|.||+||| ||+++++++..|++|.|.++|+++.. +
T Consensus 10 ~~~~~~~~~~~al~~vsL~I~~Ge----I~GIIG~SGAGKS-------TLiR~iN~Le~PtsG~v~v~G~di~~l~~~~L 78 (339)
T COG1135 10 TFGQTGTGTVTALDDVSLEIPKGE----IFGIIGYSGAGKS-------TLLRLINLLERPTSGSVFVDGQDLTALSEAEL 78 (339)
T ss_pred eeccCCCCceeeeccceEEEcCCc----EEEEEcCCCCcHH-------HHHHHHhccCCCCCceEEEcCEecccCChHHH
Confidence 4544 4445789999999999999 5559999999999 99999999999999999999988764 4
Q ss_pred HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 79 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 79 ~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.+.|+.||++||++++....||++|+.|+..+.+.++.+..+++.++++.+||++.++++|.+|||||||||+|||||+.
T Consensus 79 r~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~ 158 (339)
T COG1135 79 RQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALAN 158 (339)
T ss_pred HHHHhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhc
Confidence 57889999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++|++|||||+|||.++
T Consensus 159 ~P~iLL~DEaTSALDP~TT 177 (339)
T COG1135 159 NPKILLCDEATSALDPETT 177 (339)
T ss_pred CCCEEEecCccccCChHHH
Confidence 9999999999999999864
No 3
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=295.21 Aligned_cols=154 Identities=20% Similarity=0.228 Sum_probs=142.7
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP 89 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~ 89 (178)
+|.+.||+||||+|.+|| |.+|+|||||||| ||++.+.|+.+|++|+|.++|+.+..+ ...++|||
T Consensus 13 f~~~~vl~~i~L~v~~GE----fvsilGpSGcGKS-------TLLriiAGL~~p~~G~V~~~g~~v~~p---~~~~~~vF 78 (248)
T COG1116 13 FGGVEVLEDINLSVEKGE----FVAILGPSGCGKS-------TLLRLIAGLEKPTSGEVLLDGRPVTGP---GPDIGYVF 78 (248)
T ss_pred eCceEEeccceeEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCcccCCC---CCCEEEEe
Confidence 344789999999999999 9999999999999 999999999999999999999987443 44799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|++.++|.+||.||+.+.....+.++.+.+++++++|+.+||....+++|.+|||||||||+|||||+.+|++|+||||+
T Consensus 79 Q~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 79 QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred ccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99999999999999999888877777777789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
++||..++
T Consensus 159 gALDalTR 166 (248)
T COG1116 159 GALDALTR 166 (248)
T ss_pred chhhHHHH
Confidence 99998654
No 4
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-46 Score=293.69 Aligned_cols=160 Identities=24% Similarity=0.268 Sum_probs=150.7
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccc
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSG 84 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ 84 (178)
++.++...|++|+||+|++|| |..++|+|||||| |+++.++++.+|++|+|.++|+++.+ ..++|++
T Consensus 8 sk~y~~~~av~~v~l~I~~ge----f~vliGpSGsGKT-------TtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~ 76 (309)
T COG1125 8 SKRYGNKKAVDDVNLTIEEGE----FLVLIGPSGSGKT-------TTLKMINRLIEPTSGEILIDGEDISDLDPVELRRK 76 (309)
T ss_pred ehhcCCceeeeeeeEEecCCe----EEEEECCCCCcHH-------HHHHHHhcccCCCCceEEECCeecccCCHHHHHHh
Confidence 345567789999999999999 8889999999999 99999999999999999999999987 5688999
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC--ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 85 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT--EYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
||||-|..++||++||.||+...+.+.+.++++.+++++++++.+||+ ++++++|++|||||||||.+||||+.+|++
T Consensus 77 IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 77 IGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence 999999999999999999999999888888888889999999999997 599999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
+++|||+++|||.+|
T Consensus 157 lLMDEPFgALDpI~R 171 (309)
T COG1125 157 LLMDEPFGALDPITR 171 (309)
T ss_pred EeecCCccccChhhH
Confidence 999999999999876
No 5
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=9.9e-45 Score=284.64 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=141.9
Q ss_pred hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hh
Q psy860 6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQ 80 (178)
Q Consensus 6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~ 80 (178)
|..+-...++|++|||+|++|| |.+|.|||||||| ||+..+.++.+|++|.+.++|.++..+ .+
T Consensus 11 y~~~~~~~~~L~~v~l~i~~Ge----~vaI~GpSGSGKS-------TLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~ 79 (226)
T COG1136 11 YGLGGEKVEALKDVNLEIEAGE----FVAIVGPSGSGKS-------TLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAK 79 (226)
T ss_pred eccCCcceEecccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCceEEECCEEcCcCCHHHHHH
Confidence 5444444789999999999999 9999999999999 999999999999999999999887643 33
Q ss_pred h-ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-CcCCCCChHHHHHHHHHHHHhC
Q psy860 81 Y-LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-RVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 81 ~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+ ++.||||||+.++.|++||.||+.++..+.+.+.....+++.++++.+|+.+..+ ++|.+|||||||||+|||||+.
T Consensus 80 ~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~ 159 (226)
T COG1136 80 LRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALIN 159 (226)
T ss_pred HHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhc
Confidence 4 4679999999999999999999999887776654455677889999999996666 8899999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++.||||.+||..+.
T Consensus 160 ~P~iilADEPTgnLD~~t~ 178 (226)
T COG1136 160 NPKIILADEPTGNLDSKTA 178 (226)
T ss_pred CCCeEEeeCccccCChHHH
Confidence 9999999999999998753
No 6
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.7e-45 Score=302.78 Aligned_cols=158 Identities=21% Similarity=0.232 Sum_probs=149.3
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEe
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v 88 (178)
.+|...++++||++|+.|| |.+++|||||||| |+++.+.|+.+|++|+|.++|++++++...+|+|++|
T Consensus 12 ~yg~~~~l~~i~l~i~~Ge----f~vllGPSGcGKS-------TlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamV 80 (338)
T COG3839 12 SFGSFEVLKDVNLDIEDGE----FVVLLGPSGCGKS-------TLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMV 80 (338)
T ss_pred EcCCceeeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEE
Confidence 3444348999999999999 9999999999999 9999999999999999999999999977777899999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
||++.+||+|||+||+.|..+..+.++.+.+++++++.+.++|.++.+++|.+|||||||||+|||||+.+|++++||||
T Consensus 81 FQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEP 160 (338)
T COG3839 81 FQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEP 160 (338)
T ss_pred eCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCc
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
+|.||.+.|
T Consensus 161 lSnLDa~lR 169 (338)
T COG3839 161 LSNLDAKLR 169 (338)
T ss_pred hhHhhHHHH
Confidence 999998643
No 7
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-45 Score=303.28 Aligned_cols=159 Identities=19% Similarity=0.211 Sum_probs=147.1
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG 86 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig 86 (178)
.+.+|...+++|||++|++|| |.+++|||||||| |+++++.|+..|++|+|.++|+++.+....+|.||
T Consensus 12 ~k~yg~~~av~~isl~i~~Ge----f~~lLGPSGcGKT-------TlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig 80 (352)
T COG3842 12 SKSFGDFTAVDDISLDIKKGE----FVTLLGPSGCGKT-------TLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIG 80 (352)
T ss_pred eeecCCeeEEecceeeecCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCCCChhhcccc
Confidence 355667799999999999999 9999999999999 99999999999999999999999999888888999
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
+|||++.+||+|||+||+.|..+..+. .+.+.++++.++++.++|.++++++|++|||||||||+|||||+.+|++|+|
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 999999999999999999999885543 3345678999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCC
Q psy860 166 KLPFSSQNLYN 176 (178)
Q Consensus 166 DEPt~gLD~~~ 176 (178)
|||.|+||.+-
T Consensus 161 DEPlSaLD~kL 171 (352)
T COG3842 161 DEPLSALDAKL 171 (352)
T ss_pred cCcccchhHHH
Confidence 99999999754
No 8
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.6e-44 Score=282.60 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=145.6
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhh
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQY 81 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~ 81 (178)
..++|...+++||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|+++|+++.+. .++
T Consensus 15 ~~~fG~~~Ild~v~l~V~~Ge----i~~iiGgSGsGKS-------tlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 15 TKSFGDRVILDGVDLDVPRGE----ILAILGGSGSGKS-------TLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred eeecCCEEEecCceeeecCCc----EEEEECCCCcCHH-------HHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 356788899999999999999 6779999999999 999999999999999999999998754 357
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
|+++|++||.-.+|..+||+||+.|+.+. ...+++..++.+..-|+.+||... .+++|++|||||++||+|||||+.+
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 88999999999999999999999997654 356767777888889999999866 8999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++++||||+||||.+.
T Consensus 164 Pell~~DEPtsGLDPI~a 181 (263)
T COG1127 164 PELLFLDEPTSGLDPISA 181 (263)
T ss_pred CCEEEecCCCCCCCcchH
Confidence 999999999999999864
No 9
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.8e-44 Score=272.50 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=148.1
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----H
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----F 79 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~ 79 (178)
.|+.| .+||+||||+|++|| |.=+.||||+||| |+++.+.+..+|+.|+|+++|.++..+ .
T Consensus 10 ~Y~~g---~~aL~~vs~~i~~Ge----f~fl~GpSGAGKS-------TllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP 75 (223)
T COG2884 10 AYPGG---REALRDVSFHIPKGE----FVFLTGPSGAGKS-------TLLKLIYGEERPTRGKILVNGHDLSRLKGREIP 75 (223)
T ss_pred hcCCC---chhhhCceEeecCce----EEEEECCCCCCHH-------HHHHHHHhhhcCCCceEEECCeecccccccccc
Confidence 45544 579999999999999 7889999999999 999999999999999999999998764 4
Q ss_pred hhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 80 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 80 ~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
-+|++||+|||+..+.++.||.||++++....+.+..+.++++.++|+.+||.+.++..|.+|||||||||+||||++.+
T Consensus 76 ~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~ 155 (223)
T COG2884 76 FLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQ 155 (223)
T ss_pred hhhheeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccC
Confidence 57899999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~ 176 (178)
|++|+.||||..|||..
T Consensus 156 P~vLlADEPTGNLDp~~ 172 (223)
T COG2884 156 PAVLLADEPTGNLDPDL 172 (223)
T ss_pred CCeEeecCCCCCCChHH
Confidence 99999999999999964
No 10
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.5e-44 Score=284.95 Aligned_cols=155 Identities=20% Similarity=0.214 Sum_probs=139.4
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEec
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCP 89 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~ 89 (178)
..++++||||+|++|| +.+|+|||||||| ||+++++|+.+|++|+|.++|+++.. .+++.+.++|||
T Consensus 14 ~~~il~~ls~~i~~G~----i~~iiGpNG~GKS-------TLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vp 82 (258)
T COG1120 14 GKPILDDLSFSIPKGE----ITGILGPNGSGKS-------TLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVP 82 (258)
T ss_pred CeeEEecceEEecCCc----EEEEECCCCCCHH-------HHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEec
Confidence 4579999999999999 8889999999999 99999999999999999999999976 467888999999
Q ss_pred CCCCCCCCCCHHHHHHHHHH----hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 90 QFNGINEHLTAQEMLECFSA----LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
|.+...+.+||+|.+.+... ++....+++.+.+.++|+.+++.+++++.+.+|||||||||.|||||+++|++|+|
T Consensus 83 Q~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLL 162 (258)
T COG1120 83 QSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLL 162 (258)
T ss_pred cCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEe
Confidence 99988899999999987422 22333455666899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCC
Q psy860 166 KLPFSSQNLYNT 177 (178)
Q Consensus 166 DEPt~gLD~~~~ 177 (178)
|||||+||+.++
T Consensus 163 DEPTs~LDi~~Q 174 (258)
T COG1120 163 DEPTSHLDIAHQ 174 (258)
T ss_pred CCCccccCHHHH
Confidence 999999999764
No 11
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-43 Score=277.24 Aligned_cols=156 Identities=17% Similarity=0.146 Sum_probs=142.0
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----HHhhccce
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----LFQYLSGI 85 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~~~~~~~i 85 (178)
+.+.+|+||||+|..|| |.+|+|++|+||| ||+++++|+..|++|++.++|.++.. ++++|+.|
T Consensus 15 ~~~~aL~~Vnl~I~~GE----~VaiIG~SGaGKS-------TLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~i 83 (258)
T COG3638 15 GGHQALKDVNLEINQGE----MVAIIGPSGAGKS-------TLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDI 83 (258)
T ss_pred CCceeeeeEeEEeCCCc----EEEEECCCCCcHH-------HHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhc
Confidence 44589999999999999 9999999999999 99999999999999999999988754 45778899
Q ss_pred EEecCCCCCCCCCCHHHHHHHH--------HHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860 86 GYCPQFNGINEHLTAQEMLECF--------SALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~--------~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
||+||.+++.+.++|.+|+..+ ..+.+...++++..+-++|+++|+.+.+.++.++|||||||||+|||||+
T Consensus 84 GmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~ 163 (258)
T COG3638 84 GMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV 163 (258)
T ss_pred eeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh
Confidence 9999999999999999999763 23345666677888999999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
++|++++.|||+++|||.+.
T Consensus 164 Q~pkiILADEPvasLDp~~a 183 (258)
T COG3638 164 QQPKIILADEPVASLDPESA 183 (258)
T ss_pred cCCCEEecCCcccccChhhH
Confidence 99999999999999999864
No 12
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-43 Score=279.65 Aligned_cols=152 Identities=20% Similarity=0.247 Sum_probs=132.9
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC-
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN- 92 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~- 92 (178)
+||+||||+|++|+ |.+|+||||+||| ||++.++|+.+|+.|+|.++|.+..+..+ +..||||||..
T Consensus 18 ~vl~~i~l~v~~G~----~~~iiGPNGaGKS-------TLlK~iLGll~p~~G~i~~~g~~~~~~~~-~~~IgYVPQ~~~ 85 (254)
T COG1121 18 PVLEDISLSVEKGE----ITALIGPNGAGKS-------TLLKAILGLLKPSSGEIKIFGKPVRKRRK-RLRIGYVPQKSS 85 (254)
T ss_pred eeeeccEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCcCCcceEEEcccccccccc-CCeEEEcCcccc
Confidence 59999999999999 8999999999999 99999999999999999999987755433 45799999965
Q ss_pred -CCCCCCCHHHHHHHHH--Hh--cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 93 -GINEHLTAQEMLECFS--AL--RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 93 -~l~~~ltv~e~l~~~~--~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
...+..||+|.+.+.. +. .....+++++.++++|+.+|+.+++++.+++|||||+|||.|||||+++|++|+|||
T Consensus 86 ~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDE 165 (254)
T COG1121 86 VDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDE 165 (254)
T ss_pred cCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecC
Confidence 4455789999998752 22 222344567899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|+|+.++
T Consensus 166 P~~gvD~~~~ 175 (254)
T COG1121 166 PFTGVDVAGQ 175 (254)
T ss_pred CcccCCHHHH
Confidence 9999999764
No 13
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-42 Score=268.42 Aligned_cols=156 Identities=20% Similarity=0.185 Sum_probs=139.3
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHh
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQ 80 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~ 80 (178)
.|-..||+|||+.|++++ ..|++||+||||| |++++++++... -+|+|.++|+++.+ ..+
T Consensus 17 Yg~~~aL~~i~l~i~~~~----VTAlIGPSGcGKS-------T~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 17 YGDKHALKDINLDIPKNK----VTALIGPSGCGKS-------TLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred ECchhhhccCceeccCCc----eEEEECCCCcCHH-------HHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 355689999999999999 7889999999999 999999999544 34999999999864 568
Q ss_pred hccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHH
Q psy860 81 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL 156 (178)
+|++||+|||.|+.|| +|++||+.+..+..+...++..+.+++.|+...|+ +..++.+..||||||||++|||||
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 9999999999999988 99999999999988876667778899999999886 455677889999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCCCCC
Q psy860 157 IGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 157 ~~~P~~lllDEPt~gLD~~~~ 177 (178)
+.+|++|+||||||+|||.+.
T Consensus 165 Av~PeVlLmDEPtSALDPIsT 185 (253)
T COG1117 165 AVKPEVLLMDEPTSALDPIST 185 (253)
T ss_pred hcCCcEEEecCcccccCchhH
Confidence 999999999999999999874
No 14
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1e-42 Score=285.33 Aligned_cols=160 Identities=24% Similarity=0.292 Sum_probs=145.8
Q ss_pred hhccC-ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccc
Q psy860 7 LSGIG-YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSG 84 (178)
Q Consensus 7 ~~~~~-~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ 84 (178)
.+.+| ..++|+||||+|++|| +.+++|+|||||| |++++++|+.+|++|+|.++|.+... ..++++.
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Ge----i~gllG~NGAGKT-------Tllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ 79 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGE----IFGLLGPNGAGKT-------TLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRR 79 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCe----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhh
Confidence 34556 5789999999999999 7779999999999 99999999999999999999988754 5678889
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 85 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
+||+||++.+++.+|++|++.+++..++.+....+++++++++.++|.+..++++.+||+||||||.||+||+++|+++|
T Consensus 80 igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli 159 (293)
T COG1131 80 IGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI 159 (293)
T ss_pred eEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999998876554556789999999999987789999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+||||.++
T Consensus 160 LDEPt~GLDp~~~ 172 (293)
T COG1131 160 LDEPTSGLDPESR 172 (293)
T ss_pred ECCCCcCCCHHHH
Confidence 9999999999764
No 15
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-43 Score=278.21 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=147.8
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc---cHHh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM---HLFQ 80 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~---~~~~ 80 (178)
|.|.++ .+++++|||+|++|| +.+|+|+|||||| ||++.++|+.+|++|.+.++|.++. ...+
T Consensus 11 ~~y~~~---~~~l~~v~~~i~~Ge----~~~i~G~nGsGKS-------TL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~ 76 (235)
T COG1122 11 FRYPGR---KAALKDVSLEIEKGE----RVLLIGPNGSGKS-------TLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLE 76 (235)
T ss_pred EEcCCC---ceeeeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHcCcCcCCCCEEEECCeeccchhhHHH
Confidence 567666 689999999999999 8889999999999 9999999999999999999999865 3678
Q ss_pred hccceEEecCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 81 YLSGIGYCPQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 81 ~~~~ig~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
+++.+|||||+|. .+..-||.+.+.|.....+.+.++.++++.++++.+++.+++++.+.+|||||||||+||.+|+++
T Consensus 77 ~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~ 156 (235)
T COG1122 77 LRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMG 156 (235)
T ss_pred hhcceEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcC
Confidence 8999999999984 667789999999998888888778889999999999999999999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|+||||||||||.++
T Consensus 157 P~iliLDEPta~LD~~~~ 174 (235)
T COG1122 157 PEILLLDEPTAGLDPKGR 174 (235)
T ss_pred CCEEEEcCCCCCCCHHHH
Confidence 999999999999999865
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-43 Score=266.97 Aligned_cols=154 Identities=22% Similarity=0.205 Sum_probs=145.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc-cHHhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM-HLFQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~-~~~~~~~~ig~v~Q~ 91 (178)
+.+++||||+++.|| ..+|+|+||+||+ |+++.+..++.|++|.++++|-+.. ++..+|++||.++..
T Consensus 15 v~AvrdVSF~ae~Ge----i~GlLG~NGAGKT-------T~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e 83 (245)
T COG4555 15 VQAVRDVSFEAEEGE----ITGLLGENGAGKT-------TLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGE 83 (245)
T ss_pred HhhhhheeEEeccce----EEEEEcCCCCCch-------hHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCC
Confidence 469999999999999 6669999999999 9999999999999999999999864 567889999999988
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
..+|..+|++||+.||+.++++.+.+.+.++.++.+.++|.+++|+++.+||.||||||+|||||+++|++++|||||||
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sG 163 (245)
T COG4555 84 RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSG 163 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCC
Confidence 89999999999999999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||..++
T Consensus 164 LDi~~~ 169 (245)
T COG4555 164 LDIRTR 169 (245)
T ss_pred ccHHHH
Confidence 998764
No 17
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-42 Score=278.46 Aligned_cols=160 Identities=18% Similarity=0.199 Sum_probs=142.6
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccc---ccccHHhhcc
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMT---NIMHLFQYLS 83 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~---~~~~~~~~~~ 83 (178)
.+..|..++++|||++|+.|| ..|++|||||||| |+++++.|+..|++|.|.++|+ +..+.....+
T Consensus 9 ~~~~~~~~a~~di~l~i~~Ge----~vaLlGpSGaGKs-------TlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R 77 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSGE----LVALLGPSGAGKS-------TLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77 (345)
T ss_pred hhhcccccccccceeeecCCc----EEEEECCCCCcHH-------HHHHHHhCcCCCCCceEEECCEeccchhccchhhc
Confidence 345566789999999999999 8889999999999 9999999999999999999999 5544444457
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcC--CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRG--IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+||||||++.+|++|||.+|+.|....+. .+..+.+.++.++|+.+.|+...+++|.+|||||||||++||||+.+|+
T Consensus 78 ~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~ 157 (345)
T COG1118 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPK 157 (345)
T ss_pred ceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCC
Confidence 89999999999999999999999876552 2345677789999999999999999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|+||||+++||...+
T Consensus 158 vLLLDEPf~ALDa~vr 173 (345)
T COG1118 158 VLLLDEPFGALDAKVR 173 (345)
T ss_pred eEeecCCchhhhHHHH
Confidence 9999999999998643
No 18
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=4.7e-42 Score=286.62 Aligned_cols=154 Identities=16% Similarity=0.134 Sum_probs=139.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|+||||+|++|| +.+|+|+|||||| ||+++++|+.+|++|++.++|.++... ...|++|||
T Consensus 18 ~~~L~~vsl~i~~Ge----i~gIiG~sGaGKS-------TLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~ 86 (343)
T TIGR02314 18 IQALNNVSLHVPAGQ----IYGVIGASGAGKS-------TLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGM 86 (343)
T ss_pred eEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEE
Confidence 479999999999999 7889999999999 999999999999999999999987642 235778999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++.+++.+||.||+.++....+.+..+.++++.++++.+|+.+..++++.+|||||||||+|||||+++|++|+|||
T Consensus 87 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDE 166 (343)
T TIGR02314 87 IFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred EECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 99999999999999999987665555444556778999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
|||+|||.++
T Consensus 167 Pts~LD~~t~ 176 (343)
T TIGR02314 167 ATSALDPATT 176 (343)
T ss_pred CcccCCHHHH
Confidence 9999999764
No 19
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.5e-42 Score=286.26 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=140.0
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
..++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.+....++.||||||+
T Consensus 16 ~~~~l~~vsl~i~~Ge----~~~llG~sGsGKS-------TLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 84 (356)
T PRK11650 16 KTQVIKGIDLDVADGE----FIVLVGPSGCGKS-------TLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQN 84 (356)
T ss_pred CCEEEeeeeEEEcCCC----EEEEECCCCCcHH-------HHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 3579999999999999 8889999999999 9999999999999999999999887654445789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+|+++||+||+.+.....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|+||||||+
T Consensus 85 ~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~ 164 (356)
T PRK11650 85 YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSN 164 (356)
T ss_pred ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999999999876655444445557789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 165 LD~~~r 170 (356)
T PRK11650 165 LDAKLR 170 (356)
T ss_pred CCHHHH
Confidence 998754
No 20
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-41 Score=283.28 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=141.0
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.+....++++|||||+
T Consensus 18 ~~~~l~~isl~i~~Ge----~~~llGpsGsGKS-------TLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~ 86 (351)
T PRK11432 18 SNTVIDNLNLTIKQGT----MVTLLGPSGCGKT-------TVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQS 86 (351)
T ss_pred CeEEEeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 3568999999999999 8889999999999 9999999999999999999999887654456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+|+++||.||+.|....++.+..+..+++.++++.+++.++.++++.+|||||||||+|||||+.+|++|+|||||++
T Consensus 87 ~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~ 166 (351)
T PRK11432 87 YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166 (351)
T ss_pred cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 99999999999999987665555555567899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+..+
T Consensus 167 LD~~~r 172 (351)
T PRK11432 167 LDANLR 172 (351)
T ss_pred CCHHHH
Confidence 998754
No 21
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=3.8e-41 Score=277.59 Aligned_cols=156 Identities=22% Similarity=0.265 Sum_probs=140.2
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~ 89 (178)
|...+|+||||+|++|| +.+|+|+||+||| |+++++.|+.+|++|++.++|.++.. ..+.+++|||||
T Consensus 18 ~~~~~l~~vsl~i~~Ge----i~gllGpNGaGKS-------TLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGE----CFGLLGPNGAGKT-------TTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred CCeEEEecceEEEeCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 34579999999999999 7779999999999 99999999999999999999998754 345678899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|++.+++.+|++||+.++...++.+..+..+++.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 99999999999999998777666554455667889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+||||.++
T Consensus 167 ~gLD~~~~ 174 (306)
T PRK13537 167 TGLDPQAR 174 (306)
T ss_pred cCCCHHHH
Confidence 99999865
No 22
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=3e-41 Score=283.47 Aligned_cols=157 Identities=22% Similarity=0.205 Sum_probs=141.3
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh----cc
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY----LS 83 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~----~~ 83 (178)
+|...+++||||+|++|| +.+|+|+|||||| ||+++++|+.+|++|+|.++|.++... .++ ++
T Consensus 3 ~~~~~~l~~vs~~i~~Ge----i~~l~G~sGsGKS-------TLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~ 71 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGE----IFVIMGLSGSGKS-------TTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRK 71 (363)
T ss_pred cCCceeEEeeEEEEcCCC----EEEEECCCCChHH-------HHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhC
Confidence 455679999999999999 8889999999999 999999999999999999999988652 333 67
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
.++||||++.+++++||+||+.+.....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 72 ~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iL 151 (363)
T TIGR01186 72 KIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDIL 151 (363)
T ss_pred cEEEEECCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 89999999999999999999998766655554455678899999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||++|||.++
T Consensus 152 LlDEP~saLD~~~r 165 (363)
T TIGR01186 152 LMDEAFSALDPLIR 165 (363)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999999764
No 23
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2.7e-41 Score=283.20 Aligned_cols=156 Identities=20% Similarity=0.190 Sum_probs=141.0
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|...+|+||||+++.|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.+....++.+|||||
T Consensus 15 ~~~~~l~~vs~~i~~Ge----~~~l~GpsGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 15 GAFTALKDISLSVKKGE----FVCLLGPSGCGKT-------TLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred CCeEEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 33568999999999999 8889999999999 999999999999999999999988765445678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+||++||+||+.|....++.++.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++++|||||+
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999999999987665555445556789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||+..+
T Consensus 164 ~LD~~~r 170 (353)
T TIGR03265 164 ALDARVR 170 (353)
T ss_pred cCCHHHH
Confidence 9998754
No 24
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-41 Score=274.46 Aligned_cols=160 Identities=19% Similarity=0.185 Sum_probs=148.6
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----HHhh
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----LFQY 81 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~~~~ 81 (178)
.+.+|++..++|+||+|+.|| +..|.|.+||||| ||+++++++.+|++|+|.++|+++.. +.++
T Consensus 35 ~~~tg~vvGv~~~sl~v~~Ge----IfViMGLSGSGKS-------TLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~ 103 (386)
T COG4175 35 LKKTGLVVGVNDASLDVEEGE----IFVIMGLSGSGKS-------TLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103 (386)
T ss_pred HHhhCcEEeeccceeeecCCe----EEEEEecCCCCHH-------HHHHHHhccCCCCCceEEECCcchhcCCHHHHHHH
Confidence 356788889999999999999 5569999999999 99999999999999999999999864 3444
Q ss_pred c-cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 82 L-SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 82 ~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
| +.+++|||+..++|+.||.||+.|.....++++.+.++++.++++.+||..+.+++|++|||||||||.|||||+.+|
T Consensus 104 Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~ 183 (386)
T COG4175 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDP 183 (386)
T ss_pred HhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCC
Confidence 4 679999999999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~~ 177 (178)
++|++|||+|+|||--|
T Consensus 184 ~IlLMDEaFSALDPLIR 200 (386)
T COG4175 184 DILLMDEAFSALDPLIR 200 (386)
T ss_pred CEEEecCchhhcChHHH
Confidence 99999999999999644
No 25
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.4e-41 Score=275.01 Aligned_cols=156 Identities=23% Similarity=0.323 Sum_probs=138.8
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~ 89 (178)
|..++|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|.++.. ..++++.+||+|
T Consensus 4 ~~~~~l~~vs~~i~~Ge----~~~l~G~NGaGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~ 72 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGE----VFGFLGPNGAGKT-------TTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVP 72 (302)
T ss_pred CCeeEEeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEec
Confidence 34579999999999999 7889999999999 99999999999999999999988754 345677899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|++.+++.+|++||+.++....+.+..+..+++.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||
T Consensus 73 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999999999998766655443444567889999999998899999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+||||.++
T Consensus 153 ~gLD~~~~ 160 (302)
T TIGR01188 153 TGLDPRTR 160 (302)
T ss_pred cCCCHHHH
Confidence 99999764
No 26
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=6e-41 Score=281.83 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=139.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc--ccccccccccccHHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA--AQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~--g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
.++|+||||+|+.|| +.+|+|+|||||| ||++++.|+.+|++ |++.++|+++......++.||||||
T Consensus 18 ~~~l~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ 86 (362)
T TIGR03258 18 NTVLDDLSLEIEAGE----LLALIGKSGCGKT-------TLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQ 86 (362)
T ss_pred eEEEeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEEC
Confidence 469999999999999 8889999999999 99999999999999 9999999988654445678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+|+++||+||+.|+....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|+|||||+
T Consensus 87 ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s 166 (362)
T TIGR03258 87 NYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166 (362)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 99999999999999987765555544556788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||+..+
T Consensus 167 ~LD~~~r 173 (362)
T TIGR03258 167 ALDANIR 173 (362)
T ss_pred cCCHHHH
Confidence 9998754
No 27
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-41 Score=256.61 Aligned_cols=159 Identities=19% Similarity=0.192 Sum_probs=141.3
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---Hhhcc
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLS 83 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~ 83 (178)
.+.++-..++++|||+|..|| .++++||||+||+ |.+-.+.|+.+|++|.|.+++.+++.+ .+.|.
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GE----iVGLLGPNGAGKT-------T~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGE----IVGLLGPNGAGKT-------TTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCc----EEEEECCCCCCce-------eEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 344566789999999999999 6669999999999 777889999999999999999999864 45678
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC--ChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV--KSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+|||+||++.+|-.+||+||+...........+ +.+++++++|+.|++.+.++++..+||||||+|+.|||||+.+|+
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 999999999999999999999988777654433 334457899999999999999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYN 176 (178)
Q Consensus 162 ~lllDEPt~gLD~~~ 176 (178)
+++||||++|+||.+
T Consensus 160 fiLLDEPFAGVDPia 174 (243)
T COG1137 160 FILLDEPFAGVDPIA 174 (243)
T ss_pred EEEecCCccCCCchh
Confidence 999999999999975
No 28
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=2e-40 Score=260.20 Aligned_cols=154 Identities=16% Similarity=0.177 Sum_probs=135.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..+++.++|
T Consensus 16 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 84 (216)
T TIGR00960 16 QPALDNLNFHITKGE----MVFLVGHSGAGKS-------TFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGM 84 (216)
T ss_pred eeEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceE
Confidence 369999999999999 7889999999999 999999999999999999999877532 235678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 85 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 164 (216)
T TIGR00960 85 VFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADE 164 (216)
T ss_pred EecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999876544433323345678899999999988999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 165 Pt~~LD~~~~ 174 (216)
T TIGR00960 165 PTGNLDPELS 174 (216)
T ss_pred CCCcCCHHHH
Confidence 9999999764
No 29
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-40 Score=280.00 Aligned_cols=155 Identities=17% Similarity=0.180 Sum_probs=140.2
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
..++|++|||+|+.|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.+....++.+|||||+
T Consensus 31 ~~~~l~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~ 99 (377)
T PRK11607 31 GQHAVDDVSLTIYKGE----IFALLGASGCGKS-------TLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQS 99 (377)
T ss_pred CEEEEeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCC
Confidence 3468999999999999 8889999999999 9999999999999999999999887655556789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+|+++||.||+.+.....+.+..+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|+|||||++
T Consensus 100 ~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~ 179 (377)
T PRK11607 100 YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGA 179 (377)
T ss_pred CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999999999999876555444445567889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+..+
T Consensus 180 LD~~~r 185 (377)
T PRK11607 180 LDKKLR 185 (377)
T ss_pred CCHHHH
Confidence 998754
No 30
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-40 Score=259.80 Aligned_cols=154 Identities=20% Similarity=0.217 Sum_probs=134.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++......++.++|+||++
T Consensus 13 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 81 (213)
T cd03259 13 VRALDDLSLTVEPGE----FLALLGPSGCGKT-------TLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDY 81 (213)
T ss_pred eeeecceeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCch
Confidence 469999999999999 7889999999999 99999999999999999999988765434456899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|++||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 82 ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99999999999987544333322233456888999999998889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 162 D~~~~ 166 (213)
T cd03259 162 DAKLR 166 (213)
T ss_pred CHHHH
Confidence 98764
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-40 Score=261.42 Aligned_cols=160 Identities=18% Similarity=0.147 Sum_probs=138.8
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---Hhh
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQY 81 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~ 81 (178)
.|..+...-+++++|||+|+.|| ..+|+|++||||| ||.+.++|+.+|+.|+|.++|.+.... ...
T Consensus 12 ~y~~~~~~~~~l~~VS~~i~~Ge----~lgivGeSGsGKS-------TL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~ 80 (252)
T COG1124 12 VYGGGKFAFHALNNVSLEIERGE----TLGIVGESGSGKS-------TLARLLAGLEKPSSGSILLDGKPLAPKKRAKAF 80 (252)
T ss_pred EecCCcchhhhhcceeEEecCCC----EEEEEcCCCCCHH-------HHHHHHhcccCCCCceEEECCcccCccccchhh
Confidence 35444444479999999999999 6669999999999 999999999999999999999876543 356
Q ss_pred ccceEEecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 82 LSGIGYCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 82 ~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
++.|.+|||+| .+.|..||.+.+.-+....+.+ +..+++.++++.+||. +.++++|.+|||||+|||+|||||+.
T Consensus 81 ~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~--~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~ 158 (252)
T COG1124 81 YRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLS--KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIP 158 (252)
T ss_pred ccceeEEecCCccccCcchhHHHHHhhhhccCCcc--HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhcc
Confidence 67899999997 5899999999998877666554 3345599999999997 78899999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++||||||||+||+..+
T Consensus 159 ~PklLIlDEptSaLD~siQ 177 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQ 177 (252)
T ss_pred CCCEEEecCchhhhcHHHH
Confidence 9999999999999998653
No 32
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=1.9e-40 Score=279.80 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=138.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++......++++|||||++
T Consensus 27 ~~~l~~vsl~i~~Ge----~~~LlGpsGsGKS-------TLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~ 95 (375)
T PRK09452 27 KEVISNLDLTINNGE----FLTLLGPSGCGKT-------TVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSY 95 (375)
T ss_pred eEEEeeeEEEEeCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCc
Confidence 468999999999999 8889999999999 99999999999999999999998866544567899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+|+++||.||+.|.....+.+..+..++++++++.++|.+..++++.+|||||||||+|||||+.+|++|+|||||++|
T Consensus 96 ~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~L 175 (375)
T PRK09452 96 ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL 175 (375)
T ss_pred ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcC
Confidence 99999999999998765544444444567899999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+..+
T Consensus 176 D~~~r 180 (375)
T PRK09452 176 DYKLR 180 (375)
T ss_pred CHHHH
Confidence 98754
No 33
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.1e-40 Score=260.33 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=134.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH-----h-hccceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF-----Q-YLSGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~-----~-~~~~ig 86 (178)
.++|+++||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|.++.... . .++.++
T Consensus 17 ~~il~~~s~~i~~G~----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 85 (218)
T cd03255 17 VQALKGVSLSIEKGE----FVAIVGPSGSGKS-------TLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIG 85 (218)
T ss_pred eeEEeeeEEEEcCCC----EEEEEcCCCCCHH-------HHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEE
Confidence 469999999999999 7889999999999 9999999999999999999998875421 2 346799
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|+||++.+++.+|++||+.+.....+....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|++||||
T Consensus 86 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD 165 (218)
T cd03255 86 FVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILAD 165 (218)
T ss_pred EEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEc
Confidence 99999999999999999988654443322233457888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 166 EP~~~LD~~~~ 176 (218)
T cd03255 166 EPTGNLDSETG 176 (218)
T ss_pred CCcccCCHHHH
Confidence 99999999764
No 34
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=2.8e-40 Score=277.05 Aligned_cols=156 Identities=17% Similarity=0.195 Sum_probs=137.9
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|++|||+|+.|| +.+|+|+|||||| ||++++.|+.+|++|+|+++|+++......++.++||||
T Consensus 13 ~~~~~l~~isl~i~~Ge----~~~llGpsGsGKS-------TLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 13 GRTQVLNDISLDIPSGQ----MVALLGPSGSGKT-------TLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred CCeEEEEEeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 33579999999999999 8889999999999 999999999999999999999988654444568999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhc----CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 91 FNGINEHLTAQEMLECFSALR----GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
++.+++++||.||+.+..... ..+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|+||
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999865432 2223344568899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 162 EP~s~LD~~~r 172 (353)
T PRK10851 162 EPFGALDAQVR 172 (353)
T ss_pred CCCccCCHHHH
Confidence 99999998764
No 35
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-40 Score=278.26 Aligned_cols=154 Identities=16% Similarity=0.175 Sum_probs=137.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|+.|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++......++.++|+||++
T Consensus 16 ~~vl~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~ 84 (369)
T PRK11000 16 VVISKDINLDIHEGE----FVVFVGPSGCGKS-------TLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSY 84 (369)
T ss_pred eEEEeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCc
Confidence 469999999999999 8889999999999 99999999999999999999998865444456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++++||+||+.+.....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 85 ~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~L 164 (369)
T PRK11000 85 ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164 (369)
T ss_pred ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 99999999999998765544443344567899999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 165 D~~~~ 169 (369)
T PRK11000 165 DAALR 169 (369)
T ss_pred CHHHH
Confidence 98764
No 36
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6.3e-40 Score=273.72 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=138.9
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~ 89 (178)
|...+|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..+.++.+||+|
T Consensus 52 ~~~~~l~~is~~i~~Ge----i~gLlGpNGaGKS-------TLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 52 GDKAVVNGLSFTVASGE----CFGLLGPNGAGKS-------TIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred CCEEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence 44569999999999999 7889999999999 99999999999999999999998754 345677899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|++.+++.+|+.||+.++...++....+..+++.++++.+++.+..++++.+|||||||||+||+||+++|++|||||||
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99999999999999998766555443344567788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+||||.++
T Consensus 201 ~gLD~~~r 208 (340)
T PRK13536 201 TGLDPHAR 208 (340)
T ss_pred CCCCHHHH
Confidence 99999765
No 37
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-40 Score=260.41 Aligned_cols=154 Identities=17% Similarity=0.150 Sum_probs=134.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... ..+++.++|
T Consensus 13 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 81 (235)
T cd03261 13 RTVLKGVDLDVRRGE----ILAIIGPSGSGKS-------TLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGM 81 (235)
T ss_pred EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEE
Confidence 469999999999999 8889999999999 999999999999999999999876542 346778999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 88 CPQFNGINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
+||++.+++.+|+.||+.+..... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus 82 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllD 161 (235)
T cd03261 82 LFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYD 161 (235)
T ss_pred EccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 999999999999999998764332 2222333456888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 162 EPt~~LD~~~~ 172 (235)
T cd03261 162 EPTAGLDPIAS 172 (235)
T ss_pred CCcccCCHHHH
Confidence 99999999764
No 38
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-40 Score=258.10 Aligned_cols=151 Identities=21% Similarity=0.251 Sum_probs=133.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. .++.++|+||++
T Consensus 17 ~~il~~vs~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~---~~~~i~~v~q~~ 82 (220)
T cd03293 17 VTALEDISLSVEEGE----FVALVGPSGCGKS-------TLLRIIAGLERPTSGEVLVDGEPVTG---PGPDRGYVFQQD 82 (220)
T ss_pred eEEEeceeEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECcc---ccCcEEEEeccc
Confidence 579999999999999 7889999999999 99999999999999999999987653 356799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|++||+.+.....+....+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 83 ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 98888999999987654443332333567889999999998889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 163 D~~~~ 167 (220)
T cd03293 163 DALTR 167 (220)
T ss_pred CHHHH
Confidence 99764
No 39
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-40 Score=274.04 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=137.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|.++... ..++++|+|
T Consensus 18 ~~il~~vsl~i~~Ge----i~~iiG~nGsGKS-------TLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~ 86 (343)
T PRK11153 18 IHALNNVSLHIPAGE----IFGVIGASGAGKS-------TLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGM 86 (343)
T ss_pred eEEEEeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEE
Confidence 479999999999999 7889999999999 999999999999999999999987542 234678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++.+++.+|+.||+.+.....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 87 v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDE 166 (343)
T PRK11153 87 IFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDE 166 (343)
T ss_pred EeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999999999999999987655544433445678899999999998999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 167 Pts~LD~~~~ 176 (343)
T PRK11153 167 ATSALDPATT 176 (343)
T ss_pred CcccCCHHHH
Confidence 9999999764
No 40
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=8.1e-40 Score=256.96 Aligned_cols=153 Identities=22% Similarity=0.295 Sum_probs=135.9
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQFN 92 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~~ 92 (178)
++++++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ...+++.++|+||++
T Consensus 19 ~il~~~sl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 87 (218)
T cd03266 19 QAVDGVSFTVKPGE----VTGLLGPNGAGKT-------TTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDST 87 (218)
T ss_pred eeecceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCc
Confidence 69999999999999 8889999999999 99999999999999999999988754 345567899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|+|||||+||
T Consensus 88 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 167 (218)
T cd03266 88 GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGL 167 (218)
T ss_pred ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence 99999999999987655444333344567889999999998899999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 168 D~~~~ 172 (218)
T cd03266 168 DVMAT 172 (218)
T ss_pred CHHHH
Confidence 98764
No 41
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-40 Score=259.39 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=134.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhhc-cceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYL-SGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~-~~ig 86 (178)
.++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|+++... .+.+ +.++
T Consensus 22 ~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 90 (233)
T PRK11629 22 TDVLHNVSFSIGEGE----MMAIVGSSGSGKS-------TLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLG 90 (233)
T ss_pred eeeEEeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEE
Confidence 469999999999999 7889999999999 999999999999999999999887542 1232 5799
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|+||++.+++.+|++||+.+.....+....+.++++.++++.+++.+..++.+.+|||||||||+|||||+.+|+++|||
T Consensus 91 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLD 170 (233)
T PRK11629 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLAD 170 (233)
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999999999987544333333334567889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 171 EPt~~LD~~~~ 181 (233)
T PRK11629 171 EPTGNLDARNA 181 (233)
T ss_pred CCCCCCCHHHH
Confidence 99999999764
No 42
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-40 Score=248.78 Aligned_cols=160 Identities=16% Similarity=0.156 Sum_probs=145.4
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-------
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------- 77 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------- 77 (178)
...+.+|...+|++||+.-.+|+ ..+|+|-+|+||| |+++|++-+..|++|.|.++|+++.-
T Consensus 11 dlHK~~G~~eVLKGvSL~A~~Gd----VisIIGsSGSGKS-------TfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~ 79 (256)
T COG4598 11 DLHKRYGEHEVLKGVSLQANAGD----VISIIGSSGSGKS-------TFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79 (256)
T ss_pred HHHhhcccchhhcceeeecCCCC----EEEEecCCCCchh-------HHHHHHHhhcCCCCceEEECCeEEEeeeCCCCC
Confidence 34678888999999999999999 7779999999999 99999999999999999999998641
Q ss_pred --------HHhhccceEEecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHH
Q psy860 78 --------LFQYLSGIGYCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR 148 (178)
Q Consensus 78 --------~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQ 148 (178)
+..+|.+.|+|||+.+++.++||.||+.-.+ ..-+.++.+..++++.+|.++|+.+..+.+|..|||||||
T Consensus 80 l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQ 159 (256)
T COG4598 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQ 159 (256)
T ss_pred eeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHH
Confidence 2356788999999999999999999997643 4457777888899999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860 149 KLSTAMALIGDRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 149 Rv~IAraL~~~P~~lllDEPt~gLD~~ 175 (178)
|++|||||+.+|+++++|||||+|||.
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPE 186 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPE 186 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHH
Confidence 999999999999999999999999995
No 43
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=8.2e-40 Score=256.11 Aligned_cols=154 Identities=16% Similarity=0.166 Sum_probs=135.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++++||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++......+++++|+||++
T Consensus 13 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~ 81 (213)
T cd03301 13 VTALDDLNLDIADGE----FVVLLGPSGCGKT-------TTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNY 81 (213)
T ss_pred eeeeeceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecCh
Confidence 479999999999999 7889999999999 99999999999999999999988754433346799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++..|++||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++|||||+||
T Consensus 82 ~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~L 161 (213)
T cd03301 82 ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161 (213)
T ss_pred hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 98889999999987654443333334557888999999998899999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 162 D~~~~ 166 (213)
T cd03301 162 DAKLR 166 (213)
T ss_pred CHHHH
Confidence 99764
No 44
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.3e-39 Score=267.80 Aligned_cols=155 Identities=17% Similarity=0.250 Sum_probs=139.2
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQ 90 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q 90 (178)
...+|+||||+|++|| +.+|+|+||+||| |+++++.|+.+|++|+|.++|.++.. ..++++++||+||
T Consensus 14 ~~~~l~~is~~i~~Ge----i~~l~G~NGaGKT-------TLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q 82 (301)
T TIGR03522 14 TQNALDEVSFEAQKGR----IVGFLGPNGAGKS-------TTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPE 82 (301)
T ss_pred CEEEEEEeEEEEeCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecC
Confidence 3569999999999999 7779999999999 99999999999999999999988754 3456778999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++.+|+.||+.++...++.+..+..++++++++.+++.+..++++.+|||||||||+||+||+++|++|||||||+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999999999999987766655444445678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
||||.++
T Consensus 163 gLD~~~~ 169 (301)
T TIGR03522 163 GLDPNQL 169 (301)
T ss_pred cCCHHHH
Confidence 9999764
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.7e-39 Score=255.77 Aligned_cols=154 Identities=21% Similarity=0.266 Sum_probs=135.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~ 91 (178)
.++|+||||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..+.++.++|+||+
T Consensus 13 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (220)
T cd03265 13 FEAVRGVSFRVRRGE----IFGLLGPNGAGKT-------TTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQD 81 (220)
T ss_pred EEeeeceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCC
Confidence 479999999999999 8889999999999 99999999999999999999987643 23456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+|+++++.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+|
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 82 LSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred ccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 99999999999998865554443333456788999999999888999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 162 LD~~~~ 167 (220)
T cd03265 162 LDPQTR 167 (220)
T ss_pred CCHHHH
Confidence 999764
No 46
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.6e-39 Score=254.67 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=134.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|+|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..+++.++|
T Consensus 15 ~~il~~is~~i~~G~----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (214)
T TIGR02673 15 VAALHDVSLHIRKGE----FLFLTGPSGAGKT-------TLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGV 83 (214)
T ss_pred ceeecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEE
Confidence 469999999999999 7789999999999 999999999999999999999887542 235678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|+++||||
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDE 163 (214)
T TIGR02673 84 VFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADE 163 (214)
T ss_pred EecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 99999999999999999886544333323345678899999999988899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 164 Pt~~LD~~~~ 173 (214)
T TIGR02673 164 PTGNLDPDLS 173 (214)
T ss_pred CcccCCHHHH
Confidence 9999999764
No 47
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.4e-39 Score=256.03 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=133.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhhc-cceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYL-SGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~-~~ig 86 (178)
.++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..++ +.++
T Consensus 18 ~~~l~~isl~i~~G~----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 86 (221)
T TIGR02211 18 TRVLKGVSLSIGKGE----IVAIVGSSGSGKS-------TLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLG 86 (221)
T ss_pred eEeEeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEE
Confidence 469999999999999 7889999999999 999999999999999999999877542 1233 5799
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|+||++.+++.+|++||+.+..........+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|++||||
T Consensus 87 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlD 166 (221)
T TIGR02211 87 FIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLAD 166 (221)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 99999999989999999987543333222233456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 167 EPt~~LD~~~~ 177 (221)
T TIGR02211 167 EPTGNLDNNNA 177 (221)
T ss_pred CCCCcCCHHHH
Confidence 99999999764
No 48
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.9e-39 Score=267.06 Aligned_cols=155 Identities=19% Similarity=0.191 Sum_probs=135.8
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQ 90 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q 90 (178)
..++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ....++.+||+||
T Consensus 16 ~~~~l~~vsl~i~~Ge----~~~l~G~NGaGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q 84 (303)
T TIGR01288 16 DKVVVNDLSFTIARGE----CFGLLGPNGAGKS-------TIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQ 84 (303)
T ss_pred CeEEEcceeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEec
Confidence 3569999999999999 7889999999999 99999999999999999999987643 2345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++.+|+.||+.++....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999999999999876554443333334567889999999988999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 165 gLD~~~~ 171 (303)
T TIGR01288 165 GLDPHAR 171 (303)
T ss_pred CCCHHHH
Confidence 9999764
No 49
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3e-39 Score=242.02 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=144.9
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH-----hh
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF-----QY 81 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~-----~~ 81 (178)
.++.+-.++|++|++.|.+|| -.+|+|++|+||| ||+..+.|+..|++|+|.+.|+...++. .+
T Consensus 17 g~~~~~l~IL~~V~L~v~~Ge----~vaiVG~SGSGKS-------TLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 17 GQGEGELSILKGVELVVKRGE----TVAIVGPSGSGKS-------TLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred cCCCcceeEeecceEEecCCc----eEEEEcCCCCcHH-------hHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 345566899999999999999 7889999999999 9999999999999999999999887642 34
Q ss_pred c-cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 82 L-SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 82 ~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
| +++|+|||...+.|++|..||+..+..+.+....+.++.+.++|+.+||.+..+.+|.+||||+||||+||||++..|
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P 165 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRP 165 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCC
Confidence 3 679999999999999999999999998888666677778999999999999999999999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~ 176 (178)
++||.||||..||-.+
T Consensus 166 ~vLfADEPTGNLD~~T 181 (228)
T COG4181 166 DVLFADEPTGNLDRAT 181 (228)
T ss_pred CEEeccCCCCCcchhH
Confidence 9999999999999653
No 50
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.8e-39 Score=254.17 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=134.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|+++||++++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..+++.++|
T Consensus 14 ~~~l~~~sl~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 82 (214)
T cd03292 14 TAALDGINISISAGE----FVFLVGPSGAGKS-------TLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGV 82 (214)
T ss_pred ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEE
Confidence 369999999999999 7889999999999 999999999999999999999877532 245678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++.+++.+|+.||+.++....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++|||
T Consensus 83 v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 162 (214)
T cd03292 83 VFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADE 162 (214)
T ss_pred EecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999999999999999886544433333344578889999999988899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 163 Pt~~LD~~~~ 172 (214)
T cd03292 163 PTGNLDPDTT 172 (214)
T ss_pred CCCcCCHHHH
Confidence 9999999764
No 51
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-39 Score=275.05 Aligned_cols=159 Identities=17% Similarity=0.135 Sum_probs=139.4
Q ss_pred hccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H---h-h
Q psy860 8 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F---Q-Y 81 (178)
Q Consensus 8 ~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~---~-~ 81 (178)
+..|.+.+|++|||+|++|| +.+|+|+||+||| ||+++++|+.+|++|+|+++|.++... . + .
T Consensus 36 ~~~~~~~~L~~isl~i~~Ge----i~~LvG~NGsGKS-------TLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~ 104 (400)
T PRK10070 36 EKTGLSLGVKDASLAIEEGE----IFVIMGLSGSGKS-------TMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104 (400)
T ss_pred hhcCCeEEEEeEEEEEcCCC----EEEEECCCCchHH-------HHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHH
Confidence 34466679999999999999 8889999999999 999999999999999999999987542 1 2 2
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+++++|+||++.+++++|+.||+.+.....+.+..+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|+
T Consensus 105 ~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~ 184 (400)
T PRK10070 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPD 184 (400)
T ss_pred hCCEEEEECCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 35799999999999999999999987655554444445678899999999999999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|||||||+|||+.++
T Consensus 185 iLLLDEPts~LD~~~r 200 (400)
T PRK10070 185 ILLMDEAFSALDPLIR 200 (400)
T ss_pred EEEEECCCccCCHHHH
Confidence 9999999999999764
No 52
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-39 Score=252.42 Aligned_cols=155 Identities=23% Similarity=0.210 Sum_probs=134.8
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---Hhhccce
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGI 85 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~i 85 (178)
+.|-.+||++|||+++.|| +++++|+||+||| |+++++.|+.++.+|+|.++|++++.. ...|.+|
T Consensus 12 ~YG~~~~L~gvsl~v~~Ge----iv~llG~NGaGKT-------TlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 12 GYGKIQALRGVSLEVERGE----IVALLGRNGAGKT-------TLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred cccceeEEeeeeeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 4566799999999999999 7779999999999 999999999999999999999999764 3467899
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-CCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-LTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
+||||...+|+.+||+||+.+....... +.......+++.+.|- |.+..+++.++|||||||.++|||||+.+|++|+
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~~~~-~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL 159 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYARRD-KEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhcccc-cccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999986544321 1122223777888874 6788999999999999999999999999999999
Q ss_pred eeCCCCCCCCC
Q psy860 165 QKLPFSSQNLY 175 (178)
Q Consensus 165 lDEPt~gLD~~ 175 (178)
|||||.||-|.
T Consensus 160 LDEPs~GLaP~ 170 (237)
T COG0410 160 LDEPSEGLAPK 170 (237)
T ss_pred ecCCccCcCHH
Confidence 99999999875
No 53
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-39 Score=264.13 Aligned_cols=154 Identities=15% Similarity=0.148 Sum_probs=134.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v 88 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|.++.. ..+.++.+|||
T Consensus 20 ~~~l~~vs~~i~~Ge----~~~i~G~nGaGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v 88 (287)
T PRK13637 20 KKALDNVNIEIEDGE----FVGLIGHTGSGKS-------TLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLV 88 (287)
T ss_pred cceeeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEE
Confidence 469999999999999 8889999999999 99999999999999999999998754 23567789999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC--ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT--EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
||++. .++..||+||+.+.....+....+..+++.++++.++|. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 89 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llll 168 (287)
T PRK13637 89 FQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILIL 168 (287)
T ss_pred ecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99974 334679999998765544554445566789999999997 678999999999999999999999999999999
Q ss_pred eCCCCCCCCCCC
Q psy860 166 KLPFSSQNLYNT 177 (178)
Q Consensus 166 DEPt~gLD~~~~ 177 (178)
||||+|||+.++
T Consensus 169 DEPt~gLD~~~~ 180 (287)
T PRK13637 169 DEPTAGLDPKGR 180 (287)
T ss_pred ECCccCCCHHHH
Confidence 999999999764
No 54
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-39 Score=254.72 Aligned_cols=158 Identities=18% Similarity=0.283 Sum_probs=147.4
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG 86 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig 86 (178)
.+.+|...|++||||++++|++++ ++|+||+||+ |.++.++++++|++|.|.++|.++.. ..+.+||
T Consensus 9 tK~Fg~k~av~~isf~v~~G~i~G----llG~NGAGKT-------TtfRmILglle~~~G~I~~~g~~~~~--~~~~rIG 75 (300)
T COG4152 9 TKSFGDKKAVDNISFEVPPGEIFG----LLGPNGAGKT-------TTFRMILGLLEPTEGEITWNGGPLSQ--EIKNRIG 75 (300)
T ss_pred hhccCceeeecceeeeecCCeEEE----eecCCCCCcc-------chHHHHhccCCccCceEEEcCcchhh--hhhhhcc
Confidence 467788899999999999999655 9999999999 88899999999999999999987653 2345799
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|+|++.++|+.+||.|.+.|++.+++++..+.+..+..||+++++..+..+++.+||.|||||+.+..|++++|+++|||
T Consensus 76 yLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILD 155 (300)
T COG4152 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILD 155 (300)
T ss_pred cChhhhccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
||+|||||.+.
T Consensus 156 EPFSGLDPVN~ 166 (300)
T COG4152 156 EPFSGLDPVNV 166 (300)
T ss_pred CCccCCChhhH
Confidence 99999999875
No 55
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-39 Score=251.84 Aligned_cols=152 Identities=20% Similarity=0.276 Sum_probs=134.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.+++++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..++.++|+||++
T Consensus 13 ~~~l~~v~~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~--~~~~~i~~~~q~~ 79 (210)
T cd03269 13 VTALDDISFSVEKGE----IFGLLGPNGAGKT-------TTIRMILGIILPDSGEVLFDGKPLDI--AARNRIGYLPEER 79 (210)
T ss_pred EEEEeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCCchhH--HHHccEEEeccCC
Confidence 469999999999999 7889999999999 99999999999999999999987653 4466899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.||+.+.....+....+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99999999999987655444433344567889999999998889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 160 D~~~~ 164 (210)
T cd03269 160 DPVNV 164 (210)
T ss_pred CHHHH
Confidence 98764
No 56
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=3.6e-39 Score=254.17 Aligned_cols=154 Identities=17% Similarity=0.140 Sum_probs=134.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|++|||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... ..+++.++|
T Consensus 15 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 83 (222)
T PRK10908 15 RQALQGVTFHMRPGE----MAFLTGHSGAGKS-------TLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGM 83 (222)
T ss_pred CeEEeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEE
Confidence 469999999999999 7889999999999 999999999999999999999877542 235678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|++|+|||
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (222)
T PRK10908 84 IFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADE 163 (222)
T ss_pred EecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99999988999999999876544433333334567889999999988899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 164 Pt~~LD~~~~ 173 (222)
T PRK10908 164 PTGNLDDALS 173 (222)
T ss_pred CCCcCCHHHH
Confidence 9999999754
No 57
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=4.9e-39 Score=247.92 Aligned_cols=154 Identities=16% Similarity=0.069 Sum_probs=130.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v 88 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|.+.++|.++.. ...+++.++|+
T Consensus 5 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 73 (190)
T TIGR01166 5 PEVLKGLNFAAERGE----VLALLGANGAGKS-------TLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLV 73 (190)
T ss_pred cceecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEE
Confidence 479999999999999 7889999999999 99999999999999999999987641 23456789999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
||++. .++..|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||
T Consensus 74 ~q~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 74 FQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ecChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99973 33457999999875443333223334568889999999988999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 154 Pt~~LD~~~~ 163 (190)
T TIGR01166 154 PTAGLDPAGR 163 (190)
T ss_pred CcccCCHHHH
Confidence 9999998754
No 58
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.4e-39 Score=252.61 Aligned_cols=154 Identities=25% Similarity=0.339 Sum_probs=135.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~ 91 (178)
.++|+||||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..++++.++|+||+
T Consensus 15 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~ 83 (220)
T cd03263 15 KPAVDDLSLNVYKGE----IFGLLGHNGAGKT-------TTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQF 83 (220)
T ss_pred ceeecceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCc
Confidence 479999999999999 8889999999999 99999999999999999999988754 23456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+|+.+|+.+.....+.+..+..+++.++++.+++.+..++++.+||+||||||+|||||+.+|+++||||||+|
T Consensus 84 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~ 163 (220)
T cd03263 84 DALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSG 163 (220)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 99998999999998866554433333456788999999999888999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 164 LD~~~~ 169 (220)
T cd03263 164 LDPASR 169 (220)
T ss_pred CCHHHH
Confidence 999754
No 59
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.1e-39 Score=257.26 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=133.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++......+++++|+||++
T Consensus 15 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 83 (239)
T cd03296 15 FVALDDVSLDIPSGE----LVALLGPSGSGKT-------TLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHY 83 (239)
T ss_pred EEeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCC
Confidence 469999999999999 7889999999999 99999999999999999999987754333356799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCC----CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 93 GINEHLTAQEMLECFSALRGI----PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
.+++.+|+.||+.+....... ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++||||
T Consensus 84 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 163 (239)
T cd03296 84 ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEP 163 (239)
T ss_pred cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999899999999875433221 1112345678899999999888999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 164 ~~~LD~~~~ 172 (239)
T cd03296 164 FGALDAKVR 172 (239)
T ss_pred cccCCHHHH
Confidence 999999764
No 60
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=5.9e-39 Score=250.93 Aligned_cols=154 Identities=19% Similarity=0.151 Sum_probs=132.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ...+++.++|+||
T Consensus 14 ~~il~~vs~~i~~G~----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (211)
T cd03225 14 RPALDDISLTIKKGE----FVLIVGPNGSGKS-------TLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82 (211)
T ss_pred eeeecceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEec
Confidence 469999999999999 7789999999999 99999999999999999999987753 3445678999999
Q ss_pred CCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 91 FNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 91 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
++. .++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||
T Consensus 83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 975 3667899999987544333222233456888999999998889999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 163 ~~LD~~~~ 170 (211)
T cd03225 163 AGLDPAGR 170 (211)
T ss_pred ccCCHHHH
Confidence 99999764
No 61
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=7.9e-39 Score=249.84 Aligned_cols=150 Identities=21% Similarity=0.238 Sum_probs=134.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+++||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++....+.++.++|+||++
T Consensus 13 ~~~l~~~~~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (208)
T cd03268 13 KRVLDDISLHVKKGE----IYGFLGPNGAGKT-------TTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAP 81 (208)
T ss_pred eEeEeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCC
Confidence 479999999999999 8889999999999 99999999999999999999988755445567899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.||+.++...... ..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+||
T Consensus 82 ~~~~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 82 GFYPNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred ccCccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 999999999999886543322 2456888999999998889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 158 D~~~~ 162 (208)
T cd03268 158 DPDGI 162 (208)
T ss_pred CHHHH
Confidence 99764
No 62
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=6e-39 Score=250.13 Aligned_cols=149 Identities=21% Similarity=0.101 Sum_probs=129.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ...+++++|+||++
T Consensus 13 ~~~l~~v~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~i~~~~q~~ 80 (205)
T cd03226 13 TEILDDLSLDLYAGE----IIALTGKNGAGKT-------TLAKILAGLIKESSGSILLNGKPIKA-KERRKSIGYVMQDV 80 (205)
T ss_pred CceeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEhhh-HHhhcceEEEecCh
Confidence 479999999999999 7889999999999 99999999999999999999987754 34566899999997
Q ss_pred C-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 93 G-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 93 ~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
. .++..|+.||+.++..... ...+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+|
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 156 (205)
T cd03226 81 DYQLFTDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156 (205)
T ss_pred hhhhhhccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 4 3446799999987543221 2235788999999999889999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 157 LD~~~~ 162 (205)
T cd03226 157 LDYKNM 162 (205)
T ss_pred CCHHHH
Confidence 999764
No 63
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.5e-39 Score=270.28 Aligned_cols=160 Identities=19% Similarity=0.269 Sum_probs=140.0
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccc----cccc-----
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMT----NIMH----- 77 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~----~~~~----- 77 (178)
.+.+|.+.+++||||+|++|| +.+|+|+||+||| ||+++++|+.+|++|+|.++|+ ++..
T Consensus 31 ~~~~g~~~~l~~vsf~i~~Ge----i~~I~G~nGsGKS-------TLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~ 99 (382)
T TIGR03415 31 LDETGLVVGVANASLDIEEGE----ICVLMGLSGSGKS-------SLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAAT 99 (382)
T ss_pred HHhhCCEEEEEeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCcEEEECCEecccccccCCHHH
Confidence 355677889999999999999 7889999999999 9999999999999999999996 3322
Q ss_pred HHhhc-cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH
Q psy860 78 LFQYL-SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 78 ~~~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL 156 (178)
..+.| ++++|+||++.+++++|+.||+.+.....+.+..+.++++.++++.++|.+..++++.+|||||||||+|||||
T Consensus 100 l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARAL 179 (382)
T TIGR03415 100 LRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAF 179 (382)
T ss_pred HHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 22333 57999999999999999999999876555554445556789999999999999999999999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCCCCC
Q psy860 157 IGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 157 ~~~P~~lllDEPt~gLD~~~~ 177 (178)
+.+|++|||||||+||||.++
T Consensus 180 a~~P~ILLlDEPts~LD~~~r 200 (382)
T TIGR03415 180 AMDADILLMDEPFSALDPLIR 200 (382)
T ss_pred hcCCCEEEEECCCccCCHHHH
Confidence 999999999999999999764
No 64
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.3e-39 Score=253.68 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=134.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEEe
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGYC 88 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~v 88 (178)
++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... .+.++.++|+
T Consensus 19 ~il~~~s~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 87 (233)
T cd03258 19 TALKDVSLSVPKGE----IFGIIGRSGAGKS-------TLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMI 87 (233)
T ss_pred eeeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEE
Confidence 79999999999999 7889999999999 999999999999999999999887532 2346789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
||++.+++.+|+.||+.+.....+.......+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||||
T Consensus 88 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP 167 (233)
T cd03258 88 FQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEA 167 (233)
T ss_pred ccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 99999999999999998765443332223345688899999999888999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 168 ~~~LD~~~~ 176 (233)
T cd03258 168 TSALDPETT 176 (233)
T ss_pred CCcCCHHHH
Confidence 999999764
No 65
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.6e-39 Score=249.01 Aligned_cols=154 Identities=18% Similarity=0.120 Sum_probs=134.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------HhhccceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQYLSGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~~~~ig 86 (178)
.++|++|||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ...+++++
T Consensus 11 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 11 KIILDDLNLTIEKGK----MYAIIGESGSGKS-------TLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred EEEEeceEEEEeCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 469999999999999 7779999999999 999999999999999999999985421 23467899
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|++|++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999988544433333334567889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 160 EPt~~LD~~~~ 170 (206)
T TIGR03608 160 EPTGSLDPKNR 170 (206)
T ss_pred CCcCCCCHHHH
Confidence 99999998764
No 66
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-38 Score=258.53 Aligned_cols=157 Identities=19% Similarity=0.202 Sum_probs=135.3
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H---hh-cc
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F---QY-LS 83 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~---~~-~~ 83 (178)
+|..++|+||||+|+.|| +.+|+|+||+||| ||++++.|+.+|++|++.++|.++... . +. ++
T Consensus 34 ~~~~~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 34 TGQTVGVNDVSLDVREGE----IFVIMGLSGSGKS-------TLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred cCCceEeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 345678999999999999 8889999999999 999999999999999999999877542 1 12 35
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
+++|+||++.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 79999999999999999999987654433332333456888999999998899999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 183 lLDEPt~~LD~~~~ 196 (269)
T cd03294 183 LMDEAFSALDPLIR 196 (269)
T ss_pred EEcCCCccCCHHHH
Confidence 99999999999764
No 67
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.3e-38 Score=252.34 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=133.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~ 89 (178)
.++|++|||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... .. .++.++|+|
T Consensus 13 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (232)
T cd03218 13 RKVVNGVSLSVKQGE----IVGLLGPNGAGKT-------TTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLP 81 (232)
T ss_pred EEeeccceeEecCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEec
Confidence 469999999999999 7889999999999 999999999999999999999876542 22 345799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|++.+++.+|++||+.++....+....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|++|+|||||
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 161 (232)
T cd03218 82 QEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPF 161 (232)
T ss_pred CCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99999999999999987644333322233456788999999998889999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 162 ~~LD~~~~ 169 (232)
T cd03218 162 AGVDPIAV 169 (232)
T ss_pred ccCCHHHH
Confidence 99999764
No 68
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.2e-39 Score=250.75 Aligned_cols=160 Identities=20% Similarity=0.149 Sum_probs=141.2
Q ss_pred hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH---hhc
Q psy860 6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF---QYL 82 (178)
Q Consensus 6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~---~~~ 82 (178)
..+.+|...|++||||+|++|| +.+|+||||+||| |++.++.|+.+|++|+|.++|+++.... -.+
T Consensus 10 l~k~FGGl~Al~~Vsl~v~~Ge----i~~LIGPNGAGKT-------TlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar 78 (250)
T COG0411 10 LSKRFGGLTAVNDVSLEVRPGE----IVGLIGPNGAGKT-------TLFNLITGFYKPSSGTVIFRGRDITGLPPHRIAR 78 (250)
T ss_pred ceeecCCEEEEeceeEEEcCCe----EEEEECCCCCCce-------eeeeeecccccCCCceEEECCcccCCCCHHHHHh
Confidence 3577899999999999999999 7889999999999 9999999999999999999999997642 346
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhc-------CC-----CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHH
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALR-------GI-----PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-------~~-----~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv 150 (178)
.+|+..||...+|+++||.||+......+ +. ...+..+++.++|+.+||.+.+++++++||+|||+|+
T Consensus 79 ~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~L 158 (250)
T COG0411 79 LGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRL 158 (250)
T ss_pred ccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHH
Confidence 78999999999999999999998753311 11 1234556788999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
.|||||+++|++|+||||++||.|..
T Consensus 159 EIArALa~~P~lLLLDEPaAGln~~e 184 (250)
T COG0411 159 EIARALATQPKLLLLDEPAAGLNPEE 184 (250)
T ss_pred HHHHHHhcCCCEEEecCccCCCCHHH
Confidence 99999999999999999999999864
No 69
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-38 Score=252.08 Aligned_cols=154 Identities=19% Similarity=0.133 Sum_probs=132.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----HHhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----LFQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~~~~~~~ig~ 87 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ....++.++|
T Consensus 14 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 82 (241)
T cd03256 14 KKALKDVSLSINPGE----FVALIGPSGAGKS-------TLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGM 82 (241)
T ss_pred cEEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEE
Confidence 469999999999999 7889999999999 99999999999999999999988754 2345678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHh--------cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 88 CPQFNGINEHLTAQEMLECFSAL--------RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
+||++.+++.+|+.||+.+.... .+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus 83 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 162 (241)
T cd03256 83 IFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQ 162 (241)
T ss_pred EcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999764211 1111223345688899999999888999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 163 p~llllDEPt~~LD~~~~ 180 (241)
T cd03256 163 PKLILADEPVASLDPASS 180 (241)
T ss_pred CCEEEEeCccccCCHHHH
Confidence 999999999999999764
No 70
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-38 Score=248.82 Aligned_cols=153 Identities=23% Similarity=0.342 Sum_probs=133.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~ 91 (178)
.++++||||++++| + .+|+|+||+||| ||++.+.|+.+|++|++.++|.++... .++++.++|+||+
T Consensus 13 ~~~l~~vs~~i~~g-~----~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 80 (211)
T cd03264 13 KRALDGVSLTLGPG-M----YGLLGPNGAGKT-------TLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQE 80 (211)
T ss_pred EEEEcceeEEEcCC-c----EEEECCCCCCHH-------HHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCC
Confidence 46999999999997 4 459999999999 999999999999999999999877543 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+|+.||+.+.....+....+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 160 (211)
T cd03264 81 FGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160 (211)
T ss_pred CcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999999999998765544433334456788999999999888999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 161 LD~~~~ 166 (211)
T cd03264 161 LDPEER 166 (211)
T ss_pred CCHHHH
Confidence 999764
No 71
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=1.4e-38 Score=252.61 Aligned_cols=154 Identities=20% Similarity=0.166 Sum_probs=132.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~ 89 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... .+ .+++++|+|
T Consensus 13 ~~~l~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 81 (236)
T cd03219 13 LVALDDVSFSVRPGE----IHGLIGPNGAGKT-------TLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTF 81 (236)
T ss_pred EEEecCceEEecCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEe
Confidence 469999999999999 8889999999999 999999999999999999999877542 22 246799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCC----------CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIP----------GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
|++.+++.+|++||+.+........ ..+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus 82 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 161 (236)
T cd03219 82 QIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATD 161 (236)
T ss_pred cccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999999999998764332111 122345678899999999888999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++++|||||+|||+.++
T Consensus 162 p~llllDEPt~~LD~~~~ 179 (236)
T cd03219 162 PKLLLLDEPAAGLNPEET 179 (236)
T ss_pred CCEEEEcCCcccCCHHHH
Confidence 999999999999998764
No 72
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.4e-38 Score=251.61 Aligned_cols=153 Identities=21% Similarity=0.217 Sum_probs=132.9
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhh-ccceEE
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQY-LSGIGY 87 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~-~~~ig~ 87 (178)
++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... .+. +++++|
T Consensus 24 ~~l~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 92 (228)
T PRK10584 24 SILTGVELVVKRGE----TIALIGESGSGKS-------TLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGF 92 (228)
T ss_pred EEEeccEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEE
Confidence 58999999999999 7889999999999 999999999999999999999877542 122 257999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++.+++.+|+.||+.+..........+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||
T Consensus 93 ~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDE 172 (228)
T PRK10584 93 VFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADE 172 (228)
T ss_pred EEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999999999999999875433333333445678899999999988899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 173 Pt~~LD~~~~ 182 (228)
T PRK10584 173 PTGNLDRQTG 182 (228)
T ss_pred CCCCCCHHHH
Confidence 9999998754
No 73
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=260.62 Aligned_cols=153 Identities=17% Similarity=0.129 Sum_probs=132.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig 86 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|+++.. ..+.++++|
T Consensus 20 ~~~L~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 88 (290)
T PRK13634 20 RRALYDVNVSIPSGS----YVAIIGHTGSGKS-------TLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVG 88 (290)
T ss_pred ccceeeEEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEE
Confidence 469999999999999 8889999999999 99999999999999999999998742 345667899
Q ss_pred EecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 87 YCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
||||++ .++ ..|+.||+.+.....+.+..+..+++.++++.++|. +..++++.+|||||||||+|||||+.+|++|
T Consensus 89 ~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~ll 167 (290)
T PRK13634 89 IVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVL 167 (290)
T ss_pred EEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999986 344 579999998765544444444556788999999997 6789999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 168 llDEPt~~LD~~~~ 181 (290)
T PRK13634 168 VLDEPTAGLDPKGR 181 (290)
T ss_pred EEECCcccCCHHHH
Confidence 99999999999754
No 74
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.6e-38 Score=252.38 Aligned_cols=154 Identities=22% Similarity=0.252 Sum_probs=134.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+++||+|++|| +.+|+|+||+||| ||++++.|+.+|++|++.++|.++.. ..++++.++|+||
T Consensus 14 ~~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (242)
T cd03295 14 KKAVNNLNLEIAKGE----FLVLIGPSGSGKT-------TTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQ 82 (242)
T ss_pred ceEeeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEcc
Confidence 469999999999999 7889999999999 99999999999999999999987754 3345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc--cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE--YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
++.+++.+|++||+.++....+....+..+.+.++++.+++.+ ..++++.+|||||||||+|||||+.+|+++|||||
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 162 (242)
T cd03295 83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162 (242)
T ss_pred CccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999999999987654443332334557889999999985 78999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 163 t~~LD~~~~ 171 (242)
T cd03295 163 FGALDPITR 171 (242)
T ss_pred cccCCHHHH
Confidence 999999764
No 75
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-38 Score=258.56 Aligned_cols=154 Identities=14% Similarity=0.050 Sum_probs=133.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ..++++.++|+||
T Consensus 18 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 86 (274)
T PRK13647 18 TKALKGLSLSIPEGS----KTALLGPNGAGKS-------TLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQ 86 (274)
T ss_pred CeeeeeEEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEec
Confidence 469999999999999 8889999999999 99999999999999999999988754 3455678999999
Q ss_pred CCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 91 FNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 91 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
++. .++..|+.+|+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 87 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt 166 (274)
T PRK13647 87 DPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPM 166 (274)
T ss_pred ChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 973 4557899999987544334333344567889999999998899999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 167 ~~LD~~~~ 174 (274)
T PRK13647 167 AYLDPRGQ 174 (274)
T ss_pred cCCCHHHH
Confidence 99999764
No 76
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=2.5e-38 Score=250.02 Aligned_cols=153 Identities=18% Similarity=0.114 Sum_probs=131.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC-----Cccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS-----PFQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~-----~~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+. +|++|++.++|.++.. ...+++
T Consensus 13 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (227)
T cd03260 13 KHALKDISLDIPKGE----ITALIGPSGCGKS-------TLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR 81 (227)
T ss_pred ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh
Confidence 479999999999999 8889999999999 9999999999 9999999999988754 334567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCCccccCc--CCCCChHHHHHHHHHHHHhCCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLTEYRHRV--SGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~~~~~~~--~~~LSgGqkQRv~IAraL~~~P 160 (178)
+++|+||++.++ .+|++||+.+.....+.... +..+++.++++.+++.+..++. +.+|||||||||+|||||+.+|
T Consensus 82 ~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p 160 (227)
T cd03260 82 RVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEP 160 (227)
T ss_pred hEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCC
Confidence 899999999887 89999999876544332221 2346788899999998777766 5999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~~ 177 (178)
+++||||||+|||+.++
T Consensus 161 ~llllDEPt~~LD~~~~ 177 (227)
T cd03260 161 EVLLLDEPTSALDPIST 177 (227)
T ss_pred CEEEEeCCCccCCHHHH
Confidence 99999999999999764
No 77
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.3e-38 Score=247.76 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=133.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v 88 (178)
.++++++||++.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ...++++++|+
T Consensus 13 ~~~l~~~s~~i~~G~----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (213)
T cd03262 13 FHVLKGIDLTVKKGE----VVVIIGPSGSGKS-------TLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMV 81 (213)
T ss_pred eEeecCceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEE
Confidence 469999999999999 7889999999999 99999999999999999999987732 23456789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 89 PQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
||++.+++.+|+.||+.++.. ..+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||
T Consensus 82 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 161 (213)
T cd03262 82 FQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDE 161 (213)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999999999987542 2232222344568889999999988899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 162 P~~~LD~~~~ 171 (213)
T cd03262 162 PTSALDPELV 171 (213)
T ss_pred CccCCCHHHH
Confidence 9999998764
No 78
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-38 Score=258.66 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=135.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+++++|.++.. ..++++.++|+||+
T Consensus 21 ~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 89 (279)
T PRK13650 21 YTLNDVSFHVKQGE----WLSIIGHNGSGKS-------TTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQN 89 (279)
T ss_pred eeeeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcC
Confidence 59999999999999 8889999999999 99999999999999999999998753 34567789999999
Q ss_pred C-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 92 N-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 92 ~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
+ .+++..|+.||+.+.....+....+..+++.++++.++|.+..++.+.+|||||||||+|||||+.+|++|||||||+
T Consensus 90 ~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 90 PDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred hHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 7 467788999999876544444444455678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 170 ~LD~~~~ 176 (279)
T PRK13650 170 MLDPEGR 176 (279)
T ss_pred cCCHHHH
Confidence 9999754
No 79
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=2.4e-38 Score=268.85 Aligned_cols=156 Identities=13% Similarity=0.144 Sum_probs=136.5
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEe
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYC 88 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v 88 (178)
+..++|++|||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|+++.. ..++++++|||
T Consensus 14 ~~~~vL~~vs~~i~~Ge----iv~liGpNGaGKS-------TLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 14 GDTTVLDGVDLSVREGS----LVGLVGPNGAGKT-------TLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred CCEEEEEeeEEEECCCC----EEEEECCCCchHH-------HHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 34579999999999999 8889999999999 99999999999999999999998764 35667889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhc--CCC--CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 89 PQFNGINEHLTAQEMLECFSALR--GIP--GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~--~~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
+|++.+++++|++|++.+....+ ... ..+.++++.++++.+++.+..++++.+|||||||||+|||||+++|++||
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL 162 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL 162 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999998743211 111 23345678999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 163 LDEPtsgLD~~~~ 175 (402)
T PRK09536 163 LDEPTASLDINHQ 175 (402)
T ss_pred EECCcccCCHHHH
Confidence 9999999999754
No 80
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-38 Score=259.06 Aligned_cols=153 Identities=15% Similarity=0.098 Sum_probs=132.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig 86 (178)
.++|+||||+|.+|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|.++.. ..+++++||
T Consensus 20 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 88 (286)
T PRK13646 20 HQAIHDVNTEFEQGK----YYAIVGQTGSGKS-------TLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIG 88 (286)
T ss_pred cCceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheE
Confidence 369999999999999 8889999999999 99999999999999999999988743 245678899
Q ss_pred EecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 87 YCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
||||++ .+++ .|+.||+.+.....+.+..+..+++.++++.+|+. +..++.+.+|||||||||+|||||+.+|++|
T Consensus 89 ~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~il 167 (286)
T PRK13646 89 MVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDII 167 (286)
T ss_pred EEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 999986 3444 59999998765444444444566788999999997 6788999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 168 llDEPt~~LD~~~~ 181 (286)
T PRK13646 168 VLDEPTAGLDPQSK 181 (286)
T ss_pred EEECCcccCCHHHH
Confidence 99999999999764
No 81
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-38 Score=260.38 Aligned_cols=153 Identities=16% Similarity=0.157 Sum_probs=132.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc-----------------
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM----------------- 76 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~----------------- 76 (178)
++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++.
T Consensus 21 ~~l~~vsl~i~~Ge----~v~iiG~nGsGKS-------TLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 89 (305)
T PRK13651 21 KALDNVSVEINQGE----FIAIIGQTGSGKT-------TFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVI 89 (305)
T ss_pred cceeeeEEEEeCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCcEEEEeceeccccccccccccccccccc
Confidence 69999999999999 8889999999999 9999999999999999999876541
Q ss_pred ---------cHHhhccceEEecCCC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChH
Q psy860 77 ---------HLFQYLSGIGYCPQFN-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGG 145 (178)
Q Consensus 77 ---------~~~~~~~~ig~v~Q~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG 145 (178)
...+++++||||||++ ..++..||+||+.+.....+.+..+..+++.++++.+||. +..++++.+||||
T Consensus 90 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgG 169 (305)
T PRK13651 90 QKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGG 169 (305)
T ss_pred ccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHH
Confidence 2345677899999986 2344679999998766555555445567789999999997 7899999999999
Q ss_pred HHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 146 NKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 146 qkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|||||+|||||+.+|++|||||||+|||+.++
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~ 201 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGV 201 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 99999999999999999999999999999764
No 82
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.3e-38 Score=262.58 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=134.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++++||||+|..|| +.+|+|+||+||| ||++.++|+.+|++|+|.++|.++... ..+++.|+|
T Consensus 34 ~~~l~~vsl~i~~Ge----~~~lvG~sGsGKS-------TLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~ 102 (331)
T PRK15079 34 LKAVDGVTLRLYEGE----TLGVVGESGCGKS-------TFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQM 102 (331)
T ss_pred eEEEeeEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEE
Confidence 579999999999999 8889999999999 999999999999999999999987542 345678999
Q ss_pred ecCCC--CCCCCCCHHHHHHHHHHhc--CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 88 CPQFN--GINEHLTAQEMLECFSALR--GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 88 v~Q~~--~l~~~ltv~e~l~~~~~~~--~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
|||++ .+++.+|+.+++.+..... ..+..+.++++.++++.+++. +..++++++|||||||||+|||||+.+|++
T Consensus 103 v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l 182 (331)
T PRK15079 103 IFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL 182 (331)
T ss_pred EecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99997 5888999999998754432 233344556788999999995 578999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
||+||||+|||+.++
T Consensus 183 lilDEPts~LD~~~~ 197 (331)
T PRK15079 183 IICDEPVSALDVSIQ 197 (331)
T ss_pred EEEeCCCccCCHHHH
Confidence 999999999998764
No 83
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.5e-38 Score=250.78 Aligned_cols=154 Identities=20% Similarity=0.222 Sum_probs=133.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~ 91 (178)
.++|++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ...++.++|+||+
T Consensus 14 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~ 82 (236)
T TIGR03864 14 RRALDDVSFTVRPGE----FVALLGPNGAGKS-------TLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQ 82 (236)
T ss_pred EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCC
Confidence 469999999999999 8889999999999 999999999999999999999877542 2334579999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+|+.+|+.+.....+....+..+.+.++++.+++.+..++.+.+|||||||||+|||||+.+|+++||||||+|
T Consensus 83 ~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~ 162 (236)
T TIGR03864 83 PTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVG 162 (236)
T ss_pred CCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 98888999999998765443332223445688899999999888999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 163 LD~~~~ 168 (236)
T TIGR03864 163 LDPASR 168 (236)
T ss_pred CCHHHH
Confidence 999764
No 84
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.6e-38 Score=247.78 Aligned_cols=151 Identities=20% Similarity=0.252 Sum_probs=128.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.+++++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++. ..+++++|+||++
T Consensus 12 ~~~l~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~---~~~~~i~~v~q~~ 77 (213)
T cd03235 12 HPVLEDVSFEVKPGE----FLAIVGPNGAGKS-------TLLKAILGLLKPTSGSIRVFGKPLE---KERKRIGYVPQRR 77 (213)
T ss_pred EEeeecceeEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCCEEEECCccHH---HHHhheEEecccc
Confidence 469999999999999 7889999999999 9999999999999999999998764 3566899999998
Q ss_pred CCC--CCCCHHHHHHHHHHhcC----CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 93 GIN--EHLTAQEMLECFSALRG----IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 93 ~l~--~~ltv~e~l~~~~~~~~----~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
.++ +.+|+.||+.+...... ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus 78 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 157 (213)
T cd03235 78 SIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLD 157 (213)
T ss_pred ccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 763 34899999987432211 111223456888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 158 EPt~~LD~~~~ 168 (213)
T cd03235 158 EPFAGVDPKTQ 168 (213)
T ss_pred CCcccCCHHHH
Confidence 99999999764
No 85
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=4.3e-38 Score=250.87 Aligned_cols=154 Identities=21% Similarity=0.173 Sum_probs=132.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..+++.++|
T Consensus 15 ~~il~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 83 (243)
T TIGR02315 15 KQALKNINLNINPGE----FVAIIGPSGAGKS-------TLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGM 83 (243)
T ss_pred cceeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEE
Confidence 469999999999999 8889999999999 999999999999999999999876532 235678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHh--------cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 88 CPQFNGINEHLTAQEMLECFSAL--------RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
+||++.+++.+|+.||+.+.... ......+..+++.++++.+++.+..++++.+|||||||||+|||||+.+
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 163 (243)
T TIGR02315 84 IFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQ 163 (243)
T ss_pred EcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999753211 1111223345788899999999888999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|+|||||+|||+.++
T Consensus 164 p~llllDEPt~~LD~~~~ 181 (243)
T TIGR02315 164 PDLILADEPIASLDPKTS 181 (243)
T ss_pred CCEEEEeCCcccCCHHHH
Confidence 999999999999999764
No 86
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=6e-38 Score=251.14 Aligned_cols=154 Identities=19% Similarity=0.144 Sum_probs=133.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----------HHhhc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----------LFQYL 82 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----------~~~~~ 82 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ...++
T Consensus 16 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK11264 16 QTVLHGIDLEVKPGE----VVAIIGPSGSGKT-------TLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLR 84 (250)
T ss_pred eeeeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhh
Confidence 469999999999999 7889999999999 99999999999999999999987642 23456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+.++|+||++.+++..|+.||+.+... .......+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 85 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~ 164 (250)
T PRK11264 85 QHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPE 164 (250)
T ss_pred hhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCC
Confidence 789999999999999999999987432 2222222334568889999999988899999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|||||||+|||+.++
T Consensus 165 lllLDEPt~~LD~~~~ 180 (250)
T PRK11264 165 VILFDEPTSALDPELV 180 (250)
T ss_pred EEEEeCCCccCCHHHH
Confidence 9999999999999764
No 87
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-38 Score=257.60 Aligned_cols=153 Identities=17% Similarity=0.150 Sum_probs=133.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig 86 (178)
.++|+||||+|.+|| +.+|+|+||+||| ||++++.|+.+|++|+++++|.++.. ..+.++.+|
T Consensus 19 ~~~l~~vsl~i~~Ge----~v~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig 87 (288)
T PRK13643 19 SRALFDIDLEVKKGS----YTALIGHTGSGKS-------TLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVG 87 (288)
T ss_pred ccceeeeEEEEcCCC----EEEEECCCCChHH-------HHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEE
Confidence 369999999999999 8889999999999 99999999999999999999998642 345677899
Q ss_pred EecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 87 YCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
||||++ .++ ..|+.|++.+.....+.+..+..+++.++++.+++. +..++.+.+|||||||||+|||||+.+|++|
T Consensus 88 ~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~il 166 (288)
T PRK13643 88 VVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVL 166 (288)
T ss_pred EEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEE
Confidence 999987 454 469999998866554444444566788999999996 5789999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 167 lLDEPt~gLD~~~~ 180 (288)
T PRK13643 167 VLDEPTAGLDPKAR 180 (288)
T ss_pred EEECCccCCCHHHH
Confidence 99999999999764
No 88
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-38 Score=252.63 Aligned_cols=151 Identities=21% Similarity=0.235 Sum_probs=132.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++++||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. .+..++|+||++
T Consensus 14 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~~v~q~~ 79 (255)
T PRK11248 14 KPALEDINLTLESGE----LLVVLGPSGCGKT-------TLLNLIAGFVPYQHGSITLDGKPVEG---PGAERGVVFQNE 79 (255)
T ss_pred eeeEeeeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCC---CCCcEEEEeCCC
Confidence 469999999999999 7889999999999 99999999999999999999987653 234689999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 99999999999987544433333334457889999999998889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 160 D~~~~ 164 (255)
T PRK11248 160 DAFTR 164 (255)
T ss_pred CHHHH
Confidence 99764
No 89
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8e-38 Score=249.16 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=133.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v 88 (178)
.++++|+||++++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++.. ...++++++|+
T Consensus 14 ~~il~~~s~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 82 (240)
T PRK09493 14 TQVLHNIDLNIDQGE----VVVIIGPSGSGKS-------TLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMV 82 (240)
T ss_pred eEEeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEE
Confidence 469999999999999 7889999999999 99999999999999999999988753 23456789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 89 PQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
||++.+++.+|+.+|+.+... ..+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||
T Consensus 83 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 162 (240)
T PRK09493 83 FQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDE 162 (240)
T ss_pred ecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999999999999977532 2222223344568889999999988899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 163 P~~~LD~~~~ 172 (240)
T PRK09493 163 PTSALDPELR 172 (240)
T ss_pred CcccCCHHHH
Confidence 9999999764
No 90
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1e-37 Score=249.57 Aligned_cols=153 Identities=19% Similarity=0.178 Sum_probs=132.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-----ccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-----AAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-----~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++++||||+|+.|| +.+|+|+||+||| ||++.+.|+.+|+ +|++.++|.++.. ....++
T Consensus 14 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 82 (247)
T TIGR00972 14 KEALKNINLDIPKNQ----VTALIGPSGCGKS-------TLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRR 82 (247)
T ss_pred eeeecceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHh
Confidence 469999999999999 8889999999999 9999999999988 9999999988753 334567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|+.||+.+.....+. ...+..+++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 83 ~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 161 (247)
T TIGR00972 83 RVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAV 161 (247)
T ss_pred heEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 8999999998888 9999999876544331 2223345788899999997 77889999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 162 ~p~llllDEPt~~LD~~~~ 180 (247)
T TIGR00972 162 EPEVLLLDEPTSALDPIAT 180 (247)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999999764
No 91
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=9.2e-38 Score=253.09 Aligned_cols=154 Identities=15% Similarity=0.109 Sum_probs=132.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|++|||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... ...++.++|
T Consensus 20 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 88 (269)
T PRK11831 20 RCIFDNISLTVPRGK----ITAIMGPSGIGKT-------TLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSM 88 (269)
T ss_pred EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEE
Confidence 469999999999999 8889999999999 999999999999999999999877532 234667999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 88 CPQFNGINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
+||++.+++.+|+.||+.+..... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus 89 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 168 (269)
T PRK11831 89 LFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFD 168 (269)
T ss_pred EecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 999999999999999998753322 1222223456778899999998899999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 169 EPt~~LD~~~~ 179 (269)
T PRK11831 169 EPFVGQDPITM 179 (269)
T ss_pred CCCccCCHHHH
Confidence 99999999764
No 92
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-37 Score=242.76 Aligned_cols=152 Identities=20% Similarity=0.202 Sum_probs=134.1
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQ 90 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q 90 (178)
..++|++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... ...++.++|++|
T Consensus 13 ~~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 13 ERILFSGLSFTLNAGE----LVQIEGPNGAGKT-------SLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred CEEEEecceEEECCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 3569999999999999 8889999999999 999999999999999999999877542 345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++.+|+.||+.++....+. +..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++|||||+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 158 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFT 158 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99899999999999876544321 335678899999999888899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 159 ~LD~~~~ 165 (204)
T PRK13538 159 AIDKQGV 165 (204)
T ss_pred cCCHHHH
Confidence 9998764
No 93
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-38 Score=255.28 Aligned_cols=154 Identities=18% Similarity=0.087 Sum_probs=134.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~ 89 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|+++|.++.. ...+++.++|+|
T Consensus 15 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 83 (274)
T PRK13644 15 TPALENINLVIKKGE----YIGIIGKNGSGKS-------TLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVF 83 (274)
T ss_pred CceeeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEE
Confidence 469999999999999 8889999999999 99999999999999999999998754 245567899999
Q ss_pred CCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 90 QFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 90 Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
|++. .++..|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||||
T Consensus 84 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 84 QNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred EChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9975 466789999998765444443334456788899999999989999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 164 t~gLD~~~~ 172 (274)
T PRK13644 164 TSMLDPDSG 172 (274)
T ss_pred cccCCHHHH
Confidence 999999764
No 94
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-38 Score=255.46 Aligned_cols=154 Identities=16% Similarity=0.102 Sum_probs=132.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig 86 (178)
.++|+||||+|.+|| +.+|+|+||+||| ||++++.|+.+|++|++.++|+++.. ....+++++
T Consensus 20 ~~~l~~vsl~i~~Ge----~~~iiG~NGaGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig 88 (287)
T PRK13641 20 KKGLDNISFELEEGS----FVALVGHTGSGKS-------TLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVS 88 (287)
T ss_pred ccceeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceE
Confidence 369999999999999 8889999999999 99999999999999999999988743 234567899
Q ss_pred EecCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 87 YCPQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 87 ~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
|+||++. .++.+|+.||+.+..........+..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 89 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLl 168 (287)
T PRK13641 89 LVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILC 168 (287)
T ss_pred EEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999973 233689999998754433333334456788999999997 68899999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 169 LDEPt~gLD~~~~ 181 (287)
T PRK13641 169 LDEPAAGLDPEGR 181 (287)
T ss_pred EECCCCCCCHHHH
Confidence 9999999999764
No 95
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=8.7e-38 Score=245.92 Aligned_cols=152 Identities=24% Similarity=0.257 Sum_probs=131.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~ 89 (178)
.+++++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... .+ .++.++|+|
T Consensus 13 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (222)
T cd03224 13 SQILFGVSLTVPEGE----IVALLGRNGAGKT-------TLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVP 81 (222)
T ss_pred eeEeeeeeEEEcCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEec
Confidence 479999999999999 7889999999999 999999999999999999999876542 22 356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
|++.+++.+|++||+.++..... ..+..+++.++++.+ ++.+..++++.+|||||||||+|||||+.+|++++||||
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 82 EGRRIFPELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred cccccCCCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 99999999999999987654332 223345677888888 577888999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 160 t~~LD~~~~ 168 (222)
T cd03224 160 SEGLAPKIV 168 (222)
T ss_pred cccCCHHHH
Confidence 999999764
No 96
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-38 Score=259.02 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=131.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---------------
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--------------- 77 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--------------- 77 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|+++|.++..
T Consensus 39 ~~~L~~vsl~i~~Ge----~~~I~G~nGsGKS-------TLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~ 107 (320)
T PRK13631 39 LVALNNISYTFEKNK----IYFIIGNSGSGKS-------TLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKK 107 (320)
T ss_pred ccceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccc
Confidence 469999999999999 8889999999999 99999999999999999999977642
Q ss_pred ---HHhhccceEEecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHH
Q psy860 78 ---LFQYLSGIGYCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLS 151 (178)
Q Consensus 78 ---~~~~~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~ 151 (178)
..++++.++||||++ .+++ .|+.||+.+.....+.+..+..+++.++++.+++. +..++.+.+|||||||||+
T Consensus 108 ~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRva 186 (320)
T PRK13631 108 IKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVA 186 (320)
T ss_pred cchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHH
Confidence 245678899999997 3554 59999998765433333334456788999999997 6889999999999999999
Q ss_pred HHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 152 TAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 152 IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|||||+.+|++|||||||+|||+.++
T Consensus 187 iAraL~~~p~iLLLDEPtsgLD~~~~ 212 (320)
T PRK13631 187 IAGILAIQPEILIFDEPTAGLDPKGE 212 (320)
T ss_pred HHHHHHcCCCEEEEECCccCCCHHHH
Confidence 99999999999999999999999764
No 97
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.5e-37 Score=245.31 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=129.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEEe
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGYC 88 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~v 88 (178)
++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..+++.++|+
T Consensus 19 ~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~ 87 (228)
T cd03257 19 KALDDVSFSIKKGE----TLGLVGESGSGKS-------TLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87 (228)
T ss_pred eeecCceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEE
Confidence 69999999999999 8889999999999 999999999999999999999887542 3456789999
Q ss_pred cCCC--CCCCCCCHHHHHHHHHHhcCCCCC-ChhHH-HHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 89 PQFN--GINEHLTAQEMLECFSALRGIPGV-KSGPI-IDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 89 ~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~-~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
||++ .+++.+|+++|+.+.......... +..+. +.++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus 88 ~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 167 (228)
T cd03257 88 FQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLL 167 (228)
T ss_pred ecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEE
Confidence 9998 467789999999875433322111 11122 35788999995 6789999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 168 lLDEPt~~LD~~~~ 181 (228)
T cd03257 168 IADEPTSALDVSVQ 181 (228)
T ss_pred EecCCCCCCCHHHH
Confidence 99999999999764
No 98
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-38 Score=254.89 Aligned_cols=154 Identities=14% Similarity=0.083 Sum_probs=133.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc----cHHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM----HLFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~----~~~~~~~~ig~v 88 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++. ...++++.++|+
T Consensus 19 ~~~l~~vs~~i~~Ge----~~~i~G~nGaGKS-------TLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v 87 (283)
T PRK13636 19 THALKGININIKKGE----VTAILGGNGAGKS-------TLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMV 87 (283)
T ss_pred CeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEE
Confidence 469999999999999 8889999999999 9999999999999999999998873 134567789999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
||++. .++..|++||+.+.....+.+..+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++|||||
T Consensus 88 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDE 167 (283)
T PRK13636 88 FQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDE 167 (283)
T ss_pred ecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 99974 34568999999875544444434445678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 168 Pt~gLD~~~~ 177 (283)
T PRK13636 168 PTAGLDPMGV 177 (283)
T ss_pred CccCCCHHHH
Confidence 9999999764
No 99
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.2e-37 Score=245.31 Aligned_cols=154 Identities=19% Similarity=0.177 Sum_probs=134.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|++|||++..|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... ...+++++|
T Consensus 18 ~~il~~vs~~i~~G~----~~~I~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~ 86 (220)
T TIGR02982 18 KQVLFDINLEINPGE----IVILTGPSGSGKT-------TLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGY 86 (220)
T ss_pred eeEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEE
Confidence 579999999999999 8889999999999 999999999999999999999877532 235678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
+||++.+++.+|+.||+.++..... ....+..+++.++++.+++.+..++.+.+||+|||||++|||||+.+|++++||
T Consensus 87 ~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlD 166 (220)
T TIGR02982 87 IFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLAD 166 (220)
T ss_pred EcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999999987654332 222334457889999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 167 EP~~~LD~~~~ 177 (220)
T TIGR02982 167 EPTAALDSKSG 177 (220)
T ss_pred CCCCcCCHHHH
Confidence 99999999764
No 100
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.5e-37 Score=243.73 Aligned_cols=152 Identities=16% Similarity=0.135 Sum_probs=131.7
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
+++++||++.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++......++.++|+||++.+
T Consensus 13 ~~~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~ 81 (213)
T TIGR01277 13 LPMEFDLNVADGE----IVAIMGPSGAGKS-------TLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNL 81 (213)
T ss_pred cceeeEEEEeCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCcc
Confidence 5789999999999 7889999999999 9999999999999999999998876544456789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
++.+|+.||+.+..........+.++++.++++.+++.+..++.+.+||+|||||++|||||+.+|++++|||||+|||+
T Consensus 82 ~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 161 (213)
T TIGR01277 82 FAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDP 161 (213)
T ss_pred CCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 99999999997643221111223355688899999999888999999999999999999999999999999999999998
Q ss_pred CCC
Q psy860 175 YNT 177 (178)
Q Consensus 175 ~~~ 177 (178)
.++
T Consensus 162 ~~~ 164 (213)
T TIGR01277 162 LLR 164 (213)
T ss_pred HHH
Confidence 754
No 101
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-37 Score=243.76 Aligned_cols=150 Identities=17% Similarity=0.169 Sum_probs=129.3
Q ss_pred cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCC
Q psy860 17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE 96 (178)
Q Consensus 17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~ 96 (178)
.++||+|.+|| +.+|+|+||+||| ||++++.|+.+|++|++.++|.++......++.++|+||++.+++
T Consensus 15 ~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 83 (211)
T cd03298 15 MHFDLTFAQGE----ITAIVGPSGSGKS-------TLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83 (211)
T ss_pred cceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCC
Confidence 39999999999 7889999999999 999999999999999999999887654334568999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
.+|++||+.+..........+..+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|||+.+
T Consensus 84 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~ 163 (211)
T cd03298 84 HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163 (211)
T ss_pred CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 99999999764321111112335568889999999988899999999999999999999999999999999999999976
Q ss_pred C
Q psy860 177 T 177 (178)
Q Consensus 177 ~ 177 (178)
+
T Consensus 164 ~ 164 (211)
T cd03298 164 R 164 (211)
T ss_pred H
Confidence 4
No 102
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-38 Score=232.66 Aligned_cols=156 Identities=18% Similarity=0.127 Sum_probs=140.1
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--------cHHhh
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--------HLFQY 81 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--------~~~~~ 81 (178)
.|...+|.||+|+.+.|| -..++||+|+||| +|++.++-+.-|.+|+..+-+.... ...++
T Consensus 12 yg~~q~lfdi~l~~~~ge----tlvllgpsgagks-------sllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 12 YGAHQALFDITLDCPEGE----TLVLLGPSGAGKS-------SLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred cccchheeeeeecCCCCC----EEEEECCCCCchH-------HHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 366789999999999999 6669999999999 9999999999999999877765431 13568
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHH-HHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLEC-FSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
|+.+|+|||..+++|++||.||+.. +.+..++++++.+.++.++|+++.+.+++|+.|-.|||||||||+|||||+++|
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkp 160 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEP 160 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCC
Confidence 8899999999999999999999876 456678888888899999999999999999999999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~ 176 (178)
++|++||||++|||.-
T Consensus 161 qvllfdeptaaldpei 176 (242)
T COG4161 161 QVLLFDEPTAALDPEI 176 (242)
T ss_pred cEEeecCcccccCHHH
Confidence 9999999999999963
No 103
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-37 Score=247.70 Aligned_cols=154 Identities=18% Similarity=0.134 Sum_probs=132.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--------cHHhhccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--------HLFQYLSG 84 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--------~~~~~~~~ 84 (178)
.++|+++||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++. .....+++
T Consensus 15 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 83 (242)
T PRK11124 15 HQALFDITLDCPQGE----TLVLLGPSGAGKS-------SLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRN 83 (242)
T ss_pred eeeEeeeeeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhh
Confidence 479999999999999 8889999999999 9999999999999999999998762 12345678
Q ss_pred eEEecCCCCCCCCCCHHHHHHHH-HHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 85 IGYCPQFNGINEHLTAQEMLECF-SALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 85 ig~v~Q~~~l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
++|+||++.+++.+|+.||+.++ ....+....+..+++.++++.+|+.+..++.+.+|||||||||+|||||+.+|+++
T Consensus 84 i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 163 (242)
T PRK11124 84 VGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVL 163 (242)
T ss_pred eEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999999999999999753 22333322233456888999999998889999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
+|||||+|||+.++
T Consensus 164 ilDEPt~~LD~~~~ 177 (242)
T PRK11124 164 LFDEPTAALDPEIT 177 (242)
T ss_pred EEcCCCCcCCHHHH
Confidence 99999999999764
No 104
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-37 Score=253.93 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=135.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..++++.++|+||
T Consensus 20 ~~~l~~vsl~i~~Ge----~~~i~G~nGaGKS-------TLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 88 (279)
T PRK13635 20 TYALKDVSFSVYEGE----WVAIVGHNGSGKS-------TLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQ 88 (279)
T ss_pred ccceeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEe
Confidence 359999999999999 7889999999999 99999999999999999999998754 2345678999999
Q ss_pred CCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 91 FNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 91 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
++. +++..|+.||+.+.....+....+..+++.++++.++|.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 89 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 89 NPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred CHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 974 6778899999987654444433444567889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 169 ~gLD~~~~ 176 (279)
T PRK13635 169 SMLDPRGR 176 (279)
T ss_pred ccCCHHHH
Confidence 99999764
No 105
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.7e-37 Score=239.68 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=132.4
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQ 90 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q 90 (178)
..++|++|||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ...++.++|++|
T Consensus 12 ~~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGE----ALQVTGPNGIGKT-------TLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 3579999999999999 7889999999999 999999999999999999999876543 234578999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++.+|+.+|+.++..... .+ .+.+.++++.+++.+..++++.+|||||||||+||||++.+|++++|||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~---~~-~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHG---GA-QRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcC---Cc-HHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 9888888999999987654332 12 3467889999999988899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 157 ~LD~~~~ 163 (198)
T TIGR01189 157 ALDKAGV 163 (198)
T ss_pred CCCHHHH
Confidence 9998754
No 106
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.9e-38 Score=239.87 Aligned_cols=151 Identities=19% Similarity=0.175 Sum_probs=141.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
..+|+|||++|..|| +..++||+||||+ ||+..+.|+.+|+.|.|.++++.+..+.. .-|.|||++
T Consensus 18 ~~~le~vsL~ia~ge----~vv~lGpSGcGKT-------TLLnl~AGf~~P~~G~i~l~~r~i~gPga---ergvVFQ~~ 83 (259)
T COG4525 18 RSALEDVSLTIASGE----LVVVLGPSGCGKT-------TLLNLIAGFVTPSRGSIQLNGRRIEGPGA---ERGVVFQNE 83 (259)
T ss_pred hhhhhccceeecCCC----EEEEEcCCCccHH-------HHHHHHhcCcCcccceEEECCEeccCCCc---cceeEeccC
Confidence 469999999999999 9999999999999 99999999999999999999999877633 358999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.++|.+|+.+|+.|.....++++.+.++++.+.+..+||.+..++++-+|||||||||.|||||+-+|++|+||||+++|
T Consensus 84 ~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAl 163 (259)
T COG4525 84 ALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGAL 163 (259)
T ss_pred ccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhH
Confidence 99999999999999999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|.-+|
T Consensus 164 Da~tR 168 (259)
T COG4525 164 DALTR 168 (259)
T ss_pred HHHHH
Confidence 97654
No 107
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.9e-37 Score=246.86 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=134.7
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEE
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGY 87 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~ 87 (178)
..|..++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ...+++.++|
T Consensus 30 ~~~~~~il~~vs~~i~~Ge----~~~i~G~NGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 98 (236)
T cd03267 30 KYREVEALKGISFTIEKGE----IVGFIGPNGAGKT-------TTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGV 98 (236)
T ss_pred ccCCeeeeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCEEccccchhhcccEEE
Confidence 3455689999999999999 7889999999999 99999999999999999999986543 2345678999
Q ss_pred ec-CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 88 CP-QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 88 v~-Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
+| |.+.+++.+|+.|++.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++||
T Consensus 99 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 178 (236)
T cd03267 99 VFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLD 178 (236)
T ss_pred EcCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 98 55678889999999987654444333334456788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 179 EPt~~LD~~~~ 189 (236)
T cd03267 179 EPTIGLDVVAQ 189 (236)
T ss_pred CCCCCCCHHHH
Confidence 99999999764
No 108
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-37 Score=247.31 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=133.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~ 89 (178)
.++|+|+||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ...+++++|+|
T Consensus 16 ~~~l~~~sl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 84 (241)
T PRK10895 16 RRVVEDVSLTVNSGE----IVGLLGPNGAGKT-------TTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLP 84 (241)
T ss_pred EEEEeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEec
Confidence 479999999999999 8889999999999 999999999999999999999887542 22456899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 90 QFNGINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
|++.+++.+|+.||+.++.... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|+||||
T Consensus 85 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 164 (241)
T PRK10895 85 QEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEP 164 (241)
T ss_pred cCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999999999998754332 122233455788899999998888999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 165 t~~LD~~~~ 173 (241)
T PRK10895 165 FAGVDPISV 173 (241)
T ss_pred cccCCHHHH
Confidence 999998764
No 109
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=251.48 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=133.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ...+++.++|+||
T Consensus 22 ~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q 90 (271)
T PRK13632 22 NNALKNVSFEINEGE----YVAILGHNGSGKS-------TISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQ 90 (271)
T ss_pred ccceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEe
Confidence 469999999999999 7889999999999 99999999999999999999988754 3456778999999
Q ss_pred CCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 91 FNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 91 ~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
++. .++.+|+.||+.+.....+....+..+++.++++.+++.+..++.+.+||||||||++|||||+.+|++|+|||||
T Consensus 91 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~ 170 (271)
T PRK13632 91 NPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDEST 170 (271)
T ss_pred CHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 974 6778999999987544333333334456888999999998899999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 171 ~gLD~~~~ 178 (271)
T PRK13632 171 SMLDPKGK 178 (271)
T ss_pred ccCCHHHH
Confidence 99999754
No 110
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-37 Score=256.97 Aligned_cols=154 Identities=16% Similarity=0.145 Sum_probs=133.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
..+|+||||+|..|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... ..+++.|+|
T Consensus 28 ~~~l~~vsl~i~~Ge----~~~IvG~sGsGKS-------TLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~ 96 (327)
T PRK11308 28 VKALDGVSFTLERGK----TLAVVGESGCGKS-------TLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96 (327)
T ss_pred eeEEeeeEEEECCCC----EEEEECCCCCcHH-------HHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEE
Confidence 579999999999999 7889999999999 999999999999999999999887542 345678999
Q ss_pred ecCCC--CCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 88 CPQFN--GINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 88 v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
|||++ .+++.+|+.+++....... .....+.++++.++++.++|. ...++++++|||||||||+|||||+.+|++|
T Consensus 97 v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lL 176 (327)
T PRK11308 97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVV 176 (327)
T ss_pred EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99997 5888999999987654332 333334456789999999996 5779999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
|+||||++||+.++
T Consensus 177 ilDEPts~LD~~~~ 190 (327)
T PRK11308 177 VADEPVSALDVSVQ 190 (327)
T ss_pred EEECCCccCCHHHH
Confidence 99999999998754
No 111
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-37 Score=252.56 Aligned_cols=154 Identities=16% Similarity=0.099 Sum_probs=133.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~ 89 (178)
.++|++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ..+.++.++|+|
T Consensus 23 ~~vl~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~ 91 (280)
T PRK13633 23 KLALDDVNLEVKKGE----FLVILGRNGSGKS-------TIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVF 91 (280)
T ss_pred cceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEe
Confidence 469999999999999 8889999999999 99999999999999999999988754 245677899999
Q ss_pred CCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 90 QFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 90 Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
|++. .+...|+.+++.+.....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||||
T Consensus 92 q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 171 (280)
T PRK13633 92 QNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEP 171 (280)
T ss_pred cChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9974 233568999998765444444344456788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 172 t~gLD~~~~ 180 (280)
T PRK13633 172 TAMLDPSGR 180 (280)
T ss_pred cccCCHHHH
Confidence 999999764
No 112
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.9e-37 Score=246.09 Aligned_cols=154 Identities=20% Similarity=0.163 Sum_probs=132.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~ 89 (178)
.++|++|||+|.+|| +.+|+|+||+||| ||++++.|+.+|++|++.++|.++... .+ .+++++|+|
T Consensus 15 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 83 (242)
T TIGR03411 15 FKALNDLSLYVDPGE----LRVIIGPNGAGKT-------TMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKF 83 (242)
T ss_pred eEEeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEec
Confidence 479999999999999 7779999999999 999999999999999999999876542 22 345799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcC--------CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRG--------IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~--------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
|++.+++.+|+.||+.++..... ....+..+++.++++.+++.+..++.+.+|||||||||+|||||+.+|+
T Consensus 84 q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~ 163 (242)
T TIGR03411 84 QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPK 163 (242)
T ss_pred cccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999987543210 1112234568889999999988899999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|+|||||+|||+.++
T Consensus 164 ~lllDEPt~~LD~~~~ 179 (242)
T TIGR03411 164 LLLLDEPVAGMTDEET 179 (242)
T ss_pred EEEecCCccCCCHHHH
Confidence 9999999999999764
No 113
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-37 Score=251.16 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=132.4
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
.+|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..++++.++|+||+
T Consensus 18 ~~l~~vsl~i~~Ge----~~~i~G~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 86 (277)
T PRK13652 18 EALNNINFIAPRNS----RIAVIGPNGAGKS-------TLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQN 86 (277)
T ss_pred ceeeEeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecC
Confidence 59999999999999 7889999999999 99999999999999999999987753 34566789999999
Q ss_pred CC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 92 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 92 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
+. .++..|+.||+.+.....+....+..+++.++++.+++.+..++.+.+||||||||++|||||+.+|++|||||||+
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 87 PDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred cccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 74 34468999999875443333333344568899999999988999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 167 gLD~~~~ 173 (277)
T PRK13652 167 GLDPQGV 173 (277)
T ss_pred cCCHHHH
Confidence 9999764
No 114
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-37 Score=250.97 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=130.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig 86 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ...+++.|+
T Consensus 20 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~ 88 (280)
T PRK13649 20 GRALFDVNLTIEDGS----YTAFIGHTGSGKS-------TIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVG 88 (280)
T ss_pred cceeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheE
Confidence 369999999999999 7889999999999 99999999999999999999987643 235667899
Q ss_pred EecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 87 YCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
|+||++ .++ ..|++||+.+.....+....+..+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus 89 ~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 167 (280)
T PRK13649 89 LVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKIL 167 (280)
T ss_pred EEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999997 344 469999998765443333333445678899999997 5679999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 168 lLDEPt~~LD~~~~ 181 (280)
T PRK13649 168 VLDEPTAGLDPKGR 181 (280)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999999764
No 115
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.6e-37 Score=241.53 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=129.7
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhc
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYL 82 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~ 82 (178)
.+|...+ ||||+|.+ | +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ....+
T Consensus 9 ~~~~~~~--~vsl~i~~-e----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 74 (214)
T cd03297 9 RLPDFTL--KIDFDLNE-E----VTGIFGASGAGKS-------TLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ 74 (214)
T ss_pred ecCCeee--CceEEEcc-e----eEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEecccccchhhhhhHh
Confidence 3344344 99999999 9 7779999999999 99999999999999999999987642 22356
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
+.++|+||++.+++.+|+.+|+.+..... .....++++.++++.+++.+..++++.+|||||||||+|||||+.+|++
T Consensus 75 ~~i~~~~q~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 152 (214)
T cd03297 75 RKIGLVFQQYALFPHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL 152 (214)
T ss_pred hcEEEEecCCccCCCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 78999999999999999999998754321 1122345688899999999888999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
++|||||+|||+.++
T Consensus 153 lllDEPt~~LD~~~~ 167 (214)
T cd03297 153 LLLDEPFSALDRALR 167 (214)
T ss_pred EEEcCCcccCCHHHH
Confidence 999999999998764
No 116
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-37 Score=247.23 Aligned_cols=154 Identities=16% Similarity=0.157 Sum_probs=132.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|++|+ +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ...+++.++|+||
T Consensus 15 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (258)
T PRK13548 15 RTLLDDVSLTLRPGE----VVAILGPNGAGKS-------TLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQ 83 (258)
T ss_pred eeeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEcc
Confidence 469999999999999 7889999999999 99999999999999999999987653 2345568999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh------CCCCeEE
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI------GDRDDGF 164 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~------~~P~~ll 164 (178)
++.+++.+|++||+.+..........+..+++.++++.+++.+..++.+.+|||||||||+|||||+ .+|++++
T Consensus 84 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 84 HSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 9988888999999987543222222233456888999999998889999999999999999999999 5999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 164 LDEPt~~LD~~~~ 176 (258)
T PRK13548 164 LDEPTSALDLAHQ 176 (258)
T ss_pred EeCCcccCCHHHH
Confidence 9999999999764
No 117
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=4.6e-37 Score=246.52 Aligned_cols=154 Identities=19% Similarity=0.198 Sum_probs=133.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--------------
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-------------- 78 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-------------- 78 (178)
.++++||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++...
T Consensus 13 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~ 81 (252)
T TIGR03005 13 LTVLDGLNFSVAAGE----KVALIGPSGSGKS-------TILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKH 81 (252)
T ss_pred eeEEeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccccccccccccchhH
Confidence 479999999999999 7889999999999 999999999999999999999876421
Q ss_pred -HhhccceEEecCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH
Q psy860 79 -FQYLSGIGYCPQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 79 -~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL 156 (178)
..+++.++|+||++.+++..|+.||+.+... ..+....+..+.+.++++.+++.+..++.+.+|||||||||+|||||
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral 161 (252)
T TIGR03005 82 LRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARAL 161 (252)
T ss_pred HHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHH
Confidence 2456789999999999999999999987432 22232233445688899999999888999999999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCCCCC
Q psy860 157 IGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 157 ~~~P~~lllDEPt~gLD~~~~ 177 (178)
+.+|+++||||||+|||+.++
T Consensus 162 ~~~p~llllDEP~~~LD~~~~ 182 (252)
T TIGR03005 162 AMRPKVMLFDEVTSALDPELV 182 (252)
T ss_pred HcCCCEEEEeCCcccCCHHHH
Confidence 999999999999999999764
No 118
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=6.2e-37 Score=238.41 Aligned_cols=148 Identities=22% Similarity=0.219 Sum_probs=131.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~ 91 (178)
.+++++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ...+++++|+||+
T Consensus 13 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (201)
T cd03231 13 RALFSGLSFTLAAGE----ALQVTGPNGSGKT-------TLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHA 81 (201)
T ss_pred ceeeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccc
Confidence 468999999999999 8889999999999 999999999999999999999876432 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+|++||+.++... ...+++.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+|
T Consensus 82 ~~~~~~~tv~e~l~~~~~~------~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 82 PGIKTTLSVLENLRFWHAD------HSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred cccCCCcCHHHHHHhhccc------ccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 9998899999999875311 1345688899999999888999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 156 LD~~~~ 161 (201)
T cd03231 156 LDKAGV 161 (201)
T ss_pred CCHHHH
Confidence 999764
No 119
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.8e-37 Score=246.29 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=132.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---------------
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--------------- 77 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--------------- 77 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++..
T Consensus 18 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 86 (257)
T PRK10619 18 HEVLKGVSLQANAGD----VISIIGSSGSGKS-------TFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQ 86 (257)
T ss_pred EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchH
Confidence 469999999999999 7889999999999 99999999999999999999987642
Q ss_pred HHhhccceEEecCCCCCCCCCCHHHHHHHHHH-hcCCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHH
Q psy860 78 LFQYLSGIGYCPQFNGINEHLTAQEMLECFSA-LRGIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMA 155 (178)
Q Consensus 78 ~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~-~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAra 155 (178)
...++++++|+||++.+++.+|++||+.+... .......+.++++.++++.+++.+. .++++.+|||||||||+||||
T Consensus 87 ~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~lara 166 (257)
T PRK10619 87 LRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARA 166 (257)
T ss_pred HHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHH
Confidence 23456789999999999999999999986432 2222223345678889999999876 488999999999999999999
Q ss_pred HhCCCCeEEeeCCCCCCCCCCC
Q psy860 156 LIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 156 L~~~P~~lllDEPt~gLD~~~~ 177 (178)
|+.+|++++|||||+|||+.++
T Consensus 167 l~~~p~llllDEPt~~LD~~~~ 188 (257)
T PRK10619 167 LAMEPEVLLFDEPTSALDPELV 188 (257)
T ss_pred HhcCCCEEEEeCCcccCCHHHH
Confidence 9999999999999999999764
No 120
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=247.21 Aligned_cols=145 Identities=15% Similarity=0.084 Sum_probs=128.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++. .+++.++|+||++
T Consensus 25 ~~il~~isl~i~~Ge----~~~I~G~NGsGKS-------TLlk~l~Gl~~p~~G~i~~~g~~~~---~~~~~i~~v~q~~ 90 (257)
T PRK11247 25 RTVLNQLDLHIPAGQ----FVAVVGRSGCGKS-------TLLRLLAGLETPSAGELLAGTAPLA---EAREDTRLMFQDA 90 (257)
T ss_pred cceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEHH---HhhCceEEEecCc
Confidence 479999999999999 7889999999999 9999999999999999998886543 4567899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|++||+.+... ....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+||
T Consensus 91 ~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~L 164 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLK------GQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGAL 164 (257)
T ss_pred cCCCCCcHHHHHHhccc------chHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 99988999999986421 122456888999999998889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 165 D~~~~ 169 (257)
T PRK11247 165 DALTR 169 (257)
T ss_pred CHHHH
Confidence 98764
No 121
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-37 Score=248.60 Aligned_cols=154 Identities=15% Similarity=0.089 Sum_probs=130.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v 88 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ...+++.++|+
T Consensus 14 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v 82 (271)
T PRK13638 14 EPVLKGLNLDFSLSP----VTGLVGANGCGKS-------TLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATV 82 (271)
T ss_pred cccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEE
Confidence 469999999999999 8889999999999 99999999999999999999988731 23456789999
Q ss_pred cCCCCC-CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 89 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 89 ~Q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
||++.. ++..++.+|+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 83 ~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDE 162 (271)
T PRK13638 83 FQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDE 162 (271)
T ss_pred eeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 999753 3456899998875444333333334567889999999988899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 163 Pt~~LD~~~~ 172 (271)
T PRK13638 163 PTAGLDPAGR 172 (271)
T ss_pred CcccCCHHHH
Confidence 9999998764
No 122
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-37 Score=255.72 Aligned_cols=162 Identities=10% Similarity=0.026 Sum_probs=132.7
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC----cccccccccccccccH--
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP----FQAAQNSLLMTNIMHL-- 78 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~----~~~g~i~~~g~~~~~~-- 78 (178)
.|...-+..++|+||||+|.+|| +.+|+|+|||||| ||++.++|+.+ +++|+|.++|+++...
T Consensus 12 ~~~~~~~~~~~l~~vsl~i~~Ge----~~~lvG~sGsGKS-------TL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~ 80 (326)
T PRK11022 12 HFGDESAPFRAVDRISYSVKQGE----VVGIVGESGSGKS-------VSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE 80 (326)
T ss_pred EECCCCccEEEEeeeEEEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence 34333333579999999999999 7889999999999 99999999986 4899999999987542
Q ss_pred ---Hhh-ccceEEecCCC--CCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHH
Q psy860 79 ---FQY-LSGIGYCPQFN--GINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKR 148 (178)
Q Consensus 79 ---~~~-~~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQ 148 (178)
.+. ++.|+|+||++ .+++.+|+.+++....... +....+.++++.++++.++|.+ ..++++++|||||||
T Consensus 81 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 81 KERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 222 24799999997 4888999998876654332 3333445667899999999963 568999999999999
Q ss_pred HHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 149 KLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 149 Rv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
||+|||||+.+|++||+||||+|||+.++
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~ 189 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQ 189 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 99999999999999999999999998754
No 123
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=7.3e-37 Score=242.42 Aligned_cols=152 Identities=18% Similarity=0.077 Sum_probs=129.0
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc----ccccccccccccccHHhhccceEEecC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF----QAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~----~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
+++||||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|++.++|+++......++.++|++|
T Consensus 1 ~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 69 (230)
T TIGR02770 1 LVQDLNLSLKRGE----VLALVGESGSGKS-------LTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQ 69 (230)
T ss_pred CccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEec
Confidence 5899999999999 8889999999999 999999999998 899999999887654323357999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC---ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 91 FNG--INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT---EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 91 ~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~---~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
++. +++.+|+.+++.+.....+....+.++++.++++.+++. +..++.+.+|||||||||+|||||+.+|++++|
T Consensus 70 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred CchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 985 556789999987654333322233455688999999997 567899999999999999999999999999999
Q ss_pred eCCCCCCCCCCC
Q psy860 166 KLPFSSQNLYNT 177 (178)
Q Consensus 166 DEPt~gLD~~~~ 177 (178)
||||+|||+.++
T Consensus 150 DEPt~~LD~~~~ 161 (230)
T TIGR02770 150 DEPTTDLDVVNQ 161 (230)
T ss_pred cCCccccCHHHH
Confidence 999999998754
No 124
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-37 Score=249.26 Aligned_cols=154 Identities=16% Similarity=0.100 Sum_probs=131.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v 88 (178)
.+++++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ...+++.|+|+
T Consensus 15 ~~~l~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v 83 (275)
T PRK13639 15 TEALKGINFKAEKGE----MVALLGPNGAGKS-------TLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIV 83 (275)
T ss_pred CeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEE
Confidence 369999999999999 7889999999999 99999999999999999999988742 23456789999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
||++. .+...|+.||+.+.....+....+..+++.++++.+++.+..++++.+||||||||++|||||+.+|++++|||
T Consensus 84 ~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 163 (275)
T PRK13639 84 FQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDE 163 (275)
T ss_pred eeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99973 34457999999865433333333344678889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 164 Pt~gLD~~~~ 173 (275)
T PRK13639 164 PTSGLDPMGA 173 (275)
T ss_pred CCcCCCHHHH
Confidence 9999999764
No 125
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.6e-37 Score=242.84 Aligned_cols=148 Identities=22% Similarity=0.208 Sum_probs=127.2
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCC
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGIN 95 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~ 95 (178)
|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.... ...+|+||++.++
T Consensus 1 l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~~~~~v~q~~~l~ 66 (230)
T TIGR01184 1 LKGVNLTIQQGE----FISLIGHSGCGKS-------TLLNLISGLAQPTSGGVILEGKQITEPG---PDRMVVFQNYSLL 66 (230)
T ss_pred CCceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCCCC---hhheEEecCcccC
Confidence 579999999999 7889999999999 9999999999999999999998775421 1358999999999
Q ss_pred CCCCHHHHHHHHHHh--cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860 96 EHLTAQEMLECFSAL--RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN 173 (178)
Q Consensus 96 ~~ltv~e~l~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD 173 (178)
+.+|+.||+.++... ......+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus 67 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD 146 (230)
T TIGR01184 67 PWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146 (230)
T ss_pred CCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence 999999999875321 122222334567889999999988899999999999999999999999999999999999999
Q ss_pred CCCC
Q psy860 174 LYNT 177 (178)
Q Consensus 174 ~~~~ 177 (178)
+.++
T Consensus 147 ~~~~ 150 (230)
T TIGR01184 147 ALTR 150 (230)
T ss_pred HHHH
Confidence 9764
No 126
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-37 Score=257.18 Aligned_cols=143 Identities=23% Similarity=0.235 Sum_probs=128.0
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccceEEecCC
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSGIGYCPQF 91 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ig~v~Q~ 91 (178)
||||+|+.|| +.+|+|+||+||| ||++++.|+.+|++|++.++|+++.. ....++.++|+||+
T Consensus 16 ~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~ 84 (352)
T PRK11144 16 TVNLTLPAQG----ITAIFGRSGAGKT-------SLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQD 84 (352)
T ss_pred EEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCC
Confidence 8999999999 8889999999999 99999999999999999999987653 23346789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++++|++||+.+... ....+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+|
T Consensus 85 ~~l~~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~ 158 (352)
T PRK11144 85 ARLFPHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred cccCCCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCccc
Confidence 999999999999987432 12345788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 159 LD~~~~ 164 (352)
T PRK11144 159 LDLPRK 164 (352)
T ss_pred CCHHHH
Confidence 999754
No 127
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-37 Score=243.42 Aligned_cols=152 Identities=18% Similarity=0.217 Sum_probs=133.6
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
+|++|||+|.+|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++......++.++|+||++.+
T Consensus 14 ~l~~is~~i~~Ge----~~~i~G~nG~GKS-------tLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~ 82 (235)
T cd03299 14 KLKNVSLEVERGD----YFVILGPTGSGKS-------VLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYAL 82 (235)
T ss_pred eeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCcc
Confidence 7999999999999 7889999999999 9999999999999999999998876533345689999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
++.+|+.||+.+.....+....+..+.+.++++.+++.+..++++.+|||||||||+|||||+.+|++++|||||+|||+
T Consensus 83 ~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~ 162 (235)
T cd03299 83 FPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDV 162 (235)
T ss_pred CCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCH
Confidence 99999999998754443333333455678899999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q psy860 175 YNT 177 (178)
Q Consensus 175 ~~~ 177 (178)
.++
T Consensus 163 ~~~ 165 (235)
T cd03299 163 RTK 165 (235)
T ss_pred HHH
Confidence 764
No 128
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-36 Score=243.68 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=130.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc--HHhhccce
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH--LFQYLSGI 85 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~--~~~~~~~i 85 (178)
.+++++|||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|+|.++|.++.. ..++++++
T Consensus 16 ~~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 84 (250)
T PRK14247 16 VEVLDGVNLEIPDNT----ITALMGPSGSGKS-------TLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRV 84 (250)
T ss_pred eeeeecceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccE
Confidence 469999999999999 8889999999999 99999999986 479999999988754 34566789
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHhcCC--CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 86 GYCPQFNGINEHLTAQEMLECFSALRGI--PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
+|+||++.+++.+|+.||+.+....... ...+..+.+.++++.+++. +..++.+.+|||||||||+|||||+.+
T Consensus 85 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 164 (250)
T PRK14247 85 QMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQ 164 (250)
T ss_pred EEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999888999999999875433221 1123345678899999985 356889999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++++|||||+|||+.++
T Consensus 165 p~lllLDEP~~~LD~~~~ 182 (250)
T PRK14247 165 PEVLLADEPTANLDPENT 182 (250)
T ss_pred CCEEEEcCCCccCCHHHH
Confidence 999999999999999764
No 129
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.2e-36 Score=237.75 Aligned_cols=149 Identities=24% Similarity=0.226 Sum_probs=130.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
..+++++||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..++.++|++|.+
T Consensus 15 ~~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~~~~~~~ 82 (207)
T PRK13539 15 RVLFSGLSFTLAAGE----ALVLTGPNGSGKT-------TLLRLIAGLLPPAAGTIKLDGGDIDDP-DVAEACHYLGHRN 82 (207)
T ss_pred eEEEeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEeCcch-hhHhhcEEecCCC
Confidence 468999999999999 7889999999999 999999999999999999999876432 2667899999988
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.+|+.+.....+ ...+.+.++++.+++.+..++++.+||||||||++|||||+.+|+++||||||+||
T Consensus 83 ~~~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 83 AMKPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred cCCCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 88889999999987554332 12345889999999988889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 159 D~~~~ 163 (207)
T PRK13539 159 DAAAV 163 (207)
T ss_pred CHHHH
Confidence 98764
No 130
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=1e-36 Score=246.41 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=131.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
..+|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+++++|.++... ..+++.++|
T Consensus 24 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 92 (265)
T TIGR02769 24 APVLTNVSLSIEEGE----TVGLLGRSGCGKS-------TLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQL 92 (265)
T ss_pred eEEeeCceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEE
Confidence 479999999999999 8889999999999 999999999999999999999887542 234678999
Q ss_pred ecCCC--CCCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 88 CPQFN--GINEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 88 v~Q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
+||++ .+++.+|+.||+.+.... ......+..+++.++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus 93 v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~il 172 (265)
T TIGR02769 93 VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLI 172 (265)
T ss_pred EecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99997 466789999999765432 2233233456788999999996 6789999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 173 lLDEPt~~LD~~~~ 186 (265)
T TIGR02769 173 VLDEAVSNLDMVLQ 186 (265)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999999753
No 131
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.6e-36 Score=239.87 Aligned_cols=154 Identities=20% Similarity=0.180 Sum_probs=131.8
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC---cccccccccccccccHHhhccceEEe
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP---FQAAQNSLLMTNIMHLFQYLSGIGYC 88 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~---~~~g~i~~~g~~~~~~~~~~~~ig~v 88 (178)
..++++|+||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|.++.. ..++++++|+
T Consensus 19 ~~~~l~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLlk~l~G~~~~~~~~~G~i~~~g~~~~~-~~~~~~i~~~ 86 (226)
T cd03234 19 YARILNDVSLHVESGQ----VMAILGSSGSGKT-------TLLDAISGRVEGGGTTSGQILFNGQPRKP-DQFQKCVAYV 86 (226)
T ss_pred ccccccCceEEEcCCe----EEEEECCCCCCHH-------HHHHHHhCccCCCCCCceEEEECCEECCh-HHhcccEEEe
Confidence 3579999999999999 7889999999999 99999999998 999999999987753 3567789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCC---CCChhHHHHH-HHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGIP---GVKSGPIIDY-WIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~-~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
||++.+++.+|+.||+.+........ .....+++.+ .++.+++.+..++.+.+|||||||||+|||||+.+|++++
T Consensus 87 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~ill 166 (226)
T cd03234 87 RQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLI 166 (226)
T ss_pred CCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999998765433211 1112234555 8999999888899999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 167 lDEP~~gLD~~~~ 179 (226)
T cd03234 167 LDEPTSGLDSFTA 179 (226)
T ss_pred EeCCCcCCCHHHH
Confidence 9999999999764
No 132
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-36 Score=244.42 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=131.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~ 89 (178)
.++|++|||++++|| +.+|+|+||+||| ||++++.|+.+|++|++.++|.++... .. .+.+++|+|
T Consensus 18 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (255)
T PRK11300 18 LLAVNNVNLEVREQE----IVSLIGPNGAGKT-------TVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTF 86 (255)
T ss_pred EEEEEeeeeEEcCCe----EEEEECCCCCCHH-------HHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEec
Confidence 579999999999999 8889999999999 999999999999999999999877542 22 345699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHh----------cCC---CC--CChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHH
Q psy860 90 QFNGINEHLTAQEMLECFSAL----------RGI---PG--VKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAM 154 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~----------~~~---~~--~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAr 154 (178)
|++.+++.+|+.||+.+.... ... .. .+..+.+.++++.+++.+..++++.+|||||||||+|||
T Consensus 87 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~ 166 (255)
T PRK11300 87 QHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIAR 166 (255)
T ss_pred cCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHH
Confidence 999999999999999874321 000 00 122346778899999998899999999999999999999
Q ss_pred HHhCCCCeEEeeCCCCCCCCCCC
Q psy860 155 ALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 155 aL~~~P~~lllDEPt~gLD~~~~ 177 (178)
||+.+|++|||||||+|||+.++
T Consensus 167 al~~~p~llllDEPt~~LD~~~~ 189 (255)
T PRK11300 167 CMVTQPEILMLDEPAAGLNPKET 189 (255)
T ss_pred HHhcCCCEEEEcCCccCCCHHHH
Confidence 99999999999999999999764
No 133
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-37 Score=249.67 Aligned_cols=153 Identities=14% Similarity=0.094 Sum_probs=133.4
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---cccccccccccc--HHhhccceEEe
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---AQNSLLMTNIMH--LFQYLSGIGYC 88 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---g~i~~~g~~~~~--~~~~~~~ig~v 88 (178)
+++++|||+|.+|| +.+|+|+||+||| ||++++.|+.+|++ |++.++|.++.. ....++++||+
T Consensus 21 ~~l~~v~l~i~~Ge----~~~I~G~nGaGKS-------TLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v 89 (282)
T PRK13640 21 PALNDISFSIPRGS----WTALIGHNGSGKS-------TISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIV 89 (282)
T ss_pred cceeeEEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEE
Confidence 59999999999999 8889999999999 99999999999987 899999998754 34556789999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
||++. +++..|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||
T Consensus 90 ~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDE 169 (282)
T PRK13640 90 FQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDE 169 (282)
T ss_pred EECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99984 67789999999875444443333445678899999999998999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 170 Pt~gLD~~~~ 179 (282)
T PRK13640 170 STSMLDPAGK 179 (282)
T ss_pred CcccCCHHHH
Confidence 9999998764
No 134
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=8.9e-37 Score=243.04 Aligned_cols=154 Identities=18% Similarity=0.229 Sum_probs=134.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||++.+|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++......++.++|+||++
T Consensus 13 ~~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~ 81 (237)
T TIGR00968 13 FQALDDVNLEVPTGS----LVALLGPSGSGKS-------TLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHY 81 (237)
T ss_pred eeeeeeEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecCh
Confidence 469999999999999 7789999999999 99999999999999999999988765434467899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++..|+.||+.+.....+.......+.+.++++.+++.+..++.+.+||+||+||++|||||+.+|++++|||||+||
T Consensus 82 ~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~L 161 (237)
T TIGR00968 82 ALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGAL 161 (237)
T ss_pred hhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99999999999987544433322233456788999999998899999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 162 D~~~~ 166 (237)
T TIGR00968 162 DAKVR 166 (237)
T ss_pred CHHHH
Confidence 98764
No 135
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-36 Score=244.70 Aligned_cols=153 Identities=13% Similarity=0.128 Sum_probs=129.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|.+|| +.+|+|+||+||| ||++++.|+.+| ++|+|.++|.++.. ...+++
T Consensus 25 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 93 (258)
T PRK14268 25 KQALKNVSMQIPKNS----VTALIGPSGCGKS-------TFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRK 93 (258)
T ss_pred eeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhh
Confidence 469999999999999 8889999999999 999999999874 89999999987643 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
.++|+||++.+++ .|++||+.+.....+....+..+++.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 94 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 172 (258)
T PRK14268 94 NVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVK 172 (258)
T ss_pred hEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 8999999998887 89999998765443332223345678899999883 456889999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++||||||+|||+.++
T Consensus 173 p~llllDEPt~~LD~~~~ 190 (258)
T PRK14268 173 PKIILFDEPTSALDPIST 190 (258)
T ss_pred CCEEEEeCCCcccCHHHH
Confidence 999999999999999764
No 136
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.2e-36 Score=255.36 Aligned_cols=147 Identities=19% Similarity=0.183 Sum_probs=129.3
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------HhhccceEEecCC
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQYLSGIGYCPQF 91 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~~~~ig~v~Q~ 91 (178)
+|||+|++|| +.+|+|+||+||| ||++++.|+.+|++|++.++|+++... ...++.++|+||+
T Consensus 15 ~isl~i~~Ge----i~~l~G~nGsGKS-------TLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~ 83 (354)
T TIGR02142 15 DADFTLPGQG----VTAIFGRSGSGKT-------TLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQE 83 (354)
T ss_pred EEEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecC
Confidence 8999999999 7889999999999 999999999999999999999887432 2346789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++++|++||+.+..... ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 84 ~~l~~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~ 161 (354)
T TIGR02142 84 ARLFPHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161 (354)
T ss_pred CccCCCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 99999999999998754321 1223345688999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 162 LD~~~~ 167 (354)
T TIGR02142 162 LDDPRK 167 (354)
T ss_pred CCHHHH
Confidence 999764
No 137
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9e-37 Score=248.28 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=133.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++|++|||+|.+|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|.++.. ..+++++++|+||+
T Consensus 21 ~~l~~v~l~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 89 (277)
T PRK13642 21 NQLNGVSFSITKGE----WVSIIGQNGSGKS-------TTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQN 89 (277)
T ss_pred eeeeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEEC
Confidence 58999999999999 8889999999999 99999999999999999999988754 34567789999999
Q ss_pred CC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 92 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 92 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
+. +++..|+.||+.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+
T Consensus 90 ~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 90 PDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred HHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 74 67788999999875443333333334567889999999988999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 170 ~LD~~~~ 176 (277)
T PRK13642 170 MLDPTGR 176 (277)
T ss_pred cCCHHHH
Confidence 9999764
No 138
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-36 Score=243.55 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=130.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----ccccccccccccc----cHHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIM----HLFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~----~~~~~~~ 83 (178)
.++|+||||+|.+|| +.+|+|+||+||| ||++.+.|+.+| ++|+|+++|.++. ...++++
T Consensus 17 ~~~l~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (253)
T PRK14267 17 NHVIKGVDLKIPQNG----VFALMGPSGCGKS-------TLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRR 85 (253)
T ss_pred eeeeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhh
Confidence 479999999999999 7889999999999 999999999887 4999999998875 1235567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCC--CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHh
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGI--PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
+++|+||++.+++.+|+.||+.+....... +..+..+++.++++.+++. +..++++.+|||||||||+|||||+
T Consensus 86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14267 86 EVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALA 165 (253)
T ss_pred ceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHh
Confidence 899999999999999999999875433322 1222345678889999984 3568899999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|++++|||||+|||+.++
T Consensus 166 ~~p~llllDEP~~~LD~~~~ 185 (253)
T PRK14267 166 MKPKILLMDEPTANIDPVGT 185 (253)
T ss_pred cCCCEEEEcCCCccCCHHHH
Confidence 99999999999999999754
No 139
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-36 Score=241.33 Aligned_cols=154 Identities=21% Similarity=0.234 Sum_probs=134.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++++++||+|++|| ..+|+|+||+||| ||++++.|+.+|++|++.++|.++......++.++|+||++
T Consensus 13 ~~il~~i~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 81 (232)
T cd03300 13 FVALDGVSLDIKEGE----FFTLLGPSGCGKT-------TLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNY 81 (232)
T ss_pred eeeeccceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEeccc
Confidence 469999999999999 7789999999999 99999999999999999999988765433467899999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.+|+.+.....+.......+.+.++++.+++.+..++.+.+||+||||||+|||||+.+|++++|||||+||
T Consensus 82 ~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gL 161 (232)
T cd03300 82 ALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161 (232)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99889999999987554433333334556788999999998899999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 162 D~~~~ 166 (232)
T cd03300 162 DLKLR 166 (232)
T ss_pred CHHHH
Confidence 98764
No 140
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.8e-36 Score=235.50 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=131.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~ 91 (178)
.++|+++||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++.. ...+++.++|+||+
T Consensus 14 ~~il~~~s~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q~ 82 (200)
T PRK13540 14 QPLLQQISFHLPAGG----LLHLKGSNGAGKT-------TLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGHR 82 (200)
T ss_pred eeEEeeeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEeccc
Confidence 469999999999999 8889999999999 99999999999999999999988753 34566789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+|+.+|+.+..... .....+.++++.+++.+..++++.+||+||||||+||||++.+|++++|||||+|
T Consensus 83 ~~~~~~~tv~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~ 157 (200)
T PRK13540 83 SGINPYLTLRENCLYDIHFS-----PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVA 157 (200)
T ss_pred cccCcCCCHHHHHHHHHhcC-----cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 98889999999998753221 1234688899999998888899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 158 LD~~~~ 163 (200)
T PRK13540 158 LDELSL 163 (200)
T ss_pred cCHHHH
Confidence 998754
No 141
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-36 Score=243.92 Aligned_cols=154 Identities=19% Similarity=0.168 Sum_probs=132.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||++++|| +.+|+|+||+||| ||++++.|+.+|++|++.++|.++.. ..++++.++|+||
T Consensus 15 ~~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (255)
T PRK11231 15 KRILNDLSLSLPTGK----ITALIGPNGCGKS-------TLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQ 83 (255)
T ss_pred EEEEeeeeeEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecc
Confidence 469999999999999 7889999999999 99999999999999999999987653 3345667999999
Q ss_pred CCCCCCCCCHHHHHHHHHH----hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 91 FNGINEHLTAQEMLECFSA----LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
++.+++.+|+.||+.+... ..+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++|||
T Consensus 84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 163 (255)
T PRK11231 84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163 (255)
T ss_pred cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9988888999999986421 111112233456888999999998899999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 164 EP~~~LD~~~~ 174 (255)
T PRK11231 164 EPTTYLDINHQ 174 (255)
T ss_pred CCcccCCHHHH
Confidence 99999999764
No 142
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-36 Score=243.66 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=130.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|+|.++|.++.. ...+++
T Consensus 17 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~ 85 (258)
T PRK14241 17 FHAVEDVNLNIEPRS----VTAFIGPSGCGKS-------TVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRR 85 (258)
T ss_pred EeeeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhc
Confidence 479999999999999 8889999999999 999999999864 79999999987632 335677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++.+|+.||+.+.....+. ...+..+.+.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 86 ~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 165 (258)
T PRK14241 86 TIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAV 165 (258)
T ss_pred ceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999875543332 2223345678889999984 46788999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 166 ~p~llllDEPt~~LD~~~~ 184 (258)
T PRK14241 166 EPDVLLMDEPCSALDPIST 184 (258)
T ss_pred CCCEEEEcCCCccCCHHHH
Confidence 9999999999999998754
No 143
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.9e-36 Score=245.10 Aligned_cols=155 Identities=14% Similarity=0.022 Sum_probs=131.0
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEec
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCP 89 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~ 89 (178)
.+++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ....++.++|+|
T Consensus 25 ~~~~l~~vsl~i~~Ge----~~~i~G~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 93 (267)
T PRK15112 25 TVEAVKPLSFTLREGQ----TLAIIGENGSGKS-------TLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIF 93 (267)
T ss_pred ccceeeeeeEEecCCC----EEEEEcCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEe
Confidence 3579999999999999 8889999999999 99999999999999999999987753 223346799999
Q ss_pred CCCC--CCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 90 QFNG--INEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 90 Q~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
|++. +++.+|+.+++.+..... .....+..+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus 94 q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 173 (267)
T PRK15112 94 QDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIA 173 (267)
T ss_pred cCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEE
Confidence 9975 567889999988754432 222223345688899999995 677889999999999999999999999999999
Q ss_pred eCCCCCCCCCCC
Q psy860 166 KLPFSSQNLYNT 177 (178)
Q Consensus 166 DEPt~gLD~~~~ 177 (178)
||||+|||+.++
T Consensus 174 DEPt~~LD~~~~ 185 (267)
T PRK15112 174 DEALASLDMSMR 185 (267)
T ss_pred cCCcccCCHHHH
Confidence 999999999764
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-36 Score=245.41 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=131.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|.+|| +.+|+|+||+||| ||++++.|+.+|++|++.++|.++.. ..++++.++|+||
T Consensus 24 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 92 (265)
T PRK10575 24 RTLLHPLSLTFPAGK----VTGLIGHNGSGKS-------TLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ 92 (265)
T ss_pred EEEEeeeeeEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEecc
Confidence 479999999999999 7889999999999 99999999999999999999987643 3355678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHh-cC---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 91 FNGINEHLTAQEMLECFSAL-RG---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~-~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
++.+++.+|+.+|+.+.... .. .......+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 172 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172 (265)
T ss_pred CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 98888899999999764211 11 111223456888999999988889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 173 EPt~~LD~~~~ 183 (265)
T PRK10575 173 EPTSALDIAHQ 183 (265)
T ss_pred CCcccCCHHHH
Confidence 99999999764
No 145
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=242.63 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=128.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|+|.++|.++.. ....++
T Consensus 20 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (254)
T PRK14273 20 FKALNNINIKILKNS----ITALIGPSGCGKS-------TFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRR 88 (254)
T ss_pred ceeecceeeEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhh
Confidence 469999999999999 8889999999999 999999999886 48999999987642 234577
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCC----CccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGL----TEYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L----~~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.++ .+|++||+.+.....+. ...+..+++.++++.+++ .+..++++.+|||||||||+|||||+.
T Consensus 89 ~i~~v~q~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 167 (254)
T PRK14273 89 KIGMVFQTPNPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAI 167 (254)
T ss_pred ceEEEeeccccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 899999998877 48999999876443322 112234567888999987 356788999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++|||||||+|||+.++
T Consensus 168 ~p~lllLDEPt~~LD~~~~ 186 (254)
T PRK14273 168 EPNVILMDEPTSALDPIST 186 (254)
T ss_pred CCCEEEEeCCCcccCHHHH
Confidence 9999999999999999764
No 146
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-36 Score=238.35 Aligned_cols=154 Identities=21% Similarity=0.247 Sum_probs=129.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc--c--cccc--H---Hhh-c
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM--T--NIMH--L---FQY-L 82 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g--~--~~~~--~---~~~-~ 82 (178)
.++|+||||+|.+|| +.+|+|+||+||| ||++++.|+.+|++|+|.+++ . ++.. . .++ +
T Consensus 21 ~~il~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~ 89 (224)
T TIGR02324 21 LPVLKNVSLTVNAGE----CVALSGPSGAGKS-------TLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRR 89 (224)
T ss_pred eEEEecceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHh
Confidence 369999999999999 7889999999999 999999999999999999984 2 3322 1 122 3
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
++++|+||++.+++.+|+.|++.+.....+....+..+++.++++.+++.+ ..++++.+||||||||++|||||+.+|+
T Consensus 90 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~ 169 (224)
T TIGR02324 90 KTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYP 169 (224)
T ss_pred cceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999987543333332334567788999999975 4688999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+++|||||+|||+.++
T Consensus 170 llllDEPt~~LD~~~~ 185 (224)
T TIGR02324 170 ILLLDEPTASLDAANR 185 (224)
T ss_pred EEEEcCCcccCCHHHH
Confidence 9999999999999754
No 147
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-36 Score=241.00 Aligned_cols=150 Identities=16% Similarity=0.113 Sum_probs=128.7
Q ss_pred cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCC
Q psy860 17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE 96 (178)
Q Consensus 17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~ 96 (178)
.+|||+|..|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|+++......++.++|+||++.+++
T Consensus 16 ~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~ 84 (232)
T PRK10771 16 MRFDLTVERGE----RVAILGPSGAGKS-------TLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFS 84 (232)
T ss_pred ceeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEeccccccc
Confidence 48999999999 7889999999999 999999999999999999999987654333567999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
.+|+.||+.+.............+++.++++.+++.+..++++.+|||||||||+||||++.+|+++||||||+|||+.+
T Consensus 85 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~ 164 (232)
T PRK10771 85 HLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPAL 164 (232)
T ss_pred CCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999999764221111112234568889999999988999999999999999999999999999999999999999976
Q ss_pred C
Q psy860 177 T 177 (178)
Q Consensus 177 ~ 177 (178)
+
T Consensus 165 ~ 165 (232)
T PRK10771 165 R 165 (232)
T ss_pred H
Confidence 4
No 148
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-36 Score=235.83 Aligned_cols=150 Identities=18% Similarity=0.245 Sum_probs=132.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++++++||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|+++... ..++.++|++|++
T Consensus 24 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~i~~~-~~~~~i~~~~q~~ 91 (214)
T PRK13543 24 EPVFGPLDFHVDAGE----ALLVQGDNGAGKT-------TLLRVLAGLLHVESGQIQIDGKTATRG-DRSRFMAYLGHLP 91 (214)
T ss_pred ceeeecceEEECCCC----EEEEEcCCCCCHH-------HHHHHHhCCCCCCCeeEEECCEEccch-hhhhceEEeecCc
Confidence 469999999999999 7889999999999 999999999999999999999887543 3345799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.||+.+.....+ ....+.+.++++.+++.+..++++.+||+||||||+||||++.+|++++|||||++|
T Consensus 92 ~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 92 GLKADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred ccccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 88888999999987654332 223456788999999998889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 169 D~~~~ 173 (214)
T PRK13543 169 DLEGI 173 (214)
T ss_pred CHHHH
Confidence 99764
No 149
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-36 Score=245.16 Aligned_cols=153 Identities=10% Similarity=0.011 Sum_probs=132.8
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++|+|+||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|+++|.++.. ..++++.++|+||+
T Consensus 23 ~~l~~isl~i~~Ge----~~~I~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 91 (269)
T PRK13648 23 FTLKDVSFNIPKGQ----WTSIVGHNGSGKS-------TIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQN 91 (269)
T ss_pred cceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeC
Confidence 58999999999999 7889999999999 99999999999999999999988754 34567789999999
Q ss_pred CC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 92 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 92 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
+. +++..|+.+|+.+.....+....+..+++.++++.+++.+..++++.+||+|||||++|||||+.+|+++||||||+
T Consensus 92 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 92 PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred hHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 85 67788999998775443333223334567889999999988999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 172 ~LD~~~~ 178 (269)
T PRK13648 172 MLDPDAR 178 (269)
T ss_pred cCCHHHH
Confidence 9999764
No 150
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=2.1e-36 Score=239.47 Aligned_cols=151 Identities=25% Similarity=0.253 Sum_probs=129.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~ 89 (178)
.++|+||||++++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++... .+ .++.++|+|
T Consensus 13 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 81 (230)
T TIGR03410 13 SHILRGVSLEVPKGE----VTCVLGRNGVGKT-------TLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVP 81 (230)
T ss_pred eEEecceeeEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEec
Confidence 479999999999999 7889999999999 999999999999999999999876532 22 356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-CCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-LTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
|++.+++.+|+.+|+.+....... ...+.+.++++.++ +.+..++++.+|||||||||+|||||+.+|++++||||
T Consensus 82 q~~~~~~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 82 QGREIFPRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred cCCcccCCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 999999999999999875433221 22345677888887 56778999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 159 t~~LD~~~~ 167 (230)
T TIGR03410 159 TEGIQPSII 167 (230)
T ss_pred cccCCHHHH
Confidence 999999764
No 151
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=1.4e-36 Score=252.85 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=133.9
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccH---
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHL--- 78 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~--- 78 (178)
.|..+.|..++++||||+|.+|| +.+|+|+||+||| ||++.++|+.+|+ +|+|.++|+++...
T Consensus 21 ~~~~~~~~~~~l~~vsl~i~~Ge----~~~ivG~sGsGKS-------TL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 21 TFSTPDGDVTAVNDLNFSLRAGE----TLGIVGESGSGKS-------QTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred EEecCCCCEEEEeeeEEEEcCCC----EEEEECCCCchHH-------HHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 34333344579999999999999 7889999999999 9999999999885 99999999987542
Q ss_pred --Hhhc-cceEEecCCC--CCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHHH
Q psy860 79 --FQYL-SGIGYCPQFN--GINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKRK 149 (178)
Q Consensus 79 --~~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQR 149 (178)
.++| +.|+||||++ .+++.+|+.+++....... +....+..+++.++++.+++.+ ..++++++|||||+||
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QR 169 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQR 169 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHH
Confidence 2233 4799999998 6889999999887654333 2333344567889999999974 3478999999999999
Q ss_pred HHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 150 LSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 150 v~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|+|||||+.+|++||+||||++||+.++
T Consensus 170 v~IArAL~~~P~llilDEPts~LD~~~~ 197 (330)
T PRK09473 170 VMIAMALLCRPKLLIADEPTTALDVTVQ 197 (330)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 9999999999999999999999998764
No 152
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-36 Score=247.68 Aligned_cols=153 Identities=15% Similarity=0.108 Sum_probs=128.9
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc-------cHHhhccceE
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM-------HLFQYLSGIG 86 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~-------~~~~~~~~ig 86 (178)
++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++. ....+++.++
T Consensus 25 ~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~ 93 (289)
T PRK13645 25 KALNNTSLTFKKNK----VTCVIGTTGSGKS-------TMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIG 93 (289)
T ss_pred ceeeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEE
Confidence 59999999999999 7889999999999 9999999999999999999998763 2345677899
Q ss_pred EecCCCCC-CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 87 YCPQFNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 87 ~v~Q~~~l-~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
|+||++.. +...|+.||+.+.....+....+..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++||
T Consensus 94 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLl 173 (289)
T PRK13645 94 LVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLV 173 (289)
T ss_pred EEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99999742 23469999998754333332223345677899999995 68899999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 174 LDEPt~~LD~~~~ 186 (289)
T PRK13645 174 LDEPTGGLDPKGE 186 (289)
T ss_pred EeCCcccCCHHHH
Confidence 9999999999764
No 153
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=4.9e-36 Score=237.06 Aligned_cols=151 Identities=19% Similarity=0.107 Sum_probs=130.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++++||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..+++++++|+||
T Consensus 20 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 88 (225)
T PRK10247 20 AKILNNISFSLRAGE----FKLITGPSGCGKS-------TLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQ 88 (225)
T ss_pred ceeeeccEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEec
Confidence 479999999999999 8889999999999 99999999999999999999987653 3345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
++.+++ .|++||+.+....... ....+++.++++.+++. ...++++.+||+||||||+|||||+.+|++++|||||
T Consensus 89 ~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (225)
T PRK10247 89 TPTLFG-DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred cccccc-ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 988876 5999999875433321 22345678899999996 5789999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 166 ~~LD~~~~ 173 (225)
T PRK10247 166 SALDESNK 173 (225)
T ss_pred ccCCHHHH
Confidence 99999764
No 154
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-36 Score=242.98 Aligned_cols=153 Identities=16% Similarity=0.131 Sum_probs=129.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|.++.. ...+++
T Consensus 26 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~ 94 (260)
T PRK10744 26 FHALKNINLDIAKNQ----VTAFIGPSGCGKS-------TLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRA 94 (260)
T ss_pred eEEeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhc
Confidence 469999999999999 8889999999999 99999999975 589999999988742 235677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++ .|+++|+.+..... +.+..+..+++.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 95 ~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 173 (260)
T PRK10744 95 KVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAI 173 (260)
T ss_pred ceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHC
Confidence 8999999998877 89999998754332 233233345688899999974 45788999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 174 ~p~lllLDEPt~~LD~~~~ 192 (260)
T PRK10744 174 RPEVLLLDEPCSALDPIST 192 (260)
T ss_pred CCCEEEEcCCCccCCHHHH
Confidence 9999999999999999764
No 155
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=7.4e-37 Score=231.00 Aligned_cols=149 Identities=17% Similarity=0.143 Sum_probs=133.3
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCC
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEH 97 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ 97 (178)
..|+.|+.|| .+||+|++|+||| ||+..+.|+..|++|+++++|++......+.|-++++||+.++|.+
T Consensus 17 ~fdl~v~~ge----~vAi~GpSGaGKS-------TLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaH 85 (231)
T COG3840 17 RFDLTVPAGE----IVAILGPSGAGKS-------TLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAH 85 (231)
T ss_pred EEEEeecCCc----EEEEECCCCccHH-------HHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchh
Confidence 4577899999 8889999999999 9999999999999999999999988777777789999999999999
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+||.+|+.+...-.-.-..+.+++++.++..+||..+.++.|.+|||||||||++||+|+.+-.+++||||+|+|||.-|
T Consensus 86 LtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR 165 (231)
T COG3840 86 LTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165 (231)
T ss_pred hhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHH
Confidence 99999998754322122345677899999999999999999999999999999999999999999999999999999643
No 156
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=3.5e-36 Score=241.98 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=132.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..+.++.++|+||
T Consensus 14 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 82 (256)
T TIGR03873 14 RLIVDGVDVTAPPGS----LTGLLGPNGSGKS-------TLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQ 82 (256)
T ss_pred EEEEeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecc
Confidence 469999999999999 7889999999999 99999999999999999999987754 2345667999999
Q ss_pred CCCCCCCCCHHHHHHHHHH-h---cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 91 FNGINEHLTAQEMLECFSA-L---RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~-~---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
++.+++.+|+.||+.++.. . ......+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++||
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 162 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD 162 (256)
T ss_pred cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9888888999999987421 1 11112233456888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 163 EPt~~LD~~~~ 173 (256)
T TIGR03873 163 EPTNHLDVRAQ 173 (256)
T ss_pred CccccCCHHHH
Confidence 99999998764
No 157
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-36 Score=240.06 Aligned_cols=149 Identities=19% Similarity=0.240 Sum_probs=129.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+|+||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ...+++.++|+||
T Consensus 16 ~~~l~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q 84 (241)
T PRK14250 16 KEILKDISVKFEGGA----IYTIVGPSGAGKS-------TLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQ 84 (241)
T ss_pred eeeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEec
Confidence 469999999999999 7889999999999 99999999999999999999987753 3355678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
++.+++ .|+.||+.+...... ...+++.++++.+++. +..++.+.+|||||||||+|||||+.+|+++||||||
T Consensus 85 ~~~~~~-~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 85 QPHLFE-GTVKDNIEYGPMLKG----EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred Cchhch-hhHHHHHhcchhhcC----cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 988876 699999876433221 2245678899999996 6788999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 160 ~~LD~~~~ 167 (241)
T PRK14250 160 SALDPTST 167 (241)
T ss_pred ccCCHHHH
Confidence 99999764
No 158
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-36 Score=244.28 Aligned_cols=154 Identities=16% Similarity=0.129 Sum_probs=131.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ....++.++|+||
T Consensus 20 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q 88 (265)
T PRK10253 20 YTVAENLTVEIPDGH----FTAIIGPNGCGKS-------TLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQ 88 (265)
T ss_pred EEEeeecceEECCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeec
Confidence 469999999999999 7889999999999 99999999999999999999987754 3345568999999
Q ss_pred CCCCCCCCCHHHHHHHHHH-hcC---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 91 FNGINEHLTAQEMLECFSA-LRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~-~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
++.+++..|+.+|+.+... ... .......+++.++++.+++.+..++.+.+||||||||++|||||+.+|++++||
T Consensus 89 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 168 (265)
T PRK10253 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168 (265)
T ss_pred cCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999889999999976421 110 011123446788999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 169 EPt~gLD~~~~ 179 (265)
T PRK10253 169 EPTTWLDISHQ 179 (265)
T ss_pred CccccCCHHHH
Confidence 99999998754
No 159
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-36 Score=240.52 Aligned_cols=152 Identities=17% Similarity=0.156 Sum_probs=129.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H-hhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F-QYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~-~~~~~ig~v~ 89 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++++.|+.+|++|++.++|.++... . ..++.++|+|
T Consensus 18 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 86 (237)
T PRK11614 18 IQALHEVSLHINQGE----IVTLIGANGAGKT-------TLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVP 86 (237)
T ss_pred ceeeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEec
Confidence 579999999999999 7889999999999 999999999999999999999887543 2 2466899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
|++.+++.+|+.+|+.+..... ...+..+.+.++++.+ ++.+..++++.+|||||||||+|||||+.+|++++||||
T Consensus 87 q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 87 EGRRVFSRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred cCcccCCCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 9999999999999998743221 1222344567778888 577777889999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 165 t~~LD~~~~ 173 (237)
T PRK11614 165 SLGLAPIII 173 (237)
T ss_pred cccCCHHHH
Confidence 999999764
No 160
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=4.2e-36 Score=242.32 Aligned_cols=154 Identities=16% Similarity=0.146 Sum_probs=130.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---ccccccccccccc-------HHhhc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMH-------LFQYL 82 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~-------~~~~~ 82 (178)
.++|++|||++.+|| +.+|+|+||+||| ||++.+.|+.+|+ +|+++++|.++.. ....+
T Consensus 17 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 85 (262)
T PRK09984 17 HQALHAVDLNIHHGE----MVALLGPSGSGKS-------TLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSR 85 (262)
T ss_pred eEEEecceEEEcCCc----EEEEECCCCCCHH-------HHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHH
Confidence 479999999999999 7889999999999 9999999998876 4999999987642 23456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhc--------CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHH
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALR--------GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAM 154 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~--------~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAr 154 (178)
++++|+||++.+++.+|+.+|+.+..... .....+..+++.++++.+++.+..++.+.+||+||||||+|||
T Consensus 86 ~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar 165 (262)
T PRK09984 86 ANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIAR 165 (262)
T ss_pred hheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHH
Confidence 78999999999999999999997643210 1111233457889999999988889999999999999999999
Q ss_pred HHhCCCCeEEeeCCCCCCCCCCC
Q psy860 155 ALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 155 aL~~~P~~lllDEPt~gLD~~~~ 177 (178)
||+.+|++|||||||+|||+.++
T Consensus 166 al~~~p~llllDEPt~~LD~~~~ 188 (262)
T PRK09984 166 ALMQQAKVILADEPIASLDPESA 188 (262)
T ss_pred HHhcCCCEEEecCccccCCHHHH
Confidence 99999999999999999998754
No 161
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-36 Score=240.30 Aligned_cols=153 Identities=17% Similarity=0.124 Sum_probs=128.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|+++.. ...+++
T Consensus 19 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 87 (253)
T PRK14242 19 FQALHDISLEFEQNQ----VTALIGPSGCGKS-------TFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRR 87 (253)
T ss_pred eeeecceeEEEeCCC----EEEEECCCCCCHH-------HHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhh
Confidence 469999999999999 7889999999999 99999999853 689999999988743 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|+.||+.+.....+.. .....+++.++++.+++.+ ..++.+.+|||||||||+|||||+.
T Consensus 88 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 166 (253)
T PRK14242 88 RVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAV 166 (253)
T ss_pred cEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 8999999998887 59999998764443322 1223456788899999843 4688899999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++|||||||+|||+.++
T Consensus 167 ~p~llllDEPt~~LD~~~~ 185 (253)
T PRK14242 167 EPEVLLMDEPASALDPIAT 185 (253)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999998754
No 162
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.3e-36 Score=263.64 Aligned_cols=154 Identities=18% Similarity=0.078 Sum_probs=132.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v~ 89 (178)
.++|+||||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... .. .+++++|+|
T Consensus 17 ~~~l~~is~~i~~Ge----~~~l~G~NGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 85 (501)
T PRK10762 17 VKALSGAALNVYPGR----VMALVGENGAGKS-------TMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIH 85 (501)
T ss_pred eEEeeeeeEEEcCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 479999999999999 8889999999999 999999999999999999999876432 22 356799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhc---C-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 90 QFNGINEHLTAQEMLECFSALR---G-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~---~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
|++.+++.+||+|++.+..... . ....+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 86 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 165 (501)
T PRK10762 86 QELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIM 165 (501)
T ss_pred cchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999998753221 1 11122345688899999999888999999999999999999999999999999
Q ss_pred eCCCCCCCCCCC
Q psy860 166 KLPFSSQNLYNT 177 (178)
Q Consensus 166 DEPt~gLD~~~~ 177 (178)
||||+|||+.++
T Consensus 166 DEPt~~LD~~~~ 177 (501)
T PRK10762 166 DEPTDALTDTET 177 (501)
T ss_pred eCCcCCCCHHHH
Confidence 999999999764
No 163
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=6.6e-36 Score=238.15 Aligned_cols=154 Identities=15% Similarity=0.147 Sum_probs=128.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--CcccccccccccccccH--Hh-hccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLLMTNIMHL--FQ-YLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~g~~~~~~--~~-~~~~ig~ 87 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+. +|++|+|.++|.++... .. .+.+++|
T Consensus 13 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 13 KEILKGVNLTVKKGE----IHAIMGPNGSGKS-------TLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred EEEEeccceEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEe
Confidence 469999999999999 8889999999999 9999999994 79999999999877542 22 2446999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhc-C------CCCCChhHHHHHHHHHcCCC-ccccCcCC-CCChHHHHHHHHHHHHhC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALR-G------IPGVKSGPIIDYWIDLLGLT-EYRHRVSG-RYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~-~------~~~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGqkQRv~IAraL~~ 158 (178)
+||++.+++.+|+.+++.+..... . ....+..+++.++++.+++. ...++.+. +|||||||||+|||||+.
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~ 161 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL 161 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence 999999999999999998753321 1 11122245678899999997 56788887 599999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 162 ~p~llllDEPt~~LD~~~~ 180 (243)
T TIGR01978 162 EPKLAILDEIDSGLDIDAL 180 (243)
T ss_pred CCCEEEecCCcccCCHHHH
Confidence 9999999999999999764
No 164
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=7e-36 Score=235.59 Aligned_cols=148 Identities=20% Similarity=0.198 Sum_probs=130.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+++||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... . ++.++|+||++
T Consensus 13 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~~~~~~~~-~-~~~~~~~~q~~ 79 (223)
T TIGR03740 13 QTAVNNISLTVPKNS----VYGLLGPNGAGKS-------TLLKMITGILRPTSGEIIFDGHPWTRK-D-LHKIGSLIESP 79 (223)
T ss_pred EEEEeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEecccc-c-cccEEEEcCCC
Confidence 469999999999999 7889999999999 999999999999999999999876432 1 24799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|++||+.++....+. ..+++.++++.+++.+..++.+.+||||||||++||||++.+|++++|||||+||
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~L 155 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155 (223)
T ss_pred CccccCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCC
Confidence 988899999999876544332 2456888999999998899999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 156 D~~~~ 160 (223)
T TIGR03740 156 DPIGI 160 (223)
T ss_pred CHHHH
Confidence 99764
No 165
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-36 Score=241.66 Aligned_cols=153 Identities=16% Similarity=0.169 Sum_probs=129.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|+|+++|.++.. ...+++
T Consensus 32 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~ 100 (267)
T PRK14235 32 KQALFDVDLDIPEKT----VTAFIGPSGCGKS-------TFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRA 100 (267)
T ss_pred EEEEEEEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhh
Confidence 469999999999999 7889999999999 999999999764 89999999988743 335567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCC--CCCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHh
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGI--PGVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
.++|+||++.+++. |+.||+.+.....+. ...+..+++.++++.+++.+ ..++.+.+|||||||||+|||||+
T Consensus 101 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~ 179 (267)
T PRK14235 101 RVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIA 179 (267)
T ss_pred ceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 89999999988874 999999875543332 12233456788999999953 467889999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|++|||||||+|||+.++
T Consensus 180 ~~p~lllLDEPt~~LD~~~~ 199 (267)
T PRK14235 180 VSPEVILMDEPCSALDPIAT 199 (267)
T ss_pred cCCCEEEEeCCCcCCCHHHH
Confidence 99999999999999999764
No 166
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-36 Score=250.27 Aligned_cols=162 Identities=12% Similarity=0.045 Sum_probs=130.6
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC----cccccccccccccccH--
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP----FQAAQNSLLMTNIMHL-- 78 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~----~~~g~i~~~g~~~~~~-- 78 (178)
.|..+.|...+++||||+|..|| +.+|+|+||+||| ||++.++|+.+ |++|+|.++|+++...
T Consensus 12 ~y~~~~~~~~~l~~vsl~i~~Ge----~~~ivG~sGsGKS-------TLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~ 80 (330)
T PRK15093 12 EFKTSDGWVKAVDRVSMTLTEGE----IRGLVGESGSGKS-------LIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP 80 (330)
T ss_pred EEeCCCCCEEEEeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence 35333344579999999999999 7889999999999 99999999986 5899999999987542
Q ss_pred H---hh-ccceEEecCCCC--CCCCCCHHHHHHHHHHhc---CC---CCCChhHHHHHHHHHcCCCc---cccCcCCCCC
Q psy860 79 F---QY-LSGIGYCPQFNG--INEHLTAQEMLECFSALR---GI---PGVKSGPIIDYWIDLLGLTE---YRHRVSGRYS 143 (178)
Q Consensus 79 ~---~~-~~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~---~~---~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LS 143 (178)
. .. ++.|+||||++. +++.+|+.+++....... +. ...+.++++.++++.++|.+ ..++++.+||
T Consensus 81 ~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LS 160 (330)
T PRK15093 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT 160 (330)
T ss_pred HHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCC
Confidence 2 22 357999999975 678899999987532211 10 11233457889999999974 4589999999
Q ss_pred hHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 144 GGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 144 gGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|||||||+|||||+.+|++||+||||++||+.++
T Consensus 161 gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~ 194 (330)
T PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQ 194 (330)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHH
Confidence 9999999999999999999999999999998764
No 167
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-36 Score=267.11 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=133.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
..+|++|||+|++|| +.+|+|+|||||| ||++.++|+.+|++|+|+++|+++... ..++++|+|
T Consensus 337 ~~~l~~vs~~i~~Ge----~~~lvG~nGsGKS-------TLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~ 405 (623)
T PRK10261 337 VHAVEKVSFDLWPGE----TLSLVGESGSGKS-------TTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQF 405 (623)
T ss_pred eEEEeeeEeEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEE
Confidence 468999999999999 7889999999999 999999999999999999999877532 235678999
Q ss_pred ecCCC--CCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 88 CPQFN--GINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 88 v~Q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
+||++ .+++.+||.+++.+.....+. ...+.++++.++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 406 v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~ll 485 (623)
T PRK10261 406 IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVI 485 (623)
T ss_pred EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99997 588999999999875444332 2223446788999999996 6789999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||++||+.++
T Consensus 486 llDEPts~LD~~~~ 499 (623)
T PRK10261 486 IADEAVSALDVSIR 499 (623)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999998764
No 168
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.4e-36 Score=233.42 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=123.2
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC---cccccccccccccccH-H
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP---FQAAQNSLLMTNIMHL-F 79 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~---~~~g~i~~~g~~~~~~-~ 79 (178)
|.|.++-+..++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|.++... .
T Consensus 11 ~~~~~~~~~~~il~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~ 79 (202)
T cd03233 11 FTTGKGRSKIPILKDFSGVVKPGE----MVLVLGRPGSGCS-------TLLKALANRTEGNVSVEGDIHYNGIPYKEFAE 79 (202)
T ss_pred EEeccCCCCceeeeeEEEEECCCc----EEEEECCCCCCHH-------HHHHHhcccCCCCCCcceEEEECCEECccchh
Confidence 678777666789999999999999 8889999999999 99999999988 8999999999887653 3
Q ss_pred hhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 80 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 80 ~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
..++.++|+||++.+++.+|++||+.+..... .++.+.+||+|||||++|||||+.+
T Consensus 80 ~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------~~~~~~~LS~Ge~qrl~laral~~~ 136 (202)
T cd03233 80 KYPGEIIYVSEEDVHFPTLTVRETLDFALRCK-----------------------GNEFVRGISGGERKRVSIAEALVSR 136 (202)
T ss_pred hhcceEEEEecccccCCCCcHHHHHhhhhhhc-----------------------cccchhhCCHHHHHHHHHHHHHhhC
Confidence 45678999999999999999999987643210 5677899999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++||||||+|||+.++
T Consensus 137 p~llllDEPt~~LD~~~~ 154 (202)
T cd03233 137 ASVLCWDNSTRGLDSSTA 154 (202)
T ss_pred CCEEEEcCCCccCCHHHH
Confidence 999999999999999764
No 169
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-36 Score=262.76 Aligned_cols=155 Identities=15% Similarity=0.039 Sum_probs=132.7
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--ccccccccccccccH--H-hhccceE
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--QAAQNSLLMTNIMHL--F-QYLSGIG 86 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--~~g~i~~~g~~~~~~--~-~~~~~ig 86 (178)
..++|+||||+|+.|| +.+|+|+|||||| ||++.+.|+.+| ++|+|.++|.++... . ..++.++
T Consensus 17 ~~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (506)
T PRK13549 17 GVKALDNVSLKVRAGE----IVSLCGENGAGKS-------TLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIA 85 (506)
T ss_pred CeEeecceeEEEeCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeE
Confidence 3579999999999999 8889999999999 999999999886 899999999887542 2 2356799
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhc--C-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALR--G-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~--~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
|+||++.+++.+|++||+.+..... + ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|
T Consensus 86 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~ll 165 (506)
T PRK13549 86 IIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLL 165 (506)
T ss_pred EEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999998754322 1 122233456889999999998889999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 166 lLDEPt~~LD~~~~ 179 (506)
T PRK13549 166 ILDEPTASLTESET 179 (506)
T ss_pred EEeCCCCCCCHHHH
Confidence 99999999999764
No 170
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=237.54 Aligned_cols=154 Identities=15% Similarity=0.111 Sum_probs=129.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+|+||+|++|| +.+|+|+||+||| ||++.+.|+.+ | ++|++.++|.++.. ...+++
T Consensus 17 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~ 85 (252)
T PRK14256 17 NHAVKDVSMDFPENS----VTAIIGPSGCGKS-------TVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRR 85 (252)
T ss_pred eeEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhc
Confidence 469999999999999 7889999999999 99999999975 4 68999999988743 235677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++.+|+.||+.+.....+. ...+..+++.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 86 ~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~ 165 (252)
T PRK14256 86 RVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAV 165 (252)
T ss_pred cEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999865433221 2223345678889999985 35678899999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 166 ~p~llllDEP~~gLD~~~~ 184 (252)
T PRK14256 166 KPEVILMDEPASALDPIST 184 (252)
T ss_pred CCCEEEEcCCcccCCHHHH
Confidence 9999999999999999764
No 171
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-36 Score=241.39 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=128.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----cccccccccccccc----cHHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIM----HLFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~----~~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|.++. +...+++
T Consensus 26 ~~il~~is~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~ 94 (269)
T PRK14259 26 FEAVKNVFCDIPRGK----VTALIGPSGCGKS-------TVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRR 94 (269)
T ss_pred EEEEcceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhh
Confidence 469999999999999 7889999999999 99999999976 69999999998764 2345667
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
.++|+||++.+++ .|++||+.+.....+.. .+..+++.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 95 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 172 (269)
T PRK14259 95 RIGMVFQQPNPFP-KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIE 172 (269)
T ss_pred ceEEEccCCccch-hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcC
Confidence 8999999998887 49999998765443322 22345677788888773 457889999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 173 p~lllLDEPt~gLD~~~~ 190 (269)
T PRK14259 173 PEVILMDEPCSALDPIST 190 (269)
T ss_pred CCEEEEcCCCccCCHHHH
Confidence 999999999999998754
No 172
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=237.68 Aligned_cols=153 Identities=16% Similarity=0.149 Sum_probs=129.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC---Cccccccccccccccc--HHhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS---PFQAAQNSLLMTNIMH--LFQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~---~~~~g~i~~~g~~~~~--~~~~~~~ig~ 87 (178)
.++|+|+||+|.+|| +.+|+|+||+||| ||++++.|+. +|++|+|.++|+++.. ...+++.++|
T Consensus 15 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~ 83 (246)
T PRK14269 15 KQALFDINMQIEQNK----ITALIGASGCGKS-------TFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGM 83 (246)
T ss_pred EeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEE
Confidence 479999999999999 8889999999999 9999999986 3799999999998754 3455678999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCC--CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIP--GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+||++.+++ .|++||+.++....+.. ....++++.++++.+++. +..++.+.+|||||||||+|||||+.+|+
T Consensus 84 ~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 162 (246)
T PRK14269 84 VFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK 162 (246)
T ss_pred EecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 999998886 69999998765443321 123345678899999995 34678899999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+++|||||+|||+.++
T Consensus 163 lllLDEP~~~LD~~~~ 178 (246)
T PRK14269 163 LLLLDEPTSALDPISS 178 (246)
T ss_pred EEEEcCCcccCCHHHH
Confidence 9999999999998754
No 173
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.8e-36 Score=262.11 Aligned_cols=155 Identities=19% Similarity=0.056 Sum_probs=132.1
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh-hccceEEe
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-YLSGIGYC 88 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-~~~~ig~v 88 (178)
..++|+||||+|+.|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++... .+ .+++++|+
T Consensus 17 ~~~il~~vs~~i~~Ge----~~~liG~nGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v 85 (510)
T PRK09700 17 PVHALKSVNLTVYPGE----IHALLGENGAGKS-------TLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGII 85 (510)
T ss_pred CeEEeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEE
Confidence 3469999999999999 7889999999999 999999999999999999999887542 22 34579999
Q ss_pred cCCCCCCCCCCHHHHHHHHHH----hcCC---CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 89 PQFNGINEHLTAQEMLECFSA----LRGI---PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~----~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
||++.+++.+||.||+.+... ..+. ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ 165 (510)
T PRK09700 86 YQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAK 165 (510)
T ss_pred eecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999976421 1111 111234568889999999988999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|||||||+|||+.++
T Consensus 166 lllLDEPt~~LD~~~~ 181 (510)
T PRK09700 166 VIIMDEPTSSLTNKEV 181 (510)
T ss_pred EEEEeCCCCCCCHHHH
Confidence 9999999999999764
No 174
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=266.62 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=133.5
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--------
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM-------- 76 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~-------- 76 (178)
.|.++-+..++|+||||+|..|| +.+|+|+|||||| ||++++.|+.+|++|.|.++|..+.
T Consensus 21 ~y~~~~~~~~~l~~is~~v~~Ge----~~~lvG~nGsGKS-------TLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 21 AFMQEQQKIAAVRNLSFSLQRGE----TLAIVGESGSGKS-------VTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred EecCCCCceeEEEeeEEEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 45332233579999999999999 8889999999999 9999999999999999988876331
Q ss_pred --c-----HHhhc-cceEEecCCC--CCCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCCCc---cccCcCCCC
Q psy860 77 --H-----LFQYL-SGIGYCPQFN--GINEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRY 142 (178)
Q Consensus 77 --~-----~~~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~L 142 (178)
+ ..+++ +.||||||++ .+++.+||.||+.+..... +....+.++++.++++.+||.+ ..++++.+|
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~L 169 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQL 169 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccC
Confidence 1 12233 4799999998 6788899999998865442 3443345567889999999963 578999999
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 143 SGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 143 SgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
||||||||+|||||+.+|++|||||||++||+.++
T Consensus 170 SgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~ 204 (623)
T PRK10261 170 SGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQ 204 (623)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHH
Confidence 99999999999999999999999999999999764
No 175
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-35 Score=237.02 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=129.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+++||+|.+|| +.+|+|+||+||| ||++.+.|+.+| ++|++.++|.++.. ....++
T Consensus 17 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (251)
T PRK14270 17 KQALNDINLPIYENK----ITALIGPSGCGKS-------TFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRK 85 (251)
T ss_pred eeeeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHh
Confidence 469999999999999 7889999999999 999999999764 79999999988743 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|++||+.+.....+.. ..+..+++.++++.+++. +..++.+.+||+||||||+|||||+.
T Consensus 86 ~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 164 (251)
T PRK14270 86 RVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAV 164 (251)
T ss_pred heEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 8999999998887 89999998765443321 223345677889999874 45788999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 165 ~p~llllDEP~~~LD~~~~ 183 (251)
T PRK14270 165 KPDVILMDEPTSALDPIST 183 (251)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999999764
No 176
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-35 Score=236.48 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=128.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~ 83 (178)
+++++|+||+|++|| +.+|+|+||+||| ||++.+.|+.+ | ++|+|.++|.++.. ...+++
T Consensus 16 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14240 16 FQALKKINLDIEENQ----VTALIGPSGCGKS-------TFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRK 84 (250)
T ss_pred ceeeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhc
Confidence 479999999999999 7889999999999 99999999865 2 69999999988753 234577
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|+.+|+.+.....+.. ..+..+++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 85 ~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14240 85 RVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAV 163 (250)
T ss_pred cEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhc
Confidence 8999999988877 89999998765443322 122345678888888874 45688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 164 ~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14240 164 EPEVLLMDEPTSALDPIST 182 (250)
T ss_pred CCCEEEEeCCCccCCHHHH
Confidence 9999999999999999764
No 177
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=256.07 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=136.5
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc----ccHHhhccce
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI----MHLFQYLSGI 85 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~----~~~~~~~~~i 85 (178)
.+...+++||||++.+|| ..+|+|.|||||| |+.+.+.|+.+|++|.+.++|.+. .+....|+.+
T Consensus 301 ~~~~~Av~~VSf~l~~GE----~lglVGeSGsGKS-------Tlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~ 369 (539)
T COG1123 301 RGEVKAVDDVSFDLREGE----TLGLVGESGSGKS-------TLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRI 369 (539)
T ss_pred ccceeeeeeeeeEecCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhhe
Confidence 355789999999999999 6669999999999 999999999999999999999872 1234567789
Q ss_pred EEecCCC--CCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 86 GYCPQFN--GINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 86 g~v~Q~~--~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
-++||+| .++|.+||.+++......... ...+.++++.++++.++|.+ ..+++|++|||||||||+|||||+.+|+
T Consensus 370 QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~ 449 (539)
T COG1123 370 QMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPK 449 (539)
T ss_pred EEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCC
Confidence 9999987 699999999999887765432 23455567999999999984 8999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|++|||||.||+..+
T Consensus 450 lli~DEp~SaLDvsvq 465 (539)
T COG1123 450 LLILDEPVSALDVSVQ 465 (539)
T ss_pred EEEecCCccccCHHHH
Confidence 9999999999999753
No 178
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=5.3e-36 Score=223.91 Aligned_cols=155 Identities=17% Similarity=0.115 Sum_probs=139.6
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEE
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGY 87 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~ 87 (178)
.+..++|+++||.+++|| |.+|.||+||||| |+++.+.-+.+|++|.+++.|+++.. +..+|..|+|
T Consensus 13 a~~a~il~~isl~v~~Ge----~iaitGPSG~GKS-------tllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY 81 (223)
T COG4619 13 AGDAKILNNISLSVRAGE----FIAITGPSGCGKS-------TLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81 (223)
T ss_pred cCCCeeecceeeeecCCc----eEEEeCCCCccHH-------HHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHH
Confidence 344689999999999999 9999999999999 99999999999999999999999875 5778999999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|.|.|.+|+. ||++|+.|+..++.. +-++.++.+.++.+++. ...++.+.+||||+|||++|+|-|..-|++|+||
T Consensus 82 ~~Q~paLfg~-tVeDNlifP~~~r~r--r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLD 158 (223)
T COG4619 82 CAQTPALFGD-TVEDNLIFPWQIRNR--RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLD 158 (223)
T ss_pred HHcCcccccc-chhhccccchHHhcc--CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEec
Confidence 9999999875 999999998777643 23567788999999997 5779999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q psy860 167 LPFSSQNLYNTT 178 (178)
Q Consensus 167 EPt~gLD~~~~~ 178 (178)
||||+||+.+.+
T Consensus 159 E~TsALD~~nkr 170 (223)
T COG4619 159 EITSALDESNKR 170 (223)
T ss_pred CchhhcChhhHH
Confidence 999999998753
No 179
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.6e-36 Score=242.71 Aligned_cols=161 Identities=15% Similarity=0.147 Sum_probs=135.6
Q ss_pred hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-c----ccccccccccccccHH-
Q psy860 6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-F----QAAQNSLLMTNIMHLF- 79 (178)
Q Consensus 6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~----~~g~i~~~g~~~~~~~- 79 (178)
|....|...+++||||+|.+|| ..+|+|.|||||| ++.+.++|+++ | .+|++.++|+++..+.
T Consensus 11 f~~~~g~v~av~~vs~~i~~GE----~lgiVGESGsGKS-------~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~ 79 (316)
T COG0444 11 FPTDAGVVKAVDGVSFELKKGE----ILGIVGESGSGKS-------VLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79 (316)
T ss_pred EecCCccEEEEeceeEEEcCCc----EEEEEcCCCCCHH-------HHHHHHHhccCCCCCeEeeeEEEECCcccccCCH
Confidence 4555567889999999999999 6779999999999 88999999986 3 6789999999875432
Q ss_pred ----hhc-cceEEecCCC--CCCCCCCHHHHHHHHHHhc-CC-CCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHH
Q psy860 80 ----QYL-SGIGYCPQFN--GINEHLTAQEMLECFSALR-GI-PGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNK 147 (178)
Q Consensus 80 ----~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~-~~-~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqk 147 (178)
++| +.|+|+||++ .+.|-+|+.+.+.-..... +. .+++..+++.++|+.+++.+ ..+.+|++|||||+
T Consensus 80 ~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 343 5799999997 5899999998887655543 23 34556778999999999974 66999999999999
Q ss_pred HHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 148 RKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 148 QRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|||.||.||+.+|++||.||||++||+..+
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~Q 189 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQ 189 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence 999999999999999999999999998654
No 180
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=258.50 Aligned_cols=154 Identities=14% Similarity=0.010 Sum_probs=132.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~ 89 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|+++.. ....+++++|+|
T Consensus 11 ~~il~~vs~~i~~Ge----~~~liG~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 11 VKALDNVNLKVRPHS----IHALMGENGAGKS-------TLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred EEeeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 479999999999999 7889999999999 99999999999999999999987743 223456899999
Q ss_pred CCCCCCCCCCHHHHHHHHHH-hcCC--CCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 90 QFNGINEHLTAQEMLECFSA-LRGI--PGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~-~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|++.+++.+||.||+.+... ..+. ...+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLD 159 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMD 159 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 99988999999999976431 1111 11223456888999999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 160 EPt~~LD~~~~ 170 (491)
T PRK10982 160 EPTSSLTEKEV 170 (491)
T ss_pred CCCCCCCHHHH
Confidence 99999999754
No 181
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=237.56 Aligned_cols=153 Identities=18% Similarity=0.171 Sum_probs=128.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+ | ++|++.++|.++.. ...+++
T Consensus 25 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 93 (259)
T PRK14274 25 HHALKNINLSIPENE----VTAIIGPSGCGKS-------TFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRK 93 (259)
T ss_pred eeeEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhh
Confidence 479999999999999 8889999999999 99999999976 3 68999999988742 335567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++. |++||+.+.....+.. ..+..+++.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 94 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~ 172 (259)
T PRK14274 94 NIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALAT 172 (259)
T ss_pred ceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 89999999988875 9999998764443321 122345677889999985 34688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 173 ~p~llllDEPt~~LD~~~~ 191 (259)
T PRK14274 173 NPDVLLMDEPTSALDPVST 191 (259)
T ss_pred CCCEEEEcCCcccCCHHHH
Confidence 9999999999999999764
No 182
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-35 Score=259.23 Aligned_cols=154 Identities=16% Similarity=0.007 Sum_probs=132.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~ 89 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|.++.. ...++++++|+|
T Consensus 17 ~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~ 85 (501)
T PRK11288 17 VKALDDISFDCRAGQ----VHALMGENGAGKS-------TLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIY 85 (501)
T ss_pred EEEEeeeeEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEE
Confidence 469999999999999 7889999999999 99999999999999999999987643 223567899999
Q ss_pred CCCCCCCCCCHHHHHHHHHH--hcC-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 90 QFNGINEHLTAQEMLECFSA--LRG-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~--~~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|++.+++.+|+.+|+.+... ..+ ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||
T Consensus 86 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (501)
T PRK11288 86 QELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFD 165 (501)
T ss_pred echhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 99999999999999987431 111 122233457888999999988889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 166 EPt~~LD~~~~ 176 (501)
T PRK11288 166 EPTSSLSAREI 176 (501)
T ss_pred CCCCCCCHHHH
Confidence 99999999764
No 183
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-35 Score=240.46 Aligned_cols=152 Identities=14% Similarity=0.108 Sum_probs=129.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+++||+|.+|| +.+|+|+||+||| ||++.+.|+.+ |++|+|.++|.++.. ...+++
T Consensus 52 ~~il~~is~~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~ 120 (285)
T PRK14254 52 EQALDDVSMDIPENQ----VTAMIGPSGCGKS-------TFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRR 120 (285)
T ss_pred EeeEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhc
Confidence 469999999999999 8889999999999 99999999976 689999999987642 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
+++|+||++.+++. |+.||+.+.....+.+ .+..+++.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 121 ~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~ 198 (285)
T PRK14254 121 RIGMVFQKPNPFPK-SIYDNVAYGLKIQGYD-GDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPD 198 (285)
T ss_pred cEEEEecCCccCcC-CHHHHHHHHHHHcCCc-HHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 89999999888775 9999998765443332 23455788899999984 456889999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 199 p~lLLLDEPts~LD~~~~ 216 (285)
T PRK14254 199 PEVILMDEPASALDPVAT 216 (285)
T ss_pred CCEEEEeCCCCCCCHHHH
Confidence 999999999999999754
No 184
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.6e-35 Score=286.09 Aligned_cols=155 Identities=29% Similarity=0.470 Sum_probs=140.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~ 91 (178)
.+|++||||+|++|| +.+|+|+||+||| |+++.+.|+.+|++|+|.++|.++.. ..+.++.||||||+
T Consensus 1952 ~~aL~~ISf~I~~GE----i~gLLG~NGAGKT-------TLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~ 2020 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGE----CFGLLGVNGAGKT-------TTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQF 2020 (2272)
T ss_pred ceEEEeeEEEEcCCc----EEEEECCCCCcHH-------HHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEecc
Confidence 469999999999999 7779999999999 99999999999999999999998753 44567789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+|++|++.++...++.+.++.++.++++++.++|.+..++++++|||||||||+||+||+++|++++|||||+|
T Consensus 2021 ~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsG 2100 (2272)
T TIGR01257 2021 DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTG 2100 (2272)
T ss_pred ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 99999999999999988777765555566788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 172 QNLYNTT 178 (178)
Q Consensus 172 LD~~~~~ 178 (178)
|||.+++
T Consensus 2101 LDp~sr~ 2107 (2272)
T TIGR01257 2101 MDPQARR 2107 (2272)
T ss_pred CCHHHHH
Confidence 9998753
No 185
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.3e-35 Score=259.54 Aligned_cols=150 Identities=18% Similarity=0.096 Sum_probs=131.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh-ccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY-LSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~-~~~ig~v~ 89 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++... .+. +++++|+|
T Consensus 24 ~~il~~vsl~i~~Ge----~~~liG~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 92 (510)
T PRK15439 24 VEVLKGIDFTLHAGE----VHALLGGNGAGKS-------TLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVP 92 (510)
T ss_pred ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 469999999999999 7889999999999 999999999999999999999877532 222 35799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|++.+++.+||.||+.+... ...+.++++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 93 q~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 93 QEPLLFPNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred ccCccCCCCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 99999999999999976421 11234567889999999998899999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 169 ~~LD~~~~ 176 (510)
T PRK15439 169 ASLTPAET 176 (510)
T ss_pred CCCCHHHH
Confidence 99999764
No 186
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-35 Score=258.20 Aligned_cols=154 Identities=12% Similarity=0.024 Sum_probs=130.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--Cccccccccc-------------------
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLL------------------- 71 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~------------------- 71 (178)
.++|++|||+|+.|| +.+|+|+|||||| ||++.+.|+. +|++|+|.++
T Consensus 13 ~~~l~~is~~i~~Ge----~~~iiG~nGsGKS-------TLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 13 KEVLKNISFTIEEGE----VLGILGRSGAGKS-------VLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred eEeeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhcccCCCCceEEEEeccccccccccccccccccc
Confidence 479999999999999 8889999999999 9999999996 7999999886
Q ss_pred ----ccccc-------c-----HHhhccceEEecCC-CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc
Q psy860 72 ----MTNIM-------H-----LFQYLSGIGYCPQF-NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY 134 (178)
Q Consensus 72 ----g~~~~-------~-----~~~~~~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~ 134 (178)
|.++. . ...+++.++|+||+ +.+++.+|+.|++.+.....+.+..+.++++.++++.+++.+.
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 161 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR 161 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence 22220 0 12346679999997 6788889999999876544443333445678899999999988
Q ss_pred ccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 135 RHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 135 ~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 162 ~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~ 204 (520)
T TIGR03269 162 ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTA 204 (520)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHH
Confidence 8999999999999999999999999999999999999999764
No 187
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2.7e-35 Score=236.65 Aligned_cols=152 Identities=17% Similarity=0.100 Sum_probs=127.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc----ccccccccccccccHHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF----QAAQNSLLMTNIMHLFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~----~~g~i~~~g~~~~~~~~~~~~ig~v 88 (178)
.++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|++.++|.++......++.++|+
T Consensus 16 ~~il~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v 84 (254)
T PRK10418 16 QPLVHGVSLTLQRGR----VLALVGGSGSGKS-------LTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATI 84 (254)
T ss_pred cceecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEE
Confidence 368999999999999 8889999999999 999999999998 9999999998875332234579999
Q ss_pred cCCCC--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 89 PQFNG--INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 89 ~Q~~~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
||++. +.+..|+.+++.+.....+.. ...+++.++++.+++.+ ..++.+.+|||||||||+|||||+.+|++|
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 85 MQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred ecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 99974 445678988876644333322 23467889999999976 568999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 163 lLDEPt~~LD~~~~ 176 (254)
T PRK10418 163 IADEPTTDLDVVAQ 176 (254)
T ss_pred EEeCCCcccCHHHH
Confidence 99999999998754
No 188
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.4e-35 Score=243.35 Aligned_cols=136 Identities=21% Similarity=0.201 Sum_probs=119.6
Q ss_pred hhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCC
Q psy860 35 LRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIP 114 (178)
Q Consensus 35 i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~ 114 (178)
|+|+||+||| ||++++.|+.+|++|+|.++|+++......++.++|+||++.+++++|+.||+.+.....+..
T Consensus 1 l~G~nGsGKS-------TLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~ 73 (325)
T TIGR01187 1 LLGPSGCGKT-------TLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVP 73 (325)
T ss_pred CcCCCCCCHH-------HHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCC
Confidence 5799999999 999999999999999999999987654444668999999999999999999999875544433
Q ss_pred CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 115 GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 115 ~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+.++
T Consensus 74 ~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~ 136 (325)
T TIGR01187 74 RAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136 (325)
T ss_pred HHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHH
Confidence 333455788999999999999999999999999999999999999999999999999998754
No 189
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.5e-35 Score=284.71 Aligned_cols=154 Identities=24% Similarity=0.312 Sum_probs=140.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~Q~ 91 (178)
.++++||||++++|| +.+|+|+||+||| |+++.+.|+.+|++|++.++|.++.. ..++|+.+|||||+
T Consensus 943 k~aL~~lsl~I~~Ge----i~aLLG~NGAGKS-------TLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~ 1011 (2272)
T TIGR01257 943 RPAVDRLNITFYENQ----ITAFLGHNGAGKT-------TTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQH 1011 (2272)
T ss_pred ceEEEeeEEEEcCCc----EEEEECCCCChHH-------HHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecC
Confidence 579999999999999 7889999999999 99999999999999999999998753 44567889999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+||+||+.++.+.++.+..+.+++++++++.++|.+..++++.+|||||||||+||+||+.+|++++|||||+|
T Consensus 1012 ~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSG 1091 (2272)
T TIGR01257 1012 NILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091 (2272)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 99999999999999987776655445566789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
|||.++
T Consensus 1092 LDp~sr 1097 (2272)
T TIGR01257 1092 VDPYSR 1097 (2272)
T ss_pred CCHHHH
Confidence 999865
No 190
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-35 Score=257.95 Aligned_cols=153 Identities=16% Similarity=0.174 Sum_probs=129.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEecC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCPQ 90 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~Q 90 (178)
.+|+||||+|+.|| +.+|+|+||+||| ||++++.|+.+|++|+|+++|+++.. ....+++++|+||
T Consensus 277 ~~l~~isl~i~~Ge----~~~l~G~NGsGKS-------TLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q 345 (510)
T PRK09700 277 KKVRDISFSVCRGE----ILGFAGLVGSGRT-------ELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE 345 (510)
T ss_pred CcccceeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccC
Confidence 48999999999999 7889999999999 99999999999999999999987643 2245668999999
Q ss_pred C---CCCCCCCCHHHHHHHHHHhc--------CC-CCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHh
Q psy860 91 F---NGINEHLTAQEMLECFSALR--------GI-PGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 91 ~---~~l~~~ltv~e~l~~~~~~~--------~~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
+ ..+++++|+.||+.+..... +. .....++++.++++.+++. +..++++.+|||||||||+|||||+
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence 8 46888999999997642210 11 1112234678899999997 7889999999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|++|||||||+|||+.++
T Consensus 426 ~~p~lLlLDEPt~~LD~~~~ 445 (510)
T PRK09700 426 CCPEVIIFDEPTRGIDVGAK 445 (510)
T ss_pred cCCCEEEECCCCCCcCHHHH
Confidence 99999999999999999764
No 191
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.1e-35 Score=258.58 Aligned_cols=153 Identities=13% Similarity=0.098 Sum_probs=128.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccc-ccc---ccc-----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLL-MTN---IMH-----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~-g~~---~~~-----~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++ |.+ +.. ....++
T Consensus 297 ~~il~~is~~i~~Ge----~~~l~G~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~ 365 (520)
T TIGR03269 297 VKAVDNVSLEVKEGE----IFGIVGTSGAGKT-------TLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKR 365 (520)
T ss_pred ceEEeeEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhh
Confidence 469999999999999 8889999999999 99999999999999999995 542 221 123456
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----cccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----YRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++.+|+.|++.+.... ..+..+.++++.++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 366 ~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 444 (520)
T TIGR03269 366 YIGILHQEYDLYPHRTVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIK 444 (520)
T ss_pred hEEEEccCcccCCCCcHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 799999999899999999999875322 2222223456788999999974 5789999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++|||||||+|||+.++
T Consensus 445 ~p~lLllDEPt~~LD~~~~ 463 (520)
T TIGR03269 445 EPRIVILDEPTGTMDPITK 463 (520)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999999764
No 192
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.2e-35 Score=232.04 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=124.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++.. ...+++.++|+||
T Consensus 17 ~~~l~~i~~~i~~G~----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (220)
T cd03245 17 IPALDNVSLTIRAGE----KVAIIGRVGSGKS-------TLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQ 85 (220)
T ss_pred cccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCC
Confidence 469999999999999 8889999999999 99999999999999999999987643 2345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcC-----------CCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS-----------GRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .|+.||+.+... ....+.+.++++.+++.+..++.+ .+|||||||||+|||||+.+
T Consensus 86 ~~~~~~-~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 86 DVTLFY-GTLRDNITLGAP------LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred CCcccc-chHHHHhhcCCC------CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 998776 699999865311 112345677888888877666654 69999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++||||||+|||+.++
T Consensus 159 p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 159 PPILLLDEPTSAMDMNSE 176 (220)
T ss_pred CCEEEEeCccccCCHHHH
Confidence 999999999999999764
No 193
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-35 Score=234.75 Aligned_cols=153 Identities=18% Similarity=0.114 Sum_probs=127.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--Cc---cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PF---QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~---~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++++++||+|++|| +.+|+|+||+||| ||++.+.|+. .| ++|+|.++|.++.. ...+++
T Consensus 18 ~~~l~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 86 (252)
T PRK14239 18 KKALNSVSLDFYPNE----ITALIGPSGSGKS-------TLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRK 86 (252)
T ss_pred eeeeeeeeEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhh
Confidence 469999999999999 8889999999999 9999999984 36 59999999987742 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|+.||+.+.....+.... ...+.+.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 87 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14239 87 EIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLAT 165 (252)
T ss_pred cEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhc
Confidence 8999999998876 8999999876444333222 2345677889999874 45688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 166 ~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14239 166 SPKIILLDEPTSALDPISA 184 (252)
T ss_pred CCCEEEEcCCccccCHHHH
Confidence 9999999999999998754
No 194
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-35 Score=234.51 Aligned_cols=153 Identities=16% Similarity=0.099 Sum_probs=127.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc---CCc--cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF---SPF--QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~---~~~--~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|++|||+|..|| +.+|+|+||+||| ||++.+.|+ .+| ++|++.++|.++.. ...+++
T Consensus 16 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14245 16 FHALKGISMEIEEKS----VVAFIGPSGCGKS-------TFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRK 84 (250)
T ss_pred EeEEeeeeEEEeCCC----EEEEECCCCCCHH-------HHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhh
Confidence 469999999999999 7889999999999 999999886 354 58999999988753 245667
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++ .|+.||+.+.....+... .+..+.+.++++.+++.+ ..++++.+|||||||||+|||||+.
T Consensus 85 ~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14245 85 NVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV 163 (250)
T ss_pred heEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 8999999988876 699999987544433221 123456788899999853 5688899999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 164 ~p~lllLDEPt~~LD~~~~ 182 (250)
T PRK14245 164 SPSVLLMDEPASALDPIST 182 (250)
T ss_pred CCCEEEEeCCCccCCHHHH
Confidence 9999999999999999764
No 195
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2.6e-35 Score=258.33 Aligned_cols=152 Identities=20% Similarity=0.209 Sum_probs=127.2
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-Hhhc
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYL 82 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~ 82 (178)
|.|+++ .++|+|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+. .++|
T Consensus 342 f~Y~~~---~~vL~~isl~i~~G~----~vaIvG~SGsGKS-------TLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr 407 (529)
T TIGR02868 342 FGYPGS---PPVLDGVSLDLPPGE----RVAILGPSGSGKS-------TLLMLLTGLLDPLQGEVTLDGVSVSSLQDELR 407 (529)
T ss_pred EecCCC---CceeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEhhhHHHHHH
Confidence 567543 269999999999999 8889999999999 999999999999999999999988765 4578
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cCc----CCCCChHHHHHHH
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HRV----SGRYSGGNKRKLS 151 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~LSgGqkQRv~ 151 (178)
+.|+||||++.+|.. |++||+.++. + ....+++.++++..++.+.. |.. -..||||||||++
T Consensus 408 ~~i~~V~Q~~~lF~~-TI~eNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRia 480 (529)
T TIGR02868 408 RRISVFAQDAHLFDT-TVRDNLRLGR-----P-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLA 480 (529)
T ss_pred hheEEEccCcccccc-cHHHHHhccC-----C-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHH
Confidence 899999999998754 9999998741 1 22345677888887775432 333 3469999999999
Q ss_pred HHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 152 TAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 152 IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
|||||+.+|++++||||||+||+.+
T Consensus 481 iARall~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 481 LARALLADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHH
Confidence 9999999999999999999999875
No 196
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=3.7e-35 Score=236.31 Aligned_cols=154 Identities=14% Similarity=0.139 Sum_probs=128.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc-----cccH--Hh----h
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN-----IMHL--FQ----Y 81 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~-----~~~~--~~----~ 81 (178)
.++|+++||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.+ +... .+ .
T Consensus 19 ~~il~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~ 87 (258)
T PRK11701 19 RKGCRDVSFDLYPGE----VLGIVGESGSGKT-------TLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLL 87 (258)
T ss_pred ceeeeeeeEEEeCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHh
Confidence 469999999999999 8889999999999 99999999999999999999987 5432 11 2
Q ss_pred ccceEEecCCCC--CCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHh
Q psy860 82 LSGIGYCPQFNG--INEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 82 ~~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
++.++|+||++. +++.+|+.+++.+....... ...+..+.+.++++.+++. ...++.+.+|||||||||+|||||+
T Consensus 88 ~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~ 167 (258)
T PRK11701 88 RTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLV 167 (258)
T ss_pred hcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHh
Confidence 557999999973 67778999998754322221 1123355678899999997 4788999999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|++|||||||+|||+.++
T Consensus 168 ~~p~llllDEPt~~LD~~~~ 187 (258)
T PRK11701 168 THPRLVFMDEPTGGLDVSVQ 187 (258)
T ss_pred cCCCEEEEcCCcccCCHHHH
Confidence 99999999999999998754
No 197
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-35 Score=234.63 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=128.6
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhc
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYL 82 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~ 82 (178)
.+++|+++||+|.+|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|.++.. ...++
T Consensus 16 ~~~~l~~~sl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~ 84 (251)
T PRK14251 16 NYEALHGISLDFEEKE----LTALIGPSGCGKS-------TFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELR 84 (251)
T ss_pred CeeeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhh
Confidence 3579999999999999 8889999999999 99999999986 489999999987642 23456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHh
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
+.++|++|++.+++ .|++||+.+.....+... ....+.+.++++.+++. ...++.+.+||||||||++|||||+
T Consensus 85 ~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 85 KEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred ccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 78999999998875 799999987543333221 12335677889999984 4568899999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|+++||||||+|||+.++
T Consensus 164 ~~p~llllDEP~~~LD~~~~ 183 (251)
T PRK14251 164 VRPKVVLLDEPTSALDPISS 183 (251)
T ss_pred cCCCEEEecCCCccCCHHHH
Confidence 99999999999999999764
No 198
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-35 Score=233.85 Aligned_cols=154 Identities=16% Similarity=0.095 Sum_probs=127.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-----ccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-----AAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-----~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++++||||+|++|| +.+|+|+||+||| ||++.+.|+.+|+ +|+|.++|.++.. ...+++
T Consensus 17 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T PRK14272 17 KQAVKNVNLDVQRGT----VNALIGPSGCGKT-------TFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRR 85 (252)
T ss_pred EEeeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhc
Confidence 479999999999999 8889999999999 9999999998764 8999999988753 235567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++.+|+.||+.+.....+... .+..+.+.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 86 ~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 165 (252)
T PRK14272 86 RVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAV 165 (252)
T ss_pred eeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 89999999999999999999986543332211 12334566677777653 45688899999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 166 ~p~llllDEP~~~LD~~~~ 184 (252)
T PRK14272 166 EPEILLMDEPTSALDPAST 184 (252)
T ss_pred CCCEEEEeCCCccCCHHHH
Confidence 9999999999999999764
No 199
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.2e-35 Score=257.99 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=129.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----ccccccccccccccH-----Hhhc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMHL-----FQYL 82 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~~-----~~~~ 82 (178)
.++|++|||+|+.|| +.+|+|+|||||| ||++.++|+.+| ++|++.++|.++... ...+
T Consensus 22 ~~~l~~isl~i~~Ge----~~~iiG~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 90 (529)
T PRK15134 22 RTVVNDVSLQIEAGE----TLALVGESGSGKS-------VTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVR 90 (529)
T ss_pred eeeeeceEEEEeCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHh
Confidence 479999999999999 8889999999999 999999999886 799999999987542 1233
Q ss_pred -cceEEecCCCC--CCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHHHHHHHHH
Q psy860 83 -SGIGYCPQFNG--INEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKRKLSTAMA 155 (178)
Q Consensus 83 -~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQRv~IAra 155 (178)
+++||+||++. +++.+++.+++.+.... .+.+..+..+++.++++.+++.+ ..++++.+|||||||||+||||
T Consensus 91 ~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAra 170 (529)
T PRK15134 91 GNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMA 170 (529)
T ss_pred cCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHH
Confidence 57999999974 66778999998764332 23333344567889999999975 4689999999999999999999
Q ss_pred HhCCCCeEEeeCCCCCCCCCCC
Q psy860 156 LIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 156 L~~~P~~lllDEPt~gLD~~~~ 177 (178)
|+++|++|||||||++||+.++
T Consensus 171 L~~~p~llllDEPt~~LD~~~~ 192 (529)
T PRK15134 171 LLTRPELLIADEPTTALDVSVQ 192 (529)
T ss_pred HhcCCCEEEEcCCCCccCHHHH
Confidence 9999999999999999999764
No 200
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-35 Score=233.26 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=128.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-----ccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-----AAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-----~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+++||+|.+|| +.+|+|+||+||| ||++.+.|+.+|+ +|++.++|.++.. ...+++
T Consensus 17 ~~il~~~s~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~ 85 (251)
T PRK14249 17 HQVLKNINMDFPERQ----ITAIIGPSGCGKS-------TLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRK 85 (251)
T ss_pred eeEecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhc
Confidence 469999999999999 7889999999999 9999999999887 6999999987643 235577
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++. |+.||+.+.....+... .+..+.+.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 86 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 164 (251)
T PRK14249 86 RVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAI 164 (251)
T ss_pred eEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 89999999988874 99999987654333221 22345567778888874 45788999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 165 ~p~lllLDEPt~~LD~~~~ 183 (251)
T PRK14249 165 EPEVILMDEPCSALDPVST 183 (251)
T ss_pred CCCEEEEeCCCccCCHHHH
Confidence 9999999999999998754
No 201
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-35 Score=235.10 Aligned_cols=153 Identities=17% Similarity=0.136 Sum_probs=127.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----cccccccccccccccH----Hhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMHL----FQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~~----~~~~~ 83 (178)
.++|+++||+|.+|| +.+|+|+||+||| ||++.+.|+.+ |++|+|.++|.++... ..+++
T Consensus 18 ~~~l~~is~~i~~Ge----~~~I~G~nGsGKS-------TLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 86 (251)
T PRK14244 18 KQILFDINLDIYKRE----VTAFIGPSGCGKS-------TFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA 86 (251)
T ss_pred eeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence 479999999999999 7889999999999 99999999975 5799999999876432 24567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC--CCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHh
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP--GVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
+++|+||++.+++. |+.+|+.+........ ..+..+.+.++++.+++.+ ..++.+.+|||||||||+|||||+
T Consensus 87 ~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~ 165 (251)
T PRK14244 87 KVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIA 165 (251)
T ss_pred hEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHh
Confidence 89999999988875 9999998754333221 1123456778899999964 457889999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|+++||||||+|||+.++
T Consensus 166 ~~p~llllDEPt~~LD~~~~ 185 (251)
T PRK14244 166 VKPTMLLMDEPCSALDPVAT 185 (251)
T ss_pred cCCCEEEEeCCCccCCHHHH
Confidence 99999999999999999754
No 202
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.5e-35 Score=226.87 Aligned_cols=145 Identities=14% Similarity=0.094 Sum_probs=126.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
.++ +|||+|++|| ..+|+|+||+||| ||++++.|+.+|++|++.++|.++.... ++.++|++|++.
T Consensus 15 ~l~-~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~i~~~~--~~~~~~~~~~~~ 80 (195)
T PRK13541 15 NLF-DLSITFLPSA----ITYIKGANGCGKS-------SLLRMIAGIMQPSSGNIYYKNCNINNIA--KPYCTYIGHNLG 80 (195)
T ss_pred EEE-EEEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCcccChhh--hhhEEeccCCcC
Confidence 455 4999999999 7889999999999 9999999999999999999998875542 346999999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN 173 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD 173 (178)
+++..|+.||+.+...... ..+++.++++.+++.+..++.+.+||+|||||++||||++.+|++++|||||+|||
T Consensus 81 ~~~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD 155 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLS 155 (195)
T ss_pred CCccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 8889999999987543321 24467888999999888899999999999999999999999999999999999999
Q ss_pred CCCC
Q psy860 174 LYNT 177 (178)
Q Consensus 174 ~~~~ 177 (178)
+.++
T Consensus 156 ~~~~ 159 (195)
T PRK13541 156 KENR 159 (195)
T ss_pred HHHH
Confidence 8764
No 203
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-35 Score=236.25 Aligned_cols=153 Identities=17% Similarity=0.108 Sum_probs=126.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|.++.. ...+++
T Consensus 34 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 102 (268)
T PRK14248 34 KRAVNDISMDIEKHA----VTALIGPSGCGKS-------TFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRR 102 (268)
T ss_pred ceeeeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhc
Confidence 469999999999999 8889999999999 99999999754 799999999988743 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++. |+.||+.+......... ....+.+.++++.+++. +..++++.+||||||||++|||||+.
T Consensus 103 ~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~ 181 (268)
T PRK14248 103 EIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAM 181 (268)
T ss_pred cEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhC
Confidence 89999999988775 99999987543322211 12234577788888884 45688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 182 ~p~lllLDEPt~~LD~~~~ 200 (268)
T PRK14248 182 KPAVLLLDEPASALDPISN 200 (268)
T ss_pred CCCEEEEcCCCcccCHHHH
Confidence 9999999999999999764
No 204
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.1e-35 Score=256.68 Aligned_cols=153 Identities=19% Similarity=0.150 Sum_probs=130.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++|++|||+|+.|| +.+|+|+||+||| ||++++.|+.+ ++|+|+++|+++... ..++++++|
T Consensus 299 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~ 366 (529)
T PRK15134 299 NVVVKNISFTLRPGE----TLGLVGESGSGKS-------TTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQV 366 (529)
T ss_pred ceeeecceeEEcCCC----EEEEECCCCCCHH-------HHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEE
Confidence 469999999999999 8889999999999 99999999985 899999999877532 224567999
Q ss_pred ecCCC--CCCCCCCHHHHHHHHHHhcC--CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 88 CPQFN--GINEHLTAQEMLECFSALRG--IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 88 v~Q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
+||++ .+++.+||.||+.+...... ....+.++++.++++.+++. +..++++.+|||||||||+|||||+.+|++
T Consensus 367 v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 446 (529)
T PRK15134 367 VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSL 446 (529)
T ss_pred EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCE
Confidence 99997 48888999999987543321 22233446788999999997 578999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
|||||||+|||+.++
T Consensus 447 lllDEPt~~LD~~~~ 461 (529)
T PRK15134 447 IILDEPTSSLDKTVQ 461 (529)
T ss_pred EEeeCCccccCHHHH
Confidence 999999999999764
No 205
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.3e-35 Score=238.97 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=127.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|.+|| +.+|+|+||+||| ||++.+.|+.+ |++|+|.++|.++.. ...+++
T Consensus 52 ~~il~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~ 120 (286)
T PRK14275 52 FEAVKKVNADILSKY----VTAIIGPSGCGKS-------TFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRK 120 (286)
T ss_pred EEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhh
Confidence 469999999999999 7889999999999 99999999853 499999999987643 124567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++. |+.||+.+.....+... ...++++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 121 ~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 199 (286)
T PRK14275 121 KIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAV 199 (286)
T ss_pred cEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 89999999988874 99999987654433321 22345677888888873 56688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++|||||||+|||+.++
T Consensus 200 ~p~lllLDEPt~gLD~~~~ 218 (286)
T PRK14275 200 EPEILLLDEPTSALDPKAT 218 (286)
T ss_pred CCCEEEEeCCCccCCHHHH
Confidence 9999999999999998754
No 206
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-35 Score=236.02 Aligned_cols=143 Identities=22% Similarity=0.208 Sum_probs=126.1
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------HhhccceEEecCC
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQYLSGIGYCPQF 91 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~~~~ig~v~Q~ 91 (178)
++||..+... ..||+|++|+||| |+++++.|+.+|+.|.|.++|+...+. ...+++||||||+
T Consensus 16 ~a~~~~p~~G----vTAlFG~SGsGKT-------slin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQD 84 (352)
T COG4148 16 DANFTLPARG----ITALFGPSGSGKT-------SLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQD 84 (352)
T ss_pred EEeccCCCCc----eEEEecCCCCChh-------hHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeec
Confidence 5788888855 7889999999999 999999999999999999999976542 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
..+||++||+.|+.|..... .....+++.+.+|+.+..+++|.+|||||||||+|+|||.+.|++|++|||.|+
T Consensus 85 ARLFpH~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaS 158 (352)
T COG4148 85 ARLFPHYTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLAS 158 (352)
T ss_pred cccccceEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhh
Confidence 99999999999998753221 345678889999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||...+
T Consensus 159 LD~~RK 164 (352)
T COG4148 159 LDLPRK 164 (352)
T ss_pred cccchh
Confidence 997643
No 207
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-35 Score=236.21 Aligned_cols=153 Identities=19% Similarity=0.153 Sum_probs=128.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||++.+|| +.+|+|+||+||| ||++.+.|+.+ |++|+|.++|.++.. ...+++
T Consensus 33 ~~il~~vsl~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 101 (267)
T PRK14237 33 KEAIKGIDMQFEKNK----ITALIGPSGSGKS-------TYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRK 101 (267)
T ss_pred eeeEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhc
Confidence 579999999999999 8889999999999 99999999975 589999999988742 234577
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|+.||+.+.....+.. ..+..+++.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 102 ~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~ 180 (267)
T PRK14237 102 HIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAV 180 (267)
T ss_pred ceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 8999999988876 69999998754333321 122345677889999884 45788999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 181 ~p~lllLDEPt~~LD~~~~ 199 (267)
T PRK14237 181 KPDILLMDEPASALDPIST 199 (267)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999998754
No 208
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-35 Score=237.32 Aligned_cols=154 Identities=16% Similarity=0.061 Sum_probs=130.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc--------ccccccccccccc--HHhhc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ--------AAQNSLLMTNIMH--LFQYL 82 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~--------~g~i~~~g~~~~~--~~~~~ 82 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|+ +|++.++|.++.. ..+.+
T Consensus 14 ~~il~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (272)
T PRK13547 14 RAILRDLSLRIEPGR----VTALLGRNGAGKS-------TLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLA 82 (272)
T ss_pred EeEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHH
Confidence 479999999999999 7889999999999 9999999999998 8999999988754 33456
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhc----CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh-
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALR----GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI- 157 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~- 157 (178)
+.++|+||++.+++.+|+.||+.+..... +....+..+++.++++.+++.+..++++.+|||||||||+|||||+
T Consensus 83 ~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~ 162 (272)
T PRK13547 83 RLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQ 162 (272)
T ss_pred hhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 67999999987667799999997642111 1111223456788999999998889999999999999999999999
Q ss_pred --------CCCCeEEeeCCCCCCCCCCC
Q psy860 158 --------GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 --------~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|++|||||||+|||+.++
T Consensus 163 ~~~~~~~~~~p~lllLDEPt~~LD~~~~ 190 (272)
T PRK13547 163 LWPPHDAAQPPRYLLLDEPTAALDLAHQ 190 (272)
T ss_pred cccccccCCCCCEEEEcCccccCCHHHH
Confidence 59999999999999999764
No 209
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.2e-35 Score=255.02 Aligned_cols=154 Identities=18% Similarity=0.092 Sum_probs=129.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--ccccccccccccccH--H-hhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--QAAQNSLLMTNIMHL--F-QYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--~~g~i~~~g~~~~~~--~-~~~~~ig~ 87 (178)
.++|++|||++++|| +.+|+|+||+||| ||++++.|+.+| ++|+|.++|.++... . ..+++++|
T Consensus 14 ~~il~~isl~i~~Ge----~~~liG~nGsGKS-------TLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (500)
T TIGR02633 14 VKALDGIDLEVRPGE----CVGLCGENGAGKS-------TLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVI 82 (500)
T ss_pred eEeecceEEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEE
Confidence 469999999999999 8889999999999 999999999886 799999999887542 2 23567999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhc--C--CCCCChhHHHHHHHHHcCCCccc-cCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 88 CPQFNGINEHLTAQEMLECFSALR--G--IPGVKSGPIIDYWIDLLGLTEYR-HRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~--~--~~~~~~~~~~~~~l~~~~L~~~~-~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
+||++.+++.+|+.||+.+..... . ....+..+++.++++.+++.+.. ++++.+|||||||||+|||||+.+|++
T Consensus 83 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~l 162 (500)
T TIGR02633 83 IHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARL 162 (500)
T ss_pred EeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999998753221 1 11223345688899999998654 678999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
|||||||+|||+.++
T Consensus 163 llLDEPt~~LD~~~~ 177 (500)
T TIGR02633 163 LILDEPSSSLTEKET 177 (500)
T ss_pred EEEeCCCCCCCHHHH
Confidence 999999999999764
No 210
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.1e-35 Score=234.53 Aligned_cols=153 Identities=17% Similarity=0.170 Sum_probs=128.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|++.++|.++.. ...+++
T Consensus 20 ~~il~~isl~i~~Ge----~~~l~G~nGsGKS-------TLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (259)
T PRK14260 20 SKAIEGISMDIYRNK----VTAIIGPSGCGKS-------TFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRR 88 (259)
T ss_pred eEeecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhh
Confidence 469999999999999 8889999999999 999999999875 48999999987743 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++ .|++||+.+.....+ .+..+..+.+.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 89 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 167 (259)
T PRK14260 89 QIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAI 167 (259)
T ss_pred heEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 8999999998887 899999987543332 12223345677889999883 46788999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 168 ~p~lllLDEPt~~LD~~~~ 186 (259)
T PRK14260 168 KPKVLLMDEPCSALDPIAT 186 (259)
T ss_pred CCCEEEEcCCCccCCHHHH
Confidence 9999999999999998754
No 211
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-35 Score=235.10 Aligned_cols=152 Identities=13% Similarity=0.106 Sum_probs=126.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----cccccccccccccc----cHHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIM----HLFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~----~~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|.++. ...++++
T Consensus 23 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 91 (264)
T PRK14243 23 FLAVKNVWLDIPKNQ----ITAFIGPSGCGKS-------TILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRR 91 (264)
T ss_pred EEEeecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhh
Confidence 479999999999999 8889999999999 99999999865 48999999998764 2345677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
.++|+||++.+++ .|+.||+.+.....+.. .+..+++.++++.+++. +..++.+.+|||||||||+|||||+.+
T Consensus 92 ~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 169 (264)
T PRK14243 92 RIGMVFQKPNPFP-KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169 (264)
T ss_pred hEEEEccCCcccc-ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 8999999998877 59999998754333221 22345567778888874 356788999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 170 p~lllLDEPt~~LD~~~~ 187 (264)
T PRK14243 170 PEVILMDEPCSALDPIST 187 (264)
T ss_pred CCEEEEeCCCccCCHHHH
Confidence 999999999999999764
No 212
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=232.45 Aligned_cols=153 Identities=17% Similarity=0.176 Sum_probs=128.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.+++++|||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|++.++|.++.. ...+++
T Consensus 16 ~~~l~~i~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~ 84 (250)
T PRK14262 16 KKAVKNVTMKIFKNQ----ITAIIGPSGCGKT-------TLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRK 84 (250)
T ss_pred ceeEeeeeEeecCCC----EEEEECCCCCCHH-------HHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhh
Confidence 469999999999999 7889999999999 999999999763 89999999987753 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|++||+.+.....+... ....+.+.++++.+++.+ ..++.+.+||||||||++|||||+.
T Consensus 85 ~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~ 163 (250)
T PRK14262 85 KVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV 163 (250)
T ss_pred hEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC
Confidence 8999999998877 899999987544332221 123445778889999853 4788999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 164 ~p~llllDEP~~~LD~~~~ 182 (250)
T PRK14262 164 EPEVILLDEPTSALDPIAT 182 (250)
T ss_pred CCCEEEEeCCccccCHHHH
Confidence 9999999999999998764
No 213
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=7e-35 Score=233.70 Aligned_cols=151 Identities=14% Similarity=0.129 Sum_probs=128.5
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
.+|++|||+|++|| +.+|+|+||+||| ||++++.|+.+ .+|++.++|+++.. ..+.++.++|+||+
T Consensus 10 ~~l~~vsl~i~~Ge----i~~l~G~nGsGKS-------TLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 77 (248)
T PRK03695 10 TRLGPLSAEVRAGE----ILHLVGPNGAGKS-------TLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQ 77 (248)
T ss_pred ceecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEeccc
Confidence 38999999999999 7889999999999 99999999986 48999999988754 33455679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC-------CCCeEE
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG-------DRDDGF 164 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~-------~P~~ll 164 (178)
+.+++.+|+.+|+.++... .....+..+++.++++.+++.+..++++.+|||||||||+|||||+. +|+++|
T Consensus 78 ~~~~~~~tv~~nl~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll 156 (248)
T PRK03695 78 QTPPFAMPVFQYLTLHQPD-KTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL 156 (248)
T ss_pred CccCCCccHHHHHHhcCcc-CCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence 8888889999999875321 12222335578899999999988899999999999999999999997 779999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 157 lDEPt~~LD~~~~ 169 (248)
T PRK03695 157 LDEPMNSLDVAQQ 169 (248)
T ss_pred EcCCcccCCHHHH
Confidence 9999999999754
No 214
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=232.10 Aligned_cols=153 Identities=17% Similarity=0.136 Sum_probs=127.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----ccccccccccccc---cHHhhccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIM---HLFQYLSG 84 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~---~~~~~~~~ 84 (178)
.++|++|||+|.+|| ..+|+|+||+||| ||++.+.|+.+| ++|++.++|.++. ....+++.
T Consensus 16 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~ 84 (249)
T PRK14253 16 NQALKSINLPIPARQ----VTALIGPSGCGKS-------TLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIK 84 (249)
T ss_pred eeeeecceEEecCCC----EEEEECCCCCCHH-------HHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhh
Confidence 469999999999999 7889999999999 999999999875 5999999998764 23456778
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 85 IGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++|+||++.+++ .|+.||+.+.....+... ....+++.++++.+++. +..++.+.+|||||||||+|||||+.+
T Consensus 85 i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (249)
T PRK14253 85 VGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAME 163 (249)
T ss_pred eeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcC
Confidence 999999998887 899999987543332221 12234567788888874 456788999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++||||||+|||+.++
T Consensus 164 p~llllDEP~~~LD~~~~ 181 (249)
T PRK14253 164 PDVILMDEPTSALDPIAT 181 (249)
T ss_pred CCEEEEeCCCccCCHHHH
Confidence 999999999999999754
No 215
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=9.7e-35 Score=235.35 Aligned_cols=154 Identities=16% Similarity=0.088 Sum_probs=130.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig~ 87 (178)
.++++||||+|.+|| +.+|.|+||+||| ||++.+.|+.+|++|++.++|.++... ..+++.++|
T Consensus 25 ~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~ 93 (268)
T PRK10419 25 QTVLNNVSLSLKSGE----TVALLGRSGCGKS-------TLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQM 93 (268)
T ss_pred eeeEeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEE
Confidence 579999999999999 7889999999999 999999999999999999999877542 245678999
Q ss_pred ecCCC--CCCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 88 CPQFN--GINEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 88 v~Q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
+||++ .+++..|+.+++.+.... ......+..+.+.++++.+++. ...++.+.+||||||||++|||||+.+|++|
T Consensus 94 v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~ll 173 (268)
T PRK10419 94 VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLL 173 (268)
T ss_pred EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEE
Confidence 99997 466788999998764322 2222223345688999999997 5789999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 174 lLDEPt~~LD~~~~ 187 (268)
T PRK10419 174 ILDEAVSNLDLVLQ 187 (268)
T ss_pred EEeCCCcccCHHHH
Confidence 99999999998653
No 216
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=232.96 Aligned_cols=157 Identities=17% Similarity=0.171 Sum_probs=130.1
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc------ccccc--HHhh
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM------TNIMH--LFQY 81 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g------~~~~~--~~~~ 81 (178)
+|..++|+||||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++| .++.. ..++
T Consensus 20 ~~~~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 20 INDKAILKDITIKIPNNS----IFGIMGPSGSGKS-------TLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred cCCceeEeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 355679999999999999 8889999999999 999999999999997776665 44332 2346
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL 156 (178)
++.++|+||++.+++.+|+.+|+.+.....+.. ..+.++++.++++.+++. +..++.+..||+|||||++|||||
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 168 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARAL 168 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHH
Confidence 778999999999999999999998764332221 223345678899999995 356789999999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCCCCC
Q psy860 157 IGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 157 ~~~P~~lllDEPt~gLD~~~~ 177 (178)
+.+|++++|||||+|||+.++
T Consensus 169 ~~~P~llllDEPt~~LD~~~~ 189 (257)
T PRK14246 169 ALKPKVLLMDEPTSMIDIVNS 189 (257)
T ss_pred HcCCCEEEEcCCCccCCHHHH
Confidence 999999999999999998754
No 217
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-34 Score=253.60 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=129.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-ccccccccccccccc---HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLLMTNIMH---LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~g~~~~~---~~~~~~~ig~v 88 (178)
.++|+||||+|+.|| +.+|+|+||+||| ||++.+.|+.+ |++|+|.++|+++.. ....+++++|+
T Consensus 275 ~~vl~~vsl~i~~Ge----~~~l~G~NGsGKS-------TLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 343 (506)
T PRK13549 275 IKRVDDVSFSLRRGE----ILGIAGLVGAGRT-------ELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMV 343 (506)
T ss_pred cccccceeeEEcCCc----EEEEeCCCCCCHH-------HHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEe
Confidence 469999999999999 8889999999999 99999999998 599999999987642 22345679999
Q ss_pred cCCC---CCCCCCCHHHHHHHHHH--hcC---CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 89 PQFN---GINEHLTAQEMLECFSA--LRG---IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 89 ~Q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
||++ .+++.+|+.||+.+... ... ....+.++++.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~ 423 (506)
T PRK13549 344 PEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLN 423 (506)
T ss_pred CcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhC
Confidence 9985 47888999999986421 211 11122345688999999996 578999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 424 p~lllLDEPt~~LD~~~~ 441 (506)
T PRK13549 424 PKILILDEPTRGIDVGAK 441 (506)
T ss_pred CCEEEEcCCCCCcCHhHH
Confidence 999999999999999764
No 218
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1e-34 Score=232.88 Aligned_cols=154 Identities=14% Similarity=0.151 Sum_probs=126.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc-----cccH--Hh----h
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN-----IMHL--FQ----Y 81 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~-----~~~~--~~----~ 81 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|.+ +... .+ .
T Consensus 16 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~ 84 (253)
T TIGR02323 16 GKGCRDVSFDLYPGE----VLGIVGESGSGKS-------TLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLM 84 (253)
T ss_pred ceEeecceEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhh
Confidence 468999999999999 8889999999999 99999999999999999999876 4321 11 2
Q ss_pred ccceEEecCCCC--CCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHh
Q psy860 82 LSGIGYCPQFNG--INEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 82 ~~~ig~v~Q~~~--l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
+++++|++|++. +++..++.+++.+...... ....+..+.+.++++.+++. ...++.+.+|||||||||+|||||+
T Consensus 85 ~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~ 164 (253)
T TIGR02323 85 RTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLV 164 (253)
T ss_pred hcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHh
Confidence 457999999974 4556788888865322111 11123346788899999997 5789999999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|++|+|||||+|||+.++
T Consensus 165 ~~p~vlllDEP~~~LD~~~~ 184 (253)
T TIGR02323 165 TRPRLVFMDEPTGGLDVSVQ 184 (253)
T ss_pred cCCCEEEEcCCCccCCHHHH
Confidence 99999999999999999764
No 219
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-35 Score=231.26 Aligned_cols=147 Identities=19% Similarity=0.071 Sum_probs=120.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++++++||++++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++.. ...+++.++|+||
T Consensus 16 ~~~l~~isl~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (229)
T cd03254 16 KPVLKDINFSIKPGE----TVAIVGPTGAGKT-------TLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQ 84 (229)
T ss_pred CccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecC
Confidence 369999999999999 7889999999999 99999999999999999999987754 3355678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-----------CCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-----------GLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++. |+.||+.++... ...+.+.++++.+ ++....++.+.+|||||||||+|||||+.+
T Consensus 85 ~~~~~~~-tv~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~ 157 (229)
T cd03254 85 DTFLFSG-TIMENIRLGRPN------ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRD 157 (229)
T ss_pred Cchhhhh-HHHHHHhccCCC------CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 9987775 999998764211 1122344444444 344445667899999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++||||||+|||+.++
T Consensus 158 p~llllDEP~~~LD~~~~ 175 (229)
T cd03254 158 PKILILDEATSNIDTETE 175 (229)
T ss_pred CCEEEEeCccccCCHHHH
Confidence 999999999999998754
No 220
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=8.4e-35 Score=253.71 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=129.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-cccccccccccccc---HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQNSLLMTNIMH---LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i~~~g~~~~~---~~~~~~~ig~v 88 (178)
.++|++|||+|+.|| +.+|+|+||+||| ||++.+.|+.+| ++|+|.++|+++.. ...++++++|+
T Consensus 273 ~~~l~~is~~i~~Ge----~~~l~G~NGsGKS-------TLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (500)
T TIGR02633 273 RKRVDDVSFSLRRGE----ILGVAGLVGAGRT-------ELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMV 341 (500)
T ss_pred ccccccceeEEeCCc----EEEEeCCCCCCHH-------HHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEc
Confidence 469999999999999 8889999999999 999999999985 89999999987742 23456789999
Q ss_pred cCCC---CCCCCCCHHHHHHHHHH--hcC---CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 89 PQFN---GINEHLTAQEMLECFSA--LRG---IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 89 ~Q~~---~l~~~ltv~e~l~~~~~--~~~---~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
||++ .+++++|+.+++.+... ... ....+.++++.++++.+++. ...++++.+|||||||||+|||||+.+
T Consensus 342 ~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~ 421 (500)
T TIGR02633 342 PEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTN 421 (500)
T ss_pred CcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhC
Confidence 9996 58889999999976431 111 11122345688999999997 468999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 422 p~lllLDEPt~~LD~~~~ 439 (500)
T TIGR02633 422 PRVLILDEPTRGVDVGAK 439 (500)
T ss_pred CCEEEEcCCCCCcCHhHH
Confidence 999999999999999764
No 221
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-35 Score=254.13 Aligned_cols=154 Identities=20% Similarity=0.128 Sum_probs=129.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~ 89 (178)
..+++||||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|+|+++|+++.. ....+++++|+|
T Consensus 266 ~~~l~~isl~i~~Ge----~~~iiG~NGsGKS-------TLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 334 (501)
T PRK11288 266 PGLREPISFSVRAGE----IVGLFGLVGAGRS-------ELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCP 334 (501)
T ss_pred CCcccceeEEEeCCc----EEEEEcCCCCCHH-------HHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcC
Confidence 458999999999999 8889999999999 99999999999999999999987642 233457899999
Q ss_pred CCC---CCCCCCCHHHHHHHHHHhc----C--CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 90 QFN---GINEHLTAQEMLECFSALR----G--IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 90 Q~~---~l~~~ltv~e~l~~~~~~~----~--~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
|++ .+++.+|+.|++.+..... + ....+.++.+.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 335 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~ 414 (501)
T PRK11288 335 EDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSED 414 (501)
T ss_pred cCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccC
Confidence 996 4888999999987632111 1 01112235678899999994 788999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 415 p~lllLDEPt~~LD~~~~ 432 (501)
T PRK11288 415 MKVILLDEPTRGIDVGAK 432 (501)
T ss_pred CCEEEEcCCCCCCCHhHH
Confidence 999999999999999764
No 222
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=232.16 Aligned_cols=153 Identities=18% Similarity=0.122 Sum_probs=127.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+ | ++|++.++|.++.. ..+.++
T Consensus 19 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 87 (253)
T PRK14261 19 KHALYDITISIPKNR----VTALIGPSGCGKS-------TLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRR 87 (253)
T ss_pred eeeeeeeEEEECCCc----EEEEECCCCCCHH-------HHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhc
Confidence 469999999999999 7889999999999 99999999864 3 48999999988753 245567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++. |++||+.+.....+.. ..+.++.+.++++.+++. +..++.+.+||+|||||++|||||+.
T Consensus 88 ~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~ 166 (253)
T PRK14261 88 KIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAV 166 (253)
T ss_pred eEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhc
Confidence 89999999988874 9999998765443321 122345677888888874 34688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 167 ~p~lllLDEP~~gLD~~~~ 185 (253)
T PRK14261 167 NPEVILMDEPCSALDPIAT 185 (253)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999999764
No 223
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=233.22 Aligned_cols=154 Identities=15% Similarity=0.089 Sum_probs=129.2
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhh
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQY 81 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~ 81 (178)
|..++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|+|.++|.++.. ...+
T Consensus 19 ~~~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 87 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNE----ITGFIGPSGCGKS-------TVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVV 87 (261)
T ss_pred CCEEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcccccccCCCCceEEEECCEeccccccchHhh
Confidence 33579999999999999 8889999999999 999999999876 79999999998743 2345
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHh
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
++.++|+||++.++ .+|+.||+.+........ .+..+.+.++++.+++.+ ..++++.+|||||+||++|||||+
T Consensus 88 ~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~ 165 (261)
T PRK14263 88 RRYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIA 165 (261)
T ss_pred hhceEEEecCCccc-cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 67899999999877 699999998765433221 233457888999999853 446788999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|+++||||||+|||+.++
T Consensus 166 ~~p~llllDEPtsgLD~~~~ 185 (261)
T PRK14263 166 TEPEVLLLDEPCSALDPIAT 185 (261)
T ss_pred cCCCEEEEeCCCccCCHHHH
Confidence 99999999999999999764
No 224
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=9.4e-35 Score=229.76 Aligned_cols=148 Identities=19% Similarity=0.126 Sum_probs=123.6
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEe
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v 88 (178)
++|..++|+|+||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++...
T Consensus 31 ~~~~~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 31 EVGEFWALKDVSFEVPRGE----RIGLIGRNGAGKS-------TLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hcCCeEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 3456789999999999999 7889999999999 999999999999999999998764211
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
.+...+++.+|+.||+.+.....+....+.++++.++++.+++.+..++.+.+|||||||||+|||||+.+|+++|||||
T Consensus 90 ~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 169 (224)
T cd03220 90 GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEV 169 (224)
T ss_pred cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 11234557789999998765443333233345678889999999888999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 170 ~~gLD~~~~ 178 (224)
T cd03220 170 LAVGDAAFQ 178 (224)
T ss_pred cccCCHHHH
Confidence 999999754
No 225
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-34 Score=235.27 Aligned_cols=153 Identities=15% Similarity=0.123 Sum_probs=127.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc---HHhhccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH---LFQYLSG 84 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~---~~~~~~~ 84 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|+|.++|.++.. ...++++
T Consensus 34 ~~il~~vs~~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 102 (276)
T PRK14271 34 KTVLDQVSMGFPARA----VTSLMGPTGSGKT-------TFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRR 102 (276)
T ss_pred EEEeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhh
Confidence 479999999999999 8889999999999 999999999875 79999999988753 2356778
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCCc----cccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 85 IGYCPQFNGINEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLTE----YRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~----~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++|+||++.+++ .|+.+|+.+...... ....+..+.+.++++.+++.+ ..++.+.+|||||||||+|||||+.+
T Consensus 103 i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~ 181 (276)
T PRK14271 103 VGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVN 181 (276)
T ss_pred eEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999998887 899999987543222 122223345677889999863 45788999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++||||||+|||+.++
T Consensus 182 p~lllLDEPt~~LD~~~~ 199 (276)
T PRK14271 182 PEVLLLDEPTSALDPTTT 199 (276)
T ss_pred CCEEEEcCCcccCCHHHH
Confidence 999999999999998764
No 226
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=230.73 Aligned_cols=153 Identities=18% Similarity=0.158 Sum_probs=126.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--c---cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--F---QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~---~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+++||+|.+|| +.+|+|+||+||| ||++.+.|+.+ | ++|+|.++|.++.. ...+++
T Consensus 18 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 86 (252)
T PRK14255 18 FEALKGIDLDFNQNE----ITALIGPSGCGKS-------TYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRK 86 (252)
T ss_pred eeEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcC
Confidence 469999999999999 8889999999999 99999999864 4 58999999987742 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|+.+|+.+.....+.... ...+.+.++++.+++. +..++.+.+||+||||||+|||||+.
T Consensus 87 ~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~ 165 (252)
T PRK14255 87 QVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAV 165 (252)
T ss_pred eEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhc
Confidence 8999999998887 6999999875443332221 1234566778888763 45688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 166 ~p~llllDEPt~~LD~~~~ 184 (252)
T PRK14255 166 KPDVILLDEPTSALDPISS 184 (252)
T ss_pred CCCEEEEcCCCccCCHHHH
Confidence 9999999999999999764
No 227
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=234.48 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=125.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+|+||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|+|.++|.++.. ...+++
T Consensus 37 ~~il~~vsl~i~~Ge----~~~I~G~nGsGKS-------TLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 105 (271)
T PRK14238 37 DHALKNINLDIHENE----VTAIIGPSGCGKS-------TYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRT 105 (271)
T ss_pred cceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhh
Confidence 469999999999999 8889999999999 99999999986 699999999987642 335567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcC----CCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLG----LTEYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~----L~~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|+.||+.+.......... ...+.+.++++.++ +.+..++++.+|||||||||+|||||+.
T Consensus 106 ~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~ 184 (271)
T PRK14238 106 NVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAI 184 (271)
T ss_pred hEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHc
Confidence 8999999998876 5999999875433322211 12344567777775 3456688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 185 ~p~lllLDEPt~~LD~~~~ 203 (271)
T PRK14238 185 EPDVILMDEPTSALDPIST 203 (271)
T ss_pred CCCEEEEeCCCCcCCHHHH
Confidence 9999999999999999764
No 228
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.2e-34 Score=252.95 Aligned_cols=153 Identities=17% Similarity=0.221 Sum_probs=129.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQ 90 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q 90 (178)
+++++|||+|+.|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|+++... ...+++++|+||
T Consensus 266 ~~l~~vsl~i~~Ge----~~~liG~NGsGKS-------TLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q 334 (501)
T PRK10762 266 PGVNDVSFTLRKGE----ILGVSGLMGAGRT-------ELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISE 334 (501)
T ss_pred CCcccceEEEcCCc----EEEEecCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecC
Confidence 46999999999999 7889999999999 999999999999999999999876432 234568999999
Q ss_pred CC---CCCCCCCHHHHHHHHHH--hc---C-CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 91 FN---GINEHLTAQEMLECFSA--LR---G-IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 91 ~~---~l~~~ltv~e~l~~~~~--~~---~-~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
++ .+++.+|+.+++.+... .. + ....+.++.+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 335 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p 414 (501)
T PRK10762 335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP 414 (501)
T ss_pred ccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 96 57889999999986421 11 1 11122345688999999995 6789999999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~~ 177 (178)
++|||||||+|||+.++
T Consensus 415 ~lllLDEPt~~LD~~~~ 431 (501)
T PRK10762 415 KVLILDEPTRGVDVGAK 431 (501)
T ss_pred CEEEEcCCCCCCCHhHH
Confidence 99999999999999764
No 229
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.4e-35 Score=234.40 Aligned_cols=151 Identities=15% Similarity=0.085 Sum_probs=120.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ...+++.++|+||
T Consensus 15 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 83 (237)
T cd03252 15 PVILDNISLRIKPGE----VVGIVGRSGSGKS-------TLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQ 83 (237)
T ss_pred ccceeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcC
Confidence 469999999999999 8889999999999 99999999999999999999987643 3345678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhH-----HHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGP-----IIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
++.++ +.|+.||+.+... .....+..+ .+.++++.+ ++....++++.+|||||||||+|||||+.+|+++
T Consensus 84 ~~~~~-~~tv~~nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (237)
T cd03252 84 ENVLF-NRSIRDNIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRIL 160 (237)
T ss_pred Cchhc-cchHHHHhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEE
Confidence 98776 4799999976321 111001011 112334444 4555567889999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 161 llDEP~~~LD~~~~ 174 (237)
T cd03252 161 IFDEATSALDYESE 174 (237)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999999764
No 230
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-35 Score=236.84 Aligned_cols=153 Identities=16% Similarity=0.242 Sum_probs=124.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..++.++|+||++
T Consensus 20 ~~il~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~-~~~~~i~~v~q~~ 87 (272)
T PRK15056 20 HTALRDASFTVPGGS----IAALVGVNGSGKS-------TLFKALMGFVRLASGKISILGQPTRQA-LQKNLVAYVPQSE 87 (272)
T ss_pred cEEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEhHHh-hccceEEEecccc
Confidence 469999999999999 7889999999999 999999999999999999999876421 1234699999997
Q ss_pred CCC--CCCCHHHHHHHHHH--hc--CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 93 GIN--EHLTAQEMLECFSA--LR--GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 93 ~l~--~~ltv~e~l~~~~~--~~--~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
.+. ...++.+++.+... .. ........+++.++++.+++.+..++++.+|||||||||+|||||+.+|++++||
T Consensus 88 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 88 EVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 653 23467777754211 00 1111223456788899999998889999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 168 EPt~~LD~~~~ 178 (272)
T PRK15056 168 EPFTGVDVKTE 178 (272)
T ss_pred CCCccCCHHHH
Confidence 99999999764
No 231
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-35 Score=227.19 Aligned_cols=161 Identities=18% Similarity=0.225 Sum_probs=147.5
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhhc
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYL 82 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~ 82 (178)
..++.+|.+.++++||++|++|. +++++||||+||| ||+..+.++.+.++|+++++|.++... .++.
T Consensus 6 nv~K~y~~~~vl~~isl~i~~g~----iTs~IGPNGAGKS-------TLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LA 74 (252)
T COG4604 6 NVSKSYGTKVVLDDVSLDIPKGG----ITSIIGPNGAGKS-------TLLSMMSRLLKKDSGEITIDGLELTSTPSKELA 74 (252)
T ss_pred hhhHhhCCEEeeccceeeecCCc----eeEEECCCCccHH-------HHHHHHHHhccccCceEEEeeeecccCChHHHH
Confidence 34567788899999999999999 7779999999999 999999999999999999999998763 5677
Q ss_pred cceEEecCCCCCCCCCCHHHHHHH--HHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLEC--FSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~--~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
+.++.+-|+..+...+||+|.+.| |++-.|....++++.++++++.++|.+..|++..+||||||||..||+.++++.
T Consensus 75 k~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdT 154 (252)
T COG4604 75 KKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDT 154 (252)
T ss_pred HHHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccC
Confidence 889999999999999999999988 455567777888999999999999999999999999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~ 176 (178)
++++||||.+.||.++
T Consensus 155 dyvlLDEPLNNLDmkH 170 (252)
T COG4604 155 DYVLLDEPLNNLDMKH 170 (252)
T ss_pred cEEEecCcccccchHH
Confidence 9999999999999864
No 232
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=231.86 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=127.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-----ccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-----AAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-----~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||++++|| +.+|+|+||+||| ||++.+.|+.+|+ +|++.++|.++.. ...+++
T Consensus 20 ~~il~~is~~i~~Ge----~~~I~G~nGsGKS-------TLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~ 88 (261)
T PRK14258 20 QKILEGVSMEIYQSK----VTAIIGPSGCGKS-------TFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRR 88 (261)
T ss_pred eeEeeceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhc
Confidence 469999999999999 8889999999999 9999999999885 7899999987632 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++ .|+.||+.+.....+. +..+..+++.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 89 ~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~ 167 (261)
T PRK14258 89 QVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAV 167 (261)
T ss_pred cEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 8999999988877 8999999875433332 1122345678889999874 35688999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 168 ~p~vllLDEP~~~LD~~~~ 186 (261)
T PRK14258 168 KPKVLLMDEPCFGLDPIAS 186 (261)
T ss_pred CCCEEEEeCCCccCCHHHH
Confidence 9999999999999998754
No 233
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-34 Score=233.30 Aligned_cols=153 Identities=18% Similarity=0.106 Sum_probs=128.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+|+||+|++|| +.+|+|+||+||| ||++.+.|+.+ |++|++.++|.++.. ...+++
T Consensus 38 ~~il~~vs~~i~~Ge----~~~I~G~nGsGKS-------TLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~ 106 (272)
T PRK14236 38 KQALFDISMRIPKNR----VTAFIGPSGCGKS-------TLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRR 106 (272)
T ss_pred eeEeeeEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhc
Confidence 469999999999999 7889999999999 99999999976 489999999988743 235577
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++.+++. |+.||+.+.....+... ....+.+.++++.+++. +..++.+.+|||||||||+|||||+.
T Consensus 107 ~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 185 (272)
T PRK14236 107 RVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAI 185 (272)
T ss_pred cEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHC
Confidence 89999999988875 99999987543333211 12235577888999885 35678899999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 186 ~p~lllLDEPt~gLD~~~~ 204 (272)
T PRK14236 186 EPEVLLLDEPTSALDPIST 204 (272)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999999764
No 234
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.5e-34 Score=227.26 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=122.5
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL----- 78 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~----- 78 (178)
|.|..+ .+++++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|+++...
T Consensus 8 ~~~~~~---~~il~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~ 73 (218)
T cd03290 8 FSWGSG---LATLSNINIRIPTGQ----LTMIVGQVGCGKS-------SLLLAILGEMQTLEGKVHWSNKNESEPSFEAT 73 (218)
T ss_pred EecCCC---CcceeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCCeEEECCccccccccccc
Confidence 455433 379999999999999 7889999999999 999999999999999999999876432
Q ss_pred -HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHH
Q psy860 79 -FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGN 146 (178)
Q Consensus 79 -~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGq 146 (178)
...++.++|++|++.++ ..|++||+.+... . ..+.+.++++.+++.+. .++++.+|||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~---~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~ 145 (218)
T cd03290 74 RSRNRYSVAYAAQKPWLL-NATVEENITFGSP---F----NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQ 145 (218)
T ss_pred chhhcceEEEEcCCCccc-cccHHHHHhhcCc---C----CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHH
Confidence 12456799999999877 5799999876321 1 12234455666665432 346789999999
Q ss_pred HHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 147 KRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 147 kQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
||||+|||||+.+|+++||||||+|||+.++
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~ 176 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLS 176 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHH
Confidence 9999999999999999999999999999753
No 235
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.2e-35 Score=230.77 Aligned_cols=150 Identities=19% Similarity=0.118 Sum_probs=122.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++++++||++++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++.. ...+++.++|+||+
T Consensus 16 ~~l~~i~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (234)
T cd03251 16 PVLRDISLDIPAGE----TVALVGPSGSGKS-------TLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQD 84 (234)
T ss_pred cceeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCC
Confidence 68999999999999 7889999999999 99999999999999999999987653 33556789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhH-----HHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGP-----IIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
+.+++ .|+.||+.++.... ...+..+ .+.++++.+ ++.+..++++.+||+||||||+|||||+.+|++++
T Consensus 85 ~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 161 (234)
T cd03251 85 VFLFN-DTVAENIAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILI 161 (234)
T ss_pred Ceecc-ccHHHHhhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88775 69999997642211 1001111 133455555 66667788899999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 162 LDEP~~~LD~~~~ 174 (234)
T cd03251 162 LDEATSALDTESE 174 (234)
T ss_pred EeCccccCCHHHH
Confidence 9999999999764
No 236
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=239.01 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=127.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+||||+|++|| ..+|+|+||+||| ||++.+.|+.+ |++|.|.++|.++.. ...+++
T Consensus 95 ~~~L~~is~~I~~Ge----~v~IvG~~GsGKS-------TLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~ 163 (329)
T PRK14257 95 KHVLHDLNLDIKRNK----VTAFIGPSGCGKS-------TFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRT 163 (329)
T ss_pred ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhc
Confidence 469999999999999 8889999999999 99999999975 579999999998853 245678
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCC-hhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVK-SGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~-~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++||||++.++ +.|++||+.+.....+....+ ..+.+.++++.+++. ...++++.+|||||||||+|||||+.
T Consensus 164 ~i~~v~q~~~~~-~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~ 242 (329)
T PRK14257 164 RIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIAL 242 (329)
T ss_pred cEEEEecCCccC-CCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHh
Confidence 899999999877 479999998765433322222 223467788888874 35678899999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++|||||||++||+.+.
T Consensus 243 ~p~IlLLDEPts~LD~~~~ 261 (329)
T PRK14257 243 EPEVLLMDEPTSALDPIAT 261 (329)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999998653
No 237
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=4.3e-35 Score=231.42 Aligned_cols=150 Identities=17% Similarity=0.058 Sum_probs=124.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++|++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|+++.. ....++.++|+||+
T Consensus 28 ~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 96 (226)
T cd03248 28 LVLQDVSFTLHPGE----VTALVGPSGSGKS-------TVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQE 96 (226)
T ss_pred ccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecc
Confidence 69999999999999 8889999999999 99999999999999999999987653 23456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCC-----hhHHHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVK-----SGPIIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~-----~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
+.+++ .|++||+.+..... ...+ ....+.++++.+ ++.+..++++.+|||||||||+|||||+.+|+++|
T Consensus 97 ~~l~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 173 (226)
T cd03248 97 PVLFA-RSLQDNIAYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLI 173 (226)
T ss_pred cHHHh-hhHHHHhccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88765 69999987532111 1001 111245678888 78877889999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 174 lDEPt~~LD~~~~ 186 (226)
T cd03248 174 LDEATSALDAESE 186 (226)
T ss_pred EeCCcccCCHHHH
Confidence 9999999999764
No 238
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=232.54 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=125.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----cccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++++.|+.+| ++|++.++|.++.. ...+++
T Consensus 33 ~~~l~~vs~~i~~Ge----~~~IiG~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~ 101 (274)
T PRK14265 33 FLALVDVHLKIPAKK----IIAFIGPSGCGKS-------TLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRR 101 (274)
T ss_pred eEEEeeeeeEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhh
Confidence 469999999999999 7889999999999 999999998753 68999999987742 234567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
+++|+||++.+++ .|+.+|+.+.....+.. ....+.+.++++.+++. +..++++.+|||||||||+|||||+.+
T Consensus 102 ~i~~v~q~~~l~~-~tv~~nl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~ 179 (274)
T PRK14265 102 QVGMVFQRPNPFP-KSIYENIAFAPRANGYK-GNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMK 179 (274)
T ss_pred cEEEEccCCcccc-ccHHHHHHhHHHhcCch-HHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhC
Confidence 8999999988876 49999998754332221 12234566778888863 456889999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 180 p~lllLDEPt~~LD~~~~ 197 (274)
T PRK14265 180 PDVLLMDEPCSALDPIST 197 (274)
T ss_pred CCEEEEeCCcccCCHHHH
Confidence 999999999999998754
No 239
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=4.2e-34 Score=229.18 Aligned_cols=146 Identities=13% Similarity=0.130 Sum_probs=124.4
Q ss_pred hhhhhccCccccccchhhhcc-----HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH
Q psy860 4 FQYLSGIGYCPQFNGINEHLT-----AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL 78 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~-----~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~ 78 (178)
|.|+... ..+++++++++ .|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.
T Consensus 1 ~~y~~~~---~~~~~~~l~~~~~~i~~Ge----~~~i~G~NGsGKS-------TLlk~L~G~~~p~~G~i~~~g~----- 61 (246)
T cd03237 1 YTYPTMK---KTLGEFTLEVEGGSISESE----VIGILGPNGIGKT-------TFIKMLAGVLKPDEGDIEIELD----- 61 (246)
T ss_pred CCCcccc---cccCcEEEEEecCCcCCCC----EEEEECCCCCCHH-------HHHHHHhCCCcCCCCeEEECCc-----
Confidence 5676444 68888888886 678 7889999999999 9999999999999999988774
Q ss_pred HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 79 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 79 ~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.++|+||++..++..||.|++.++..... .....+.++++.+++.+..++++.+|||||||||+|||||+.
T Consensus 62 -----~i~~~~q~~~~~~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~ 132 (246)
T cd03237 62 -----TVSYKPQYIKADYEGTVRDLLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSK 132 (246)
T ss_pred -----eEEEecccccCCCCCCHHHHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 59999999887788999999876432211 112346788999999988999999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||++||+.++
T Consensus 133 ~p~llllDEPt~~LD~~~~ 151 (246)
T cd03237 133 DADIYLLDEPSAYLDVEQR 151 (246)
T ss_pred CCCEEEEeCCcccCCHHHH
Confidence 9999999999999999764
No 240
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.1e-34 Score=255.38 Aligned_cols=146 Identities=16% Similarity=0.060 Sum_probs=121.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| ..+|+|+||+||| ||++.+.|+. |++|+|.++|.++.+ ..++|+.|+||||
T Consensus 363 ~~vL~~i~l~i~~G~----~vaIvG~SGsGKS-------TL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q 430 (588)
T PRK11174 363 KTLAGPLNFTLPAGQ----RIALVGPSGAGKT-------SLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQ 430 (588)
T ss_pred CeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecC
Confidence 479999999999999 8889999999999 9999999999 899999999999876 4578889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-------cccC----cCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-------YRHR----VSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~~~~----~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+|. -|++||+.++. + ....+++.++++..++.+ ..|. .-..||||||||++|||||+.+
T Consensus 431 ~~~LF~-~TI~eNI~~g~-----~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~ 503 (588)
T PRK11174 431 NPQLPH-GTLRDNVLLGN-----P-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQP 503 (588)
T ss_pred CCcCCC-cCHHHHhhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcC
Confidence 999875 59999998741 1 122445666666655432 2233 3456999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|+||||||+||+.+.
T Consensus 504 ~~IliLDE~TSaLD~~te 521 (588)
T PRK11174 504 CQLLLLDEPTASLDAHSE 521 (588)
T ss_pred CCEEEEeCCccCCCHHHH
Confidence 999999999999998753
No 241
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.4e-34 Score=225.47 Aligned_cols=146 Identities=19% Similarity=0.138 Sum_probs=122.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+++++|.++.. ..++++.++|+||
T Consensus 17 ~~~l~~i~~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 85 (221)
T cd03244 17 PPVLKNISFSIKPGE----KVGIVGRTGSGKS-------SLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQ 85 (221)
T ss_pred cccccceEEEECCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECC
Confidence 369999999999999 7889999999999 99999999999999999999987753 3456778999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-----------cCcCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-----------HRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .|++||+.++. . ...+++.++++.+++.+.. ++.+.+||+||||||+|||||+.+
T Consensus 86 ~~~l~~-~tv~enl~~~~---~----~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~ 157 (221)
T cd03244 86 DPVLFS-GTIRSNLDPFG---E----YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRK 157 (221)
T ss_pred CCcccc-chHHHHhCcCC---C----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcC
Confidence 988765 59999986431 1 1134456666777665443 468899999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++++|||||+|||+.++
T Consensus 158 p~llllDEP~~~LD~~~~ 175 (221)
T cd03244 158 SKILVLDEATASVDPETD 175 (221)
T ss_pred CCEEEEeCccccCCHHHH
Confidence 999999999999999764
No 242
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=3.4e-34 Score=258.14 Aligned_cols=153 Identities=17% Similarity=0.109 Sum_probs=128.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|+|+.. ..++|+||||+|++|| ..+|+|+|||||| ||++.+.|+.+|++|+|.++|.++.+ ...+
T Consensus 459 f~Y~~~--~~~vL~~isl~i~~Ge----~vaIvG~sGsGKS-------TLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 525 (686)
T TIGR03797 459 FRYRPD--GPLILDDVSLQIEPGE----FVAIVGPSGSGKS-------TLLRLLLGFETPESGSVFYDGQDLAGLDVQAV 525 (686)
T ss_pred EEcCCC--CccceeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCEEEECCEEcCcCCHHHH
Confidence 667432 1479999999999999 8889999999999 99999999999999999999999875 5678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv 150 (178)
|+.|+||||++.+|. -|++||+.++. + ...+++.++++..++.+..++ .-..||||||||+
T Consensus 526 r~~i~~v~Q~~~lf~-gTI~eNi~~~~-----~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRi 597 (686)
T TIGR03797 526 RRQLGVVLQNGRLMS-GSIFENIAGGA-----P--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRL 597 (686)
T ss_pred HhccEEEccCCccCc-ccHHHHHhcCC-----C--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 999999999999875 59999998631 1 234567778888877643322 2356999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++|+||||||+||+.+.
T Consensus 598 alARAll~~p~iLiLDEpTS~LD~~te 624 (686)
T TIGR03797 598 LIARALVRKPRILLFDEATSALDNRTQ 624 (686)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 999999999999999999999998753
No 243
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.8e-34 Score=248.02 Aligned_cols=162 Identities=16% Similarity=0.168 Sum_probs=134.9
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc----cccccccccccccH--
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ----AAQNSLLMTNIMHL-- 78 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~----~g~i~~~g~~~~~~-- 78 (178)
.|....+..++++||||+|.+|| ..+|+|.+||||| |+...+.|++++. +|+|.++|+++...
T Consensus 14 ~~~~~~~~~~~v~~vsf~v~~GE----~lgIvGESGsGKS-------t~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~ 82 (539)
T COG1123 14 EFATDGGRVPAVRDVSFEVEPGE----ILGIVGESGSGKS-------TLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82 (539)
T ss_pred EEecCCcceeeeecceEEecCCc----EEEEEcCCCCCHH-------HHHHHHhccCCCCCcccceEEEECCcchhcCCH
Confidence 34444444689999999999999 6779999999999 9999999998776 89999999876543
Q ss_pred ---Hhhc-cceEEecCCC--CCCCCCCHHHHHHHHHHhcC-CCCCChhHHHHHHHHHcCCCcccc--CcCCCCChHHHHH
Q psy860 79 ---FQYL-SGIGYCPQFN--GINEHLTAQEMLECFSALRG-IPGVKSGPIIDYWIDLLGLTEYRH--RVSGRYSGGNKRK 149 (178)
Q Consensus 79 ---~~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~-~~~~~~~~~~~~~l~~~~L~~~~~--~~~~~LSgGqkQR 149 (178)
.++| +.|+|+||+| .+.|-+|+.+.+.-.....+ ....+.++++.++|+.++|++... ++|++||||||||
T Consensus 83 ~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQR 162 (539)
T COG1123 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQR 162 (539)
T ss_pred HHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHH
Confidence 2333 6799999997 47888999888876555443 345667788999999999986554 4999999999999
Q ss_pred HHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 150 LSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 150 v~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|.||+||+.+|++||+||||++||+..+
T Consensus 163 v~iAmALa~~P~LLIaDEPTTaLDvt~q 190 (539)
T COG1123 163 VMIAMALALKPKLLIADEPTTALDVTTQ 190 (539)
T ss_pred HHHHHHHhCCCCEEEECCCccccCHHHH
Confidence 9999999999999999999999998654
No 244
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-34 Score=228.00 Aligned_cols=153 Identities=13% Similarity=0.097 Sum_probs=127.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|+|+||+|..|| ..+|+|+||+||| ||++.+.|+.+ |++|++.++|.++.. ..+.++
T Consensus 16 ~~~l~~~s~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~ 84 (250)
T PRK14266 16 AHILKNVNLDIPKNS----VTALIGPSGCGKS-------TFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRK 84 (250)
T ss_pred eEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhh
Confidence 469999999999999 7889999999999 99999999853 489999999988743 335677
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCC-CCChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIP-GVKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+++|+||++.+++. |+.+|+.+.....+.. .....+++.++++.+++. +..++.+.+||+|||||++|||||+.
T Consensus 85 ~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 163 (250)
T PRK14266 85 KVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV 163 (250)
T ss_pred heEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 89999999988874 9999998754333221 122345678889999884 35688899999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 164 ~p~llllDEP~~gLD~~~~ 182 (250)
T PRK14266 164 SPEVILMDEPCSALDPIST 182 (250)
T ss_pred CCCEEEEcCCCccCCHHHH
Confidence 9999999999999999754
No 245
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=5.9e-34 Score=249.10 Aligned_cols=153 Identities=17% Similarity=0.205 Sum_probs=128.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--H-hhccceEEecC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--F-QYLSGIGYCPQ 90 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~-~~~~~ig~v~Q 90 (178)
.+|++|||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... . ..+++++|+||
T Consensus 277 ~~l~~isl~i~~Ge----~~~l~G~NGsGKS-------TLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q 345 (510)
T PRK15439 277 EGFRNISLEVRAGE----ILGLAGVVGAGRT-------ELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPE 345 (510)
T ss_pred CCccceeEEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCC
Confidence 36999999999999 8889999999999 999999999999999999999877532 1 23568999999
Q ss_pred CC---CCCCCCCHHHHHHHHHH--hc-CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 91 FN---GINEHLTAQEMLECFSA--LR-GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 91 ~~---~l~~~ltv~e~l~~~~~--~~-~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
++ .+++.+|+.+++..... .. .....+.++.++++++.+++. +..++++.+|||||||||+|||||+.+|++|
T Consensus 346 ~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lL 425 (510)
T PRK15439 346 DRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425 (510)
T ss_pred ChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEE
Confidence 84 58888999999864311 11 111122345688999999997 7889999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 426 lLDEPt~gLD~~~~ 439 (510)
T PRK15439 426 IVDEPTRGVDVSAR 439 (510)
T ss_pred EECCCCcCcChhHH
Confidence 99999999999865
No 246
>KOG0058|consensus
Probab=100.00 E-value=4.2e-34 Score=251.07 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=125.7
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~ 81 (178)
|.|+.+-. .++|+|+||+|++|| .+|++||||+||| |+...+.++..|++|+|.+||.++.++ ..+
T Consensus 473 FaYP~Rp~-~~Vlk~lsfti~pGe----~vALVGPSGsGKS-------TiasLL~rfY~PtsG~IllDG~~i~~~~~~~l 540 (716)
T KOG0058|consen 473 FAYPTRPD-VPVLKNLSFTIRPGE----VVALVGPSGSGKS-------TIASLLLRFYDPTSGRILLDGVPISDINHKYL 540 (716)
T ss_pred eecCCCCC-chhhcCceeeeCCCC----EEEEECCCCCCHH-------HHHHHHHHhcCCCCCeEEECCeehhhcCHHHH
Confidence 78877753 489999999999999 7889999999999 888999999999999999999999875 457
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-------CCCcccc----CcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-------GLTEYRH----RVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~L~~~~~----~~~~~LSgGqkQRv 150 (178)
|++||+|-|+|.+|. -|++||+.+... ....+++.++.+.- ++++.-| .+-.+||||||||+
T Consensus 541 r~~Ig~V~QEPvLFs-~sI~eNI~YG~~------~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRI 613 (716)
T KOG0058|consen 541 RRKIGLVGQEPVLFS-GSIRENIAYGLD------NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRI 613 (716)
T ss_pred HHHeeeeeccceeec-ccHHHHHhcCCC------CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHH
Confidence 899999999999864 599999987532 12233344333332 2333333 34458999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.||++|||||.||+||..+
T Consensus 614 AIARALlr~P~VLILDEATSALDaeS 639 (716)
T KOG0058|consen 614 AIARALLRNPRVLILDEATSALDAES 639 (716)
T ss_pred HHHHHHhcCCCEEEEechhhhcchhh
Confidence 99999999999999999999999875
No 247
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=6.1e-34 Score=255.10 Aligned_cols=153 Identities=21% Similarity=0.175 Sum_probs=129.7
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc--cccccccccccccHHhhccceEEec
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ--AAQNSLLMTNIMHLFQYLSGIGYCP 89 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~--~g~i~~~g~~~~~~~~~~~~ig~v~ 89 (178)
..++|+|||+++++|| +.+|+|+||+||| ||++.+.|..+|+ +|+|.++|+++.. +.+++++||+
T Consensus 80 ~~~iL~~vs~~i~~Ge----~~aI~GpnGaGKS-------TLL~iLaG~~~~~~~sG~I~inG~~~~~--~~~~~i~yv~ 146 (659)
T PLN03211 80 ERTILNGVTGMASPGE----ILAVLGPSGSGKS-------TLLNALAGRIQGNNFTGTILANNRKPTK--QILKRTGFVT 146 (659)
T ss_pred CCeeeeCCEEEEECCE----EEEEECCCCCCHH-------HHHHHHhCCCCCCceeEEEEECCEECch--hhccceEEEC
Confidence 3579999999999999 7889999999999 9999999998875 8999999987642 3456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCcccc-----CcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRH-----RVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~-----~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
|++.+++.+||+|++.+....+. ...++..++++++++.+||.+..| +.+..|||||||||+||++|+.+|+
T Consensus 147 Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~ 226 (659)
T PLN03211 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS 226 (659)
T ss_pred cccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCC
Confidence 99999999999999998654431 111233456888999999987664 4567899999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|+|||||+|||+.++
T Consensus 227 iLlLDEPtsgLD~~~~ 242 (659)
T PLN03211 227 LLILDEPTSGLDATAA 242 (659)
T ss_pred EEEEeCCCCCcCHHHH
Confidence 9999999999998754
No 248
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-34 Score=228.05 Aligned_cols=147 Identities=16% Similarity=0.080 Sum_probs=119.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++++++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ...+++.++|+||
T Consensus 14 ~~~l~~i~~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 82 (236)
T cd03253 14 RPVLKDVSFTIPAGK----KVAIVGPSGSGKS-------TILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQ 82 (236)
T ss_pred CceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECC
Confidence 469999999999999 8889999999999 99999999999999999999987754 3455678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHH---------HHc--CCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWI---------DLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l---------~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .|+.||+.++... . . ...+.+.+ +.+ ++....++.+.+||+||||||+|||||+.+
T Consensus 83 ~~~~~~-~tv~~nl~~~~~~--~---~-~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 83 DTVLFN-DTIGYNIRYGRPD--A---T-DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred CChhhc-chHHHHHhhcCCC--C---C-HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 998775 6999999764211 1 1 11122222 333 344445667889999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++||||||+|||+.++
T Consensus 156 p~llllDEP~~~LD~~~~ 173 (236)
T cd03253 156 PPILLLDEATSALDTHTE 173 (236)
T ss_pred CCEEEEeCCcccCCHHHH
Confidence 999999999999999764
No 249
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=233.20 Aligned_cols=153 Identities=16% Similarity=0.134 Sum_probs=127.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----ccccccccccccccc----HHhhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMH----LFQYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~----~~~~~~ 83 (178)
.++|++|||+|.+|| +.+|+|+||+||| ||++.+.|+.+ |++|+|.++|.++.. ...+++
T Consensus 58 ~~iL~~is~~i~~Ge----~~~IvG~nGsGKS-------TLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~ 126 (305)
T PRK14264 58 DHALKGVSMDIPEKS----VTALIGPSGCGKS-------TFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRK 126 (305)
T ss_pred eeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhh
Confidence 469999999999999 7889999999999 99999999975 689999999987643 335567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcC------------CCC-CChhHHHHHHHHHcCCC----ccccCcCCCCChHH
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRG------------IPG-VKSGPIIDYWIDLLGLT----EYRHRVSGRYSGGN 146 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~------------~~~-~~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGq 146 (178)
+++|+||++.+++ .|++||+.+...... ... ...++.+.++++.+++. +..++++.+|||||
T Consensus 127 ~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 205 (305)
T PRK14264 127 RVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQ 205 (305)
T ss_pred ceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHH
Confidence 8999999988776 599999987533211 111 11245678889999884 45688899999999
Q ss_pred HHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 147 KRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 147 kQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
||||+|||||+++|++|||||||+|||+.++
T Consensus 206 ~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~ 236 (305)
T PRK14264 206 QQRLCIARCLAVDPEVILMDEPASALDPIAT 236 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 9999999999999999999999999998754
No 250
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=5.6e-34 Score=252.88 Aligned_cols=152 Identities=16% Similarity=0.087 Sum_probs=128.3
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+++ .++|+|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|.|.++|.++.+ ...+
T Consensus 348 f~y~~~---~~il~~i~l~i~~Ge----~iaIvG~SGsGKS-------TLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 413 (592)
T PRK10790 348 FAYRDD---NLVLQNINLSVPSRG----FVALVGHTGSGKS-------TLASLLMGYYPLTEGEIRLDGRPLSSLSHSVL 413 (592)
T ss_pred EEeCCC---CceeeceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCceEEECCEEhhhCCHHHH
Confidence 567532 369999999999999 8889999999999 99999999999999999999999875 4678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-------C----cCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-------R----VSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~----~~~~LSgGqkQRv 150 (178)
++.|+||||++.+|+. |+++|+.++. ....+++.++++.+++.+..+ . .-..||||||||+
T Consensus 414 ~~~i~~v~Q~~~lF~~-Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRi 485 (592)
T PRK10790 414 RQGVAMVQQDPVVLAD-TFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLL 485 (592)
T ss_pred HhheEEEccCCccccc-hHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 8999999999998876 9999998742 122456777788877653222 2 2356999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++++||||||+||+.+.
T Consensus 486 alARaLl~~~~illlDEpts~LD~~t~ 512 (592)
T PRK10790 486 ALARVLVQTPQILILDEATANIDSGTE 512 (592)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHH
Confidence 999999999999999999999998753
No 251
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=9.8e-34 Score=227.61 Aligned_cols=138 Identities=15% Similarity=0.093 Sum_probs=119.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++++.|+.+|++|++.+++ +..++|+||++
T Consensus 17 ~~vl~~vs~~i~~Ge----~~~I~G~NGsGKS-------TLl~~i~Gl~~p~~G~i~~~~---------~~~i~~v~q~~ 76 (251)
T PRK09544 17 RRVLSDVSLELKPGK----ILTLLGPNGAGKS-------TLVRVVLGLVAPDEGVIKRNG---------KLRIGYVPQKL 76 (251)
T ss_pred ceEEEeEEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECC---------ccCEEEecccc
Confidence 469999999999999 8889999999999 999999999999999998765 23699999998
Q ss_pred CCCCCC--CHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 93 GINEHL--TAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 93 ~l~~~l--tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
.+++.+ |+.+++.+. . ....+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+
T Consensus 77 ~~~~~l~~~~~~~~~~~---~----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 149 (251)
T PRK09544 77 YLDTTLPLTVNRFLRLR---P----GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQ 149 (251)
T ss_pred ccccccChhHHHHHhcc---c----cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 776654 666665421 1 1124567889999999998999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 150 ~LD~~~~ 156 (251)
T PRK09544 150 GVDVNGQ 156 (251)
T ss_pred CCCHHHH
Confidence 9998764
No 252
>KOG0055|consensus
Probab=100.00 E-value=2.3e-34 Score=264.47 Aligned_cols=156 Identities=19% Similarity=0.144 Sum_probs=126.7
Q ss_pred hhhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh
Q psy860 3 LFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ 80 (178)
Q Consensus 3 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~ 80 (178)
-|+|+++- ..++|+|+||.|+.|+ .+||+|+|||||| |+++.+.|+..|++|+|.+||.++..+ ..
T Consensus 357 ~FsYPsRp-dv~Il~g~sl~i~~G~----~valVG~SGsGKS-------T~i~LL~RfydP~~G~V~idG~di~~~~~~~ 424 (1228)
T KOG0055|consen 357 CFSYPSRP-DVKILKGVSLKIPSGQ----TVALVGPSGSGKS-------TLIQLLARFYDPTSGEVLIDGEDIRNLNLKW 424 (1228)
T ss_pred EecCCCCC-cchhhCCeEEEeCCCC----EEEEECCCCCCHH-------HHHHHHHHhcCCCCceEEEcCccchhcchHH
Confidence 48897776 4589999999999999 8999999999999 999999999999999999999999864 56
Q ss_pred hccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-------CCccccC----cCCCCChHHHHH
Q psy860 81 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-------LTEYRHR----VSGRYSGGNKRK 149 (178)
Q Consensus 81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~~~~----~~~~LSgGqkQR 149 (178)
+|+.||.|+|+|.+ +..|++||+.+.. +. ..++++.++.+..+ +++..+. .-.+||||||||
T Consensus 425 lr~~iglV~QePvl-F~~tI~eNI~~G~-----~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQR 497 (1228)
T KOG0055|consen 425 LRSQIGLVSQEPVL-FATTIRENIRYGK-----PD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQR 497 (1228)
T ss_pred HHhhcCeeeechhh-hcccHHHHHhcCC-----Cc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHH
Confidence 88999999999955 5789999998632 11 22334444443332 2222222 234699999999
Q ss_pred HHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 150 LSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 150 v~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
++|||||+.+|++|+||||||+||+++.
T Consensus 498 IAIARalv~~P~ILLLDEaTSaLD~~se 525 (1228)
T KOG0055|consen 498 IAIARALVRNPKILLLDEATSALDAESE 525 (1228)
T ss_pred HHHHHHHHhCCCEEEecCcccccCHHHH
Confidence 9999999999999999999999999864
No 253
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.4e-33 Score=226.16 Aligned_cols=154 Identities=17% Similarity=0.171 Sum_probs=126.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccH--Hhhc-cceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHL--FQYL-SGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~--~~~~-~~ig~ 87 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++++.|+ .+|++|++.++|.++... ...+ .+++|
T Consensus 20 ~~~l~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 88 (252)
T CHL00131 20 NEILKGLNLSINKGE----IHAIMGPNGSGKS-------TLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFL 88 (252)
T ss_pred EEeeecceeEEcCCc----EEEEECCCCCCHH-------HHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEE
Confidence 469999999999999 8889999999999 999999997 579999999999887543 2222 25899
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhc----CCCC---CChhHHHHHHHHHcCCC-ccccCcCC-CCChHHHHHHHHHHHHhC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALR----GIPG---VKSGPIIDYWIDLLGLT-EYRHRVSG-RYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~----~~~~---~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGqkQRv~IAraL~~ 158 (178)
+||++.+++.+|+.+++.+..... .... .+..+++.++++.+++. ...++.+. +|||||||||+|||||+.
T Consensus 89 ~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 168 (252)
T CHL00131 89 AFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALL 168 (252)
T ss_pred EeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHc
Confidence 999999999999999987643211 1111 11234577889999997 56788887 599999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|+++||||||+|||+.++
T Consensus 169 ~p~llllDEPt~~LD~~~~ 187 (252)
T CHL00131 169 DSELAILDETDSGLDIDAL 187 (252)
T ss_pred CCCEEEEcCCcccCCHHHH
Confidence 9999999999999998764
No 254
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-33 Score=227.40 Aligned_cols=153 Identities=18% Similarity=0.116 Sum_probs=126.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-----ccccccccccccc------cHHhh
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-----QAAQNSLLMTNIM------HLFQY 81 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-----~~g~i~~~g~~~~------~~~~~ 81 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+| ++|++.++|.++. ....+
T Consensus 29 ~~vl~~vs~~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~ 97 (265)
T PRK14252 29 YQALKNINMMVHEKQ----VTALIGPSGCGKS-------TFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEV 97 (265)
T ss_pred eeeeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHH
Confidence 469999999999999 8889999999999 999999999764 7999999987653 12345
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCC----ccccCcCCCCChHHHHHHHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLT----EYRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~----~~~~~~~~~LSgGqkQRv~IAraL 156 (178)
+++++|+||++.+++. |+.||+.+.....+.... ..++.+.++++.+++. +..++.+.+|||||||||+|||||
T Consensus 98 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 176 (265)
T PRK14252 98 RMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARAL 176 (265)
T ss_pred hccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHH
Confidence 6789999999988875 999999875433332221 2245677888888873 456788999999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCCCCC
Q psy860 157 IGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 157 ~~~P~~lllDEPt~gLD~~~~ 177 (178)
+.+|++++|||||+|||+.++
T Consensus 177 ~~~p~llllDEPt~gLD~~~~ 197 (265)
T PRK14252 177 ATDPEILLFDEPTSALDPIAT 197 (265)
T ss_pred HcCCCEEEEeCCCccCCHHHH
Confidence 999999999999999998754
No 255
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=9.1e-34 Score=250.97 Aligned_cols=154 Identities=22% Similarity=0.171 Sum_probs=130.8
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+++. .++|+||||++++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ...+
T Consensus 346 f~y~~~~--~~il~~i~~~i~~G~----~~aivG~sGsGKS-------TL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~ 412 (574)
T PRK11160 346 FTYPDQP--QPVLKGLSLQIKAGE----KVALLGRTGCGKS-------TLLQLLTRAWDPQQGEILLNGQPIADYSEAAL 412 (574)
T ss_pred EECCCCC--CcceecceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 5564331 369999999999999 8889999999999 99999999999999999999998876 4577
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC----------cCCCCChHHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR----------VSGRYSGGNKRKLS 151 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~----------~~~~LSgGqkQRv~ 151 (178)
|+.|+||||++.+|. -|++||+.++. + ....+++.++++.+++.+..++ ....||||||||++
T Consensus 413 r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRia 485 (574)
T PRK11160 413 RQAISVVSQRVHLFS-ATLRDNLLLAA-----P-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLG 485 (574)
T ss_pred HhheeEEcccchhhc-ccHHHHhhcCC-----C-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHH
Confidence 889999999998876 59999997642 1 2335668888999998765443 45679999999999
Q ss_pred HHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 152 TAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 152 IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|||||+.+|++++||||||+||+.+.
T Consensus 486 lARall~~~~ililDE~ts~lD~~t~ 511 (574)
T PRK11160 486 IARALLHDAPLLLLDEPTEGLDAETE 511 (574)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 99999999999999999999998763
No 256
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.8e-33 Score=222.22 Aligned_cols=143 Identities=20% Similarity=0.212 Sum_probs=119.7
Q ss_pred hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCC--CCC
Q psy860 21 EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGIN--EHL 98 (178)
Q Consensus 21 ~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~--~~l 98 (178)
|+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|+++. +.+++++|+||++.++ +.+
T Consensus 1 l~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~---~~~~~i~~v~q~~~~~~~~~~ 66 (223)
T TIGR03771 1 LSADKGE----LLGLLGPNGAGKT-------TLLRAILGLIPPAKGTVKVAGASPG---KGWRHIGYVPQRHEFAWDFPI 66 (223)
T ss_pred CccCCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCccch---HhhCcEEEecccccccCCCCc
Confidence 5688999 7889999999999 9999999999999999999998753 3456799999998764 347
Q ss_pred CHHHHHHHHHHhc-C---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 99 TAQEMLECFSALR-G---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 99 tv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
|+.+++.+..... + ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+++||||||+|||+
T Consensus 67 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 67 SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred cHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9999987642111 1 11122345688899999999888999999999999999999999999999999999999999
Q ss_pred CCC
Q psy860 175 YNT 177 (178)
Q Consensus 175 ~~~ 177 (178)
.++
T Consensus 147 ~~~ 149 (223)
T TIGR03771 147 PTQ 149 (223)
T ss_pred HHH
Confidence 764
No 257
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=7.7e-34 Score=256.63 Aligned_cols=154 Identities=14% Similarity=0.025 Sum_probs=127.0
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|+|++. ..++|+|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|.|.++|.++.+ ..++
T Consensus 485 f~y~~~--~~~vL~~isl~i~~Ge----~vaIvG~sGsGKS-------TLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 551 (710)
T TIGR03796 485 FGYSPL--EPPLIENFSLTLQPGQ----RVALVGGSGSGKS-------TIAKLVAGLYQPWSGEILFDGIPREEIPREVL 551 (710)
T ss_pred EecCCC--CCCcccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEeHHHCCHHHH
Confidence 566532 2479999999999999 8889999999999 99999999999999999999999875 4678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------c----CcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------H----RVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~LSgGqkQRv 150 (178)
|+.|+||||++.+|. -|++||+.++. + ....+++.++++..++.+.. + ..-..||||||||+
T Consensus 552 r~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRi 624 (710)
T TIGR03796 552 ANSVAMVDQDIFLFE-GTVRDNLTLWD-----P-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRL 624 (710)
T ss_pred HhheeEEecCChhhh-ccHHHHhhCCC-----C-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHH
Confidence 999999999998875 59999997531 1 12345566777776664322 2 23456999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++++||||||+||+.+.
T Consensus 625 aLARall~~p~iliLDEptS~LD~~te 651 (710)
T TIGR03796 625 EIARALVRNPSILILDEATSALDPETE 651 (710)
T ss_pred HHHHHHhhCCCEEEEECccccCCHHHH
Confidence 999999999999999999999998753
No 258
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-33 Score=218.33 Aligned_cols=156 Identities=16% Similarity=0.085 Sum_probs=135.6
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEe
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYC 88 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v 88 (178)
.....+++|||+++.|| ..+|+||||+||| |+++.+.|-..|++|++.++|.+... ..++.++-+++
T Consensus 12 ~Gr~ll~~vsl~~~pGe----v~ailGPNGAGKS-------TlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 12 AGRRLLDGVSLDLRPGE----VLAILGPNGAGKS-------TLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred ecceeccCcceeccCCc----EEEEECCCCccHH-------HHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 44689999999999999 6779999999999 99999999999999999999998765 45667788999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcC--CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC------CC
Q psy860 89 PQFNGINEHLTAQEMLECFSALRG--IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG------DR 160 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~------~P 160 (178)
||+..+-+.+||+|.+.+...-.+ ....+..+.++++|+..++..++.+...+|||||||||.+||.|++ ++
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~ 160 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSG 160 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCC
Confidence 999999999999999998654332 2223556678999999999999999999999999999999999986 44
Q ss_pred CeEEeeCCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~~ 177 (178)
++|+||||||+||+.++
T Consensus 161 r~L~LDEPtsaLDi~HQ 177 (259)
T COG4559 161 RWLFLDEPTSALDIAHQ 177 (259)
T ss_pred ceEEecCCccccchHHH
Confidence 68999999999998754
No 259
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=2.8e-34 Score=228.41 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=119.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..++++.++|+||
T Consensus 16 ~~~l~~i~~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q 84 (238)
T cd03249 16 VPILKGLSLTIPPGK----TVALVGSSGCGKS-------TVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQ 84 (238)
T ss_pred ccceeceEEEecCCC----EEEEEeCCCCCHH-------HHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECC
Confidence 369999999999999 7889999999999 99999999999999999999987643 3345667999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhH-----HHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGP-----IIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
++.+++ .|++|++.+..... ...+..+ .+.++++.+ ++....++.+.+|||||||||+|||||+.+|+++
T Consensus 85 ~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 161 (238)
T cd03249 85 EPVLFD-GTIAENIRYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKIL 161 (238)
T ss_pred chhhhh-hhHHHHhhccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEE
Confidence 988775 69999987632111 0001010 012222333 4445567788999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
+|||||+|||+.++
T Consensus 162 llDEP~~gLD~~~~ 175 (238)
T cd03249 162 LLDEATSALDAESE 175 (238)
T ss_pred EEeCccccCCHHHH
Confidence 99999999998764
No 260
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=6.9e-34 Score=247.40 Aligned_cols=146 Identities=18% Similarity=0.117 Sum_probs=123.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ....++.++|+||
T Consensus 16 ~~il~~vsl~i~~Ge----~~~liG~nGsGKS-------TLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 84 (490)
T PRK10938 16 TKTLQLPSLTLNAGD----SWAFVGANGSGKS-------ALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQ 84 (490)
T ss_pred eeecccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceecc
Confidence 469999999999999 8889999999999 99999999999999999988876543 2344567999999
Q ss_pred CCCC--C------CCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 91 FNGI--N------EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 91 ~~~l--~------~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
++.+ + ..+|+.+++.+. .+..+++.++++.+++.+..++++.+|||||||||+||+||+.+|++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 156 (490)
T PRK10938 85 RNNTDMLSPGEDDTGRTTAEIIQDE--------VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL 156 (490)
T ss_pred CcchhhcccchhhccccHHHhcccc--------hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 8643 1 146777765431 12356788999999999889999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
|||||||+|||+.++
T Consensus 157 llLDEPt~~LD~~~~ 171 (490)
T PRK10938 157 LILDEPFDGLDVASR 171 (490)
T ss_pred EEEcCCcccCCHHHH
Confidence 999999999999764
No 261
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.2e-33 Score=247.76 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=127.9
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|+|+.+. .++|+|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ..++
T Consensus 328 f~y~~~~--~~il~~i~l~i~~G~----~~~ivG~sGsGKS-------TL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 328 VAYPGRR--APALRPVSFTVPPGE----RVALVGPSGAGKS-------TLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred EECCCCC--cccccceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 5664321 369999999999999 8889999999999 99999999999999999999998875 3678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv 150 (178)
|+.++||+|++.+|+ .|++||+.++. + ....+++.++++..++.+..+ ....+||||||||+
T Consensus 395 r~~i~~v~Q~~~lf~-~ti~~Ni~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri 467 (529)
T TIGR02857 395 RDQIAWVPQHPFLFA-GTIAENIRLAR-----P-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRL 467 (529)
T ss_pred HhheEEEcCCCcccC-cCHHHHHhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHH
Confidence 889999999998875 59999997642 1 112456777777777654322 23467999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++++||||||+||+.+.
T Consensus 468 ~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 468 ALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 999999999999999999999999764
No 262
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-33 Score=215.49 Aligned_cols=118 Identities=24% Similarity=0.262 Sum_probs=107.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~ 91 (178)
.++|+++||++.+|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... .+.++.++|+||+
T Consensus 13 ~~~l~~~~~~i~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~ 81 (173)
T cd03230 13 KTALDDISLTVEKGE----IYGLLGPNGAGKT-------TLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEE 81 (173)
T ss_pred eeeeeeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecC
Confidence 469999999999999 8889999999999 999999999999999999999876542 3456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++.+|+.||+. |||||||||+|||||+.+|++++|||||++
T Consensus 82 ~~~~~~~tv~~~~~------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~ 125 (173)
T cd03230 82 PSLYENLTVRENLK------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSG 125 (173)
T ss_pred CccccCCcHHHHhh------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccC
Confidence 99988899999873 999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 126 LD~~~~ 131 (173)
T cd03230 126 LDPESR 131 (173)
T ss_pred CCHHHH
Confidence 998764
No 263
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=252.50 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=138.7
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh--
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ-- 80 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~-- 80 (178)
.|..+.+..++|+++||+++.|| +.+|.|+||+||| ||++++.|+.+|++|++.++|+++... .+
T Consensus 13 ~y~~~~~~~~il~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~ 81 (648)
T PRK10535 13 SYPSGEEQVEVLKGISLDIYAGE----MVAIVGASGSGKS-------TLMNILGCLDKPTSGTYRVAGQDVATLDADALA 81 (648)
T ss_pred EeCCCCCCeeeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHH
Confidence 45433333579999999999999 8889999999999 999999999999999999999987642 22
Q ss_pred -h-ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 81 -Y-LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 81 -~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+ ++.++|+||++.+++.+|+.||+.+.....+....+.++++.++++.+++.+..++.+.+||+|||||++|||||+.
T Consensus 82 ~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~ 161 (648)
T PRK10535 82 QLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMN 161 (648)
T ss_pred HHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 2 46899999999999999999999875544343334445678899999999988999999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 162 ~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 162 GGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCCEEEEECCCCCCCHHHH
Confidence 9999999999999999764
No 264
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=244.54 Aligned_cols=153 Identities=16% Similarity=0.167 Sum_probs=126.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQ 90 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q 90 (178)
++|++|||+|+.|| +.+|+|+||+||| ||++++.|+.+|++|+|+++|+++... ...+++++|+||
T Consensus 262 ~~l~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q 330 (491)
T PRK10982 262 PSIRDVSFDLHKGE----ILGIAGLVGAKRT-------DIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTE 330 (491)
T ss_pred cccceeeEEEeCCc----EEEEecCCCCCHH-------HHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCC
Confidence 58999999999999 8889999999999 999999999999999999999877532 234677999999
Q ss_pred CC---CCCCCCCHHHHHHH-----HHHhcCC-CCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 91 FN---GINEHLTAQEMLEC-----FSALRGI-PGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 91 ~~---~l~~~ltv~e~l~~-----~~~~~~~-~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
++ .+++++|+.++..+ .....+. .....++++.++++.+++. +..++++.+|||||||||+||||++.+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence 85 57888888776322 1111121 1223345678899999995 5679999999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~~ 177 (178)
++|||||||+|||+.++
T Consensus 411 ~illLDEPt~gLD~~~~ 427 (491)
T PRK10982 411 EILMLDEPTRGIDVGAK 427 (491)
T ss_pred CEEEEcCCCcccChhHH
Confidence 99999999999999865
No 265
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-33 Score=228.97 Aligned_cols=145 Identities=17% Similarity=0.127 Sum_probs=126.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| ..+|+|+||+||| ||++.+.|+.+ ++|+|+++|.++.. ...++++|+|+||
T Consensus 17 ~~~l~~isl~I~~Ge----~~~IvG~nGsGKS-------TLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q 84 (275)
T cd03289 17 NAVLENISFSISPGQ----RVGLLGRTGSGKS-------TLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQ 84 (275)
T ss_pred CcceeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECC
Confidence 469999999999999 8889999999999 99999999987 78999999998754 3567788999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCC-----------CChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGR-----------YSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .|+++|+..+. . ...+++.++++.+++.+..++++.. ||+|||||++|||||+.+
T Consensus 85 ~~~lf~-~tv~~nl~~~~---~----~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 85 KVFIFS-GTFRKNLDPYG---K----WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred Ccccch-hhHHHHhhhcc---C----CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 999887 49999996431 1 1235677888999998888888876 999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++++|||||++||+.++
T Consensus 157 p~illlDEpts~LD~~~~ 174 (275)
T cd03289 157 AKILLLDEPSAHLDPITY 174 (275)
T ss_pred CCEEEEECccccCCHHHH
Confidence 999999999999999754
No 266
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.4e-33 Score=253.10 Aligned_cols=154 Identities=19% Similarity=0.130 Sum_probs=125.2
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|.... .++|+|+|++|++|| +.+|+|.|||||| ||+|.+.|+..|++|+|.+||.++.+ ...+
T Consensus 479 f~y~~~~--~~vL~~isL~I~~Ge----~vaIvG~SGsGKS-------TL~KLL~gly~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 479 FRYGPDD--PPVLEDLSLEIPPGE----KVAIVGRSGSGKS-------TLLKLLLGLYKPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred EEeCCCC--cchhhceeEEeCCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEeHHhcCHHHH
Confidence 5564443 269999999999999 9999999999999 99999999999999999999999876 5678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----------cccCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----------YRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv 150 (178)
|+.||||+|++.+|. -|++||+.+.. +. ...+.+.++++..+..+ .....-..||||||||+
T Consensus 546 R~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~-~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrl 618 (709)
T COG2274 546 RRQVGYVLQDPFLFS-GSIRENIALGN-----PE-ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRL 618 (709)
T ss_pred HhheeEEcccchhhc-CcHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHH
Confidence 999999999988764 59999998632 11 11234555555544432 22334557999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+++|++|+||||||+||+.+.
T Consensus 619 alARaLl~~P~ILlLDEaTSaLD~~sE 645 (709)
T COG2274 619 ALARALLSKPKILLLDEATSALDPETE 645 (709)
T ss_pred HHHHHhccCCCEEEEeCcccccCHhHH
Confidence 999999999999999999999999764
No 267
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=248.59 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=127.2
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+.+ ..++|+|+|++|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ...+
T Consensus 349 f~y~~~--~~~il~~i~l~i~~G~----~~aIvG~sGsGKS-------TLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 415 (582)
T PRK11176 349 FTYPGK--EVPALRNINFKIPAGK----TVALVGRSGSGKS-------TIANLLTRFYDIDEGEILLDGHDLRDYTLASL 415 (582)
T ss_pred EecCCC--CCccccCceEEeCCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCceEEECCEEhhhcCHHHH
Confidence 566432 2479999999999999 8889999999999 99999999999999999999998876 4567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCcC----CCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRVS----GRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~~----~~LSgGqkQRv 150 (178)
++.|+||||++.+|+ -|++||+.++. +.....+++.++++.+++.+. .|..+ .+||||||||+
T Consensus 416 ~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi 489 (582)
T PRK11176 416 RNQVALVSQNVHLFN-DTIANNIAYAR-----TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489 (582)
T ss_pred HhhceEEccCceeec-chHHHHHhcCC-----CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHH
Confidence 889999999998875 69999997531 111234567777777775432 23323 56999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++++||||||+||+.+.
T Consensus 490 ~LARall~~~~ililDEptsaLD~~t~ 516 (582)
T PRK11176 490 AIARALLRDSPILILDEATSALDTESE 516 (582)
T ss_pred HHHHHHHhCCCEEEEECccccCCHHHH
Confidence 999999999999999999999999763
No 268
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.98 E-value=2e-33 Score=250.59 Aligned_cols=155 Identities=21% Similarity=0.166 Sum_probs=134.5
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccHHhhccceEE
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHLFQYLSGIGY 87 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~~~~~~~ig~ 87 (178)
|..++|+|||+++++|| +.+|+|+||+||| ||++.+.|..++. +|++.++|.++.. ...++.+||
T Consensus 36 ~~~~iL~~vs~~i~~Ge----~~aI~G~sGsGKS-------TLL~~L~g~~~~~~~~~G~i~~~g~~~~~-~~~~~~i~y 103 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGE----LLAVMGSSGAGKT-------TLMNALAFRSPKGVKGSGSVLLNGMPIDA-KEMRAISAY 103 (617)
T ss_pred CccccccCCEEEEeCCe----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcceeEEEECCEECCH-HHHhhhcee
Confidence 44679999999999999 7889999999999 9999999987764 7999999987753 456778999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCccccCcCC------CCChHHHHHHHHHHHHhC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSG------RYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~------~LSgGqkQRv~IAraL~~ 158 (178)
|+|++.+++.+||+||+.|....+. ...++.+++++++++.+++.+..|+.++ .|||||||||+||+||+.
T Consensus 104 v~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~ 183 (617)
T TIGR00955 104 VQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLT 183 (617)
T ss_pred eccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHc
Confidence 9999999999999999998776542 1223344578999999999988898887 499999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||+|||+.++
T Consensus 184 ~p~vlllDEPtsgLD~~~~ 202 (617)
T TIGR00955 184 DPPLLFCDEPTSGLDSFMA 202 (617)
T ss_pred CCCEEEeeCCCcchhHHHH
Confidence 9999999999999998753
No 269
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.98 E-value=1.9e-33 Score=254.02 Aligned_cols=153 Identities=17% Similarity=0.108 Sum_probs=126.0
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|+|+.+ .++|+||||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ..++
T Consensus 481 f~y~~~---~~iL~~isl~i~~G~----~vaIvG~SGsGKS-------TLlklL~gl~~p~~G~I~idg~~i~~~~~~~l 546 (708)
T TIGR01193 481 YSYGYG---SNILSDISLTIKMNS----KTTIVGMSGSGKS-------TLAKLLVGFFQARSGEILLNGFSLKDIDRHTL 546 (708)
T ss_pred EEcCCC---CcceeceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCcEEEECCEEHHHcCHHHH
Confidence 567432 479999999999999 8889999999999 99999999999999999999999876 4578
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv 150 (178)
|+.|+||||++.+|.. |++||+.++.. + ....+++.++++..++.+. .......||||||||+
T Consensus 547 r~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRi 620 (708)
T TIGR01193 547 RQFINYLPQEPYIFSG-SILENLLLGAK----E-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRI 620 (708)
T ss_pred HHheEEEecCceehhH-HHHHHHhccCC----C-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHH
Confidence 8999999999998765 99999986421 1 1223456666666665322 2233457999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+||||++.+|++|+||||||+||+.+
T Consensus 621 alARall~~p~iliLDE~Ts~LD~~t 646 (708)
T TIGR01193 621 ALARALLTDSKVLILDESTSNLDTIT 646 (708)
T ss_pred HHHHHHhhCCCEEEEeCccccCCHHH
Confidence 99999999999999999999999865
No 270
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=1.4e-33 Score=215.65 Aligned_cols=120 Identities=23% Similarity=0.180 Sum_probs=109.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc----HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH----LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~----~~~~~~~ig~v 88 (178)
.++++++||++++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ....++.++|+
T Consensus 13 ~~~l~~i~~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~ 81 (178)
T cd03229 13 KTVLNDVSLNIEAGE----IVALLGPSGSGKS-------TLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMV 81 (178)
T ss_pred eEEEeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEE
Confidence 469999999999999 7889999999999 99999999999999999999987754 23556789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
+|++.+++.+|+.|++.+. ||||||||++|||||+.+|++++||||
T Consensus 82 ~q~~~~~~~~t~~~~l~~~----------------------------------lS~G~~qr~~la~al~~~p~llilDEP 127 (178)
T cd03229 82 FQDFALFPHLTVLENIALG----------------------------------LSGGQQQRVALARALAMDPDVLLLDEP 127 (178)
T ss_pred ecCCccCCCCCHHHheeec----------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 9999988899999987542 999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 128 ~~~LD~~~~ 136 (178)
T cd03229 128 TSALDPITR 136 (178)
T ss_pred cccCCHHHH
Confidence 999998764
No 271
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.98 E-value=3.2e-33 Score=252.76 Aligned_cols=154 Identities=15% Similarity=0.077 Sum_probs=126.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~ 81 (178)
|.|++.. ..++|+|+||+|++|| ..+|+|+||+||| |+++.+.|+.+|++|+|.++|.++.+. ..+
T Consensus 486 f~Y~~~~-~~~vL~~isl~i~~Ge----~vaIvG~SGsGKS-------TLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l 553 (711)
T TIGR00958 486 FSYPNRP-DVPVLKGLTFTLHPGE----VVALVGPSGSGKS-------TVAALLQNLYQPTGGQVLLDGVPLVQYDHHYL 553 (711)
T ss_pred EECCCCC-CCccccCceEEEcCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 5675321 2479999999999999 8889999999999 999999999999999999999998764 567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cC----cCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HR----VSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~----~~~~LSgGqkQRv 150 (178)
++.|+||||++.+|. -|++||+.++. + ....+++.++++..++.+.. |. .-.+||||||||+
T Consensus 554 r~~i~~v~Q~~~lF~-gTIreNI~~g~-----~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRl 626 (711)
T TIGR00958 554 HRQVALVGQEPVLFS-GSVRENIAYGL-----T-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRI 626 (711)
T ss_pred HhhceEEecCccccc-cCHHHHHhcCC-----C-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHH
Confidence 889999999998865 69999997631 1 12245677777777764332 22 2357999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+||||++.+|+++|||||||+||+.+
T Consensus 627 alARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 627 AIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHHHHHhcCCCEEEEEccccccCHHH
Confidence 99999999999999999999999864
No 272
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.98 E-value=2.9e-33 Score=214.64 Aligned_cols=120 Identities=20% Similarity=0.220 Sum_probs=107.8
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQF 91 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q~ 91 (178)
++++|||++++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ...++.++|+||+
T Consensus 15 ~l~~vs~~i~~G~----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 83 (182)
T cd03215 15 AVRDVSFEVRAGE----IVGIAGLVGNGQT-------ELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPED 83 (182)
T ss_pred eecceEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCC
Confidence 8999999999999 7889999999999 999999999999999999999887643 2356789999998
Q ss_pred C---CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 92 N---GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 92 ~---~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
+ .+++.+|++||+.++.. ||+||||||+|||||+.+|++++||||
T Consensus 84 ~~~~~~~~~~t~~e~l~~~~~--------------------------------LS~G~~qrl~la~al~~~p~llllDEP 131 (182)
T cd03215 84 RKREGLVLDLSVAENIALSSL--------------------------------LSGGNQQKVVLARWLARDPRVLILDEP 131 (182)
T ss_pred cccCcccCCCcHHHHHHHHhh--------------------------------cCHHHHHHHHHHHHHccCCCEEEECCC
Confidence 5 57888999999876421 999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 132 ~~~LD~~~~ 140 (182)
T cd03215 132 TRGVDVGAK 140 (182)
T ss_pred CcCCCHHHH
Confidence 999999764
No 273
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.98 E-value=3e-33 Score=240.16 Aligned_cols=159 Identities=16% Similarity=0.075 Sum_probs=140.2
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cHHh-hcc
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HLFQ-YLS 83 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~~~-~~~ 83 (178)
.+.+|.++||++|||++++|| ..+++|.||+||| ||+|.+.|..+|++|+|+++|+... .+.+ ...
T Consensus 15 ~K~FggV~AL~~v~l~v~~GE----V~aL~GeNGAGKS-------TLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~ 83 (500)
T COG1129 15 SKSFGGVKALDGVSLTVRPGE----VHALLGENGAGKS-------TLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAA 83 (500)
T ss_pred eEEcCCceeeccceeEEeCce----EEEEecCCCCCHH-------HHHHHHhCcccCCCceEEECCEEccCCCHHHHHhC
Confidence 567888999999999999999 6779999999999 9999999999999999999999875 3443 457
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHH----hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSA----LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
+|+.|+|+.++.|++||.||+.+... ...+.+++.++++.++|+.+++....+.++.+||.||||.|+|||||..+
T Consensus 84 GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 84 GIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFD 163 (500)
T ss_pred CcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcC
Confidence 89999999999999999999976432 22345566778899999999996558999999999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~ 176 (178)
+++||||||||+|+...
T Consensus 164 arllIlDEPTaaLt~~E 180 (500)
T COG1129 164 ARVLILDEPTAALTVKE 180 (500)
T ss_pred CCEEEEcCCcccCCHHH
Confidence 99999999999998754
No 274
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.98 E-value=2e-33 Score=253.42 Aligned_cols=154 Identities=21% Similarity=0.196 Sum_probs=127.2
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+.+ ..++|+||||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ...+
T Consensus 471 f~Y~~~--~~~vL~~i~l~i~~G~----~iaIvG~sGsGKS-------TLlklL~gl~~p~~G~I~idg~~l~~~~~~~l 537 (694)
T TIGR03375 471 FAYPGQ--ETPALDNVSLTIRPGE----KVAIIGRIGSGKS-------TLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537 (694)
T ss_pred EEeCCC--CccceeeeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEEhhhCCHHHH
Confidence 566432 2469999999999999 8889999999999 99999999999999999999999875 4678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv 150 (178)
|+.|+||||++.+|. -|++||+.+.. + ....+++.++++..++.+..+ ..-..||||||||+
T Consensus 538 r~~i~~v~Q~~~lf~-~TI~eNi~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRl 610 (694)
T TIGR03375 538 RRNIGYVPQDPRLFY-GTLRDNIALGA-----P-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAV 610 (694)
T ss_pred HhccEEECCChhhhh-hhHHHHHhCCC-----C-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHH
Confidence 899999999998876 59999997631 1 123455677777776643322 23357999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++++||||||+||+.+.
T Consensus 611 alARall~~p~iliLDE~Ts~LD~~te 637 (694)
T TIGR03375 611 ALARALLRDPPILLLDEPTSAMDNRSE 637 (694)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 999999999999999999999999753
No 275
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.98 E-value=3.8e-33 Score=216.11 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=111.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--CcccccccccccccccHHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
.++|+++||+|+.|| +.+|+|+||+||| ||++.+.|+. +|++|++.++|+++... .+++.++|+||
T Consensus 22 ~~~l~~~~~~i~~Ge----~~~l~G~nGsGKS-------tLl~~i~Gl~~~~~~~G~i~~~g~~~~~~-~~~~~i~~~~q 89 (194)
T cd03213 22 KQLLKNVSGKAKPGE----LTAIMGPSGAGKS-------TLLNALAGRRTGLGVSGEVLINGRPLDKR-SFRKIIGYVPQ 89 (194)
T ss_pred ccceecceEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCceEEEECCEeCchH-hhhheEEEccC
Confidence 479999999999999 7889999999999 9999999999 99999999999987643 55678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++.+|+.||+.+..... +|||||||||+|||||+.+|++++|||||+
T Consensus 90 ~~~~~~~~t~~~~i~~~~~~~-----------------------------~LS~G~~qrv~laral~~~p~illlDEP~~ 140 (194)
T cd03213 90 DDILHPTLTVRETLMFAAKLR-----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTS 140 (194)
T ss_pred cccCCCCCcHHHHHHHHHHhc-----------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 999999999999987542110 899999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 141 ~LD~~~~ 147 (194)
T cd03213 141 GLDSSSA 147 (194)
T ss_pred CCCHHHH
Confidence 9998764
No 276
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.98 E-value=4.5e-33 Score=217.28 Aligned_cols=138 Identities=18% Similarity=0.102 Sum_probs=116.1
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++++++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..+.++.++|+||+
T Consensus 22 ~~l~~isl~i~~G~----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 90 (207)
T cd03369 22 PVLKNVSFKVKAGE----KIGIVGRTGAGKS-------TLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD 90 (207)
T ss_pred ccccCceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecC
Confidence 69999999999999 8889999999999 99999999999999999999987643 33456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++ .|+++|+.++. .. ..+.+.+.++ .++++.+|||||||||+|||||+.+|+++||||||+|
T Consensus 91 ~~~~~-~tv~~~l~~~~---~~----~~~~~~~~l~-------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 155 (207)
T cd03369 91 PTLFS-GTIRSNLDPFD---EY----SDEEIYGALR-------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155 (207)
T ss_pred CcccC-ccHHHHhcccC---CC----CHHHHHHHhh-------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccc
Confidence 98776 59999986431 11 1223344443 3678899999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 156 LD~~~~ 161 (207)
T cd03369 156 IDYATD 161 (207)
T ss_pred CCHHHH
Confidence 999754
No 277
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.98 E-value=4e-33 Score=225.62 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=123.7
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
..++|++|||+|.+|| ..+|+|+||+||| ||++++.|+.+|++|++.++|. +++++|.
T Consensus 36 ~~~il~~is~~i~~Ge----~~~liG~NGsGKS-------TLlk~L~Gl~~p~~G~I~~~g~-----------~~~~~~~ 93 (264)
T PRK13546 36 TFFALDDISLKAYEGD----VIGLVGINGSGKS-------TLSNIIGGSLSPTVGKVDRNGE-----------VSVIAIS 93 (264)
T ss_pred ceEEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCceEEEECCE-----------EeEEecc
Confidence 3579999999999999 7889999999999 9999999999999999988874 4677788
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+.+.+|+.+|+.+.....+....+..+.+.++++.+++.+..++.+.+||+||+|||+|||||+.+|++|||||||+|
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~g 173 (264)
T PRK13546 94 AGLSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSV 173 (264)
T ss_pred cCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcccc
Confidence 77778899999998654443333333344567788899999889999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 174 LD~~~~ 179 (264)
T PRK13546 174 GDQTFA 179 (264)
T ss_pred CCHHHH
Confidence 998653
No 278
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=3.1e-33 Score=216.20 Aligned_cols=123 Identities=18% Similarity=0.158 Sum_probs=109.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--CcccccccccccccccHHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
.++|++|||++++|| +.+|+|+||+||| ||++.+.|+. +|++|++.++|+++. ...++.++|++|
T Consensus 20 ~~~l~~vs~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~G~~~~~~~~G~i~~~g~~~~--~~~~~~i~~~~q 86 (192)
T cd03232 20 RQLLNNISGYVKPGT----LTALMGESGAGKT-------TLLDVLAGRKTAGVITGEILINGRPLD--KNFQRSTGYVEQ 86 (192)
T ss_pred eEeEEccEEEEeCCc----EEEEECCCCCCHH-------HHHHHHhCCCcCCCcceEEEECCEehH--HHhhhceEEecc
Confidence 469999999999999 8889999999999 9999999975 489999999998775 455678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++.+|++||+.+.... + +|||||||||+|||||+.+|+++++||||+
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~----------------~-------------~LSgGe~qrv~la~al~~~p~vlllDEP~~ 137 (192)
T cd03232 87 QDVHSPNLTVREALRFSALL----------------R-------------GLSVEQRKRLTIGVELAAKPSILFLDEPTS 137 (192)
T ss_pred cCccccCCcHHHHHHHHHHH----------------h-------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCc
Confidence 99999999999999764210 0 899999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 138 ~LD~~~~ 144 (192)
T cd03232 138 GLDSQAA 144 (192)
T ss_pred CCCHHHH
Confidence 9998764
No 279
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.98 E-value=5.9e-33 Score=221.88 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=122.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--CcccccccccccccccH--Hh-hccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQAAQNSLLMTNIMHL--FQ-YLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~g~i~~~g~~~~~~--~~-~~~~ig~ 87 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++++.|+. +|++|++.++|.++... .. .++.++|
T Consensus 14 ~~~l~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (248)
T PRK09580 14 KAILRGLNLEVRPGE----VHAIMGPNGSGKS-------TLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFM 82 (248)
T ss_pred eeeeecceeEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEE
Confidence 469999999999999 8889999999999 9999999994 69999999999877542 22 2357999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHH-hc---CC---CCCChhHHHHHHHHHcCCC-ccccCcCC-CCChHHHHHHHHHHHHhC
Q psy860 88 CPQFNGINEHLTAQEMLECFSA-LR---GI---PGVKSGPIIDYWIDLLGLT-EYRHRVSG-RYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~-~~---~~---~~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGqkQRv~IAraL~~ 158 (178)
++|++.+++.+++.++..+... .. .. ......+.++++++.+++. +..++.+. +|||||||||+|||||+.
T Consensus 83 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (248)
T PRK09580 83 AFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVL 162 (248)
T ss_pred EecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999988887777665543211 11 10 1112234567888999995 56677775 799999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++|+|||||+|||+.++
T Consensus 163 ~p~illLDEPt~~LD~~~~ 181 (248)
T PRK09580 163 EPELCILDESDSGLDIDAL 181 (248)
T ss_pred CCCEEEEeCCCccCCHHHH
Confidence 9999999999999999754
No 280
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.98 E-value=3.4e-33 Score=246.66 Aligned_cols=155 Identities=17% Similarity=0.102 Sum_probs=127.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~ 81 (178)
|+|++.- .++|+|+||+|++|| ..+|.|+||+||| ||++.+.|+.+|++|+|.++|.++.+. .++
T Consensus 338 f~y~~~~--~~il~~inl~i~~G~----~v~IvG~sGsGKS-------TLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~ 404 (571)
T TIGR02203 338 FRYPGRD--RPALDSISLVIEPGE----TVALVGRSGSGKS-------TLVNLIPRFYEPDSGQILLDGHDLADYTLASL 404 (571)
T ss_pred EEcCCCC--CccccCeeEEecCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCCeEEECCEeHHhcCHHHH
Confidence 5664321 369999999999999 8889999999999 999999999999999999999988653 567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-------c----CCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-------V----SGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~----~~~LSgGqkQRv 150 (178)
++.++||||++.+|. -|++||+.++. ++....+++.++++.+++.+..++ . -..||||||||+
T Consensus 405 ~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRi 478 (571)
T TIGR02203 405 RRQVALVSQDVVLFN-DTIANNIAYGR-----TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRL 478 (571)
T ss_pred HhhceEEccCccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 889999999998765 59999997541 112335567778888777543322 2 246999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+||||++.+|++++||||||+||+.+.
T Consensus 479 aLARall~~~~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 479 AIARALLKDAPILILDEATSALDNESE 505 (571)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 999999999999999999999998764
No 281
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.98 E-value=9.8e-33 Score=243.60 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=122.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|+.|| +.+|+|+||+||| ||++++.|+.+|++|+|.+++. ..+|||||++
T Consensus 20 ~~il~~vs~~i~~Ge----~~~iiG~NGsGKS-------TLlk~i~G~~~p~~G~i~~~~~---------~~i~~v~Q~~ 79 (556)
T PRK11819 20 KQILKDISLSFFPGA----KIGVLGLNGAGKS-------TLLRIMAGVDKEFEGEARPAPG---------IKVGYLPQEP 79 (556)
T ss_pred CeeeeCceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEecCC---------CEEEEEecCC
Confidence 579999999999999 8889999999999 9999999999999999977542 3699999999
Q ss_pred CCCCCCCHHHHHHHHHH-h-------------cCCCC----------------------CChhHHHHHHHHHcCCCcccc
Q psy860 93 GINEHLTAQEMLECFSA-L-------------RGIPG----------------------VKSGPIIDYWIDLLGLTEYRH 136 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~-~-------------~~~~~----------------------~~~~~~~~~~l~~~~L~~~~~ 136 (178)
.+++.+|+.|++.+... . ..... .+..+++.++++.+++.. .+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-~~ 158 (556)
T PRK11819 80 QLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP-WD 158 (556)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc-cc
Confidence 99999999999976321 0 01110 112456788999999964 78
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 137 ~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+++.+|||||||||+|||||+.+|++||||||||+||+.++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~ 199 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESV 199 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHH
Confidence 99999999999999999999999999999999999999764
No 282
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.4e-33 Score=238.54 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=131.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~ 81 (178)
|.|++|. ++++|+||++++|+ ..+|+|+|||||| |++..+.|+.+|+.|++.++|.+..++ ..+
T Consensus 328 ~~y~~g~---~~l~~l~~t~~~g~----~talvG~SGaGKS-------TLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~ 393 (559)
T COG4988 328 FRYPDGK---PALSDLNLTIKAGQ----LTALVGASGAGKS-------TLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW 393 (559)
T ss_pred EecCCCC---cccCCceeEecCCc----EEEEECCCCCCHH-------HHHHHHhCcCCCCCceEEECCccccccCHHHH
Confidence 6677776 89999999999999 8889999999999 999999999999999999999998875 568
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc------cCcCCC----CChHHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR------HRVSGR----YSGGNKRKLS 151 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~------~~~~~~----LSgGqkQRv~ 151 (178)
|++++||+|+|.+++ -|++||+.++. ....++.+.++++..++.+.. |..+++ |||||+|||+
T Consensus 394 ~k~i~~v~Q~p~lf~-gTireNi~l~~------~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRla 466 (559)
T COG4988 394 RKQISWVSQNPYLFA-GTIRENILLAR------PDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLA 466 (559)
T ss_pred HhHeeeeCCCCcccc-ccHHHHhhccC------CcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHH
Confidence 899999999999875 49999998742 123356688888888876443 334554 9999999999
Q ss_pred HHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 152 TAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 152 IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+||||..++++++|||||++||.++.
T Consensus 467 LARAll~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 467 LARALLSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred HHHHhcCCCCEEEecCCccCCCHhHH
Confidence 99999999999999999999998763
No 283
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.97 E-value=4e-33 Score=203.72 Aligned_cols=131 Identities=24% Similarity=0.284 Sum_probs=118.5
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCCCC
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQFNG 93 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~~~ 93 (178)
|+||||+|++|| ..+|+|+||+||| ||++.+.|..+|++|.+.+++.++.. ....++.++|++|++.
T Consensus 1 L~~v~~~i~~g~----~~~i~G~nGsGKS-------tLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~ 69 (137)
T PF00005_consen 1 LKNVSLEIKPGE----IVAIVGPNGSGKS-------TLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQ 69 (137)
T ss_dssp EEEEEEEEETTS----EEEEEESTTSSHH-------HHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHC
T ss_pred CCceEEEEcCCC----EEEEEccCCCccc-------cceeeecccccccccccccccccccccccccccccccccccccc
Confidence 689999999999 8889999999999 99999999999999999999999876 4566789999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcC----CCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS----GRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~----~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
+++.+|+.++ ...++++++++.+++.+..++.+ .+||+||||||+||+||+.+|++++|||||
T Consensus 70 ~~~~~tv~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt 136 (137)
T PF00005_consen 70 LFPGLTVREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPT 136 (137)
T ss_dssp HHTTSBHHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTT
T ss_pred cccccccccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 9999999998 23456888899998877666666 999999999999999999999999999999
Q ss_pred C
Q psy860 170 S 170 (178)
Q Consensus 170 ~ 170 (178)
|
T Consensus 137 ~ 137 (137)
T PF00005_consen 137 N 137 (137)
T ss_dssp T
T ss_pred C
Confidence 7
No 284
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.97 E-value=3.4e-33 Score=213.43 Aligned_cols=118 Identities=21% Similarity=0.137 Sum_probs=106.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-HhhccceEEecCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-FQYLSGIGYCPQFN 92 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-~~~~~~ig~v~Q~~ 92 (178)
++++++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ..+++.++|+||++
T Consensus 16 ~~l~~i~~~i~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~ 84 (178)
T cd03247 16 QVLKNLSLELKQGE----KIALLGRSGSGKS-------TLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRP 84 (178)
T ss_pred cceEEEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCC
Confidence 69999999999999 7889999999999 999999999999999999999876543 34567899999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++ .|++||+ +.+||+|||||++|||||+.+|++++|||||+||
T Consensus 85 ~~~~-~tv~~~i----------------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~L 129 (178)
T cd03247 85 YLFD-TTLRNNL----------------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGL 129 (178)
T ss_pred eeec-ccHHHhh----------------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 8775 6898886 6889999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 130 D~~~~ 134 (178)
T cd03247 130 DPITE 134 (178)
T ss_pred CHHHH
Confidence 98754
No 285
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-32 Score=242.09 Aligned_cols=145 Identities=16% Similarity=0.078 Sum_probs=122.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|+.|| +.+|+|+||+||| ||++++.|+.+|++|++.+++. ..++|+||++
T Consensus 14 ~~il~~vsl~i~~Ge----~~~liG~NGsGKS-------TLl~~l~Gl~~p~~G~i~~~~~---------~~i~~~~q~~ 73 (530)
T PRK15064 14 KPLFENISVKFGGGN----RYGLIGANGCGKS-------TFMKILGGDLEPSAGNVSLDPN---------ERLGKLRQDQ 73 (530)
T ss_pred cEeEeCCEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEecCC---------CEEEEEeccC
Confidence 479999999999999 8889999999999 9999999999999999988763 3599999999
Q ss_pred CCCCCCCHHHHHHHHHH-----------hcCC---------------------CCCChhHHHHHHHHHcCCCcc-ccCcC
Q psy860 93 GINEHLTAQEMLECFSA-----------LRGI---------------------PGVKSGPIIDYWIDLLGLTEY-RHRVS 139 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~-----------~~~~---------------------~~~~~~~~~~~~l~~~~L~~~-~~~~~ 139 (178)
.+++.+|+.|++.+... .... ...+.++++.++++.+++.+. .++++
T Consensus 74 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 153 (530)
T PRK15064 74 FAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLM 153 (530)
T ss_pred CcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCch
Confidence 88899999999875321 0000 011224567889999999764 45789
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 140 GRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 140 ~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 154 ~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~ 191 (530)
T PRK15064 154 SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTI 191 (530)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHH
Confidence 99999999999999999999999999999999999764
No 286
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.97 E-value=8.5e-33 Score=244.33 Aligned_cols=153 Identities=18% Similarity=0.116 Sum_probs=125.0
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+++ .++|+||||++++|| ..||+|++||||| |+++.+.|+..|++|+|.+||.++.+ ...+
T Consensus 336 f~y~~~---~~vl~~is~~i~~Ge----~vaiVG~sGsGKS-------Tl~~LL~r~~~~~~G~I~idg~dI~~i~~~~l 401 (567)
T COG1132 336 FSYPGK---KPVLKDISFSIEPGE----KVAIVGPSGSGKS-------TLIKLLLRLYDPTSGEILIDGIDIRDISLDSL 401 (567)
T ss_pred EEcCCC---CccccCceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhccCCCCCCeEEECCEehhhcCHHHH
Confidence 556542 379999999999999 8889999999999 99999999999999999999999986 4678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-------ccccCcC----CCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-------EYRHRVS----GRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-------~~~~~~~----~~LSgGqkQRv 150 (178)
|+.|++|||++.+|. -|++||+.++... ...+++.++++..++. +..|..+ ..||||||||+
T Consensus 402 r~~I~~V~Qd~~LF~-~TI~~NI~~g~~~------at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrl 474 (567)
T COG1132 402 RKRIGIVSQDPLLFS-GTIRENIALGRPD------ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRL 474 (567)
T ss_pred HHhccEEcccceeec-ccHHHHHhcCCCC------CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHH
Confidence 999999999999887 7999999874211 1233455554444322 2234444 47999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+||||++.+|++|+||||||+||+.+.
T Consensus 475 aiARall~~~~ILILDEaTSalD~~tE 501 (567)
T COG1132 475 AIARALLRNPPILILDEATSALDTETE 501 (567)
T ss_pred HHHHHHhcCCCEEEEeccccccCHHhH
Confidence 999999999999999999999999763
No 287
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=5.6e-33 Score=244.49 Aligned_cols=147 Identities=23% Similarity=0.191 Sum_probs=121.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+|+||++++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++.+ ...+++.++||||
T Consensus 331 ~~~l~~~~~~i~~G~----~~~ivG~sGsGKS-------TL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 399 (544)
T TIGR01842 331 KPTLRGISFRLQAGE----ALAIIGPSGSGKS-------TLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399 (544)
T ss_pred ccccccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecC
Confidence 478999999999999 8889999999999 99999999999999999999998865 3567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHH---------HHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDY---------WIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++. |++||+.++. + ....+++.+ .++.+ |++........+||||||||++||||++.+
T Consensus 400 ~~~lf~~-ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 400 DVELFPG-TVAENIARFG-----E-NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred Ccccccc-cHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 9998865 9999997532 1 111222333 33444 444445556788999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++++||||||+||+.++
T Consensus 473 ~~ililDEpts~LD~~~~ 490 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGE 490 (544)
T ss_pred CCEEEEeCCccccCHHHH
Confidence 999999999999998753
No 288
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.97 E-value=4.4e-33 Score=242.34 Aligned_cols=154 Identities=14% Similarity=0.141 Sum_probs=123.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-cccccccccccccc---HHhhccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQNSLLMTNIMH---LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i~~~g~~~~~---~~~~~~~ig~v 88 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.++ ++|+|+++|+++.. ....+++++|+
T Consensus 273 ~~il~~vsl~i~~Ge----~~~i~G~NGsGKS-------TLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 341 (490)
T PRK10938 273 RPILHNLSWQVNPGE----HWQIVGPNGAGKS-------TLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYV 341 (490)
T ss_pred eeEEeeceEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEE
Confidence 468999999999999 8889999999999 999999998775 69999999976521 23456789999
Q ss_pred cCCCCCCCC--CCHHHHHHHHHHh----cCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 89 PQFNGINEH--LTAQEMLECFSAL----RGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 89 ~Q~~~l~~~--ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+|++.+++. .++.+++.+.... ......+.+++++++++.+++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 342 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~ 421 (490)
T PRK10938 342 SSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPT 421 (490)
T ss_pred CHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 998765443 4676665432110 11011123456889999999987 8899999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|||||||+|||+.++
T Consensus 422 lllLDEPt~gLD~~~~ 437 (490)
T PRK10938 422 LLILDEPLQGLDPLNR 437 (490)
T ss_pred EEEEcCccccCCHHHH
Confidence 9999999999999764
No 289
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.97 E-value=5.8e-33 Score=211.36 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=105.1
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++++++||+|.+|| +.+|.|+||+||| ||++.+.|+.+|++|++.++|.++.. ...+++.++|++|+
T Consensus 16 ~~l~~~~~~i~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 84 (173)
T cd03246 16 PVLRNVSFSIEPGE----SLAIIGPSGSGKS-------TLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQD 84 (173)
T ss_pred cceeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCC
Confidence 59999999999999 7889999999999 99999999999999999999987754 33556789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++ .|++||+ ||||||||++|||||+.+|+++||||||+|
T Consensus 85 ~~~~~-~tv~~~l-------------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~ 126 (173)
T cd03246 85 DELFS-GSIAENI-------------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSH 126 (173)
T ss_pred Ccccc-CcHHHHC-------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccc
Confidence 98776 4999886 999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 127 LD~~~~ 132 (173)
T cd03246 127 LDVEGE 132 (173)
T ss_pred cCHHHH
Confidence 999764
No 290
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.97 E-value=5.7e-33 Score=246.36 Aligned_cols=153 Identities=15% Similarity=0.121 Sum_probs=124.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~ 81 (178)
|.|+.+ .++|+|||+++++|| ..+|+|+||+||| ||++.+.|+.+|++|.+.++|.++.+. ..+
T Consensus 342 f~y~~~---~~iL~~inl~i~~G~----~v~IvG~sGsGKS-------TLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~ 407 (588)
T PRK13657 342 FSYDNS---RQGVEDVSFEAKPGQ----TVAIVGPTGAGKS-------TLINLLQRVFDPQSGRILIDGTDIRTVTRASL 407 (588)
T ss_pred EEeCCC---CceecceeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCEEEECCEEhhhCCHHHH
Confidence 566432 369999999999999 8889999999999 999999999999999999999988763 567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------cc----CcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RH----RVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~----~~~~~LSgGqkQRv 150 (178)
|+.|+||||++.++. -|++||+.++. + ....+++.++++.+++.+. .| .....||||||||+
T Consensus 408 r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~-----~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRi 480 (588)
T PRK13657 408 RRNIAVVFQDAGLFN-RSIEDNIRVGR-----P-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480 (588)
T ss_pred HhheEEEecCccccc-ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHH
Confidence 889999999999875 59999997631 1 1123445666666665322 22 23346999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++++||||||+||+.+.
T Consensus 481 alARall~~~~iliLDEpts~LD~~t~ 507 (588)
T PRK13657 481 AIARALLKDPPILILDEATSALDVETE 507 (588)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 999999999999999999999998753
No 291
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=5.4e-33 Score=216.42 Aligned_cols=134 Identities=20% Similarity=0.105 Sum_probs=111.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
++|+++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++| +|+|+||++.
T Consensus 19 ~il~~~s~~i~~G~----~~~i~G~nG~GKS-------TLl~~i~G~~~~~~G~i~~~g-----------~i~~~~q~~~ 76 (204)
T cd03250 19 FTLKDINLEVPKGE----LVAIVGPVGSGKS-------SLLSALLGELEKLSGSVSVPG-----------SIAYVSQEPW 76 (204)
T ss_pred ceeeeeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhCcCCCCCCeEEEcC-----------EEEEEecCch
Confidence 69999999999999 7889999999999 999999999999999999887 5999999998
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-----------CCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-----------LTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
++ +.|++||+.+.... . .+...+.++.++ +....++.+.+||+|||||++|||||+.+|++
T Consensus 77 l~-~~t~~enl~~~~~~---~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l 148 (204)
T cd03250 77 IQ-NGTIRENILFGKPF---D----EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI 148 (204)
T ss_pred hc-cCcHHHHhccCCCc---C----HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 77 57999999763211 1 112223333333 33345667899999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
++|||||+|||+.++
T Consensus 149 lllDEP~~~LD~~~~ 163 (204)
T cd03250 149 YLLDDPLSAVDAHVG 163 (204)
T ss_pred EEEeCccccCCHHHH
Confidence 999999999999753
No 292
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=2e-32 Score=241.46 Aligned_cols=144 Identities=16% Similarity=0.131 Sum_probs=120.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|+|.+++ +..||||||++
T Consensus 18 ~~il~~is~~i~~Ge----~~~liG~NGsGKS-------TLl~~i~G~~~p~~G~i~~~~---------~~~i~~v~Q~~ 77 (552)
T TIGR03719 18 KEILKDISLSFFPGA----KIGVLGLNGAGKS-------TLLRIMAGVDKEFNGEARPAP---------GIKVGYLPQEP 77 (552)
T ss_pred CeeecCceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEecC---------CCEEEEEeccC
Confidence 469999999999999 8889999999999 999999999999999997764 23699999999
Q ss_pred CCCCCCCHHHHHHHHHH-h-------------cCCCCCC----------------------hhHHHHHHHHHcCCCcccc
Q psy860 93 GINEHLTAQEMLECFSA-L-------------RGIPGVK----------------------SGPIIDYWIDLLGLTEYRH 136 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~-~-------------~~~~~~~----------------------~~~~~~~~l~~~~L~~~~~ 136 (178)
.+++++|+.|++.+... . ...+..+ ..+++.++++.+++.. .+
T Consensus 78 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~ 156 (552)
T TIGR03719 78 QLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP-WD 156 (552)
T ss_pred CCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc-cc
Confidence 99999999999986321 0 0111111 1235667788888854 68
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 137 ~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~ 197 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESV 197 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHH
Confidence 89999999999999999999999999999999999999764
No 293
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=1e-32 Score=208.94 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=102.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+++||+|.+|| +.+|.|+||+||| ||++.+.|+.+|++|++.+++. +.++|++|++
T Consensus 14 ~~~l~~i~l~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~q~~ 73 (166)
T cd03223 14 RVLLKDLSFEIKPGD----RLLITGPSGTGKS-------SLFRALAGLWPWGSGRIGMPEG---------EDLLFLPQRP 73 (166)
T ss_pred CeeeecCeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCC---------ceEEEECCCC
Confidence 369999999999999 8889999999999 9999999999999999988763 4799999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.++ ..|+.||+.+. .+.+||||||||++|||||+.+|++++|||||++|
T Consensus 74 ~~~-~~tv~~nl~~~------------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~L 122 (166)
T cd03223 74 YLP-LGTLREQLIYP------------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSAL 122 (166)
T ss_pred ccc-cccHHHHhhcc------------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCcccc
Confidence 764 67999998642 36889999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 123 D~~~~ 127 (166)
T cd03223 123 DEESE 127 (166)
T ss_pred CHHHH
Confidence 99764
No 294
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=1.6e-32 Score=261.81 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=132.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC---cccccccccccccccHHhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP---FQAAQNSLLMTNIMHLFQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~---~~~g~i~~~g~~~~~~~~~~~~ig~v~ 89 (178)
.++|+|||+++++|| +.+|+|+||+||| ||++.+.|..+ +++|+|.++|+++.. +.++.+|||+
T Consensus 776 ~~iL~~vs~~i~~Ge----~~aI~G~sGaGKS-------TLL~~Lag~~~~g~~~~G~I~i~G~~~~~--~~~~~i~yv~ 842 (1394)
T TIGR00956 776 RVILNNVDGWVKPGT----LTALMGASGAGKT-------TLLNVLAERVTTGVITGGDRLVNGRPLDS--SFQRSIGYVQ 842 (1394)
T ss_pred cEeeeCCEEEEECCE----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcceeEEEECCEECCh--hhhcceeeec
Confidence 579999999999999 8889999999999 99999999976 788999999988742 4677899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCccccCcCC----CCChHHHHHHHHHHHHhCCCC-
Q psy860 90 QFNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSG----RYSGGNKRKLSTAMALIGDRD- 161 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~----~LSgGqkQRv~IAraL~~~P~- 161 (178)
|++.+++.+||+|++.+....+. .+..+..++++++++.+++.+.+|+.++ .|||||||||+||+||+.+|+
T Consensus 843 Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~ 922 (1394)
T TIGR00956 843 QQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKL 922 (1394)
T ss_pred ccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCe
Confidence 99888899999999998765542 1222334578899999999999999887 799999999999999999997
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|+|||||||||+.++
T Consensus 923 iLlLDEPTsgLD~~~~ 938 (1394)
T TIGR00956 923 LLFLDEPTSGLDSQTA 938 (1394)
T ss_pred EEEEcCCCCCCCHHHH
Confidence 9999999999998653
No 295
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=1.2e-32 Score=263.19 Aligned_cols=155 Identities=15% Similarity=0.150 Sum_probs=127.9
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--------------------
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-------------------- 63 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-------------------- 63 (178)
|.|+++- ..++|+||||+|++|+ ..||+|++||||| |+++.+.|+..|
T Consensus 1173 F~Y~~~~-~~~vL~~lsl~i~~G~----~vAIVG~SGsGKS-------Tl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265 1173 FRYISRP-NVPIYKDLTFSCDSKK----TTAIVGETGSGKS-------TVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred EECCCCC-CCccccCeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHHHhCCCcccccccccccccccccccc
Confidence 6786432 2479999999999999 8899999999999 999999999887
Q ss_pred ----------------------------------cccccccccccccc--HHhhccceEEecCCCCCCCCCCHHHHHHHH
Q psy860 64 ----------------------------------QAAQNSLLMTNIMH--LFQYLSGIGYCPQFNGINEHLTAQEMLECF 107 (178)
Q Consensus 64 ----------------------------------~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~ 107 (178)
++|+|.++|.++.+ ...+|+.|+||+|++.+| +.|++||+.++
T Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g 1319 (1466)
T PTZ00265 1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFG 1319 (1466)
T ss_pred ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcC
Confidence 69999999999976 467899999999999986 67999999874
Q ss_pred HHhcCCCCCChhHHHHHHHHHcCCCc-------cccCcC----CCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 108 SALRGIPGVKSGPIIDYWIDLLGLTE-------YRHRVS----GRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~l~~~~L~~-------~~~~~~----~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
. + ....+.+.++++..++.+ ..|..+ ..||||||||++|||||+.+|++||||||||+||+.+
T Consensus 1320 ~-----~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~s 1393 (1466)
T PTZ00265 1320 K-----E-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393 (1466)
T ss_pred C-----C-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 1 1 123455777777766543 223333 4699999999999999999999999999999999876
Q ss_pred C
Q psy860 177 T 177 (178)
Q Consensus 177 ~ 177 (178)
.
T Consensus 1394 E 1394 (1466)
T PTZ00265 1394 E 1394 (1466)
T ss_pred H
Confidence 3
No 296
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.97 E-value=2.7e-32 Score=239.50 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=121.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|+.|| +.+|+|+||+||| ||++++.|+.+|++|.|.+++. +.+||+||++
T Consensus 332 ~~~l~~is~~i~~Ge----~~~l~G~NGsGKS-------TLl~~i~G~~~p~~G~i~~~~~---------~~i~~~~q~~ 391 (530)
T PRK15064 332 GPLFKNLNLLLEAGE----RLAIIGENGVGKT-------TLLRTLVGELEPDSGTVKWSEN---------ANIGYYAQDH 391 (530)
T ss_pred ceeecCcEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCc---------eEEEEEcccc
Confidence 469999999999999 7889999999999 9999999999999999987763 3699999986
Q ss_pred C--CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 93 G--INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 93 ~--l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
. +++.+|+.+++.++. . ..+..+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 392 ~~~~~~~~t~~~~~~~~~---~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt 466 (530)
T PRK15064 392 AYDFENDLTLFDWMSQWR---Q--EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPT 466 (530)
T ss_pred cccCCCCCcHHHHHHHhc---c--CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 4 566799999886431 1 122345688999999995 6789999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 467 ~~LD~~~~ 474 (530)
T PRK15064 467 NHMDMESI 474 (530)
T ss_pred CCCCHHHH
Confidence 99999764
No 297
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.97 E-value=1.8e-32 Score=242.33 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=125.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+.+- ..++|+|+||++++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++.+ ...+
T Consensus 345 f~y~~~~-~~~iL~~inl~i~~Ge----~i~IvG~sGsGKS-------TLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~ 412 (576)
T TIGR02204 345 FAYPARP-DQPALDGLNLTVRPGE----TVALVGPSGAGKS-------TLFQLLLRFYDPQSGRILLDGVDLRQLDPAEL 412 (576)
T ss_pred EECCCCC-CCccccceeEEecCCC----EEEEECCCCCCHH-------HHHHHHHhccCCCCCEEEECCEEHHhcCHHHH
Confidence 5564321 1469999999999999 8889999999999 99999999999999999999998875 4567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-----------cCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-----------HRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv 150 (178)
++.++|+||++.++ +-|++||+.++. + ....+++.++++.+++.+.. ......||||||||+
T Consensus 413 ~~~i~~~~Q~~~lf-~~Ti~~Ni~~~~-----~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl 485 (576)
T TIGR02204 413 RARMALVPQDPVLF-AASVMENIRYGR-----P-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRI 485 (576)
T ss_pred HHhceEEccCCccc-cccHHHHHhcCC-----C-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHH
Confidence 88999999999876 459999997631 1 12245566777776654222 223456999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+||||++.+|++++||||||+||+.++
T Consensus 486 ~laRal~~~~~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 486 AIARAILKDAPILLLDEATSALDAESE 512 (576)
T ss_pred HHHHHHHhCCCeEEEeCcccccCHHHH
Confidence 999999999999999999999999763
No 298
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=6.6e-33 Score=211.62 Aligned_cols=154 Identities=23% Similarity=0.186 Sum_probs=135.5
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc-cccccHHh---hccce
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM-TNIMHLFQ---YLSGI 85 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g-~~~~~~~~---~~~~i 85 (178)
+|.-.|++++||.|..|| ..+|+||||+||+ |++-.+.|..+|+.|+++++| .++....+ .|.+|
T Consensus 15 F~GF~Aln~ls~~v~~Ge----lr~lIGpNGAGKT-------T~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 15 FGGFKALNDLSFSVDPGE----LRVLIGPNGAGKT-------TLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred EcceeeeeeeEEEecCCe----EEEEECCCCCCce-------eeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 344589999999999999 8889999999999 999999999999999999999 67766433 46789
Q ss_pred EEecCCCCCCCCCCHHHHHHHHH--------HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860 86 GYCPQFNGINEHLTAQEMLECFS--------ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~~--------~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
|--||.|.+|+++||+||+.... .++.....+.+++++++|+..+|.+.+++.+..||.||||++.|++.++
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~ 163 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLA 163 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeec
Confidence 99999999999999999998743 2333334556778999999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~ 174 (178)
++|++|++|||++|+--
T Consensus 164 Q~P~lLLlDEPvAGMTd 180 (249)
T COG4674 164 QDPKLLLLDEPVAGMTD 180 (249)
T ss_pred cCCcEEEecCccCCCcH
Confidence 99999999999999843
No 299
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.97 E-value=1.8e-32 Score=242.49 Aligned_cols=154 Identities=17% Similarity=0.128 Sum_probs=124.9
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+.+ ..++|+++||++++|| ..+|+|+||+||| ||++.+.|+.+|++|++.++|.++.+ ...+
T Consensus 321 ~~y~~~--~~~~l~~i~~~i~~G~----~~~ivG~sGsGKS-------TLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~ 387 (569)
T PRK10789 321 FTYPQT--DHPALENVNFTLKPGQ----MLGICGPTGSGKS-------TLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSW 387 (569)
T ss_pred EECCCC--CCccccCeeEEECCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCCCEEEECCEEHhhCCHHHH
Confidence 456432 2469999999999999 8889999999999 99999999999999999999998765 4567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----------cccCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----------YRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv 150 (178)
|+.++|+||++.++.. |++||+.++. + ....+++.++++..++.+ ..+.....||||||||+
T Consensus 388 ~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi 460 (569)
T PRK10789 388 RSRLAVVSQTPFLFSD-TVANNIALGR-----P-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRI 460 (569)
T ss_pred HhheEEEccCCeeccc-cHHHHHhcCC-----C-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHH
Confidence 8899999999998864 9999997631 1 112344556666665532 22344567999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++++||||||+||+.+.
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~ 487 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTE 487 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHH
Confidence 999999999999999999999998753
No 300
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.7e-33 Score=218.77 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=131.4
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--H-HhhccceEEe
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--L-FQYLSGIGYC 88 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~-~~~~~~ig~v 88 (178)
..++|++||++|+.|| =++|+|+||+||| ||++.+.+-.+|++|.+.+.|+.... . .++|++||+|
T Consensus 43 gk~iL~~isW~V~~ge----~W~I~G~NGsGKT-------TLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~v 111 (257)
T COG1119 43 GKKILGDLSWQVNPGE----HWAIVGPNGAGKT-------TLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV 111 (257)
T ss_pred CEeeccccceeecCCC----cEEEECCCCCCHH-------HHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCcc
Confidence 3689999999999999 6779999999999 99999999999999999999998753 3 7899999999
Q ss_pred cCC--CCCCCCCCHHHHHHH--HHHhcC---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 89 PQF--NGINEHLTAQEMLEC--FSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 89 ~Q~--~~l~~~ltv~e~l~~--~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
... ..+.++.+|+|.+.- +..+.. ....+..+++..+++.+++.+.++++..+||-||||||.|||||+.+|+
T Consensus 112 S~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~ 191 (257)
T COG1119 112 SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPE 191 (257)
T ss_pred CHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCC
Confidence 864 345567788887753 322221 1223445678899999999999999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|||||||+|||..++
T Consensus 192 LLiLDEP~~GLDl~~r 207 (257)
T COG1119 192 LLILDEPAQGLDLIAR 207 (257)
T ss_pred EEEecCccccCChHHH
Confidence 9999999999998765
No 301
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.97 E-value=3.5e-32 Score=240.10 Aligned_cols=144 Identities=11% Similarity=0.091 Sum_probs=122.0
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
..++|+||||+|..|| +.+|+|+||+||| ||++.+.|+.+|++|+|++++ +. .+||+||+
T Consensus 336 ~~~~l~~isl~i~~Ge----~~~l~G~NGsGKS-------TLl~~i~G~~~p~~G~i~~~~-~~--------~i~~v~q~ 395 (556)
T PRK11819 336 DRLLIDDLSFSLPPGG----IVGIIGPNGAGKS-------TLFKMITGQEQPDSGTIKIGE-TV--------KLAYVDQS 395 (556)
T ss_pred CeeeecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECC-ce--------EEEEEeCc
Confidence 3469999999999999 7889999999999 999999999999999998743 21 59999999
Q ss_pred C-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 92 N-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 92 ~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
+ .+++.+|+.|++.+......... ....+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 396 ~~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 473 (556)
T PRK11819 396 RDALDPNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPT 473 (556)
T ss_pred hhhcCCCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 6 68889999999987543222211 1234567899999974 679999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 474 ~~LD~~~~ 481 (556)
T PRK11819 474 NDLDVETL 481 (556)
T ss_pred CCCCHHHH
Confidence 99999764
No 302
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.97 E-value=4e-32 Score=225.93 Aligned_cols=152 Identities=18% Similarity=0.174 Sum_probs=134.0
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----HhhccceE
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYLSGIG 86 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~~~ig 86 (178)
...|+++|||+++.||. .+|+|.+||||| |+-..++++.+++ |+|.++|+++... ..+|+.+-
T Consensus 299 ~~~AVd~isl~L~~gqT----lGlVGESGSGKs-------TlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQ 366 (534)
T COG4172 299 HLRAVDGISLTLRRGQT----LGLVGESGSGKS-------TLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQ 366 (534)
T ss_pred heEEeccceeEecCCCe----EEEEecCCCCcc-------hHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhce
Confidence 35799999999999994 559999999999 8888999998876 9999999998753 45788999
Q ss_pred EecCCC--CCCCCCCHHHHHHHHHHhcC--CCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 87 YCPQFN--GINEHLTAQEMLECFSALRG--IPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 87 ~v~Q~~--~l~~~ltv~e~l~~~~~~~~--~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+|||+| .+.|.+||.+.+........ .+..+..+++.++|+.+||+ +..+++|+++|||||||++||||++.+|+
T Consensus 367 vVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~ 446 (534)
T COG4172 367 VVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPE 446 (534)
T ss_pred EEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCc
Confidence 999998 59999999999988766643 45556667899999999997 67899999999999999999999999999
Q ss_pred eEEeeCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLY 175 (178)
Q Consensus 162 ~lllDEPt~gLD~~ 175 (178)
+++||||||+||..
T Consensus 447 ~i~LDEPTSALD~S 460 (534)
T COG4172 447 LILLDEPTSALDRS 460 (534)
T ss_pred EEEecCCchHhhHH
Confidence 99999999999965
No 303
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.97 E-value=1.9e-32 Score=208.16 Aligned_cols=115 Identities=20% Similarity=0.194 Sum_probs=104.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
+++++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|+++.. ...+++.++|+||+
T Consensus 16 ~~l~~i~~~i~~G~----~~~l~G~nGsGKs-------tLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~ 84 (171)
T cd03228 16 PVLKDVSLTIKPGE----KVAIVGPSGSGKS-------TLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQD 84 (171)
T ss_pred ccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCC
Confidence 68999999999999 7889999999999 99999999999999999999987754 23456789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+++ .|+.||+ ||+||||||+|||||+.+|++++|||||+|
T Consensus 85 ~~~~~-~t~~e~l-------------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~g 126 (171)
T cd03228 85 PFLFS-GTIRENI-------------------------------------LSGGQRQRIAIARALLRDPPILILDEATSA 126 (171)
T ss_pred chhcc-chHHHHh-------------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcC
Confidence 87765 5888886 999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 127 LD~~~~ 132 (171)
T cd03228 127 LDPETE 132 (171)
T ss_pred CCHHHH
Confidence 998764
No 304
>KOG0059|consensus
Probab=99.97 E-value=1.7e-32 Score=252.55 Aligned_cols=153 Identities=29% Similarity=0.445 Sum_probs=143.9
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEecCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCPQF 91 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~Q~ 91 (178)
|++++|+.|+.|| +-++.|+||+||| |+++++.|..+|++|++++.|.++.. ..+.++.+|||||.
T Consensus 580 Av~~ls~~V~~ge----cfgLLG~NGAGKt-------T~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~ 648 (885)
T KOG0059|consen 580 AVRGLSFAVPPGE----CFGLLGVNGAGKT-------TTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQF 648 (885)
T ss_pred hhcceEEEecCCc----eEEEecCCCCCch-------hhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCch
Confidence 8999999999999 4459999999999 88999999999999999999998864 23478899999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
..+.+.+|.+|++.++++.+|++..+.++.+++.++.+++.++++++++.+|||||+|+++|.|++.+|++++|||||+|
T Consensus 649 d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstG 728 (885)
T KOG0059|consen 649 DALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTG 728 (885)
T ss_pred hhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCC
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 172 QNLYNTT 178 (178)
Q Consensus 172 LD~~~~~ 178 (178)
+||.+||
T Consensus 729 mDP~arr 735 (885)
T KOG0059|consen 729 LDPKARR 735 (885)
T ss_pred CCHHHHH
Confidence 9998875
No 305
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=4.7e-32 Score=218.28 Aligned_cols=146 Identities=12% Similarity=0.033 Sum_probs=118.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++.. ..++++.++|+||
T Consensus 34 ~~il~~isl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q 102 (257)
T cd03288 34 KPVLKHVKAYIKPGQ----KVGICGRTGSGKS-------SLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQ 102 (257)
T ss_pred CcceeEEEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECC
Confidence 369999999999999 8889999999999 99999999999999999999988754 3456778999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHH---------HHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDY---------WIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~---------~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .|+++|+.... ....+.+.+ +++.+ ++....++.+.+||+|||||++|||||+.+
T Consensus 103 ~~~l~~-~tv~~nl~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 103 DPILFS-GSIRFNLDPEC-------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred CCcccc-cHHHHhcCcCC-------CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 998776 59998874311 001122233 33333 455555667789999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|+++||||||+|||+.++
T Consensus 175 p~llllDEPt~gLD~~~~ 192 (257)
T cd03288 175 SSILIMDEATASIDMATE 192 (257)
T ss_pred CCEEEEeCCccCCCHHHH
Confidence 999999999999999753
No 306
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.97 E-value=7.8e-33 Score=211.90 Aligned_cols=120 Identities=20% Similarity=0.240 Sum_probs=107.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+++||++.+|| ..+|.|+||+||| ||++.+.|+.+|++|++.++|.++.. ..++++.++|+||
T Consensus 12 ~~~l~~~~~~i~~G~----~~~l~G~nGsGKS-------tLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q 80 (180)
T cd03214 12 RTVLDDLSLSIEAGE----IVGILGPNGAGKS-------TLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80 (180)
T ss_pred eeeEeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHH
Confidence 469999999999999 7889999999999 99999999999999999999987753 2345567888888
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
+++.+++.+..++.+.+||+|||||++|||||+.+|++++|||||+
T Consensus 81 ----------------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 126 (180)
T cd03214 81 ----------------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTS 126 (180)
T ss_pred ----------------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 6778888877888999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 127 ~LD~~~~ 133 (180)
T cd03214 127 HLDIAHQ 133 (180)
T ss_pred CCCHHHH
Confidence 9998764
No 307
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.97 E-value=2.9e-32 Score=231.11 Aligned_cols=158 Identities=14% Similarity=0.016 Sum_probs=139.7
Q ss_pred hccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cHH-hhccc
Q psy860 8 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HLF-QYLSG 84 (178)
Q Consensus 8 ~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~~-~~~~~ 84 (178)
+.+|.+.|.+||||+|++|| +-||+|.||+||| ||++++.|+.+|++|+|.++|+++. .+. ..+.+
T Consensus 12 K~f~~~~And~V~l~v~~Ge----IHaLLGENGAGKS-------TLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 12 KRFPGVVANDDVSLSVKKGE----IHALLGENGAGKS-------TLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred EEcCCEEecCceeeeecCCc----EEEEeccCCCCHH-------HHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 45566799999999999999 6779999999999 9999999999999999999999864 444 45789
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHHHh---cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 85 IGYCPQFNGINEHLTAQEMLECFSAL---RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 85 ig~v~Q~~~l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
||+|+|++.+++++||.||+.+...- ......+.+++++++.+.+|+.-..++++.+||=|+||||.|-+||..+|+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~ 160 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGAR 160 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCC
Confidence 99999999999999999999885432 234455677889999999999988899999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYN 176 (178)
Q Consensus 162 ~lllDEPt~gLD~~~ 176 (178)
+|||||||+-|-|..
T Consensus 161 iLILDEPTaVLTP~E 175 (501)
T COG3845 161 LLILDEPTAVLTPQE 175 (501)
T ss_pred EEEEcCCcccCCHHH
Confidence 999999999987753
No 308
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.97 E-value=2.8e-32 Score=246.04 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=125.4
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+++. .++|+|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ..++
T Consensus 463 f~y~~~~--~~il~~i~l~i~~G~----~vaivG~sGsGKS-------TL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~ 529 (694)
T TIGR01846 463 FRYAPDS--PEVLSNLNLDIKPGE----FIGIVGPSGSGKS-------TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWL 529 (694)
T ss_pred EEcCCCC--ccccccceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECCEehhhCCHHHH
Confidence 5664332 368999999999999 8889999999999 99999999999999999999999876 4577
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----------cccCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----------YRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv 150 (178)
|+.++||||++.+++ -|++||+.+.. + ....+.+.++++..++.+ .......+||||||||+
T Consensus 530 r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri 602 (694)
T TIGR01846 530 RRQMGVVLQENVLFS-RSIRDNIALCN-----P-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRI 602 (694)
T ss_pred HHhCeEEccCCeehh-hhHHHHHhcCC-----C-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHH
Confidence 889999999998775 59999997631 1 122344555566555432 23344568999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|+++|||||||+||+.+.
T Consensus 603 ~lARall~~~~ililDEpts~LD~~~~ 629 (694)
T TIGR01846 603 AIARALVGNPRILIFDEATSALDYESE 629 (694)
T ss_pred HHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 999999999999999999999998753
No 309
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.97 E-value=5.1e-32 Score=238.87 Aligned_cols=143 Identities=10% Similarity=0.101 Sum_probs=121.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|.|++++ +. .|||+||++
T Consensus 335 ~~~l~~isl~i~~Ge----~~~l~G~NGsGKS-------TLl~~l~G~~~p~~G~i~~~~-~~--------~i~~v~q~~ 394 (552)
T TIGR03719 335 KLLIDDLSFKLPPGG----IVGVIGPNGAGKS-------TLFRMITGQEQPDSGTIKIGE-TV--------KLAYVDQSR 394 (552)
T ss_pred eeeeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCeEEEECC-ce--------EEEEEeCCc
Confidence 469999999999999 8889999999999 999999999999999998743 21 599999996
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 93 -GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 93 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
.+++.+|+.|++.+......... ....+.++++.+++.+ ..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 395 ~~~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~ 472 (552)
T TIGR03719 395 DALDPNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTN 472 (552)
T ss_pred cccCCCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 47888999999987543222221 1234667899999974 5799999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 473 ~LD~~~~ 479 (552)
T TIGR03719 473 DLDVETL 479 (552)
T ss_pred CCCHHHH
Confidence 9998764
No 310
>KOG0057|consensus
Probab=99.97 E-value=2.5e-32 Score=233.68 Aligned_cols=144 Identities=19% Similarity=0.126 Sum_probs=121.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++|++|||+|++|| -+||+|.|||||| |+++.+.++.. .+|.|.+||.++.. ...+|+-||||||+
T Consensus 366 ~iL~gvsf~I~kGe----kVaIvG~nGsGKS-------Tilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd 433 (591)
T KOG0057|consen 366 KVLKGVSFTIPKGE----KVAIVGSNGSGKS-------TILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQD 433 (591)
T ss_pred ceecceeEEecCCC----EEEEECCCCCCHH-------HHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCc
Confidence 69999999999999 7889999999999 99999999988 99999999999976 46789999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHHHHHHHHhCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
..+| +-|+.+|+.+.. + ....+++.++.++.++.+.-. .+-..|||||||||+||||++.+|
T Consensus 434 ~~LF-ndTIl~NI~YGn-----~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 434 SVLF-NDTILYNIKYGN-----P-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred cccc-chhHHHHhhcCC-----C-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 8876 569999997532 1 223456777778877754222 234469999999999999999999
Q ss_pred CeEEeeCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~ 176 (178)
++++||||||.||-.+
T Consensus 507 ~Il~~DEaTS~LD~~T 522 (591)
T KOG0057|consen 507 PILLLDEATSALDSET 522 (591)
T ss_pred CeEEecCcccccchhh
Confidence 9999999999999765
No 311
>PRK13409 putative ATPase RIL; Provisional
Probab=99.97 E-value=7.3e-32 Score=239.13 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=120.3
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
.|+++||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|++.++ ..++|+||++.+
T Consensus 354 ~l~~~s~~i~~Ge----iv~l~G~NGsGKS-------TLlk~L~Gl~~p~~G~I~~~-----------~~i~y~~Q~~~~ 411 (590)
T PRK13409 354 SLEVEGGEIYEGE----VIGIVGPNGIGKT-------TFAKLLAGVLKPDEGEVDPE-----------LKISYKPQYIKP 411 (590)
T ss_pred EEEecceEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEEe-----------eeEEEecccccC
Confidence 4899999999999 7889999999999 99999999999999999764 159999999888
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
++++||.|++.+..... . ....+.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 412 ~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~ 486 (590)
T PRK13409 412 DYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 486 (590)
T ss_pred CCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 88999999998642211 1 123578899999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q psy860 175 YNT 177 (178)
Q Consensus 175 ~~~ 177 (178)
.++
T Consensus 487 ~~~ 489 (590)
T PRK13409 487 EQR 489 (590)
T ss_pred HHH
Confidence 764
No 312
>KOG0055|consensus
Probab=99.97 E-value=4e-32 Score=249.79 Aligned_cols=155 Identities=20% Similarity=0.137 Sum_probs=130.0
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.||++- ..++|+|+|++|++|+ -.||+||+||||| |++..+-++..|++|.|.+||.++++ ++.+
T Consensus 995 F~YPsRP-~~~Il~~l~l~i~~Gq----TvALVG~SGsGKS-------TvI~LLeRfYdp~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen 995 FAYPTRP-DVPVLNNLSLSIRAGQ----TVALVGPSGSGKS-------TVISLLERFYDPDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred eeCCCCC-CchhhcCCcEEecCCC----EEEEECCCCCCHH-------HHHHHHHHhcCCCCCeEEECCcccccCCHHHH
Confidence 7897655 4589999999999999 8899999999999 88899999999999999999999986 5778
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-------CCCccccCcCC----CCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-------GLTEYRHRVSG----RYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~L~~~~~~~~~----~LSgGqkQRv 150 (178)
|++||.|.|+|.|| +-|++||+.++ . .. ...+.+.++++.. +|++.-|..++ +||||||||+
T Consensus 1063 R~~i~lVsQEP~LF-~~TIrENI~YG--~---~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRI 1135 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLF-NGTIRENIAYG--S---EE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRI 1135 (1228)
T ss_pred HHhcceeccCchhh-cccHHHHHhcc--C---CC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHH
Confidence 99999999999986 57999999876 1 11 2234455555543 34555555554 8999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+||||++.||++|+|||.||+||.++.
T Consensus 1136 AIARAilRnPkILLLDEATSALDseSE 1162 (1228)
T KOG0055|consen 1136 AIARAILRNPKILLLDEATSALDSESE 1162 (1228)
T ss_pred HHHHHHHcCCCeeeeeccchhhhhhhH
Confidence 999999999999999999999998764
No 313
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.97 E-value=8.4e-32 Score=238.93 Aligned_cols=153 Identities=15% Similarity=0.090 Sum_probs=122.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+++ .++++|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ...+
T Consensus 342 ~~y~~~---~~~l~~i~~~i~~G~----~~~ivG~sGsGKS-------TL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 407 (585)
T TIGR01192 342 FEFANS---SQGVFDVSFEAKAGQ----TVAIVGPTGAGKT-------TLINLLQRVYDPTVGQILIDGIDINTVTRESL 407 (585)
T ss_pred EECCCC---CccccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHccCCCCCCCEEEECCEEhhhCCHHHH
Confidence 456432 368999999999999 8889999999999 99999999999999999999998765 3567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHc-----------CCCccccCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL-----------GLTEYRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv 150 (178)
++.++||||++.++. .|++||+.++. +. ...+.+.++++.. |++.........||||||||+
T Consensus 408 ~~~i~~v~q~~~lf~-~ti~~Ni~~~~-----~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl 480 (585)
T TIGR01192 408 RKSIATVFQDAGLFN-RSIRENIRLGR-----EG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRL 480 (585)
T ss_pred HhheEEEccCCccCc-ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHH
Confidence 889999999998875 69999997642 11 1122233333333 333334456778999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||+.+|++++||||||+||+.++
T Consensus 481 ~lARall~~p~ililDEpts~LD~~~~ 507 (585)
T TIGR01192 481 AIARAILKNAPILVLDEATSALDVETE 507 (585)
T ss_pred HHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 999999999999999999999998754
No 314
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=8.1e-32 Score=211.61 Aligned_cols=139 Identities=14% Similarity=0.045 Sum_probs=114.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccc-ccccccccHHhhccceEEecCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNS-LLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~-~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
++|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|++|++. +++..+ .+.+.+
T Consensus 1 ~vl~~vs~~i~~Ge----~~~l~G~NGsGKS-------TLlk~i~Gl~~~~sG~i~~~~~~~~-----------~~~~~~ 58 (213)
T PRK15177 1 VVLDKTDFVMGYHE----HIGILAAPGSGKT-------TLTRLLCGLDAPDEGDFIGLRGDAL-----------PLGANS 58 (213)
T ss_pred CeeeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCccCCCCCEEEecCcee-----------cccccc
Confidence 47999999999999 8889999999999 999999999999999985 555422 123456
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.||+.++....+.. ..+....+.+.+++.+..++++.+||+|||||++|||||+.+|+++||||||+++
T Consensus 59 ~l~~~ltv~enl~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~l 135 (213)
T PRK15177 59 FILPGLTGEENARMMASLYGLD---GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTG 135 (213)
T ss_pred ccCCcCcHHHHHHHHHHHcCCC---HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccC
Confidence 7888999999999876554432 1222334456678888889999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 136 D~~~~ 140 (213)
T PRK15177 136 DNATQ 140 (213)
T ss_pred CHHHH
Confidence 98753
No 315
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=5.5e-32 Score=234.56 Aligned_cols=143 Identities=18% Similarity=0.153 Sum_probs=120.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|+ +.+|+|+||+||| ||++++.|+.+|++|+|.++|.+. ++.+.+
T Consensus 37 ~~IL~nVSfsI~~GE----ivgIiGpNGSGKS-------TLLkiLaGLl~P~sGeI~I~G~~~-----------~i~~~~ 94 (549)
T PRK13545 37 HYALNNISFEVPEGE----IVGIIGLNGSGKS-------TLSNLIAGVTMPNKGTVDIKGSAA-----------LIAISS 94 (549)
T ss_pred ceEEeeeEEEEeCCC----EEEEEcCCCCCHH-------HHHHHHhCCCCCCceEEEECCEee-----------eEEecc
Confidence 368999999999999 8889999999999 999999999999999999988641 122234
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+.+.+|++|++.+.....+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||+||
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 56677899999987544333333334456778999999998899999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 175 D~~sr 179 (549)
T PRK13545 175 DQTFT 179 (549)
T ss_pred CHHHH
Confidence 99753
No 316
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.97 E-value=3.3e-32 Score=239.78 Aligned_cols=149 Identities=16% Similarity=0.078 Sum_probs=123.0
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+.+ .++|+|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ...+
T Consensus 330 f~y~~~---~~~l~~i~~~i~~G~----~~aivG~sGsGKS-------TL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~ 395 (547)
T PRK10522 330 FAYQDN---GFSVGPINLTIKRGE----LLFLIGGNGSGKS-------TLAMLLTGLYQPQSGEILLDGKPVTAEQPEDY 395 (547)
T ss_pred EEeCCC---CeEEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEECCCCCHHHH
Confidence 566532 369999999999999 8889999999999 99999999999999999999998875 4577
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCc-----CCCCChHHHHHHHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV-----SGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGqkQRv~IAraL 156 (178)
++.++||||++.+++ .|+++| + .....+.+.++++.+++....+.. -.+||||||||++||||+
T Consensus 396 ~~~i~~v~q~~~lf~-~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal 464 (547)
T PRK10522 396 RKLFSAVFTDFHLFD-QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLAL 464 (547)
T ss_pred hhheEEEecChhHHH-Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHH
Confidence 889999999988765 356655 1 122345677888888886543221 358999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCCCCC
Q psy860 157 IGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 157 ~~~P~~lllDEPt~gLD~~~~ 177 (178)
+.+|++|+||||||+||+.+.
T Consensus 465 ~~~~~ililDE~ts~LD~~~~ 485 (547)
T PRK10522 465 AEERDILLLDEWAADQDPHFR 485 (547)
T ss_pred hcCCCEEEEECCCCCCCHHHH
Confidence 999999999999999998753
No 317
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.97 E-value=6.5e-32 Score=242.38 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=119.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+|+||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|++.+++ ++.++||||++
T Consensus 465 ~~il~~isl~i~~Ge----~~~IvG~nGsGKS-------TLl~lL~Gl~~~~~G~i~~~~---------~~~i~~v~Q~~ 524 (659)
T TIGR00954 465 DVLIESLSFEVPSGN----HLLICGPNGCGKS-------SLFRILGELWPVYGGRLTKPA---------KGKLFYVPQRP 524 (659)
T ss_pred CeeeecceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEeecC---------CCcEEEECCCC
Confidence 369999999999999 7889999999999 999999999999999987643 45799999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCC-CCCChhHHHHHHHHHcCCCccccCcC---------CCCChHHHHHHHHHHHHhCCCCe
Q psy860 93 GINEHLTAQEMLECFSALRGI-PGVKSGPIIDYWIDLLGLTEYRHRVS---------GRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~-~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
.+++. |++||+.+....... ......+++.++++.+++.+..+++. .+||||||||++|||||+++|++
T Consensus 525 ~l~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i 603 (659)
T TIGR00954 525 YMTLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF 603 (659)
T ss_pred CCCCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE
Confidence 88776 999999764221111 11123456788999999987666543 78999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
+||||||++||+.++
T Consensus 604 llLDEpts~LD~~~~ 618 (659)
T TIGR00954 604 AILDECTSAVSVDVE 618 (659)
T ss_pred EEEeCCccCCCHHHH
Confidence 999999999998753
No 318
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=1.2e-31 Score=216.09 Aligned_cols=146 Identities=16% Similarity=0.141 Sum_probs=122.1
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccc-----------ccccccccHH-hh
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNS-----------LLMTNIMHLF-QY 81 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~-----------~~g~~~~~~~-~~ 81 (178)
.+++|||+ +++|| +.+|+|+||+||| ||++.+.|+.+|++|+++ ++|.++.... +.
T Consensus 15 ~~l~~i~~-i~~Ge----~~~IvG~nGsGKS-------TLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 15 FKLHRLPV-PREGQ----VLGLVGPNGIGKS-------TALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred hhhhcCCC-CCCCC----EEEEECCCCCCHH-------HHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 69999995 99999 7889999999999 999999999999999995 7787765432 22
Q ss_pred c---cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 82 L---SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 82 ~---~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+ ..++|++|+..+++. ++.+++.... ......+.+.++++.+++.+..++.+.+||+|||||++|||||+.
T Consensus 83 ~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPK-AVKGKVGELL-----KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred hhcccceeeecchhccCch-HHHHHHHHHh-----chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 2 247899999877774 7777766532 122345678899999999988899999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++++|||||++||+.++
T Consensus 157 ~p~illlDEPts~LD~~~~ 175 (255)
T cd03236 157 DADFYFFDEPSSYLDIKQR 175 (255)
T ss_pred CCCEEEEECCCCCCCHHHH
Confidence 9999999999999999753
No 319
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.97 E-value=9.2e-32 Score=209.21 Aligned_cols=123 Identities=19% Similarity=0.175 Sum_probs=106.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccHH--h-hccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHLF--Q-YLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~~--~-~~~~ig~ 87 (178)
.++++++||++.+|| +.+|+|+||+||| ||++.+.|+ .+|++|++.++|.++.... . .+.+++|
T Consensus 13 ~~~l~~is~~i~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (200)
T cd03217 13 KEILKGVNLTIKKGE----VHALMGPNGSGKS-------TLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL 81 (200)
T ss_pred EEeeeccceEECCCc----EEEEECCCCCCHH-------HHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE
Confidence 469999999999999 8889999999999 999999999 4799999999999876532 2 2456999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++.+++..++.+++ ++...+|||||||||+|||||+.+|++++|||
T Consensus 82 v~q~~~~~~~~~~~~~l-------------------------------~~~~~~LS~G~~qrv~laral~~~p~illlDE 130 (200)
T cd03217 82 AFQYPPEIPGVKNADFL-------------------------------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDE 130 (200)
T ss_pred eecChhhccCccHHHHH-------------------------------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 99999888888887765 12236899999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 131 Pt~~LD~~~~ 140 (200)
T cd03217 131 PDSGLDIDAL 140 (200)
T ss_pred CCccCCHHHH
Confidence 9999998754
No 320
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.97 E-value=9.7e-32 Score=257.01 Aligned_cols=161 Identities=16% Similarity=0.088 Sum_probs=128.2
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccc-cccccc--HHh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLL-MTNIMH--LFQ 80 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~-g~~~~~--~~~ 80 (178)
|.|+.+. ..++|+||||+|++|| ..+|+|+|||||| ||++.+.|+.+|++|+|.++ |.++.+ ...
T Consensus 390 f~Y~~~~-~~~vL~~isl~i~~Ge----~vaIvG~SGsGKS-------TLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~ 457 (1466)
T PTZ00265 390 FHYDTRK-DVEIYKDLNFTLTEGK----TYAFVGESGCGKS-------TILKLIERLYDPTEGDIIINDSHNLKDINLKW 457 (1466)
T ss_pred EEcCCCC-CCceeccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHHHhccCCCCeEEEeCCcchhhCCHHH
Confidence 5675321 2469999999999999 8889999999999 99999999999999999994 577654 456
Q ss_pred hccceEEecCCCCCCCCCCHHHHHHHHHHh-cC---------C-------------------------------------
Q psy860 81 YLSGIGYCPQFNGINEHLTAQEMLECFSAL-RG---------I------------------------------------- 113 (178)
Q Consensus 81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~-~~---------~------------------------------------- 113 (178)
+|+.||||+|++.+|+ .|++||+.+.... .. .
T Consensus 458 lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 536 (1466)
T PTZ00265 458 WRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIE 536 (1466)
T ss_pred HHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhh
Confidence 7889999999999886 5999999874210 00 0
Q ss_pred ----CCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 114 ----PGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 114 ----~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
......+.+.++++.+++.+. ..+...+||||||||++|||||+.+|++||||||||+||+.++
T Consensus 537 ~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 537 MRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred cccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 001123467777788877543 2456788999999999999999999999999999999998753
No 321
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.97 E-value=5.1e-32 Score=216.18 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=107.3
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
+..|++||||+|.+|| ..+|+|.|||||| |+-+.++|+.+|++|+|+++|+++..+.
T Consensus 25 ~v~avd~Vsf~i~~ge----~~glVGESG~GKS-------Tlgr~i~~L~~pt~G~i~f~g~~i~~~~------------ 81 (268)
T COG4608 25 YVKAVDGVSFSIKEGE----TLGLVGESGCGKS-------TLGRLILGLEEPTSGEILFEGKDITKLS------------ 81 (268)
T ss_pred ceEEecceeEEEcCCC----EEEEEecCCCCHH-------HHHHHHHcCcCCCCceEEEcCcchhhcc------------
Confidence 4689999999999999 5559999999999 9999999999999999999998754432
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
..+..+++.++|+.+|+. +..++++++|||||+||+.|||||+.+|+++++|||||
T Consensus 82 -----------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvS 138 (268)
T COG4608 82 -----------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS 138 (268)
T ss_pred -----------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchh
Confidence 234456799999999997 68899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||...+
T Consensus 139 aLDvSiq 145 (268)
T COG4608 139 ALDVSVQ 145 (268)
T ss_pred hcchhHH
Confidence 9998654
No 322
>PLN03232 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.6e-31 Score=256.56 Aligned_cols=152 Identities=15% Similarity=0.160 Sum_probs=127.3
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|.++ ..++|+||||+|++|| ..+|+|++|+||| ||++.+.|+.+|++|+|.+||.++.+ ..++
T Consensus 1242 f~Y~~~--~~~vL~~isl~I~~Ge----kvaIVG~SGSGKS-------TL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1242 LRYRPG--LPPVLHGLSFFVSPSE----KVGVVGRTGAGKS-------SMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred EEECCC--CCcccccceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 566433 2369999999999999 8889999999999 99999999999999999999999876 4678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv 150 (178)
|++|+||||++.+|.. |++||+..+. ....+++.++++..++.+..+ ..-.+||||||||+
T Consensus 1309 R~~i~iVpQdp~LF~g-TIr~NL~~~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1380 (1495)
T PLN03232 1309 RRVLSIIPQSPVLFSG-TVRFNIDPFS-------EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLL 1380 (1495)
T ss_pred HhhcEEECCCCeeeCc-cHHHHcCCCC-------CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHH
Confidence 9999999999998875 9999997531 123456777777777654322 22357999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+|++|+||||||+||+.+
T Consensus 1381 aLARALLr~~~ILILDEATSaLD~~T 1406 (1495)
T PLN03232 1381 SLARALLRRSKILVLDEATASVDVRT 1406 (1495)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHH
Confidence 99999999999999999999999865
No 323
>PLN03130 ABC transporter C family member; Provisional
Probab=99.97 E-value=1.3e-31 Score=258.14 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=127.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|.++. .++|+||||+|++|| ..+|+|++|+||| ||++.+.|+.+|++|+|.+||.++.+ ..++
T Consensus 1245 f~Y~~~~--~~VL~~is~~I~~Ge----kVaIVGrSGSGKS-------TLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130 1245 LRYRPEL--PPVLHGLSFEISPSE----KVGIVGRTGAGKS-------SMLNALFRIVELERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred EEeCCCC--CceecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCcCCCCCceEEECCEecccCCHHHH
Confidence 5674432 369999999999999 8889999999999 99999999999999999999999976 5688
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cC----cCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HR----VSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~----~~~~LSgGqkQRv 150 (178)
|++|++|||++.+|.. |+++|+..+. ....+.+.++++..++.+.. |. .-.+||||||||+
T Consensus 1312 R~~IsiVpQdp~LF~G-TIreNLd~~~-------~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrl 1383 (1622)
T PLN03130 1312 RKVLGIIPQAPVLFSG-TVRFNLDPFN-------EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLL 1383 (1622)
T ss_pred HhccEEECCCCccccc-cHHHHhCcCC-------CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHH
Confidence 9999999999998875 9999997531 12345677777777664332 22 2347999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+|++||||||||+||+.+
T Consensus 1384 aLARALLr~p~ILILDEATSaLD~~T 1409 (1622)
T PLN03130 1384 SLARALLRRSKILVLDEATAAVDVRT 1409 (1622)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 99999999999999999999999865
No 324
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.97 E-value=1.1e-31 Score=237.00 Aligned_cols=153 Identities=11% Similarity=-0.051 Sum_probs=125.4
Q ss_pred hhhhhccC-ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHh
Q psy860 4 FQYLSGIG-YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQ 80 (178)
Q Consensus 4 ~~~~~~~~-~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~ 80 (178)
|.|+...+ ..++|+|+||++++|| ..+|+|+||+||| |+++.+.|+.+|++|+|.++|.++.+ ..+
T Consensus 345 f~y~~~~~~~~~~l~~vs~~i~~G~----~~aivG~sGsGKS-------Tl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~ 413 (555)
T TIGR01194 345 MNPKAPEGSEGFALGPIDLRIAQGD----IVFIVGENGCGKS-------TLAKLFCGLYIPQEGEILLDGAAVSADSRDD 413 (555)
T ss_pred EEeCCCCCCcCceeccceEEEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHH
Confidence 55643222 1359999999999999 8889999999999 99999999999999999999999875 356
Q ss_pred hccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCc------CCCCChHHHHHHHHHH
Q psy860 81 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV------SGRYSGGNKRKLSTAM 154 (178)
Q Consensus 81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LSgGqkQRv~IAr 154 (178)
+++.++||+|++.+|.. |+++|. ......+++.++++.+++.+..++. ...||||||||++|||
T Consensus 414 ~~~~i~~v~q~~~lf~~-ti~~n~---------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaR 483 (555)
T TIGR01194 414 YRDLFSAIFADFHLFDD-LIGPDE---------GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALIC 483 (555)
T ss_pred HHhhCcEEccChhhhhh-hhhccc---------ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHH
Confidence 78899999999887654 666663 1123355678889999987654432 3579999999999999
Q ss_pred HHhCCCCeEEeeCCCCCCCCCCC
Q psy860 155 ALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 155 aL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|++.+|+++|||||||+||+.++
T Consensus 484 all~~~~ililDE~ts~LD~~~~ 506 (555)
T TIGR01194 484 AWLEDRPILLFDEWAADQDPAFK 506 (555)
T ss_pred HHHcCCCEEEEeCCccCCCHHHH
Confidence 99999999999999999999764
No 325
>PLN03140 ABC transporter G family member; Provisional
Probab=99.97 E-value=3e-31 Score=253.18 Aligned_cols=153 Identities=16% Similarity=0.189 Sum_probs=129.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--cccccccccccccccHHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--FQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
..+|+|||+++++|| +.+|+|+||+||| ||++.+.|..+ +.+|++.++|.+... ...++.+|||+|
T Consensus 893 ~~iL~~vs~~i~~Ge----l~aL~G~sGaGKT-------TLL~~LaG~~~~g~~~G~I~inG~~~~~-~~~~~~igyv~Q 960 (1470)
T PLN03140 893 LQLLREVTGAFRPGV----LTALMGVSGAGKT-------TLMDVLAGRKTGGYIEGDIRISGFPKKQ-ETFARISGYCEQ 960 (1470)
T ss_pred ceEeeCcEEEEECCe----EEEEECCCCCCHH-------HHHHHHcCCCCCCcccceEEECCccCCh-HHhhhheEEEcc
Confidence 469999999999999 8889999999999 99999999865 368999999987643 234567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCccccCcC-----CCCChHHHHHHHHHHHHhCCCCe
Q psy860 91 FNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVS-----GRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
++.+++.+||+|++.+....+. .+..+..+.++++++.++|.+.+++.+ ..|||||||||+||++|+.+|++
T Consensus 961 ~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~l 1040 (1470)
T PLN03140 961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040 (1470)
T ss_pred ccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCE
Confidence 9999999999999998765432 111223356889999999998888886 58999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
|||||||+|||+.++
T Consensus 1041 L~LDEPTsgLD~~~a 1055 (1470)
T PLN03140 1041 IFMDEPTSGLDARAA 1055 (1470)
T ss_pred EEEeCCCCCCCHHHH
Confidence 999999999998653
No 326
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.97 E-value=4e-31 Score=236.51 Aligned_cols=143 Identities=12% Similarity=0.050 Sum_probs=121.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|+.|+ ..+|+|+||+||| ||++++.|+.+|++|.|.+ |.++ .|||++|++
T Consensus 332 ~~il~~vsl~i~~Ge----~~~l~G~NGsGKS-------TLlk~l~G~~~p~~G~i~~-~~~~--------~i~y~~q~~ 391 (635)
T PRK11147 332 KQLVKDFSAQVQRGD----KIALIGPNGCGKT-------TLLKLMLGQLQADSGRIHC-GTKL--------EVAYFDQHR 391 (635)
T ss_pred eEEEcCcEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCcEEEE-CCCc--------EEEEEeCcc
Confidence 469999999999999 7889999999999 9999999999999999977 4332 599999985
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 93 -GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 93 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
.+++.+||.+++.+....... ......+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 392 ~~l~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 392 AELDPEKTVMDNLAEGKQEVMV--NGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred cccCCCCCHHHHHHhhcccccc--cchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 588899999999764221111 12234678889999996 56899999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 470 ~LD~~~~ 476 (635)
T PRK11147 470 DLDVETL 476 (635)
T ss_pred CCCHHHH
Confidence 9998753
No 327
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.97 E-value=3.5e-31 Score=252.56 Aligned_cols=154 Identities=16% Similarity=0.154 Sum_probs=128.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC----CcccccccccccccccHH-hhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS----PFQAAQNSLLMTNIMHLF-QYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~----~~~~g~i~~~g~~~~~~~-~~~~~ig~ 87 (178)
.++|+|||+++++|| +.+|+|+||+||| ||++.+.|.. +|++|+|.++|.++.+.. +.++.++|
T Consensus 74 ~~iL~~vs~~i~~Ge----~~aIlG~nGsGKS-------TLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y 142 (1394)
T TIGR00956 74 FDILKPMDGLIKPGE----LTVVLGRPGSGCS-------TLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY 142 (1394)
T ss_pred ceeeeCCEEEEECCE----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE
Confidence 569999999999999 7889999999999 9999999985 578999999998875543 35667999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcC-------CCCCChhHH-HHHHHHHcCCCccccCcC-----CCCChHHHHHHHHHH
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRG-------IPGVKSGPI-IDYWIDLLGLTEYRHRVS-----GRYSGGNKRKLSTAM 154 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~-------~~~~~~~~~-~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~IAr 154 (178)
++|++.+++.+||+|++.+....+. ....+..++ ++++++.+||.+.+++++ ..|||||||||+||+
T Consensus 143 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~ 222 (1394)
T TIGR00956 143 NAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAE 222 (1394)
T ss_pred eccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHH
Confidence 9999999999999999998765432 111111122 456899999998877654 579999999999999
Q ss_pred HHhCCCCeEEeeCCCCCCCCCCC
Q psy860 155 ALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 155 aL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|+.+|++++|||||+|||+.++
T Consensus 223 aL~~~p~vlllDEPTsgLD~~~~ 245 (1394)
T TIGR00956 223 ASLGGAKIQCWDNATRGLDSATA 245 (1394)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHH
Confidence 99999999999999999998753
No 328
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.8e-32 Score=201.52 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=137.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc-c--------cHHhhc-
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI-M--------HLFQYL- 82 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~-~--------~~~~~~- 82 (178)
.+++++|||++..|| +..+-|++|+||| |+++++.+-..|++|+|++....- - ..-++|
T Consensus 24 LpV~~~vslsV~aGE----CvvL~G~SG~GKS-------tllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr 92 (235)
T COG4778 24 LPVLRNVSLSVNAGE----CVVLHGPSGSGKS-------TLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRR 92 (235)
T ss_pred eeeeeceeEEecCcc----EEEeeCCCCCcHH-------HHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHH
Confidence 689999999999999 8889999999999 999999999999999997765431 1 122344
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+.||||.|.-...|..+..|.+.-+....+.+.+..+.++.+++.++++. ..++-.|.++|||+||||.|||.++.+-.
T Consensus 93 ~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~p 172 (235)
T COG4778 93 TTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYP 172 (235)
T ss_pred hhhHHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCc
Confidence 56999999988889999999888887778888888888999999999997 67788999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNTT 178 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~~ 178 (178)
+|+|||||++||..+++
T Consensus 173 ILLLDEPTasLDa~Nr~ 189 (235)
T COG4778 173 ILLLDEPTASLDATNRA 189 (235)
T ss_pred eEEecCCcccccccchH
Confidence 99999999999998863
No 329
>KOG0061|consensus
Probab=99.97 E-value=8.7e-31 Score=232.99 Aligned_cols=153 Identities=21% Similarity=0.203 Sum_probs=135.9
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC---cccccccccccccccHHhhccceEEe
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP---FQAAQNSLLMTNIMHLFQYLSGIGYC 88 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~---~~~g~i~~~g~~~~~~~~~~~~ig~v 88 (178)
..++|++||..++.|| +.||.|++|+||| ||+..+.|... ..+|+|.+||+. ......++..|||
T Consensus 42 ~k~iL~~vsg~~~~Ge----l~AimG~SGsGKt-------TLL~~Lagr~~~~~~~~G~ilvNG~~-~~~~~~~~~s~yV 109 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE----LLAIMGPSGSGKT-------TLLNALAGRLNGGLKLSGEILLNGRP-RDSRSFRKISGYV 109 (613)
T ss_pred cceeeeCcEEEEecCe----EEEEECCCCCCHH-------HHHHHHhccccCCCcceEEEEECCcc-CchhhhhheeEEE
Confidence 5789999999999999 7789999999999 99999998865 489999999943 3455677789999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCC---CCCChhHHHHHHHHHcCCCccccCcCCC-----CChHHHHHHHHHHHHhCCC
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGI---PGVKSGPIIDYWIDLLGLTEYRHRVSGR-----YSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----LSgGqkQRv~IAraL~~~P 160 (178)
.|++.+++.+||+|++.+.+..+-. +.++.+++++++++.+|+.+.+|..++. +|||||+||+||.-|+++|
T Consensus 110 ~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P 189 (613)
T KOG0061|consen 110 QQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDP 189 (613)
T ss_pred cccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCC
Confidence 9999999999999999998877532 3456677899999999999999999974 9999999999999999999
Q ss_pred CeEEeeCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~ 176 (178)
.+|+|||||||||..+
T Consensus 190 ~iLflDEPTSGLDS~s 205 (613)
T KOG0061|consen 190 SILFLDEPTSGLDSFS 205 (613)
T ss_pred CEEEecCCCCCcchhh
Confidence 9999999999999865
No 330
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=4.8e-31 Score=215.30 Aligned_cols=135 Identities=20% Similarity=0.158 Sum_probs=109.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++| .++|++|++
T Consensus 50 ~~vL~~vs~~i~~Ge----~~~liG~NGsGKS-------TLl~~I~Gl~~p~~G~I~i~g-----------~i~yv~q~~ 107 (282)
T cd03291 50 APVLKNINLKIEKGE----MLAITGSTGSGKT-------SLLMLILGELEPSEGKIKHSG-----------RISFSSQFS 107 (282)
T ss_pred ccceeeeeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECC-----------EEEEEeCcc
Confidence 469999999999999 7889999999999 999999999999999998876 399999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-----------cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-----------YRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
.+++. |++||+.+.... . ...+.+.++.+++.+ ..++.+.+||+||||||+|||||+.+|+
T Consensus 108 ~l~~~-tv~enl~~~~~~-----~--~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 179 (282)
T cd03291 108 WIMPG-TIKENIIFGVSY-----D--EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDAD 179 (282)
T ss_pred ccccc-CHHHHhhccccc-----C--HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 87764 999998753211 0 112233344444432 2234567999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
++||||||+|||+.++
T Consensus 180 iLiLDEPt~gLD~~~~ 195 (282)
T cd03291 180 LYLLDSPFGYLDVFTE 195 (282)
T ss_pred EEEEECCCccCCHHHH
Confidence 9999999999999754
No 331
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.96 E-value=4.9e-31 Score=253.49 Aligned_cols=152 Identities=17% Similarity=0.117 Sum_probs=127.8
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+++. .++|+||||+|++|| ..+|+|++|+||| ||++.+.|+.+|++|+|.+||.++.+ ...+
T Consensus 1292 f~Y~~~~--~~vL~~is~~I~~Ge----kiaIVGrTGsGKS-------TL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957 1292 LRYREDL--DLVLRHINVTIHGGE----KVGIVGRTGAGKS-------SLTLGLFRINESAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred EEeCCCC--cccccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCccCCCCeEEECCEEccccCHHHH
Confidence 5675443 269999999999999 7889999999999 99999999999999999999999986 4678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCcC----CCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRVS----GRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~~----~~LSgGqkQRv 150 (178)
|++|++|||+|.+|.. |+++|+..+. ....+.+.++++..++.+. .|..+ ..||||||||+
T Consensus 1359 R~~i~iVpQdp~LF~g-TIr~NLdp~~-------~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl 1430 (1522)
T TIGR00957 1359 RFKITIIPQDPVLFSG-SLRMNLDPFS-------QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLV 1430 (1522)
T ss_pred HhcCeEECCCCcccCc-cHHHHcCccc-------CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHH
Confidence 9999999999999876 9999996421 1224557777887776432 23333 46999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+|++|+||||||+||+.+
T Consensus 1431 ~LARALLr~~~ILiLDEaTSalD~~T 1456 (1522)
T TIGR00957 1431 CLARALLRKTKILVLDEATAAVDLET 1456 (1522)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHH
Confidence 99999999999999999999999865
No 332
>PTZ00243 ABC transporter; Provisional
Probab=99.96 E-value=9.9e-31 Score=251.47 Aligned_cols=152 Identities=17% Similarity=0.157 Sum_probs=128.1
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|+|.++. .++|+||||+|++|| ..+|+|++|+||| ||++.+.|+.+|++|+|.+||.++.+ ..++
T Consensus 1316 f~Y~~~~--~~vL~~vsf~I~~Ge----kVaIVGrTGSGKS-------TLl~lLlrl~~p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243 1316 MRYREGL--PLVLRGVSFRIAPRE----KVGIVGRTGSGKS-------TLLLTFMRMVEVCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred EEeCCCC--CceeecceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEEcccCCHHHH
Confidence 5675432 359999999999999 7889999999999 99999999999999999999999976 5688
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cCcC----CCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HRVS----GRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~----~~LSgGqkQRv 150 (178)
|+.|+||||++.+|.. |+++|+..+. ....+.+.++++.+++.+.. |..+ .+||||||||+
T Consensus 1383 R~~I~iVpQdp~LF~g-TIreNIdp~~-------~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrL 1454 (1560)
T PTZ00243 1383 RRQFSMIPQDPVLFDG-TVRQNVDPFL-------EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLM 1454 (1560)
T ss_pred HhcceEECCCCccccc-cHHHHhCccc-------CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHH
Confidence 9999999999998865 9999996421 12345688888888875432 3333 46999999999
Q ss_pred HHHHHHhCC-CCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGD-RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~-P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+ |++||||||||+||+.+
T Consensus 1455 aLARALL~~~~~ILlLDEATSaLD~~t 1481 (1560)
T PTZ00243 1455 CMARALLKKGSGFILMDEATANIDPAL 1481 (1560)
T ss_pred HHHHHHhcCCCCEEEEeCCCccCCHHH
Confidence 999999996 89999999999999865
No 333
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.5e-30 Score=197.32 Aligned_cols=150 Identities=20% Similarity=0.202 Sum_probs=135.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHh-hccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQ-YLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~-~~~~ig~v~Q~ 91 (178)
.+.|.++||++.+|| +..|.|+||+||| ||++.+.|+..|++|+|.+.+.++....+ +++.+-|+--.
T Consensus 15 ~~lf~~L~f~l~~Ge----~~~i~G~NG~GKT-------tLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~ 83 (209)
T COG4133 15 RTLFSDLSFTLNAGE----ALQITGPNGAGKT-------TLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQ 83 (209)
T ss_pred ceeecceeEEEcCCC----EEEEECCCCCcHH-------HHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhcc
Confidence 578999999999999 7779999999999 99999999999999999999999876544 66677788788
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
+.+-+.+|++||+.|+..+.+- .....+.++++.|||....|.++.+||-|||+||+|||-.+..+++=||||||++
T Consensus 84 ~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 84 PGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred ccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 8999999999999999887653 2245688899999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 172 QNLYN 176 (178)
Q Consensus 172 LD~~~ 176 (178)
||..+
T Consensus 161 LDk~g 165 (209)
T COG4133 161 LDKEG 165 (209)
T ss_pred cCHHH
Confidence 99865
No 334
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.96 E-value=2.1e-30 Score=215.74 Aligned_cols=160 Identities=20% Similarity=0.184 Sum_probs=129.1
Q ss_pred hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-----cccccccccccccccH--
Q psy860 6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----FQAAQNSLLMTNIMHL-- 78 (178)
Q Consensus 6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----~~~g~i~~~g~~~~~~-- 78 (178)
|..+-|.+.++++|||+|.+|| -.|++|.+||||| -....++++++ --+|.|.++|+++-..
T Consensus 16 f~~~~~~~~aVk~isf~i~~GE----tlAlVGESGSGKS-------vTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se 84 (534)
T COG4172 16 FHQEGGTVEAVKGISFDIEAGE----TLALVGESGSGKS-------VTALSILGLLPSPAAAHPSGSILFDGEDLLAASE 84 (534)
T ss_pred EecCCcceEeeccceeeecCCC----EEEEEecCCCCcc-------HHHHHHHHhcCCCcccCccceeEEcChhhhcCCH
Confidence 3344467899999999999999 7779999999999 33334444432 2467899999987432
Q ss_pred ---Hhhc-cceEEecCCC--CCCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCc---cccCcCCCCChHHHH
Q psy860 79 ---FQYL-SGIGYCPQFN--GINEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYSGGNKR 148 (178)
Q Consensus 79 ---~~~~-~~ig~v~Q~~--~l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LSgGqkQ 148 (178)
..+| .+|+++||+| .+.|-.|+...+....++ +++.+.++++++.++|+.+|+.+ ..+.+|++|||||||
T Consensus 85 ~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQ 164 (534)
T COG4172 85 RQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQ 164 (534)
T ss_pred HHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhh
Confidence 3344 4699999998 588888887777665443 57777888999999999999963 558899999999999
Q ss_pred HHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 149 KLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 149 Rv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
||+||+||+.+|++||.||||++||+.-
T Consensus 165 RVMIAMALan~P~lLIADEPTTALDVtv 192 (534)
T COG4172 165 RVMIAMALANEPDLLIADEPTTALDVTV 192 (534)
T ss_pred HHHHHHHHcCCCCeEeecCCcchhhhhh
Confidence 9999999999999999999999999864
No 335
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.6e-30 Score=230.45 Aligned_cols=148 Identities=18% Similarity=0.117 Sum_probs=116.0
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEe
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYC 88 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v 88 (178)
.+|..++|+||||+|..|+ ..+|+|+|||||| ||++++.|..+|++|.|.+++.. .++|+
T Consensus 10 ~~g~~~~l~~vs~~i~~Ge----~v~LvG~NGsGKS-------TLLkiL~G~~~pd~G~I~~~~~~---------~i~~~ 69 (638)
T PRK10636 10 RRGVRVLLDNATATINPGQ----KVGLVGKNGCGKS-------TLLALLKNEISADGGSYTFPGNW---------QLAWV 69 (638)
T ss_pred EeCCceeecCcEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEecCCC---------EEEEE
Confidence 3455679999999999999 7889999999999 99999999999999999887642 37888
Q ss_pred cCCCCCCCCCCHHHHHHH-----------------------HHH----hcCCCCCChhHHHHHHHHHcCCC-ccccCcCC
Q psy860 89 PQFNGINEHLTAQEMLEC-----------------------FSA----LRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSG 140 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~-----------------------~~~----~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~ 140 (178)
+|++..+ ..++.+.+.- +.. .......+..+++.++++.+|+. +..++++.
T Consensus 70 ~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~ 148 (638)
T PRK10636 70 NQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVS 148 (638)
T ss_pred ecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchh
Confidence 8754322 2344332210 000 00111223456788999999997 57899999
Q ss_pred CCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 141 RYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 141 ~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||||||||+||+||+.+|++|||||||++||+.++
T Consensus 149 ~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~ 185 (638)
T PRK10636 149 DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAV 185 (638)
T ss_pred hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHH
Confidence 9999999999999999999999999999999998753
No 336
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.7e-31 Score=194.95 Aligned_cols=153 Identities=18% Similarity=0.110 Sum_probs=131.6
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc---ccccccccccccccHHhhccceEE
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF---QAAQNSLLMTNIMHLFQYLSGIGY 87 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~---~~g~i~~~g~~~~~~~~~~~~ig~ 87 (178)
+..--|.+|||+|.+|| +..+.||+||||| ||+.-+.|.+.+ -.|+++++++.+..+...++.+|+
T Consensus 13 ~g~cLLa~~n~Tia~Ge----ivtlMGPSGcGKS-------TLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 13 PGSCLLANVNFTIAKGE----IVTLMGPSGCGKS-------TLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred CCceEEEeeeEEecCCc----EEEEECCCCccHH-------HHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 33456889999999999 6669999999999 888878777665 468999999988877777889999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+||++-+||+++|.+|+.|.... .+.....+..++.+|++.++....++.|.+||||||-||++-|+|+.+|+.++|||
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDE 160 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDE 160 (213)
T ss_pred eecccccccccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCC
Confidence 99999999999999999874321 12223445678899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 168 PFSSQNLY 175 (178)
Q Consensus 168 Pt~gLD~~ 175 (178)
|+|-||..
T Consensus 161 PFS~LD~A 168 (213)
T COG4136 161 PFSRLDVA 168 (213)
T ss_pred chhHHHHH
Confidence 99999964
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=3.8e-30 Score=230.30 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=118.2
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|+||||+|..|| +.+|+|+||+||| ||++.+.|..+|++|.|.+++. ..+||++|
T Consensus 323 ~~~~il~~isl~i~~Ge----~~~l~G~NGsGKS-------TLlk~l~G~~~p~~G~i~~~~~---------~~igy~~Q 382 (638)
T PRK10636 323 GDRIILDSIKLNLVPGS----RIGLLGRNGAGKS-------TLIKLLAGELAPVSGEIGLAKG---------IKLGYFAQ 382 (638)
T ss_pred CCeeeeccceEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCeEEECCC---------EEEEEecC
Confidence 33569999999999999 8889999999999 9999999999999999987532 25999999
Q ss_pred CC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 91 FN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 91 ~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+. .+.+..|+.+++.. . ......+.+.++++.+++. +..++++.+|||||||||+||++|+.+|++|||||
T Consensus 383 ~~~~~l~~~~~~~~~~~~---~---~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDE 456 (638)
T PRK10636 383 HQLEFLRADESPLQHLAR---L---APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDE 456 (638)
T ss_pred cchhhCCccchHHHHHHH---h---CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 74 35566677776532 1 1122345788999999996 47899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 457 Pt~~LD~~~~ 466 (638)
T PRK10636 457 PTNHLDLDMR 466 (638)
T ss_pred CCCCCCHHHH
Confidence 9999999754
No 338
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-30 Score=222.72 Aligned_cols=154 Identities=21% Similarity=0.133 Sum_probs=130.0
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHh--h
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQ--Y 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~--~ 81 (178)
|.|+..- .++|+|+||++..|| -.||+|++||||| |+++.+.|...|++|++.++|.++....+ +
T Consensus 344 F~y~~~~--~~~L~~~~l~l~~GE----kvAIlG~SGsGKS-------TllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~ 410 (573)
T COG4987 344 FTYPGQQ--TKALKNFNLTLAQGE----KVAILGRSGSGKS-------TLLQLLAGAWDPQQGSITLNGVEIASLDEQAL 410 (573)
T ss_pred eecCCCc--cchhhccceeecCCC----eEEEECCCCCCHH-------HHHHHHHhccCCCCCeeeECCcChhhCChhhH
Confidence 5563332 479999999999999 7889999999999 99999999999999999999999987654 7
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCc-----------CCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV-----------SGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGqkQRv 150 (178)
|+.+++++|.+++|. -|+++|+.... .....+...++++.+||.+..... -..||||||||+
T Consensus 411 ~e~i~vl~Qr~hlF~-~Tlr~NL~lA~------~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRL 483 (573)
T COG4987 411 RETISVLTQRVHLFS-GTLRDNLRLAN------PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRL 483 (573)
T ss_pred HHHHhhhccchHHHH-HHHHHHHhhcC------CCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHH
Confidence 889999999999865 59999997642 123356678888999887544333 357999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+|||+|.++..+++|||||.|||+.+.
T Consensus 484 AlAR~LL~dapl~lLDEPTegLD~~TE 510 (573)
T COG4987 484 ALARALLHDAPLWLLDEPTEGLDPITE 510 (573)
T ss_pred HHHHHHHcCCCeEEecCCcccCChhhH
Confidence 999999999999999999999999864
No 339
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.96 E-value=2.2e-30 Score=195.66 Aligned_cols=103 Identities=16% Similarity=0.100 Sum_probs=94.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~ 89 (178)
.++++++||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++|.++... ...++.++|+|
T Consensus 13 ~~vl~~i~~~i~~Ge----~~~l~G~nGsGKS-------TLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~ 81 (163)
T cd03216 13 VKALDGVSLSVRRGE----VHALLGENGAGKS-------TLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVY 81 (163)
T ss_pred eEEEeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEE
Confidence 479999999999999 8889999999999 999999999999999999999887542 23456799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
| ||+|||||++|||||+.+|++++|||||
T Consensus 82 q---------------------------------------------------LS~G~~qrl~laral~~~p~illlDEP~ 110 (163)
T cd03216 82 Q---------------------------------------------------LSVGERQMVEIARALARNARLLILDEPT 110 (163)
T ss_pred e---------------------------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 8 9999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 111 ~~LD~~~~ 118 (163)
T cd03216 111 AALTPAEV 118 (163)
T ss_pred cCCCHHHH
Confidence 99998764
No 340
>PRK13409 putative ATPase RIL; Provisional
Probab=99.96 E-value=5.2e-30 Score=227.35 Aligned_cols=143 Identities=17% Similarity=0.163 Sum_probs=120.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccc-----------ccccccccHH-h-
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNS-----------LLMTNIMHLF-Q- 80 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~-----------~~g~~~~~~~-~- 80 (178)
.+|++|+ .+++|| +.+|+|+||+||| |+++.+.|+.+|+.|++. ++|.++.+.. +
T Consensus 88 ~~L~~l~-~i~~Ge----v~gLvG~NGaGKS-------TLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 88 FKLYGLP-IPKEGK----VTGILGPNGIGKT-------TAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred eeEecCC-cCCCCC----EEEEECCCCCCHH-------HHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 4899999 999999 7779999999999 999999999999999997 8888776542 1
Q ss_pred --hccceEEecCCCCCCCC---CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHH
Q psy860 81 --YLSGIGYCPQFNGINEH---LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMA 155 (178)
Q Consensus 81 --~~~~ig~v~Q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAra 155 (178)
.+.++++.+|....++. .||.|++... +.+++++++++.+++.+..++.+.+|||||||||+||+|
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~a 226 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---------DERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAA 226 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhh---------hHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence 12346777776544443 3898887531 234578899999999988999999999999999999999
Q ss_pred HhCCCCeEEeeCCCCCCCCCCC
Q psy860 156 LIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 156 L~~~P~~lllDEPt~gLD~~~~ 177 (178)
|+.+|++++|||||++||+.++
T Consensus 227 l~~~p~lllLDEPts~LD~~~~ 248 (590)
T PRK13409 227 LLRDADFYFFDEPTSYLDIRQR 248 (590)
T ss_pred HhcCCCEEEEECCCCCCCHHHH
Confidence 9999999999999999999754
No 341
>PLN03140 ABC transporter G family member; Provisional
Probab=99.96 E-value=4.7e-30 Score=245.05 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=128.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccHHhhccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHLFQYLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~~~~~~~ig~v~ 89 (178)
.++|+|||+.|++|| +.+|+|+||+||| ||++.+.|..+|+ +|+|.++|.++.+.. .++.++||+
T Consensus 178 ~~IL~~vs~~i~~Ge----~~~llGpnGSGKS-------TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-~~~~i~yv~ 245 (1470)
T PLN03140 178 LTILKDASGIIKPSR----MTLLLGPPSSGKT-------TLLLALAGKLDPSLKVSGEITYNGYRLNEFV-PRKTSAYIS 245 (1470)
T ss_pred ceeccCCeEEEeCCe----EEEEEcCCCCCHH-------HHHHHHhCCCCCCCcceeEEEECCEechhhc-ccceeEEec
Confidence 569999999999999 7779999999999 9999999999888 999999998875442 256799999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCC----------CCC------------------------hhHHHHHHHHHcCCCccc
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIP----------GVK------------------------SGPIIDYWIDLLGLTEYR 135 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~L~~~~ 135 (178)
|++.+++.+||+|++.|....++.. ..+ ....++++++.+||.+.+
T Consensus 246 Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~ 325 (1470)
T PLN03140 246 QNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICK 325 (1470)
T ss_pred ccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCcccc
Confidence 9999999999999999976554211 000 001246789999998765
Q ss_pred -----cCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 136 -----HRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 136 -----~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
++.+..|||||||||.||++|+.+|+++++||||+|||+.++
T Consensus 326 ~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~ 372 (1470)
T PLN03140 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTT 372 (1470)
T ss_pred CceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHH
Confidence 456789999999999999999999999999999999998753
No 342
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=5.1e-30 Score=198.33 Aligned_cols=159 Identities=18% Similarity=0.135 Sum_probs=131.1
Q ss_pred hccCc-cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhh--ccc
Q psy860 8 SGIGY-CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQY--LSG 84 (178)
Q Consensus 8 ~~~~~-~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~--~~~ 84 (178)
+|++. .+||+++|++|.+|+ |+.++|.||+||| |+++.+.|-.+|++|+|.++|.++...... ...
T Consensus 13 ~g~~~ek~~l~~~sL~I~~g~----FvtViGsNGAGKS-------Tlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~ 81 (263)
T COG1101 13 KGTPLEKRALNGLSLEIAEGD----FVTVIGSNGAGKS-------TLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANL 81 (263)
T ss_pred CCChhHHHHHhcCceeecCCc----eEEEEcCCCccHH-------HHHHHhhCccccCCceEEECceecccCCHHHHhhH
Confidence 34443 679999999999999 9999999999999 999999999999999999999999875433 346
Q ss_pred eEEecCCC--CCCCCCCHHHHHHHHHHh---cCCCC---CChhHHHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHH
Q psy860 85 IGYCPQFN--GINEHLTAQEMLECFSAL---RGIPG---VKSGPIIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAM 154 (178)
Q Consensus 85 ig~v~Q~~--~l~~~ltv~e~l~~~~~~---~~~~~---~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAr 154 (178)
++-|||+| ..++.+|++||+..+... ++... ...++...+-++.+ |+++..+.+++-|||||||-|++++
T Consensus 82 larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~M 161 (263)
T COG1101 82 LARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLM 161 (263)
T ss_pred HHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHH
Confidence 88999997 578999999999886543 22222 12222333445555 4568889999999999999999999
Q ss_pred HHhCCCCeEEeeCCCCCCCCCCC
Q psy860 155 ALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 155 aL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|.++.|++|+|||-|++|||++.
T Consensus 162 Atl~~pkiLLLDEHTAALDPkta 184 (263)
T COG1101 162 ATLHPPKILLLDEHTAALDPKTA 184 (263)
T ss_pred HhcCCCcEEEecchhhcCCcchH
Confidence 99999999999999999999863
No 343
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.96 E-value=9.5e-30 Score=244.20 Aligned_cols=151 Identities=16% Similarity=0.097 Sum_probs=126.7
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|+|+++ ..++|+||||+|++|| ..+|+|++|+||| ||++.+.|+.+ ++|.|.+||.++.. ...+
T Consensus 1225 ~~Y~~~--~~~vL~~is~~I~~Ge----kvaIvGrSGsGKS-------TLl~lL~rl~~-~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271 1225 AKYTEA--GRAVLQDLSFSVEGGQ----RVGLLGRTGSGKS-------TLLSALLRLLS-TEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred EEeCCC--CcceeeccEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhhcC-CCcEEEECCEEcccCCHHHH
Confidence 456543 2479999999999999 8889999999999 99999999986 78999999999976 4678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-------CcC----CCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-------RVS----GRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-------~~~----~~LSgGqkQRv 150 (178)
|++|+||||+|.+|.. |+++|+..+. ....+.+.++++.+++.+... ..+ ..||||||||+
T Consensus 1291 R~~is~IpQdp~LF~G-TIR~NLdp~~-------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL 1362 (1490)
T TIGR01271 1291 RKAFGVIPQKVFIFSG-TFRKNLDPYE-------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLM 1362 (1490)
T ss_pred HhceEEEeCCCccCcc-CHHHHhCccc-------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHH
Confidence 9999999999999875 9999996421 123556888888888754332 222 36999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+|++||||||||+||+.+
T Consensus 1363 ~LARALLr~~~ILlLDEaTS~lD~~T 1388 (1490)
T TIGR01271 1363 CLARSILSKAKILLLDEPSAHLDPVT 1388 (1490)
T ss_pred HHHHHHhCCCCEEEEeCCcccCCHHH
Confidence 99999999999999999999999864
No 344
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=1.2e-29 Score=228.92 Aligned_cols=139 Identities=13% Similarity=0.044 Sum_probs=114.6
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
++|++|||+|..|| +.+|+|+||+||| ||++.+.|+.+|++|+|.+++ +.+|||++|++
T Consensus 523 ~il~~vsl~i~~Ge----~i~LvG~NGsGKS-------TLLk~L~Gll~p~~G~I~~~~---------~~~igyv~Q~~- 581 (718)
T PLN03073 523 LLFKNLNFGIDLDS----RIAMVGPNGIGKS-------TILKLISGELQPSSGTVFRSA---------KVRMAVFSQHH- 581 (718)
T ss_pred eeEeccEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCceEEECC---------ceeEEEEeccc-
Confidence 58999999999999 8889999999999 999999999999999997654 23699999985
Q ss_pred CCCCCCHHHHHHHH-HHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 94 INEHLTAQEMLECF-SALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 94 l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
.+.+++.++.... .... + ....+.+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|
T Consensus 582 -~~~l~~~~~~~~~~~~~~--~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~ 657 (718)
T PLN03073 582 -VDGLDLSSNPLLYMMRCF--P-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNH 657 (718)
T ss_pred -cccCCcchhHHHHHHHhc--C-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 2345555554322 1111 1 12245688999999997 467899999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 658 LD~~s~ 663 (718)
T PLN03073 658 LDLDAV 663 (718)
T ss_pred CCHHHH
Confidence 998753
No 345
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=3.8e-30 Score=204.92 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=135.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec-C
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP-Q 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~-Q 90 (178)
.+++.||||+|++|+ ...++|+||+||| |.+|.+.|++.|++|.+.++|...-. ..++-+.+++|+ |
T Consensus 37 ~~AVqdisf~IP~G~----ivgflGaNGAGKS-------TtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gq 105 (325)
T COG4586 37 IEAVQDISFEIPKGE----IVGFLGANGAGKS-------TTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQ 105 (325)
T ss_pred hhhhheeeeecCCCc----EEEEEcCCCCcch-------hhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhh
Confidence 479999999999999 5559999999999 99999999999999999999987543 344556788875 5
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
..++..++.+.+.+.....++.++..+-+++.+.+.+.++++...+.+++.||-|||.|+.||.||+++|++|+|||||-
T Consensus 106 k~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTv 185 (325)
T COG4586 106 KLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTV 185 (325)
T ss_pred hheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCcc
Confidence 66787888888877776667777777788889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 186 gLDV~aq 192 (325)
T COG4586 186 GLDVNAQ 192 (325)
T ss_pred CcchhHH
Confidence 9998764
No 346
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.96 E-value=2.6e-29 Score=224.88 Aligned_cols=145 Identities=17% Similarity=0.083 Sum_probs=111.8
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|+||||+|+.|+ ..+|+|+|||||| ||++++.|+.+|++|+|.+++.. .+++++|
T Consensus 14 ~~~~il~~is~~i~~Ge----~v~LvG~NGsGKS-------TLLriiaG~~~p~~G~I~~~~~~---------~~~~l~q 73 (635)
T PRK11147 14 SDAPLLDNAELHIEDNE----RVCLVGRNGAGKS-------TLMKILNGEVLLDDGRIIYEQDL---------IVARLQQ 73 (635)
T ss_pred CCceeEeCcEEEECCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCeEEEeCCCC---------EEEEecc
Confidence 44579999999999999 8889999999999 99999999999999999887632 2566666
Q ss_pred CCCCCCCCCHHHHH------------------------------HHHHHh----cCCCCCChhHHHHHHHHHcCCCcccc
Q psy860 91 FNGINEHLTAQEML------------------------------ECFSAL----RGIPGVKSGPIIDYWIDLLGLTEYRH 136 (178)
Q Consensus 91 ~~~l~~~ltv~e~l------------------------------~~~~~~----~~~~~~~~~~~~~~~l~~~~L~~~~~ 136 (178)
.+......++.+++ ..+... ......+..+++.++++.+|+. .+
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~ 151 (635)
T PRK11147 74 DPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PD 151 (635)
T ss_pred CCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CC
Confidence 54322223444332 111110 0111223456788999999996 38
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 137 ~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
+++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 152 ~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~ 192 (635)
T PRK11147 152 AALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETI 192 (635)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHH
Confidence 89999999999999999999999999999999999999764
No 347
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1e-28 Score=192.55 Aligned_cols=153 Identities=19% Similarity=0.172 Sum_probs=133.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccH---HhhccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHL---FQYLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~---~~~~~~ig~ 87 (178)
+++|++||++|..|| +-+|.||||+||| ||...++|. ..+++|+|.++|+++.++ .+.|.+|..
T Consensus 17 keILkgvnL~v~~GE----vhaiMGPNGsGKS-------TLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifL 85 (251)
T COG0396 17 KEILKGVNLTVKEGE----VHAIMGPNGSGKS-------TLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFL 85 (251)
T ss_pred hhhhcCcceeEcCCc----EEEEECCCCCCHH-------HHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEE
Confidence 489999999999999 7889999999999 999999998 578999999999999874 457789999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhc-CCC--CCChhHHHHHHHHHcCCCc-cccCcCCC-CChHHHHHHHHHHHHhCCCCe
Q psy860 88 CPQFNGINEHLTAQEMLECFSALR-GIP--GVKSGPIIDYWIDLLGLTE-YRHRVSGR-YSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~-~~~--~~~~~~~~~~~l~~~~L~~-~~~~~~~~-LSgGqkQRv~IAraL~~~P~~ 162 (178)
.||+|.-++..++.+.+....... +.. ..+....+++.++.+++++ +++|.++. +|||+|+|..|+.+++.+|++
T Consensus 86 afQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl 165 (251)
T COG0396 86 AFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKL 165 (251)
T ss_pred eecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCE
Confidence 999999999999999888755432 111 2345567888999999984 88999976 999999999999999999999
Q ss_pred EEeeCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYN 176 (178)
Q Consensus 163 lllDEPt~gLD~~~ 176 (178)
.|||||-||||+.+
T Consensus 166 ~ILDE~DSGLDIda 179 (251)
T COG0396 166 AILDEPDSGLDIDA 179 (251)
T ss_pred EEecCCCcCccHHH
Confidence 99999999999753
No 348
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.95 E-value=1.8e-28 Score=214.14 Aligned_cols=149 Identities=19% Similarity=0.141 Sum_probs=123.8
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG 86 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig 86 (178)
+..+|..+.|+++|+++.+|+ -.+|+|+||+||| ||++.+.|...|++|+|..... -.++
T Consensus 10 s~~~g~~~l~~~~~l~~~~G~----riGLvG~NGaGKS-------TLLkilaG~~~~~~G~i~~~~~---------~~v~ 69 (530)
T COG0488 10 SLAYGDRPLLENVSLTLNPGE----RIGLVGRNGAGKS-------TLLKILAGELEPDSGEVTRPKG---------LRVG 69 (530)
T ss_pred EEeeCCceeecCCcceeCCCC----EEEEECCCCCCHH-------HHHHHHcCCCcCCCCeEeecCC---------ceEE
Confidence 345577889999999999999 7779999999999 9999999999999999865432 1599
Q ss_pred EecCCCCCCCCCCHHHHHHHHHH-h-----------------------------cCCCCCChhHHHHHHHHHcCCCcccc
Q psy860 87 YCPQFNGINEHLTAQEMLECFSA-L-----------------------------RGIPGVKSGPIIDYWIDLLGLTEYRH 136 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~-~-----------------------------~~~~~~~~~~~~~~~l~~~~L~~~~~ 136 (178)
|++|++.+.+..||.+.+..... . ..+...+.+.++..++..+|+.+. +
T Consensus 70 ~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~ 148 (530)
T COG0488 70 YLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-D 148 (530)
T ss_pred EeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-c
Confidence 99999999999899886654210 0 001112334677888898999876 9
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 137 ~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+++++||||||.||+||+||+.+||+|+||||||+||..+
T Consensus 149 ~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~ 188 (530)
T COG0488 149 RPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLES 188 (530)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHH
Confidence 9999999999999999999999999999999999999865
No 349
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.95 E-value=2e-28 Score=208.33 Aligned_cols=146 Identities=23% Similarity=0.168 Sum_probs=118.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.+++++|||.+.+|| ..+|+||+|+||| ||.+.++|.-+|.+|.|.+||-++.+ ..++-++|||+||
T Consensus 349 ~pil~~isF~l~~G~----~lgIIGPSgSGKS-------TLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQ 417 (580)
T COG4618 349 KPILKGISFALQAGE----ALGIIGPSGSGKS-------TLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQ 417 (580)
T ss_pred CcceecceeEecCCc----eEEEECCCCccHH-------HHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcc
Confidence 689999999999999 7779999999999 99999999999999999999998876 4567789999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHH-------cCCCccccCcC----CCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDL-------LGLTEYRHRVS----GRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-------~~L~~~~~~~~----~~LSgGqkQRv~IAraL~~~ 159 (178)
+-.+|+. |+.||+.-|.. +.+.+.+-++.+. +.+.+--|..+ ..||||||||+++||||..+
T Consensus 418 dVeLF~G-TIaeNIaRf~~------~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~ 490 (580)
T COG4618 418 DVELFDG-TIAENIARFGE------EADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGD 490 (580)
T ss_pred cceecCC-cHHHHHHhccc------cCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCC
Confidence 9998876 99999975421 1122222222222 23444444544 36999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~ 176 (178)
|.+++||||-|+||...
T Consensus 491 P~lvVLDEPNsNLD~~G 507 (580)
T COG4618 491 PFLVVLDEPNSNLDSEG 507 (580)
T ss_pred CcEEEecCCCCCcchhH
Confidence 99999999999999754
No 350
>KOG0056|consensus
Probab=99.95 E-value=2.6e-29 Score=213.33 Aligned_cols=158 Identities=17% Similarity=0.157 Sum_probs=123.6
Q ss_pred hhhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hh
Q psy860 3 LFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQ 80 (178)
Q Consensus 3 ~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~ 80 (178)
-|.|++|. ++|+||||++.+|+ -.|++|++|+||| |+++.+.++..-++|.|.+||+++.+. ..
T Consensus 544 tF~Y~p~k---~vl~disF~v~pGk----tvAlVG~SGaGKS-------TimRlLfRffdv~sGsI~iDgqdIrnvt~~S 609 (790)
T KOG0056|consen 544 TFAYDPGK---PVLSDISFTVQPGK----TVALVGPSGAGKS-------TIMRLLFRFFDVNSGSITIDGQDIRNVTQSS 609 (790)
T ss_pred EEecCCCC---ceeecceEEecCCc----EEEEECCCCCchh-------HHHHHHHHHhhccCceEEEcCchHHHHHHHH
Confidence 37898888 89999999999999 7889999999999 999999999999999999999999875 46
Q ss_pred hccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHH---HHHcCCCccccCcCC----CCChHHHHHHHHH
Q psy860 81 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYW---IDLLGLTEYRHRVSG----RYSGGNKRKLSTA 153 (178)
Q Consensus 81 ~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~---l~~~~L~~~~~~~~~----~LSgGqkQRv~IA 153 (178)
+|+.||.|||+..+| +-|+..|+.+..- ....++..+.++.+ =+.++.++.-+.+++ .|||||||||+||
T Consensus 610 LRs~IGVVPQDtvLF-NdTI~yNIryak~--~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiA 686 (790)
T KOG0056|consen 610 LRSSIGVVPQDTVLF-NDTILYNIRYAKP--SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIA 686 (790)
T ss_pred HHHhcCcccCcceee-cceeeeheeecCC--CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHH
Confidence 899999999998876 4578788865310 11112212211111 122444443344444 6999999999999
Q ss_pred HHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 154 MALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 154 raL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|++..+|.+++|||.||+||-.+.
T Consensus 687 RtiLK~P~iIlLDEATSALDT~tE 710 (790)
T KOG0056|consen 687 RTILKAPSIILLDEATSALDTNTE 710 (790)
T ss_pred HHHhcCCcEEEEcchhhhcCCccH
Confidence 999999999999999999997654
No 351
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.95 E-value=2.2e-28 Score=185.65 Aligned_cols=153 Identities=14% Similarity=0.047 Sum_probs=131.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cHHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HLFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~~~~~~~ig~v~Q 90 (178)
..+++.|||++++|+ -.|++|.||+||| ||.+.+.|+.+|++|++.++++... +.....++|-++||
T Consensus 26 ~~AV~~vSFtL~~~Q----TlaiIG~NGSGKS-------TLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQ 94 (267)
T COG4167 26 VEAVKPVSFTLREGQ----TLAIIGENGSGKS-------TLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQ 94 (267)
T ss_pred hhcccceEEEecCCc----EEEEEccCCCcHh-------HHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeec
Confidence 568999999999999 6779999999999 9999999999999999999999764 34333467999999
Q ss_pred CCC--CCCCCCHHHHHHHHHHhc-CCCCCChhHHHHHHHHHcCC-CccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 91 FNG--INEHLTAQEMLECFSALR-GIPGVKSGPIIDYWIDLLGL-TEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 91 ~~~--l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
+|+ +.|.+.+-+.+..+.+.. .+......+++.+-|+.+|| .+.++-++..||-||||||++||||+.+|+++|.|
T Consensus 95 Dpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaD 174 (267)
T COG4167 95 DPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIAD 174 (267)
T ss_pred CCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEeh
Confidence 974 788888888777766554 23344455678899999999 48899999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 167 LPFSSQNLYN 176 (178)
Q Consensus 167 EPt~gLD~~~ 176 (178)
|..++||...
T Consensus 175 eAl~~LD~sm 184 (267)
T COG4167 175 EALASLDMSM 184 (267)
T ss_pred hhhhhccHHH
Confidence 9999999754
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.95 E-value=1.8e-28 Score=187.45 Aligned_cols=115 Identities=11% Similarity=0.148 Sum_probs=95.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
+++|+||||+|+.|| ..+|+|+||+||| ||++.+. +++|++.+++... . ..++.++|++|
T Consensus 8 ~~~l~~isl~i~~G~----~~~l~G~nG~GKS-------TLl~~il----~~~G~v~~~~~~~-~--~~~~~~~~~~q-- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNV----LVVVTGVSGSGKS-------TLVNEGL----YASGKARLISFLP-K--FSRNKLIFIDQ-- 67 (176)
T ss_pred eeeecceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHh----hcCCcEEECCccc-c--cccccEEEEhH--
Confidence 689999999999999 8889999999999 9998774 3688887765421 1 11234777766
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCC--CCeEEeeCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGD--RDDGFQKLPF 169 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~--P~~lllDEPt 169 (178)
.++++.+++.. ..++++.+||+|||||++|||||+.+ |++++|||||
T Consensus 68 ------------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 68 ------------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred ------------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 24678889875 47899999999999999999999999 9999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
++||+.++
T Consensus 118 ~~LD~~~~ 125 (176)
T cd03238 118 TGLHQQDI 125 (176)
T ss_pred ccCCHHHH
Confidence 99998754
No 353
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.94 E-value=1.7e-28 Score=181.90 Aligned_cols=94 Identities=21% Similarity=0.166 Sum_probs=88.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++++++||++++|| ..+|+|+||+||| ||++++.|+.+|++|++++++. +.++|+||
T Consensus 13 ~~~l~~~~~~~~~Ge----~~~i~G~nGsGKS-------tLl~~l~G~~~~~~G~i~~~~~---------~~i~~~~~-- 70 (144)
T cd03221 13 KLLLKDISLTINPGD----RIGLVGRNGAGKS-------TLLKLIAGELEPDEGIVTWGST---------VKIGYFEQ-- 70 (144)
T ss_pred ceEEEeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCceEEEECCe---------EEEEEEcc--
Confidence 369999999999999 7889999999999 9999999999999999999874 36999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
||+||+||++|||||+.+|+++++||||+||
T Consensus 71 -------------------------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~L 101 (144)
T cd03221 71 -------------------------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHL 101 (144)
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCC
Confidence 9999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 102 D~~~~ 106 (144)
T cd03221 102 DLESI 106 (144)
T ss_pred CHHHH
Confidence 98754
No 354
>PLN03232 ABC transporter C family member; Provisional
Probab=99.94 E-value=3.5e-28 Score=233.58 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=114.3
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhcc
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLS 83 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~ 83 (178)
|.|+.. ...++|+||||+|++|| ..+|+|++||||| ||++.+.|..+|++|.+. .+++
T Consensus 622 F~y~~~-~~~~vL~~inl~i~~Ge----~vaIvG~sGSGKS-------TLl~lLlG~~~~~~G~i~----------~~~~ 679 (1495)
T PLN03232 622 FSWDSK-TSKPTLSDINLEIPVGS----LVAIVGGTGEGKT-------SLISAMLGELSHAETSSV----------VIRG 679 (1495)
T ss_pred EEcCCC-CCCceeeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCcccCCCEE----------EecC
Confidence 556432 12468999999999999 8889999999999 999999999999988752 3456
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cCc----CCCCChHHHHHHHH
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HRV----SGRYSGGNKRKLST 152 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~----~~~LSgGqkQRv~I 152 (178)
.|+||+|++.++. -|++||+.++.. ...++..++++..++.+.. +.. -.+||||||||++|
T Consensus 680 ~Iayv~Q~p~Lf~-gTIreNI~fg~~-------~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaL 751 (1495)
T PLN03232 680 SVAYVPQVSWIFN-ATVRENILFGSD-------FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSM 751 (1495)
T ss_pred cEEEEcCcccccc-ccHHHHhhcCCc-------cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHH
Confidence 8999999999875 699999987521 2245566677766654222 222 34699999999999
Q ss_pred HHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 153 AMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 153 AraL~~~P~~lllDEPt~gLD~~~ 176 (178)
|||+..+|++++||||||+||+.+
T Consensus 752 ARAly~~~~IlLLDEptSaLD~~t 775 (1495)
T PLN03232 752 ARAVYSNSDIYIFDDPLSALDAHV 775 (1495)
T ss_pred HHHHhcCCCEEEEcCCccccCHHH
Confidence 999999999999999999999864
No 355
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=9.9e-28 Score=206.17 Aligned_cols=152 Identities=19% Similarity=0.195 Sum_probs=129.4
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cH-HhhccceEEecCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HL-FQYLSGIGYCPQF 91 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~-~~~~~~ig~v~Q~ 91 (178)
.++||||++++|| +.+|.|.-|+|+| -++.++.|..++++|+|.++|+++. .+ ..++.+|+|||++
T Consensus 274 ~~~dvSf~vr~GE----IlGiaGLvGaGRT-------El~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~ED 342 (500)
T COG1129 274 KVRDVSFTVRAGE----ILGIAGLVGAGRT-------ELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPED 342 (500)
T ss_pred ceeCceeEEeCCc----EEEEeccccCCHH-------HHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcc
Confidence 5899999999999 4558899999999 7778899999999999999999764 33 3567899999998
Q ss_pred C---CCCCCCCHHHHHHHHHHhc-----CCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 92 N---GINEHLTAQEMLECFSALR-----GIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 92 ~---~l~~~ltv~e~l~~~~~~~-----~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
. +++..+++.+|+.+..... .+...+.++.++++.+.+++. +..++.+.+||||+||||.|||||+.+|++
T Consensus 343 Rk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~v 422 (500)
T COG1129 343 RKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422 (500)
T ss_pred cccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCE
Confidence 4 7899999999998762111 244455566788999999996 677899999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
|||||||.|+|+-++
T Consensus 423 LilDEPTRGIDVGAK 437 (500)
T COG1129 423 LILDEPTRGIDVGAK 437 (500)
T ss_pred EEECCCCcCcccchH
Confidence 999999999998654
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.94 E-value=6.4e-28 Score=231.65 Aligned_cols=135 Identities=19% Similarity=0.117 Sum_probs=109.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|++.++| .|+||+|++
T Consensus 439 ~~~l~~i~l~i~~G~----~~~I~G~~GsGKS-------TLl~~l~G~~~~~~G~i~~~g-----------~iayv~Q~~ 496 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQ----LLAVAGSTGSGKS-------SLLMMIMGELEPSEGKIKHSG-----------RISFSPQTS 496 (1490)
T ss_pred CcceeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECC-----------EEEEEeCCC
Confidence 468999999999999 7889999999999 999999999999999998876 499999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-----------ccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-----------EYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
.+++ .|++||+.|.... . .++..++++..++. .....+..+|||||||||+||||++.+|+
T Consensus 497 ~l~~-~Ti~eNI~~g~~~---~----~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~ 568 (1490)
T TIGR01271 497 WIMP-GTIKDNIIFGLSY---D----EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDAD 568 (1490)
T ss_pred ccCC-ccHHHHHHhcccc---c----hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCC
Confidence 9876 4999999875321 1 11122222222221 12344578999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
++|||||||+||+.++
T Consensus 569 illLDep~saLD~~~~ 584 (1490)
T TIGR01271 569 LYLLDSPFTHLDVVTE 584 (1490)
T ss_pred EEEEeCCcccCCHHHH
Confidence 9999999999998753
No 357
>PLN03130 ABC transporter C family member; Provisional
Probab=99.94 E-value=9.7e-28 Score=231.39 Aligned_cols=142 Identities=21% Similarity=0.206 Sum_probs=114.7
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc-ccccccccccccHHhhc
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA-AQNSLLMTNIMHLFQYL 82 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~-g~i~~~g~~~~~~~~~~ 82 (178)
|.|++. ...++|+||||+|++|| ..+|+|++|+||| ||++.+.|..+|++ |.+. ++
T Consensus 622 f~y~~~-~~~~vL~~inl~i~~Ge----~vaIvG~sGSGKS-------TLl~lLlG~~~~~~GG~I~-----------l~ 678 (1622)
T PLN03130 622 FSWDSK-AERPTLSNINLDVPVGS----LVAIVGSTGEGKT-------SLISAMLGELPPRSDASVV-----------IR 678 (1622)
T ss_pred EEccCC-CCCceeeceeEEecCCC----EEEEECCCCCCHH-------HHHHHHHHhhccCCCceEE-----------Ec
Confidence 556432 12468999999999999 8889999999999 99999999999999 8885 35
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCc----CCCCChHHHHHHH
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRV----SGRYSGGNKRKLS 151 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~----~~~LSgGqkQRv~ 151 (178)
..|+||+|++.++. -|++||+.|+.. ...++..++++..++.+. .+.. -.+|||||||||+
T Consensus 679 ~~Iayv~Q~p~Lfn-gTIreNI~fg~~-------~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 679 GTVAYVPQVSWIFN-ATVRDNILFGSP-------FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred CeEEEEcCccccCC-CCHHHHHhCCCc-------ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 57999999999865 699999987521 124566677776665432 1223 3469999999999
Q ss_pred HHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 152 TAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 152 IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
||||+..+|++++||||||+||+.+
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~ 775 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHV 775 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHH
Confidence 9999999999999999999999864
No 358
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.94 E-value=5.3e-28 Score=185.00 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=88.0
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP 89 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~ 89 (178)
+|..++++++ |+|++|| +.+|+|+||+||| ||++++.|+.+|++|+|.++|. .++|++
T Consensus 10 ~~~~~~l~~~-~~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~----------~i~~~~ 67 (177)
T cd03222 10 YGVFFLLVEL-GVVKEGE----VIGIVGPNGTGKT-------TAVKILAGQLIPNGDNDEWDGI----------TPVYKP 67 (177)
T ss_pred ECCEEEEccC-cEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCCcEEEECCE----------EEEEEc
Confidence 3456788884 9999999 7889999999999 9999999999999999988875 378998
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|++. ||||||||++|||||+.+|++++|||||
T Consensus 68 q~~~------------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPt 99 (177)
T cd03222 68 QYID------------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPS 99 (177)
T ss_pred ccCC------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 8642 9999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
++||+.++
T Consensus 100 s~LD~~~~ 107 (177)
T cd03222 100 AYLDIEQR 107 (177)
T ss_pred ccCCHHHH
Confidence 99998764
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.9e-27 Score=178.32 Aligned_cols=154 Identities=14% Similarity=0.128 Sum_probs=118.8
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--c---HH
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--H---LF 79 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~---~~ 79 (178)
.|-.++ ..+||||++.+|| ..+|+|.+|+||+ ||++|+.+-..|++|++.+..+.-. + ..
T Consensus 15 ~Yg~~~----gc~~vsF~l~PGe----VLgiVGESGSGKt-------TLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 15 LYGPGK----GCRDVSFDLYPGE----VLGIVGESGSGKT-------TLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred hhCCCc----CccccceeecCCc----EEEEEecCCCcHH-------hHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 454555 5689999999999 4559999999999 9999999999999999977664321 1 11
Q ss_pred ------hhccceEEecCCCC--CCCCCCHHHHH----HH-HHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChH
Q psy860 80 ------QYLSGIGYCPQFNG--INEHLTAQEML----EC-FSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGG 145 (178)
Q Consensus 80 ------~~~~~ig~v~Q~~~--l~~~ltv~e~l----~~-~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG 145 (178)
-.|..-|+|-|+|. +....+.-.|+ .. ..+.+ ..+++.+.+||+++.++ ...|..|.++|||
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY----G~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG 155 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY----GNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG 155 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh----hhHHHHHHHHHHhcccCcccccCcccccchH
Confidence 13456899999973 43333332233 21 22222 25677899999999997 5668899999999
Q ss_pred HHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 146 NKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 146 qkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
||||+.|||-|++.|+++|+||||.|||+.-+
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQ 187 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQ 187 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhH
Confidence 99999999999999999999999999998643
No 360
>PTZ00243 ABC transporter; Provisional
Probab=99.94 E-value=2.9e-27 Score=227.68 Aligned_cols=138 Identities=19% Similarity=0.183 Sum_probs=111.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.++|..+|++|++.+ ++.|+||||++
T Consensus 673 ~~iL~~isl~i~~G~----~~~IiG~nGsGKS-------TLL~~i~G~~~~~~G~i~~-----------~~~i~yv~Q~~ 730 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGK----LTVVLGATGSGKS-------TLLQSLLSQFEISEGRVWA-----------ERSIAYVPQQA 730 (1560)
T ss_pred ceeEeeeEEEECCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEE-----------CCeEEEEeCCC
Confidence 468999999999999 8889999999999 9999999999999999864 24699999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhH-----HHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGP-----IIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
.++ +.|++||+.++.... ..+..+ .+++.++.+ |+....+++..+|||||||||+|||||+.+|++++|
T Consensus 731 ~l~-~~Tv~enI~~~~~~~---~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illL 806 (1560)
T PTZ00243 731 WIM-NATVRGNILFFDEED---AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLL 806 (1560)
T ss_pred ccC-CCcHHHHHHcCChhh---HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 875 579999998742110 000001 122334444 565566788999999999999999999999999999
Q ss_pred eCCCCCCCCCC
Q psy860 166 KLPFSSQNLYN 176 (178)
Q Consensus 166 DEPt~gLD~~~ 176 (178)
|||||+||+..
T Consensus 807 DEP~saLD~~~ 817 (1560)
T PTZ00243 807 DDPLSALDAHV 817 (1560)
T ss_pred cCccccCCHHH
Confidence 99999999864
No 361
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.93 E-value=1.8e-27 Score=178.19 Aligned_cols=102 Identities=25% Similarity=0.281 Sum_probs=93.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++++++||+|++|+ ..+|+|+||+||| |+++.+.|+.+|++|++++++.++.. ..+.++.++|+||
T Consensus 13 ~~l~~~~~~i~~g~----~~~i~G~nGsGKS-------tll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q- 80 (157)
T cd00267 13 TALDNVSLTLKAGE----IVALVGPNGSGKS-------TLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ- 80 (157)
T ss_pred eeEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-
Confidence 68999999999999 7889999999999 99999999999999999999987654 3455678999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
||+||+||++||||++.+|+++++||||+|
T Consensus 81 --------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~ 110 (157)
T cd00267 81 --------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG 110 (157)
T ss_pred --------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 111 lD~~~~ 116 (157)
T cd00267 111 LDPASR 116 (157)
T ss_pred CCHHHH
Confidence 998753
No 362
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.93 E-value=4.3e-27 Score=226.43 Aligned_cols=134 Identities=20% Similarity=0.187 Sum_probs=109.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|..+|++|++.++| .|+||||++
T Consensus 651 ~~~l~~isl~i~~G~----~v~IvG~~GsGKS-------TLl~~l~g~~~~~~G~i~~~g-----------~i~yv~Q~~ 708 (1522)
T TIGR00957 651 PPTLNGITFSIPEGA----LVAVVGQVGCGKS-------SLLSALLAEMDKVEGHVHMKG-----------SVAYVPQQA 708 (1522)
T ss_pred CceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCccCCcEEEECC-----------EEEEEcCCc
Confidence 369999999999999 8889999999999 999999999999999998876 499999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHH------cCC-----CccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDL------LGL-----TEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~------~~L-----~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
.++ +.|++||+.++... . .++.+++++. ++. ....+.+..+||||||||++||||++.+|+
T Consensus 709 ~l~-~~Ti~eNI~~g~~~---~----~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~ 780 (1522)
T TIGR00957 709 WIQ-NDSLRENILFGKAL---N----EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 780 (1522)
T ss_pred ccc-CCcHHHHhhcCCcc---C----HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 875 57999999874211 1 1222333332 222 123346678999999999999999999999
Q ss_pred eEEeeCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYN 176 (178)
Q Consensus 162 ~lllDEPt~gLD~~~ 176 (178)
+++||||||+||+.+
T Consensus 781 illLDEp~saLD~~~ 795 (1522)
T TIGR00957 781 IYLFDDPLSAVDAHV 795 (1522)
T ss_pred EEEEcCCccccCHHH
Confidence 999999999999865
No 363
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=1.9e-26 Score=181.38 Aligned_cols=142 Identities=14% Similarity=0.091 Sum_probs=129.0
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC-
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ- 90 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q- 90 (178)
...||+||||++++|| ..+|+|+||+||| ||++.+.|..+|++|++.+.|+ ++++..
T Consensus 39 ~~~aL~disf~i~~Ge----~vGiiG~NGaGKS-------TLlkliaGi~~Pt~G~v~v~G~-----------v~~li~l 96 (249)
T COG1134 39 EFWALKDISFEIYKGE----RVGIIGHNGAGKS-------TLLKLIAGIYKPTSGKVKVTGK-----------VAPLIEL 96 (249)
T ss_pred eEEEecCceEEEeCCC----EEEEECCCCCcHH-------HHHHHHhCccCCCCceEEEcce-----------Eehhhhc
Confidence 4679999999999999 7779999999999 9999999999999999988885 343333
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
..++.|.+|.+||+.+...+.++.+++.+++++++.+.-.|.++.|+++.++|-||+-|++.|.|...+|++||+||-.+
T Consensus 97 g~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvla 176 (249)
T COG1134 97 GAGFDPELTGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLA 176 (249)
T ss_pred ccCCCcccchHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhh
Confidence 23567889999999999989899889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 171 SQNLY 175 (178)
Q Consensus 171 gLD~~ 175 (178)
--|+.
T Consensus 177 vGD~~ 181 (249)
T COG1134 177 VGDAA 181 (249)
T ss_pred cCCHH
Confidence 88864
No 364
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=8.6e-27 Score=194.79 Aligned_cols=152 Identities=18% Similarity=0.185 Sum_probs=118.5
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--Hhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~ 81 (178)
|.|.. ..++|+++||+++.|+ -.|++|++|+||+ |+++.+.++..+++|.|.++|+++.++ ..+
T Consensus 270 F~y~~---~r~iL~~isf~i~~g~----tvAiVg~SG~gKs-------TI~rllfRFyD~~sG~I~id~qdir~vtq~sl 335 (497)
T COG5265 270 FAYDP---RRPILNGISFTIPLGK----TVAIVGESGAGKS-------TILRLLFRFYDVNSGSITIDGQDIRDVTQQSL 335 (497)
T ss_pred eeccc---cchhhcCccccccCcc----EEEEEeCCCCcHH-------HHHHHHHHHhCCcCceEEEcchhHHHhHHHHH
Confidence 45533 3589999999999999 7789999999999 999999999999999999999999875 457
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-------CCccccCcCC----CCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-------LTEYRHRVSG----RYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~~~~~~~----~LSgGqkQRv 150 (178)
|+.||.|||+..+| +-|...|+.+.. +. ...+.+..+.+... +++..+..++ .|||||||||
T Consensus 336 R~aIg~VPQDtvLF-NDti~yni~ygr-----~~-at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrv 408 (497)
T COG5265 336 RRAIGIVPQDTVLF-NDTIAYNIKYGR-----PD-ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRV 408 (497)
T ss_pred HHHhCcCcccceeh-hhhHHHHHhccC-----cc-ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHH
Confidence 88999999998876 457777776531 11 11222222223222 2333344444 5999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||+++.+|++|+|||.||+||-.+
T Consensus 409 aiar~ilk~p~il~~deatsaldt~t 434 (497)
T COG5265 409 AIARTILKNPPILILDEATSALDTHT 434 (497)
T ss_pred HHHHHHhcCCCEEEEehhhhHhhhhH
Confidence 99999999999999999999999765
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=1.2e-25 Score=178.05 Aligned_cols=147 Identities=12% Similarity=0.055 Sum_probs=93.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc-------cc---c--ccHHh
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM-------TN---I--MHLFQ 80 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g-------~~---~--~~~~~ 80 (178)
..+|++|||+|++|| +.+|+|+|||||| ||+...+. ..|.+.+.. .. . .+..+
T Consensus 8 ~~~l~~vsl~i~~Ge----~~~l~G~sGsGKS-------TL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (226)
T cd03270 8 EHNLKNVDVDIPRNK----LVVITGVSGSGKS-------SLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDS 72 (226)
T ss_pred hhccccceeecCCCc----EEEEEcCCCCCHH-------HHHHHHHH----HHHHHHHhhcccchhhhhhcccCcccccc
Confidence 379999999999999 8889999999999 66421111 122221100 00 0 01111
Q ss_pred hc-cceEEecCCC--CCCCCCCHHH---HHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHH
Q psy860 81 YL-SGIGYCPQFN--GINEHLTAQE---MLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTA 153 (178)
Q Consensus 81 ~~-~~ig~v~Q~~--~l~~~ltv~e---~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IA 153 (178)
.+ ....+..|++ ...+..++.. ...++.... ......++ .++++.+++.+ ..++++.+|||||||||+||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 149 (226)
T cd03270 73 IEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF--ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLA 149 (226)
T ss_pred ccCCCceEEecCCCCCCCCCccHHHHHHHHHHHHHHh--hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHH
Confidence 11 1234444443 2334445432 222222111 12222333 56899999986 58999999999999999999
Q ss_pred HHHhCCC--CeEEeeCCCCCCCCCCC
Q psy860 154 MALIGDR--DDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 154 raL~~~P--~~lllDEPt~gLD~~~~ 177 (178)
|||+.+| +++||||||+|||+.++
T Consensus 150 ral~~~p~~~llllDEPt~gLD~~~~ 175 (226)
T cd03270 150 TQIGSGLTGVLYVLDEPSIGLHPRDN 175 (226)
T ss_pred HHHHhCCCCCEEEEeCCccCCCHHHH
Confidence 9999998 59999999999998754
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.92 E-value=6e-26 Score=198.27 Aligned_cols=139 Identities=19% Similarity=0.158 Sum_probs=118.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++++++||.|..|+ -.+|+|+||+||| ||++.++|-..|.+|.|.+.-. + .+||.+|+.
T Consensus 335 ~~l~~~~s~~i~~g~----riaiiG~NG~GKS-------TLlk~l~g~~~~~~G~v~~g~~-v--------~igyf~Q~~ 394 (530)
T COG0488 335 RLLLKDLSFRIDRGD----RIAIVGPNGAGKS-------TLLKLLAGELGPLSGTVKVGET-V--------KIGYFDQHR 394 (530)
T ss_pred ceeecCceEEecCCC----EEEEECCCCCCHH-------HHHHHHhhhcccCCceEEeCCc-e--------EEEEEEehh
Confidence 579999999999999 7889999999999 9999999999999998844322 2 599999987
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 93 -GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 93 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
.+.++.|+.|++.-.. + ......+..+|..|++. +...+++..||||||-||.+|+.++.+|.+||||||||
T Consensus 395 ~~l~~~~t~~d~l~~~~-----~-~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTN 468 (530)
T COG0488 395 DELDPDKTVLEELSEGF-----P-DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTN 468 (530)
T ss_pred hhcCccCcHHHHHHhhC-----c-cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCc
Confidence 4557778988876421 1 11156788999999997 67789999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
.||+.++
T Consensus 469 hLDi~s~ 475 (530)
T COG0488 469 HLDIESL 475 (530)
T ss_pred cCCHHHH
Confidence 9998753
No 367
>PLN03073 ABC transporter F family; Provisional
Probab=99.92 E-value=1.6e-26 Score=208.82 Aligned_cols=156 Identities=15% Similarity=0.080 Sum_probs=108.6
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC---Cccccccccccccc-----cc-----
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS---PFQAAQNSLLMTNI-----MH----- 77 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~---~~~~g~i~~~g~~~-----~~----- 77 (178)
|..++|+|+||+|..|+ ..+|+|+||+||| ||++.+.|.. .|+.|.|.+..+++ ..
T Consensus 188 ~~~~ll~~isl~i~~Ge----~~gLvG~NGsGKS-------TLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 188 GGRDLIVDASVTLAFGR----HYGLVGRNGTGKT-------TFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred CCCEEEECCEEEECCCC----EEEEECCCCCCHH-------HHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence 33469999999999999 8889999999999 9999998853 56777775433321 10
Q ss_pred ------HHhhccceEEecCCCCCCCC-C---------------CHHHHHHH-HHHhcCCCCCChhHHHHHHHHHcCCC-c
Q psy860 78 ------LFQYLSGIGYCPQFNGINEH-L---------------TAQEMLEC-FSALRGIPGVKSGPIIDYWIDLLGLT-E 133 (178)
Q Consensus 78 ------~~~~~~~ig~v~Q~~~l~~~-l---------------tv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~-~ 133 (178)
....++.+++++|++.+... . .+.+.+.- ...+.........+++.++++.+|+. +
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 00112346677765432110 0 01111111 11111122234556788899999996 5
Q ss_pred cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 134 YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 134 ~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
..++++.+|||||||||+||+||+.+|++|||||||++||+.++
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~ 380 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAV 380 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 67889999999999999999999999999999999999998754
No 368
>KOG0054|consensus
Probab=99.91 E-value=3.6e-25 Score=207.54 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=123.9
Q ss_pred hhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhc
Q psy860 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYL 82 (178)
Q Consensus 5 ~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~ 82 (178)
.|.++- -+||+||||+|++|| -.+|+|.+|+||| ||+..+.++..|.+|+|.+||.++.+ +.++|
T Consensus 1147 RYrp~l--p~VLk~is~~I~p~e----KVGIVGRTGaGKS-------SL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLR 1213 (1381)
T KOG0054|consen 1147 RYRPNL--PLVLKGISFTIKPGE----KVGIVGRTGAGKS-------SLILALFRLVEPAEGEILIDGVDISKIGLHDLR 1213 (1381)
T ss_pred EeCCCC--cchhcCceEEEcCCc----eEEEeCCCCCCHH-------HHHHHHHHhcCccCCeEEEcCeecccccHHHHH
Confidence 355543 479999999999999 6669999999999 99999999999999999999999986 57899
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCc----CCCCChHHHHHHH
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRV----SGRYSGGNKRKLS 151 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~----~~~LSgGqkQRv~ 151 (178)
++++.+||+|.+|.. |+|.|+.-+..+ ..+.+=++||..+|.+. .|.. -.++|-||||-|+
T Consensus 1214 srlsIIPQdPvLFsG-TvR~NLDPf~e~-------sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlC 1285 (1381)
T KOG0054|consen 1214 SRLSIIPQDPVLFSG-TVRFNLDPFDEY-------SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLC 1285 (1381)
T ss_pred hcCeeeCCCCceecC-ccccccCccccc-------CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHH
Confidence 999999999999876 899888643221 13345555666555432 2222 3579999999999
Q ss_pred HHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 152 TAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 152 IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+||||+.+++||+|||.|+++|+.+
T Consensus 1286 LARALLr~skILvLDEATAsVD~~T 1310 (1381)
T KOG0054|consen 1286 LARALLRKSKILVLDEATASVDPET 1310 (1381)
T ss_pred HHHHHhccCCEEEEecccccCChHH
Confidence 9999999999999999999999864
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.91 E-value=3.3e-25 Score=172.28 Aligned_cols=127 Identities=10% Similarity=-0.008 Sum_probs=95.6
Q ss_pred cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---------ccccccccccccHHhhccceEE
Q psy860 17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---------AQNSLLMTNIMHLFQYLSGIGY 87 (178)
Q Consensus 17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---------g~i~~~g~~~~~~~~~~~~ig~ 87 (178)
++++++++.| +.+|+|+||+||| ||+..+.++.++.. +++.+.+.+.... ..++.++|
T Consensus 14 ~~~~l~~~~g-----~~~i~G~nGsGKS-------tll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 80 (197)
T cd03278 14 DKTTIPFPPG-----LTAIVGPNGSGKS-------NIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP-ANFAEVTL 80 (197)
T ss_pred CCeeeecCCC-----cEEEECCCCCCHH-------HHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC-CceEEEEE
Confidence 6788999987 4569999999999 88888887765542 3455555544321 23467999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh----CCCCeE
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI----GDRDDG 163 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~----~~P~~l 163 (178)
+||++..+. .. ...+++.++++. .+..++.+.+||+|||||++||++|+ .+|+++
T Consensus 81 vfq~~~~~~---------------~~---~~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~il 139 (197)
T cd03278 81 TFDNSDGRY---------------SI---ISQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFC 139 (197)
T ss_pred EEEcCCCce---------------eE---EehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 999987651 00 013456677776 56678899999999999999999997 467999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
+|||||+|||+.++
T Consensus 140 llDEP~~~LD~~~~ 153 (197)
T cd03278 140 VLDEVDAALDDANV 153 (197)
T ss_pred EEeCCcccCCHHHH
Confidence 99999999998753
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.89 E-value=4.1e-24 Score=172.50 Aligned_cols=148 Identities=14% Similarity=0.091 Sum_probs=107.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-----cc-----CCcccc-----------ccccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-----RF-----SPFQAA-----------QNSLL 71 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-----~~-----~~~~~g-----------~i~~~ 71 (178)
...|+|||++|+.|. +++|.|++||||| ||+...+ +. ..|..+ .+.++
T Consensus 8 ~~nl~~v~~~ip~g~----~~~vtGvSGsGKS-------tL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vd 76 (261)
T cd03271 8 ENNLKNIDVDIPLGV----LTCVTGVSGSGKS-------SLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVID 76 (261)
T ss_pred hhcCCCceeeccCCc----EEEEECCCCCchH-------HHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEec
Confidence 357999999999999 8889999999999 6666442 10 012111 23444
Q ss_pred cccccc-----H-------Hhhcc----------------ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHH
Q psy860 72 MTNIMH-----L-------FQYLS----------------GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIID 123 (178)
Q Consensus 72 g~~~~~-----~-------~~~~~----------------~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~ 123 (178)
..++.. + .++|+ .+.|..++...+.++|+.|++.|+..... .+++.
T Consensus 77 q~pi~~~~rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~------~~~~~ 150 (261)
T cd03271 77 QSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK------IARKL 150 (261)
T ss_pred CCcCCCCCCCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh------HHHHH
Confidence 444421 0 11111 14455555555678999999988765432 24577
Q ss_pred HHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCC---CCeEEeeCCCCCCCCCCC
Q psy860 124 YWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGD---RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 124 ~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~---P~~lllDEPt~gLD~~~~ 177 (178)
++++.+||.. ..++++.+|||||+||+.||++|+.+ |++++|||||+|||+..+
T Consensus 151 ~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~ 208 (261)
T cd03271 151 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV 208 (261)
T ss_pred HHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHH
Confidence 8999999986 57999999999999999999999996 799999999999998753
No 371
>KOG0065|consensus
Probab=99.89 E-value=2.3e-24 Score=199.23 Aligned_cols=154 Identities=20% Similarity=0.213 Sum_probs=132.4
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-C-CcccccccccccccccHHhhccceEEe
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-S-PFQAAQNSLLMTNIMHLFQYLSGIGYC 88 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~-~~~~g~i~~~g~~~~~~~~~~~~ig~v 88 (178)
+-...|+||+=-+.+|- ++||.|+||+||| ||+.++.+- . .--.|+|.++|.+..+ ...+|.+|||
T Consensus 802 ~~~qLL~~V~G~~kPG~----LTALMG~SGAGKT-------TLLdvLA~R~t~G~I~Gdi~i~G~p~~q-~tF~R~~GYv 869 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGV----LTALMGESGAGKT-------TLLDVLAGRKTGGYIEGDILISGFPKDQ-ETFARVSGYV 869 (1391)
T ss_pred cceEhhhcCceEecCCc----eeehhcCCCCchH-------HHHHHHhcCcccceEEeEEEECCeeCch-hhhcccccee
Confidence 44678999999999998 7889999999999 999999876 2 2367888999987765 5567889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcC---CCCCChhHHHHHHHHHcCCCccccCcCCC----CChHHHHHHHHHHHHhCCC-
Q psy860 89 PQFNGINEHLTAQEMLECFSALRG---IPGVKSGPIIDYWIDLLGLTEYRHRVSGR----YSGGNKRKLSTAMALIGDR- 160 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~----LSgGqkQRv~IAraL~~~P- 160 (178)
-|++.-.+.+||+|.+.|.+.++. ++.++..+.++++++.++|.+++|..++. ||..||+|+.||--|+.+|
T Consensus 870 qQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~ 949 (1391)
T KOG0065|consen 870 EQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPS 949 (1391)
T ss_pred ecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCc
Confidence 998766699999999999877763 23334447799999999999999999998 9999999999999999999
Q ss_pred CeEEeeCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~ 176 (178)
.||+|||||||||..+
T Consensus 950 ~ilFLDEPTSGLDsqa 965 (1391)
T KOG0065|consen 950 SILFLDEPTSGLDSQA 965 (1391)
T ss_pred eeEEecCCCCCccHHH
Confidence 9999999999999764
No 372
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.89 E-value=5e-24 Score=169.80 Aligned_cols=149 Identities=8% Similarity=0.010 Sum_probs=98.7
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh----------------ccCCcccc--------c
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI----------------RFSPFQAA--------Q 67 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~----------------~~~~~~~g--------~ 67 (178)
...++++++ ++ +.+|+|+||+||| ||+..+. ++..+.+| +
T Consensus 14 ~~~~~~~~~-----~~----~~~i~GpNGsGKS-------tll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 14 DQTVIEPFS-----PK----HNVVVGRNGSGKS-------NFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred cCcccccCC-----CC----cEEEECCCCCCHH-------HHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 345677776 45 7789999999999 7777665 23333344 3
Q ss_pred cccccccc----c-cHHhhccceEEecCCCCCCC-CCCHHHHHHHHHHhcCCCCCChh--HHHHHHHHHcCCCccccCcC
Q psy860 68 NSLLMTNI----M-HLFQYLSGIGYCPQFNGINE-HLTAQEMLECFSALRGIPGVKSG--PIIDYWIDLLGLTEYRHRVS 139 (178)
Q Consensus 68 i~~~g~~~----~-~~~~~~~~ig~v~Q~~~l~~-~ltv~e~l~~~~~~~~~~~~~~~--~~~~~~l~~~~L~~~~~~~~ 139 (178)
+.+++.+- . ....+++.+++++|+..+++ ..|..|...+.... +....... ....++.+.+++.+..++++
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~-gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~ 156 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESA-GFSRSNPYYIVPQGKINSLTNMKQDEQQEM 156 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHc-CCCCCCCcEEEEcCchHHhhhccccccccc
Confidence 33333211 0 11234567999999887777 46776655554443 33321110 01123444566666678899
Q ss_pred CCCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCCC
Q psy860 140 GRYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 140 ~~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~~ 177 (178)
.+||||||||++|||||+. +|+++++||||+||||.++
T Consensus 157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~ 198 (243)
T cd03272 157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYR 198 (243)
T ss_pred cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHH
Confidence 9999999999999999973 6899999999999999754
No 373
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=3e-25 Score=174.34 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=101.5
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhc-cceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYL-SGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~-~~ig~v~ 89 (178)
+...+++++++ + +.+|+||||+||| |++..+. +++|.+.. ..+ +.+++++
T Consensus 15 ~~~~~l~~~~~-----~----i~~ivGpNGaGKS-------Tll~~i~----------~~~G~~~~---~~~~~~i~~~~ 65 (212)
T cd03274 15 AGEQVIGPFHK-----S----FSAIVGPNGSGKS-------NVIDSML----------FVFGFRAS---KMRQKKLSDLI 65 (212)
T ss_pred CCCeeeccCCC-----C----eEEEECCCCCCHH-------HHHHHHH----------HHhccCHH---HhhhhhHHHHh
Confidence 44578888887 4 6779999999999 8887775 23333221 222 4699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHh--------cCCCCCChhH--HHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC-
Q psy860 90 QFNGINEHLTAQEMLECFSAL--------RGIPGVKSGP--IIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG- 158 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~--------~~~~~~~~~~--~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~- 158 (178)
|...+++.+++.++..++... .+........ ...++++.+++.+..++++..||+|||||++||+|++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~ 145 (212)
T cd03274 66 HNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALH 145 (212)
T ss_pred cCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhc
Confidence 998888888888866554322 2322211111 12566678888888889999999999999999999974
Q ss_pred ---CCCeEEeeCCCCCCCCCCC
Q psy860 159 ---DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ---~P~~lllDEPt~gLD~~~~ 177 (178)
.|+++++||||+||||.++
T Consensus 146 ~~~~p~ililDEPt~gLD~~~~ 167 (212)
T cd03274 146 HYKPTPLYVMDEIDAALDFRNV 167 (212)
T ss_pred ccCCCCEEEEcCCCcCCCHHHH
Confidence 5899999999999999754
No 374
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=2.3e-24 Score=173.04 Aligned_cols=139 Identities=10% Similarity=0.025 Sum_probs=101.1
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-ccccccccc-cc-cc--H-HhhccceEEecCCC---------CCCC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-AAQNSLLMT-NI-MH--L-FQYLSGIGYCPQFN---------GINE 96 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-~g~i~~~g~-~~-~~--~-~~~~~~ig~v~Q~~---------~l~~ 96 (178)
+.+|+|+||+||| |++..+.+++.++ .+.+...+. +. .. . ...+..+++++|++ .+.+
T Consensus 27 ~~~IvG~NGsGKS-------tll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~ 99 (251)
T cd03273 27 FNAITGLNGSGKS-------NILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYP 99 (251)
T ss_pred eEEEECCCCCCHH-------HHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCc
Confidence 7889999999999 9999988887765 456655544 21 11 0 11234799999985 3455
Q ss_pred CCCHHHHHHHHHHhcC-CC-CCChhHHHHHHHHHcCCC--------------------ccccCcCCCCChHHHHHHHHHH
Q psy860 97 HLTAQEMLECFSALRG-IP-GVKSGPIIDYWIDLLGLT--------------------EYRHRVSGRYSGGNKRKLSTAM 154 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~-~~-~~~~~~~~~~~l~~~~L~--------------------~~~~~~~~~LSgGqkQRv~IAr 154 (178)
.+||.+++........ .. +....+++.++++.+++. +..++++.+||+|||||++||+
T Consensus 100 ~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~ 179 (251)
T cd03273 100 EITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSL 179 (251)
T ss_pred eEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHH
Confidence 7788776654221111 11 223457888999999986 3456889999999999999999
Q ss_pred HHh----CCCCeEEeeCCCCCCCCCCC
Q psy860 155 ALI----GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 155 aL~----~~P~~lllDEPt~gLD~~~~ 177 (178)
||+ .+|+++++||||++||+.++
T Consensus 180 al~~~~~~~~~illlDEPt~~ld~~~~ 206 (251)
T cd03273 180 ILALLLFKPAPMYILDEVDAALDLSHT 206 (251)
T ss_pred HHHHhhccCCCEEEEeCCCcCCCHHHH
Confidence 998 57899999999999998653
No 375
>KOG0054|consensus
Probab=99.88 E-value=3.1e-23 Score=194.63 Aligned_cols=136 Identities=22% Similarity=0.182 Sum_probs=114.1
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
+-.+.|+||||+|++|+ +.||+|+.|+||| +|+..++|-.+..+|.+.++|. ++||||
T Consensus 532 ~~~~tL~dIn~~i~~G~----lvaVvG~vGsGKS-------SLL~AiLGEm~~~sG~v~v~gs-----------iaYv~Q 589 (1381)
T KOG0054|consen 532 SPEPTLKDINFEIKKGQ----LVAVVGPVGSGKS-------SLLSAILGEMPKLSGSVAVNGS-----------VAYVPQ 589 (1381)
T ss_pred CCcccccceeEEecCCC----EEEEECCCCCCHH-------HHHHHHhcCcccccceEEEcCe-----------EEEecc
Confidence 33459999999999999 8889999999999 9999999999999999988774 999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~ 159 (178)
.|.++ +-|++||+.|...+ ++++-+++++...|.+..+. +--+||||||||+++|||+.++
T Consensus 590 ~pWI~-ngTvreNILFG~~~-------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~ 661 (1381)
T KOG0054|consen 590 QPWIQ-NGTVRENILFGSPY-------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQD 661 (1381)
T ss_pred ccHhh-CCcHHHhhhcCccc-------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhcc
Confidence 99875 57999999875322 35566777776666433222 3458999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~ 176 (178)
.|+++||-|.|++|.+.
T Consensus 662 adIYLLDDplSAVDahv 678 (1381)
T KOG0054|consen 662 ADIYLLDDPLSAVDAHV 678 (1381)
T ss_pred CCEEEEcCcchhhhHhh
Confidence 99999999999999764
No 376
>KOG0927|consensus
Probab=99.86 E-value=3.5e-22 Score=171.32 Aligned_cols=145 Identities=16% Similarity=0.091 Sum_probs=112.7
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhcc
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLS 83 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~ 83 (178)
|.|++.. .+++++||-|+.++ -.|++||||+||+ |+++.+.+...|+.|.+.-.-.+
T Consensus 397 F~y~~~~---~iy~~l~fgid~~s----rvAlVGPNG~GKs-------TLlKl~~gdl~p~~G~vs~~~H~--------- 453 (614)
T KOG0927|consen 397 FGYSDNP---MIYKKLNFGIDLDS----RVALVGPNGAGKS-------TLLKLITGDLQPTIGMVSRHSHN--------- 453 (614)
T ss_pred cCCCCcc---hhhhhhhcccCccc----ceeEecCCCCchh-------hhHHHHhhccccccccccccccc---------
Confidence 4454443 67888999999888 7889999999999 99999999999999998544332
Q ss_pred ceEEecCCC--CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 84 GIGYCPQFN--GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 84 ~ig~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
.+++.-|+. .+.-+.++.|++.- . .+..+..+.+..++.++|+. +..+.++++||+|||.||..|+.++..|
T Consensus 454 ~~~~y~Qh~~e~ldl~~s~le~~~~---~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP 528 (614)
T KOG0927|consen 454 KLPRYNQHLAEQLDLDKSSLEFMMP---K--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQP 528 (614)
T ss_pred cchhhhhhhHhhcCcchhHHHHHHH---h--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCC
Confidence 234444443 23334555555432 1 12234567788999999998 6778999999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~ 176 (178)
.+|+|||||+|||..+
T Consensus 529 ~lLlLDEPtnhLDi~t 544 (614)
T KOG0927|consen 529 HLLLLDEPTNHLDIET 544 (614)
T ss_pred cEEEecCCCcCCCchh
Confidence 9999999999999864
No 377
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.86 E-value=2e-22 Score=171.43 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=128.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc-c--cHHh-hccceEEe
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI-M--HLFQ-YLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~-~--~~~~-~~~~ig~v 88 (178)
.+.+++|||+|++|| +.+|.|..|-|.+ .|+-.+.|+.++.+|.|.++|+++ . ...+ .+.+++||
T Consensus 271 ~~~v~~vs~~Vr~GE----IvGIAGV~GNGQ~-------eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~V 339 (501)
T COG3845 271 VTAVKDVSFEVRAGE----IVGIAGVAGNGQS-------ELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYV 339 (501)
T ss_pred CceeeeeeeEEecCc----EEEEEecCCCCHH-------HHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccC
Confidence 367999999999999 5668889999999 788889999988889999999997 2 2333 45789999
Q ss_pred cCCC---CCCCCCCHHHHHHHHHHh-------cCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHh
Q psy860 89 PQFN---GINEHLTAQEMLECFSAL-------RGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 89 ~Q~~---~l~~~ltv~e~l~~~~~~-------~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
|++. .+.+.+|+.||+.+.... +.+...+..+.+.++++.|++. ...+.++.+|||||+||+.+||-|.
T Consensus 340 PedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~ 419 (501)
T COG3845 340 PEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA 419 (501)
T ss_pred ChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc
Confidence 9985 688999999999874332 1234456667788999999997 6667889999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~ 176 (178)
.+|++|+..+||-|||.-+
T Consensus 420 ~~p~lLI~~qPTrGLDvgA 438 (501)
T COG3845 420 RRPDLLIAAQPTRGLDVGA 438 (501)
T ss_pred cCCCEEEEcCCCccccHHH
Confidence 9999999999999999754
No 378
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.83 E-value=3.3e-21 Score=169.01 Aligned_cols=139 Identities=19% Similarity=0.155 Sum_probs=112.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
++-+++.||+|+.|| -.-|.|+|||||| +|++.+.|+-|--+|.+..- .-..+-|+||.|
T Consensus 406 ~~ll~~l~~~v~~G~----~llI~G~SG~GKT-------sLlRaiaGLWP~g~G~I~~P---------~~~~~lflpQ~P 465 (604)
T COG4178 406 QTLLSELNFEVRPGE----RLLITGESGAGKT-------SLLRALAGLWPWGSGRISMP---------ADSALLFLPQRP 465 (604)
T ss_pred CeeeccceeeeCCCC----EEEEECCCCCCHH-------HHHHHHhccCccCCCceecC---------CCCceEEecCCC
Confidence 478999999999999 6669999999999 99999999988777776322 112589999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCc------CCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRV------SGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~------~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
.+... |.+|.++++.... .-..+.+.++|.++||.+..++. -..||+||||||++||.|.++|++++||
T Consensus 466 Y~p~G-tLre~l~YP~~~~----~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LD 540 (604)
T COG4178 466 YLPQG-TLREALCYPNAAP----DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLD 540 (604)
T ss_pred CCCCc-cHHHHHhCCCCCC----CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEe
Confidence 87666 9999988653221 12345688899999997654432 2469999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 167 LPFSSQNLYN 176 (178)
Q Consensus 167 EPt~gLD~~~ 176 (178)
|.||+||+.+
T Consensus 541 EATsALDe~~ 550 (604)
T COG4178 541 EATSALDEET 550 (604)
T ss_pred cchhccChHH
Confidence 9999999875
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.82 E-value=2e-21 Score=151.80 Aligned_cols=126 Identities=13% Similarity=0.036 Sum_probs=88.3
Q ss_pred hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhh----hccCCcccccccccccccccHHhhccceEEecCCC---
Q psy860 20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSA----IRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN--- 92 (178)
Q Consensus 20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~----~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~--- 92 (178)
++++.+| +.+|.|+||+||| ||+..+ .|..+|+.+.+..+...+. ....+..++++||++
T Consensus 17 ~l~~~~g-----~~~i~G~NGsGKT-------TLl~ai~~~l~G~~~~~~~~~~~~~~~i~-~~~~~~~v~~~f~~~~~~ 83 (204)
T cd03240 17 EIEFFSP-----LTLIVGQNGAGKT-------TIIEALKYALTGELPPNSKGGAHDPKLIR-EGEVRAQVKLAFENANGK 83 (204)
T ss_pred EEecCCC-----eEEEECCCCCCHH-------HHHHHHHHHHcCCCCcccccccchHHHHh-CCCCcEEEEEEEEeCCCC
Confidence 3445555 6779999999999 888776 4777777765541111111 123345799999987
Q ss_pred --CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHH------HHHHHHHhCCCCeEE
Q psy860 93 --GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK------LSTAMALIGDRDDGF 164 (178)
Q Consensus 93 --~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR------v~IAraL~~~P~~ll 164 (178)
.+...+|+.+++.+. + .+.+++.+ ++.+.+||+||+|| ++||+|++.+|++++
T Consensus 84 ~~~v~r~~~~~~~~~~~------~----~~~~~~~~---------~~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 84 KYTITRSLAILENVIFC------H----QGESNWPL---------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred EEEEEEEhhHhhceeee------c----hHHHHHHH---------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 233445777776431 1 12233332 77889999999996 789999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
+||||++||+.++
T Consensus 145 lDEP~~~LD~~~~ 157 (204)
T cd03240 145 LDEPTTNLDEENI 157 (204)
T ss_pred EcCCccccCHHHH
Confidence 9999999999753
No 380
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.81 E-value=7.4e-21 Score=160.79 Aligned_cols=141 Identities=14% Similarity=0.167 Sum_probs=109.4
Q ss_pred ccccchhhhccHHHHHH-HhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 14 PQFNGINEHLTAQEMLE-CFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~-~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
..+.+..++++.|++.. -...++|+||.||| |+.+.+.|..+|++|. ..+ + +++|-||.-
T Consensus 350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKT-------TFvk~LAG~ikPdeg~----~~~---~-----~vSyKPQyI 410 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKT-------TFVKLLAGVIKPDEGS----EED---L-----KVSYKPQYI 410 (591)
T ss_pred eecCceEEEecCCeeecceEEEEECCCCcchH-------HHHHHHhccccCCCCC----Ccc---c-----eEeecceee
Confidence 56667777666555211 04668999999999 9999999999999987 111 1 699999986
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.-..+.||.+.+.-..... ... .-.-.++++-++|.+..++++.+||||+.|||+||.||..+.|+.+||||++.|
T Consensus 411 ~~~~~gtV~~~l~~~~~~~-~~~---s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~L 486 (591)
T COG1245 411 SPDYDGTVEDLLRSAIRSA-FGS---SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYL 486 (591)
T ss_pred cCCCCCcHHHHHHHhhhhh-ccc---chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhc
Confidence 6667889998876533221 111 112445677889999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|...|
T Consensus 487 DvEqR 491 (591)
T COG1245 487 DVEQR 491 (591)
T ss_pred cHHHH
Confidence 98643
No 381
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.81 E-value=1.2e-20 Score=146.67 Aligned_cols=132 Identities=11% Similarity=0.022 Sum_probs=88.4
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQF 91 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q~ 91 (178)
-++++++++..| +.+|+|+||+||| |++..+.....++... ...+...... ......|.+.+|+
T Consensus 11 ~~~~~~l~f~~g-----l~~i~G~NGsGKS-------tll~ai~~~l~~~~~~-~~r~~~~~~~i~~~~~~~~i~~~~~~ 77 (198)
T cd03276 11 CHRHLQIEFGPR-----VNFIVGNNGSGKS-------AILTALTIGLGGKASD-TNRGSSLKDLIKDGESSAKITVTLKN 77 (198)
T ss_pred ceeeeEEecCCC-----eEEEECCCCCcHH-------HHHHHHHHHhcCCccc-ccccccHHHHhhCCCCeEEEEEEEEc
Confidence 346677777776 5679999999999 6666554333222110 0111111111 1112358888888
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH----hCCCCeEEeeC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL----IGDRDDGFQKL 167 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL----~~~P~~lllDE 167 (178)
..++++ .......+.++++++. .+..++++.+||+|||||++||+|+ +.+|++++|||
T Consensus 78 ~~~~~~---------------~~~~~~~~~~~~~l~~---~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDE 139 (198)
T cd03276 78 QGLDAN---------------PLCVLSQDMARSFLTS---NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDE 139 (198)
T ss_pred CCccCC---------------cCCHHHHHHHHHHhcc---ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 776551 0111123557777776 6677899999999999999999999 59999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 140 P~~glD~~~~ 149 (198)
T cd03276 140 FDVFMDMVNR 149 (198)
T ss_pred cccccCHHHH
Confidence 9999998653
No 382
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.80 E-value=8.8e-21 Score=148.85 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=87.8
Q ss_pred cchhhhcc-HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCccccccccc-ccccccHHhhccceEEecCCCC
Q psy860 17 NGINEHLT-AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQNSLL-MTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 17 ~~v~~~~~-~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~i~~~-g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
++|+|... .|+ +.+|+|+||+||| |+++.+... ..+..+..... ....-...+.+..|+++||.+.
T Consensus 18 ~~i~~~~~~~~~----~~~i~G~NGsGKS-------Tll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~ 86 (213)
T cd03279 18 QVIDFTGLDNNG----LFLICGPTGAGKS-------TILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGG 86 (213)
T ss_pred eEEeCCCCCccC----EEEEECCCCCCHH-------HHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECC
Confidence 66777654 477 8889999999999 888888743 23333333221 0111111233456999998763
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHH-HHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC----------CCCe
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIID-YWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG----------DRDD 162 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~-~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~----------~P~~ 162 (178)
... ++... .+.+. .+..+ ..++..++.+..++++.+||+|||||++|||||+. +|++
T Consensus 87 ~~~--~~~r~-------~gl~~---~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~ 154 (213)
T cd03279 87 KKY--RVERS-------RGLDY---DQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEA 154 (213)
T ss_pred eEE--EEEEe-------cCCCH---HHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE
Confidence 211 11111 02211 11111 12344456677789999999999999999999985 6789
Q ss_pred EEeeCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYN 176 (178)
Q Consensus 163 lllDEPt~gLD~~~ 176 (178)
++|||||++||+.+
T Consensus 155 lllDEp~~~lD~~~ 168 (213)
T cd03279 155 LFIDEGFGTLDPEA 168 (213)
T ss_pred EEEeCCcccCCHHH
Confidence 99999999999865
No 383
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.78 E-value=2e-19 Score=165.89 Aligned_cols=74 Identities=19% Similarity=0.123 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCC---CeEEeeCCCCCCC
Q psy860 98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDR---DDGFQKLPFSSQN 173 (178)
Q Consensus 98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P---~~lllDEPt~gLD 173 (178)
+|+.|++.++..... .....+.++.+||.. ..++++.+|||||+||+.||++|+.+| +++||||||+|||
T Consensus 792 ltv~E~l~~f~~~~~------i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD 865 (943)
T PRK00349 792 MTVEEALEFFEAIPK------IARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 865 (943)
T ss_pred CcHHHHHHHHHhchh------hhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCC
Confidence 678888887654332 123467899999975 578999999999999999999999999 9999999999999
Q ss_pred CCCC
Q psy860 174 LYNT 177 (178)
Q Consensus 174 ~~~~ 177 (178)
+..+
T Consensus 866 ~~~~ 869 (943)
T PRK00349 866 FEDI 869 (943)
T ss_pred HHHH
Confidence 8753
No 384
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=1.9e-20 Score=145.34 Aligned_cols=160 Identities=10% Similarity=0.038 Sum_probs=113.1
Q ss_pred hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc----cccccccccccccc--HH
Q psy860 6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF----QAAQNSLLMTNIMH--LF 79 (178)
Q Consensus 6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~----~~g~i~~~g~~~~~--~~ 79 (178)
+.+.-|...++++||+++.+|| +.+++|.+|+||| -+.+.+.+..+- ++-...++..+.-+ ++
T Consensus 13 ~~TsqG~vK~VD~v~ltlnEGE----i~GLVGESGSGKS-------LiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 13 FKTSQGWVKAVDRVSMTLNEGE----IRGLVGESGSGKS-------LIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred EecCCCceEeeeeeeeeeccce----eeeeeccCCCchh-------HHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 3456677899999999999999 5559999999999 555666666442 22233344333322 22
Q ss_pred hh----ccceEEecCCCC--CCCCCCHHH-HHHHH------HHhcCCCCCChhHHHHHHHHHcCCCc---cccCcCCCCC
Q psy860 80 QY----LSGIGYCPQFNG--INEHLTAQE-MLECF------SALRGIPGVKSGPIIDYWIDLLGLTE---YRHRVSGRYS 143 (178)
Q Consensus 80 ~~----~~~ig~v~Q~~~--l~~~ltv~e-~l~~~------~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~~~LS 143 (178)
+. .+.|+++||+|. +.|..++-. .+.-. .+++ ....+.++++-++|.++|+.+ .+..++.+|.
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWW-q~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElT 160 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWW-QRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELT 160 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHh-hhhchhHHHHHHHHHHhccccHHHHHHhCcchhc
Confidence 22 245889999985 455444422 22211 1111 111244667889999999974 5568999999
Q ss_pred hHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 144 GGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 144 gGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
-|+-|||+||.|++.+|++||.||||+.+||.++
T Consensus 161 eGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq 194 (330)
T COG4170 161 EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQ 194 (330)
T ss_pred cCcceeeeeehhhccCCceEeccCCCcccCccHH
Confidence 9999999999999999999999999999999763
No 385
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.77 E-value=2.9e-19 Score=171.69 Aligned_cols=83 Identities=17% Similarity=0.049 Sum_probs=65.5
Q ss_pred CCCCCCHHHHHHHHHHh---cCCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHh---CCCCeEEee
Q psy860 94 INEHLTAQEMLECFSAL---RGIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALI---GDRDDGFQK 166 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~---~~P~~lllD 166 (178)
.+...||.|++.+...- .+....+..+++ ++++.+++.+. .++.+.+|||||||||.||+||+ .+|+++|||
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILD 837 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLD 837 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEe
Confidence 35567899988874331 222233445556 58899999876 79999999999999999999997 699999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 838 EPTsGLD~~~~ 848 (1809)
T PRK00635 838 EPTTGLHTHDI 848 (1809)
T ss_pred CCCCCCCHHHH
Confidence 99999998753
No 386
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.77 E-value=1.6e-20 Score=141.89 Aligned_cols=144 Identities=14% Similarity=0.148 Sum_probs=118.1
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQFN 92 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~~ 92 (178)
-|--.|.++.+|| ...++||||+||| ||+..+.|+++ -+|.|.++|.+.... .++.++-+|+.|+.
T Consensus 14 RL~plS~qv~aGe----~~HliGPNGaGKS-------TLLA~lAGm~~-~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq 81 (248)
T COG4138 14 RLGPLSGEVRAGE----ILHLVGPNGAGKS-------TLLARMAGMTS-GSGSIQFAGQPLEAWSATELARHRAYLSQQQ 81 (248)
T ss_pred cccccccccccce----EEEEECCCCccHH-------HHHHHHhCCCC-CCceEEECCcchhHHhHhHHHHHHHHHhhcc
Confidence 4556788999999 6669999999999 99999999885 569999999988653 56777789999987
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC-----CC--CeEEe
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG-----DR--DDGFQ 165 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~-----~P--~~lll 165 (178)
...+.+.|+..+... .+.++....++++...+++.+...+.+++||||+=|||-+|....+ || ++|++
T Consensus 82 ~p~f~mpV~~YL~L~-----qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 82 TPPFAMPVWHYLTLH-----QPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred CCcchhhhhhhhhhc-----CchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 766778888777542 2334445567888889999999999999999999999999986654 33 79999
Q ss_pred eCCCCCCCCC
Q psy860 166 KLPFSSQNLY 175 (178)
Q Consensus 166 DEPt~gLD~~ 175 (178)
|||.++||+.
T Consensus 157 DEP~~~LDvA 166 (248)
T COG4138 157 DEPMNSLDVA 166 (248)
T ss_pred cCCCcchhHH
Confidence 9999999975
No 387
>KOG0066|consensus
Probab=99.76 E-value=5.5e-19 Score=149.39 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=108.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.+.+..++|-|.--. -.||+||||+||| |+++.++|-+.|+.|+..-+ .|-+||+.-|..
T Consensus 600 kpLFkkldFGiDmdS----RiaIVGPNGVGKS-------TlLkLL~Gkl~P~~GE~RKn---------hrL~iG~FdQh~ 659 (807)
T KOG0066|consen 600 KPLFKKLDFGIDMDS----RIAIVGPNGVGKS-------TLLKLLIGKLDPNDGELRKN---------HRLRIGWFDQHA 659 (807)
T ss_pred Cchhhcccccccccc----eeEEECCCCccHH-------HHHHHHhcCCCCCcchhhcc---------ceeeeechhhhh
Confidence 477888888887666 5789999999999 99999999999999986222 233699988875
Q ss_pred --CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-CcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 93 --GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-RVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 93 --~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
.+...-|..|.+. +.+.++ .+.+...|-.+||...++ -.+..||||||-||++|-.-+..|++|||||||
T Consensus 660 ~E~L~~Eetp~EyLq---r~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPT 732 (807)
T KOG0066|consen 660 NEALNGEETPVEYLQ---RKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPT 732 (807)
T ss_pred HHhhccccCHHHHHH---HhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCC
Confidence 3445556555543 233443 566888899999975554 468899999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 170 SSQNLYN 176 (178)
Q Consensus 170 ~gLD~~~ 176 (178)
+.||+.+
T Consensus 733 NNLDIES 739 (807)
T KOG0066|consen 733 NNLDIES 739 (807)
T ss_pred CCcchhh
Confidence 9999875
No 388
>KOG0062|consensus
Probab=99.76 E-value=4e-19 Score=151.92 Aligned_cols=149 Identities=19% Similarity=0.140 Sum_probs=99.2
Q ss_pred hhhhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhh
Q psy860 2 HLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQY 81 (178)
Q Consensus 2 ~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~ 81 (178)
|...++-.+|..-.|++-++++..|. -..+.|+||+||| ||++.+.. |.+.....+. +.
T Consensus 82 ~~~~fdLa~G~k~LL~~a~L~L~~Gr----RYGLvGrNG~GKs-------TLLRaia~------~~v~~f~veq----E~ 140 (582)
T KOG0062|consen 82 HIDNFDLAYGGKILLNKANLTLSRGR----RYGLVGRNGIGKS-------TLLRAIAN------GQVSGFHVEQ----EV 140 (582)
T ss_pred eeeeeeeeecchhhhcCCceeeeccc----ccceeCCCCCcHH-------HHHHHHHh------cCcCccCchh----he
Confidence 45556667788889999999999998 5569999999999 99998875 4442222210 00
Q ss_pred ccceEEecCC-CCCCCCCCHHHHHHHHHHhcCCCCC-ChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 82 LSGIGYCPQF-NGINEHLTAQEMLECFSALRGIPGV-KSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 82 ~~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
+ --+++-. ..+..+..+.+.+.- -..+... ...+...++|..+|.. +-..++..+||||.|.|+++||||..
T Consensus 141 ~--g~~t~~~~~~l~~D~~~~dfl~~---e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~ 215 (582)
T KOG0062|consen 141 R--GDDTEALQSVLESDTERLDFLAE---EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFA 215 (582)
T ss_pred e--ccchHHHhhhhhccHHHHHHHHh---hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhc
Confidence 0 0011100 012222223222221 1111111 2233344488999997 56678889999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~ 176 (178)
+||+|+|||||+.||+.+
T Consensus 216 ~pDlLLLDEPTNhLDv~a 233 (582)
T KOG0062|consen 216 KPDLLLLDEPTNHLDVVA 233 (582)
T ss_pred CCCEEeecCCcccchhHH
Confidence 999999999999999865
No 389
>KOG0927|consensus
Probab=99.76 E-value=1.1e-19 Score=156.04 Aligned_cols=153 Identities=16% Similarity=0.096 Sum_probs=96.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc--ccccccccc-HHh-h-------
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN--SLLMTNIMH-LFQ-Y------- 81 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i--~~~g~~~~~-~~~-~------- 81 (178)
.+.++|+.|++..|+ -++|+|+||+||+ |+++++.+-..|..-.+ +..-+++.. ..+ +
T Consensus 88 ~~l~kd~~~El~~g~----rygLiG~nG~Gks-------t~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~ 156 (614)
T KOG0927|consen 88 VELIKDVTLELNRGR----RYGLIGPNGSGKS-------TFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMET 156 (614)
T ss_pred ceeeeeeeEEecCCc----eEEEEcCCCCcHh-------HHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhh
Confidence 478999999999999 5669999999999 99999888766643332 222222211 000 0
Q ss_pred ---ccceEEecCCCCCC-CCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCC-CccccCcCCCCChHHHHHHHHHHHH
Q psy860 82 ---LSGIGYCPQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL-TEYRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 82 ---~~~ig~v~Q~~~l~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-~~~~~~~~~~LSgGqkQRv~IAraL 156 (178)
+.++.|.-++.... +...-.+....+.+...+.......++..+|..++- .+..++.+.+||||+|.|+++||||
T Consensus 157 ~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~L 236 (614)
T KOG0927|consen 157 DHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARAL 236 (614)
T ss_pred HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHH
Confidence 01111111110000 110000001111122222333444556666766665 4788999999999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCCCC
Q psy860 157 IGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 157 ~~~P~~lllDEPt~gLD~~~ 176 (178)
..+|++|+|||||++||+.+
T Consensus 237 f~kP~LLLLDEPtnhLDleA 256 (614)
T KOG0927|consen 237 FQKPDLLLLDEPTNHLDLEA 256 (614)
T ss_pred hcCCCEEEecCCccCCCHHH
Confidence 99999999999999999865
No 390
>KOG0062|consensus
Probab=99.74 E-value=1.6e-18 Score=148.20 Aligned_cols=139 Identities=13% Similarity=-0.018 Sum_probs=109.1
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
..+.++++.++.-+ -.++.|+||.||+ |+++.+.+-..|..|.+.+.+ |.+|+|.+|+..
T Consensus 378 ~~~~~~~~d~e~~s----Ri~~vg~ng~gks-------t~lKi~~~~l~~~rgi~~~~~---------r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 378 QWRKQLGLDRESDS----RISRVGENGDGKS-------TLLKILKGDLTPTRGIVGRHP---------RLRIKYFAQHHV 437 (582)
T ss_pred hhhhccCCccchhh----hhheeccCchhHH-------HHHHHHhccCCcccceeeecc---------cceecchhHhhh
Confidence 67788888877666 4669999999999 999999987788888775443 347999999864
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
=+.+++|-+.-.+.....|. .++.+++.+..+||+ +.+.+.+..||||||-||++|....++|.+|+|||||+.|
T Consensus 438 d~l~~~v~~vd~~~~~~pG~----~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhL 513 (582)
T KOG0062|consen 438 DFLDKNVNAVDFMEKSFPGK----TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHL 513 (582)
T ss_pred hHHHHHhHHHHHHHHhCCCC----CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccc
Confidence 33444444333322223332 466788899999997 7888889999999999999999999999999999999999
Q ss_pred CCCC
Q psy860 173 NLYN 176 (178)
Q Consensus 173 D~~~ 176 (178)
|..+
T Consensus 514 D~ds 517 (582)
T KOG0062|consen 514 DRDS 517 (582)
T ss_pred cHHH
Confidence 9754
No 391
>KOG0060|consensus
Probab=99.71 E-value=3.9e-18 Score=147.56 Aligned_cols=144 Identities=13% Similarity=-0.010 Sum_probs=110.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
...+|.||+|+.|+++- |.|+|||||| .|++.+.|+-+-..|.+.-..+.- -+.+-|+||.|.
T Consensus 449 ~lie~Ls~~V~~g~~LL----ItG~sG~GKt-------SLlRvlggLWp~~~G~l~k~~~~~------~~~lfflPQrPY 511 (659)
T KOG0060|consen 449 LLIENLSLEVPSGQNLL----ITGPSGCGKT-------SLLRVLGGLWPSTGGKLTKPTDGG------PKDLFFLPQRPY 511 (659)
T ss_pred eeeeeeeeEecCCCeEE----EECCCCCchh-------HHHHHHhcccccCCCeEEecccCC------CCceEEecCCCC
Confidence 57888999999999766 9999999999 888999898877777763222110 035899999987
Q ss_pred CCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCccccCc-----------CCCCChHHHHHHHHHHHHhCCCC
Q psy860 94 INEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTEYRHRV-----------SGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+... |.+|.+.++... ....+....+++.+.|+.++|.+..++- ...||+|||||++.||-+.++|+
T Consensus 512 mt~G-TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk 590 (659)
T KOG0060|consen 512 MTLG-TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPK 590 (659)
T ss_pred cccc-chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCc
Confidence 6555 889988776322 2222333456788888888776543322 34799999999999999999999
Q ss_pred eEEeeCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLY 175 (178)
Q Consensus 162 ~lllDEPt~gLD~~ 175 (178)
+-||||-||++|..
T Consensus 591 ~AiLDE~TSAv~~d 604 (659)
T KOG0060|consen 591 FAILDECTSAVTED 604 (659)
T ss_pred eEEeechhhhccHH
Confidence 99999999999864
No 392
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.70 E-value=9.3e-18 Score=154.75 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=60.0
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhC---CCCeEEeeCCCCCCC
Q psy860 98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIG---DRDDGFQKLPFSSQN 173 (178)
Q Consensus 98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~---~P~~lllDEPt~gLD 173 (178)
+|+.|.+.|+.....+ ....++++.+||.. ..++++.+|||||+|||.||++|+. +|++++|||||+|||
T Consensus 790 ~tv~e~~~f~~~~~~i------~~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD 863 (924)
T TIGR00630 790 MTVEEAYEFFEAVPSI------SRKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLH 863 (924)
T ss_pred CcHHHHHHHHHhccch------hHHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCC
Confidence 6677777776543221 23567889999975 4789999999999999999999997 599999999999999
Q ss_pred CCCC
Q psy860 174 LYNT 177 (178)
Q Consensus 174 ~~~~ 177 (178)
+..+
T Consensus 864 ~~~~ 867 (924)
T TIGR00630 864 FDDI 867 (924)
T ss_pred HHHH
Confidence 8753
No 393
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.69 E-value=3e-18 Score=137.36 Aligned_cols=135 Identities=13% Similarity=-0.002 Sum_probs=80.8
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc--cccH-------HhhccceEEecCCCC-CCCCCCHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN--IMHL-------FQYLSGIGYCPQFNG-INEHLTAQ 101 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~--~~~~-------~~~~~~ig~v~Q~~~-l~~~ltv~ 101 (178)
+.+|+|+||+||| ||+..+.++..++.+.+...+.. +..- .+..-.+.|..|++. .....++.
T Consensus 24 ~~~i~G~NGsGKS-------tll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~ 96 (247)
T cd03275 24 FTCIIGPNGSGKS-------NLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIIT 96 (247)
T ss_pred eEEEECCCCCCHH-------HHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEE
Confidence 7889999999999 88888887776665655332211 1000 011112334334321 11111111
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc----------------------cccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 102 EMLECFSALRGIPGVKSGPIIDYWIDLLGLTE----------------------YRHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~----------------------~~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
+....+ .+.+ .....+.++++++.+++.. ..++++.+||+|||||++||+|++.+
T Consensus 97 ~~~~~~-~ing--k~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~ 173 (247)
T cd03275 97 GGSSSY-RING--KVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIH 173 (247)
T ss_pred CCceEE-EECC--EEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHh
Confidence 110000 0111 1122445677888888742 12344589999999999999999875
Q ss_pred ----CCeEEeeCCCCCCCCCC
Q psy860 160 ----RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 160 ----P~~lllDEPt~gLD~~~ 176 (178)
|++++|||||+|||+.+
T Consensus 174 ~~~~p~~lllDEPt~~LD~~~ 194 (247)
T cd03275 174 SYQPAPFFVLDEVDAALDNTN 194 (247)
T ss_pred ccCCCCEEEEecccccCCHHH
Confidence 99999999999999864
No 394
>KOG0065|consensus
Probab=99.68 E-value=5.1e-18 Score=157.69 Aligned_cols=151 Identities=19% Similarity=0.243 Sum_probs=125.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc---ccccccccccccccHHhhccceEEecC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF---QAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~---~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
++++|+|.-++.||+ .-+.|+.|+||+ |+++.+.|-+.. ..|.+.++|.+.+.... ++.++|++|
T Consensus 129 ~il~~~sg~~~pg~m----~lvLG~pgsG~t-------tllkal~g~~~~~~~~~~~isy~G~~~~e~~~-~~~~aY~~e 196 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEM----TLVLGPPGSGKT-------TLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-KKTVAYNSE 196 (1391)
T ss_pred eeecCcceeEcCCce----EEEecCCCCchH-------HHHHHHhCCCcccccCCCceeECCCccccccc-CceEEeccc
Confidence 689999999999994 459999999999 999998887332 34588999998877655 678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCC----CCCChhH----HHHHHHHHcCCCccccCcCC-----CCChHHHHHHHHHHHHh
Q psy860 91 FNGINEHLTAQEMLECFSALRGI----PGVKSGP----IIDYWIDLLGLTEYRHRVSG-----RYSGGNKRKLSTAMALI 157 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~----~~~~~~~----~~~~~l~~~~L~~~~~~~~~-----~LSgGqkQRv~IAraL~ 157 (178)
++.-++.+||+|.+.|.++.++. +.-..++ ..+.+++.+||++.+|..++ -.|||||+||.+|-+++
T Consensus 197 ~DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v 276 (1391)
T KOG0065|consen 197 QDVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLV 276 (1391)
T ss_pred cccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeee
Confidence 99889999999999998876543 1111122 35678999999988887765 58999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~ 176 (178)
.+|++++.||+|.|||..+
T Consensus 277 ~~~~~~~~De~t~GLDSsT 295 (1391)
T KOG0065|consen 277 GPASILFWDEITRGLDSST 295 (1391)
T ss_pred cCcceeeeecccccccHHH
Confidence 9999999999999999764
No 395
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.68 E-value=6.9e-18 Score=140.97 Aligned_cols=139 Identities=20% Similarity=0.137 Sum_probs=112.6
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--cHHhhccceEEecCCCC
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--HLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~~~~~~~~ig~v~Q~~~ 93 (178)
+.-||++|..|| ++=|+|-|||||| |+++.+.|+.+|++|+|.+||+++. ++.++|+-++-||.+..
T Consensus 339 vgPiNl~ikrGe----lvFliG~NGsGKS-------T~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyh 407 (546)
T COG4615 339 VGPINLTIKRGE----LVFLIGGNGSGKS-------TLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYH 407 (546)
T ss_pred ecceeeEEecCc----EEEEECCCCCcHH-------HHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHh
Confidence 556899999999 5669999999999 9999999999999999999999885 36778877777777766
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc---cccCcC--CCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE---YRHRVS--GRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~--~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
+|+.+ .+.......+.++.+|+++.+.+ ..|... -.||.|||+|+++--|++-+.++++|||=
T Consensus 408 LF~~l------------l~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEW 475 (546)
T COG4615 408 LFDQL------------LGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEW 475 (546)
T ss_pred hhHhh------------hCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehh
Confidence 65532 22223344567888888887753 344443 46999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
.+-.||.-|
T Consensus 476 AADQDPaFR 484 (546)
T COG4615 476 AADQDPAFR 484 (546)
T ss_pred hccCChHHH
Confidence 999999754
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.67 E-value=1e-17 Score=141.93 Aligned_cols=135 Identities=19% Similarity=0.160 Sum_probs=93.8
Q ss_pred ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc-----------cccccccccH-Hhhcc---ceEE
Q psy860 23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN-----------SLLMTNIMHL-FQYLS---GIGY 87 (178)
Q Consensus 23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i-----------~~~g~~~~~~-~~~~~---~ig~ 87 (178)
.+.|+ ..+|+|+||.||| |.++.+.|-+.|.-|.- .+-|....+. .++.. ++..
T Consensus 97 pr~G~----V~GilG~NGiGKs-------TalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~ 165 (591)
T COG1245 97 PRPGK----VVGILGPNGIGKS-------TALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVH 165 (591)
T ss_pred CCCCc----EEEEEcCCCccHH-------HHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceec
Confidence 45677 4559999999999 99999999988876663 1122222211 11211 1333
Q ss_pred ecCCCCCCC---CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 88 CPQFNGINE---HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 88 v~Q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
-||.-...| .=+|.|.+.- ...+-..+++.+.++|.+..++.+++||||+.|||+||.|++.+.|+.+
T Consensus 166 K~QYVd~iPk~~KG~v~elLk~---------~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~ 236 (591)
T COG1245 166 KPQYVDLIPKVVKGKVGELLKK---------VDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYF 236 (591)
T ss_pred chHHHHHHHHHhcchHHHHHHh---------hhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEE
Confidence 344322222 1144444321 1122357888999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
+|||||.||+..|
T Consensus 237 FDEpsSyLDi~qR 249 (591)
T COG1245 237 FDEPSSYLDIRQR 249 (591)
T ss_pred EcCCcccccHHHH
Confidence 9999999998643
No 397
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.56 E-value=2.9e-16 Score=122.06 Aligned_cols=109 Identities=9% Similarity=-0.059 Sum_probs=70.7
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-ccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-RFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
.+-++||++..|+. ..+|.|+||+||| |+++.+. ....++.|. ++|-...
T Consensus 16 ~~~~~~~~i~~~~~---~~~ltG~Ng~GKS-------tll~~i~~~~~~~~~G~-------------------~vp~~~~ 66 (200)
T cd03280 16 KVVPLDIQLGENKR---VLVITGPNAGGKT-------VTLKTLGLLTLMAQSGL-------------------PIPAAEG 66 (200)
T ss_pred ceEcceEEECCCce---EEEEECCCCCChH-------HHHHHHHHHHHHHHcCC-------------------Ccccccc
Confidence 45588999999841 5779999999999 8888765 111111110 2221100
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN 173 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD 173 (178)
... . ..++.+..++..+..+...+++|+||+|++.|++++ .+|+++++||||+|+|
T Consensus 67 ----------~~~----~---------~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD 122 (200)
T cd03280 67 ----------SSL----P---------VFENIFADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTD 122 (200)
T ss_pred ----------ccC----c---------CccEEEEecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCC
Confidence 000 0 000111223344445667789999999999999885 8999999999999999
Q ss_pred CCC
Q psy860 174 LYN 176 (178)
Q Consensus 174 ~~~ 176 (178)
+..
T Consensus 123 ~~~ 125 (200)
T cd03280 123 PVE 125 (200)
T ss_pred HHH
Confidence 865
No 398
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.52 E-value=2.3e-15 Score=118.38 Aligned_cols=45 Identities=11% Similarity=-0.008 Sum_probs=38.1
Q ss_pred ccccCcCCCCChHHHHHHHHHHHH----hCCCCeEEeeCCCCCCCCCCC
Q psy860 133 EYRHRVSGRYSGGNKRKLSTAMAL----IGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 133 ~~~~~~~~~LSgGqkQRv~IAraL----~~~P~~lllDEPt~gLD~~~~ 177 (178)
+..+..+.+||+||||++.+|++| +.+|+++++||||+|||+.++
T Consensus 118 ~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~ 166 (213)
T cd03277 118 QLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNE 166 (213)
T ss_pred CccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHH
Confidence 445677899999999999877554 589999999999999999754
No 399
>KOG0064|consensus
Probab=99.51 E-value=2.3e-15 Score=129.54 Aligned_cols=137 Identities=15% Similarity=0.112 Sum_probs=93.5
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
.++...+|.|+.|- =.-|.|||||||| .|.+.+.|+-|--.|...+ . ....|-|+||.|.
T Consensus 496 vvv~~Ltf~i~~G~----hLLItGPNGCGKS-------SLfRILggLWPvy~g~L~~------P---~~~~mFYIPQRPY 555 (728)
T KOG0064|consen 496 VLVPKLTFQIEPGM----HLLITGPNGCGKS-------SLFRILGGLWPVYNGLLSI------P---RPNNIFYIPQRPY 555 (728)
T ss_pred eeecceeEEecCCc----eEEEECCCCccHH-------HHHHHHhccCcccCCeeec------C---CCcceEeccCCCc
Confidence 36778889999887 4459999999999 6667777776654444311 1 1225999999875
Q ss_pred CCCCCCHHHHHHHHH-----HhcCCCCCChhHHHHHHHHHcCCCccccCcC---------CCCChHHHHHHHHHHHHhCC
Q psy860 94 INEHLTAQEMLECFS-----ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS---------GRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 94 l~~~ltv~e~l~~~~-----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~---------~~LSgGqkQRv~IAraL~~~ 159 (178)
.- .=|.+|.+.++- ..++.. .+....+|..+.|++.+.+-. ..||||+|||+.+||.+.++
T Consensus 556 ms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHr 630 (728)
T KOG0064|consen 556 MS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHR 630 (728)
T ss_pred cC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcC
Confidence 43 334555444321 112332 334556666666655444332 46999999999999999999
Q ss_pred CCeEEeeCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLY 175 (178)
Q Consensus 160 P~~lllDEPt~gLD~~ 175 (178)
|++.+|||-||++-+.
T Consensus 631 PkyalLDEcTsAvsid 646 (728)
T KOG0064|consen 631 PKYALLDECTSAVSID 646 (728)
T ss_pred cchhhhhhhhcccccc
Confidence 9999999999987653
No 400
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.49 E-value=2e-14 Score=133.17 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=62.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCCC----------ChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--C
Q psy860 95 NEHLTAQEMLECFSALRGIPGV----------KSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--D 161 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~ 161 (178)
+..++|.|.+.|+..+ +.+.. +..++++ +++.+||... .++.+.+|||||||||.||+||+.+| +
T Consensus 434 ~~~~~v~~~~~~~~~~-~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~ 511 (943)
T PRK00349 434 VSELSIGEALEFFENL-KLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV 511 (943)
T ss_pred HhcCcHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCc
Confidence 4568888888875433 22211 2223343 6788999866 79999999999999999999999997 9
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
++||||||+||||..+
T Consensus 512 llILDEPtagLd~~~~ 527 (943)
T PRK00349 512 LYVLDEPSIGLHQRDN 527 (943)
T ss_pred EEEecCCccCCCHHHH
Confidence 9999999999999753
No 401
>KOG0066|consensus
Probab=99.48 E-value=4.4e-14 Score=119.95 Aligned_cols=152 Identities=18% Similarity=0.101 Sum_probs=99.4
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCccccccccccccc-cc----H----Hhhc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNI-MH----L----FQYL 82 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~-~~----~----~~~~ 82 (178)
-.+.+-|+.|-.|. -..++||||-||+ ||++++..- ..|....+.+.-+.+ .+ + ..-.
T Consensus 278 ~LFvnA~L~Iv~GR----RYGLVGPNG~GKT-------TLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~ 346 (807)
T KOG0066|consen 278 LLFVNASLTIVYGR----RYGLVGPNGMGKT-------TLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADK 346 (807)
T ss_pred eeeeccceEEEecc----eecccCCCCCchH-------HHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhH
Confidence 45677888888888 4569999999999 999987643 334334443333322 11 0 0000
Q ss_pred cceEEecCCC-----CCCCCCCHHHHHHH-HHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHH
Q psy860 83 SGIGYCPQFN-----GINEHLTAQEMLEC-FSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMA 155 (178)
Q Consensus 83 ~~ig~v~Q~~-----~l~~~ltv~e~l~~-~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAra 155 (178)
++..++-... ..-...|+.|.+.- +..++.+....+..++.++|.-+|.+ +..+++...+|||.|.||++|||
T Consensus 347 kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARA 426 (807)
T KOG0066|consen 347 KRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARA 426 (807)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHH
Confidence 1122211111 01124556554432 33333333334456788999999997 56678888999999999999999
Q ss_pred HhCCCCeEEeeCCCCCCCCCC
Q psy860 156 LIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 156 L~~~P~~lllDEPt~gLD~~~ 176 (178)
|..+|-+|.|||||+.||..+
T Consensus 427 LflEPTLLMLDEPTNHLDLNA 447 (807)
T KOG0066|consen 427 LFLEPTLLMLDEPTNHLDLNA 447 (807)
T ss_pred HhcCceeeeecCCccccccce
Confidence 999999999999999999754
No 402
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.46 E-value=4.3e-14 Score=130.66 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=59.8
Q ss_pred CCCCHHHHHHHHHHhcCCCC-C--------ChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--CeE
Q psy860 96 EHLTAQEMLECFSALRGIPG-V--------KSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--DDG 163 (178)
Q Consensus 96 ~~ltv~e~l~~~~~~~~~~~-~--------~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~~l 163 (178)
-.+|+.|.+.|+..+...+. . +..++. +.+..+||... .++.+.+|||||+|||.||+||+.+| +++
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~ll 511 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLY 511 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEE
Confidence 36788888877655321100 0 111111 24677888765 69999999999999999999999996 899
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
||||||+|||+.++
T Consensus 512 ILDEPtagLD~~~~ 525 (924)
T TIGR00630 512 VLDEPSIGLHQRDN 525 (924)
T ss_pred EEcCCccCCCHHHH
Confidence 99999999999753
No 403
>KOG0063|consensus
Probab=99.44 E-value=7e-14 Score=118.07 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=112.3
Q ss_pred hhhhhccCccccccchhhhccHHHHHH-HhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhc
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLE-CFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYL 82 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~-~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~ 82 (178)
|.|++-. .-+-+..+.|..||-+. .+...+|.||.||| |+++.++|..+|+.|. +++.+
T Consensus 343 y~Yp~m~---k~~g~F~L~i~~GefsdSeiivmlgEngtgkT-------Tfi~mlag~~~pd~~~------e~p~l---- 402 (592)
T KOG0063|consen 343 YSYPKMK---KTVGDFCLCIKVGEFSDSEIIVMLGENGTGKT-------TFIRMLAGRLKPDEGG------EIPVL---- 402 (592)
T ss_pred eccCcce---eeeeeEEEEEeecccCCceeEEEEccCCcchh-------HHHHHHhcCCCCCccC------ccccc----
Confidence 4554443 56777788888887211 02567899999999 9999999999988765 22222
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
.++|=||...--..-||++.+.-- ++. .....+.+.++++-+.+++..|+.+..||||++|||++|.+|-...++
T Consensus 403 -nVSykpqkispK~~~tvR~ll~~k--Ir~--ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdv 477 (592)
T KOG0063|consen 403 -NVSYKPQKISPKREGTVRQLLHTK--IRD--AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADV 477 (592)
T ss_pred -ceeccccccCccccchHHHHHHHH--hHh--hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCce
Confidence 588888876544556787755431 111 112345678888889999999999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
.+.|||.+.||...|
T Consensus 478 YliDEpsAylDSeQR 492 (592)
T KOG0063|consen 478 YLIDEPSAYLDSEQR 492 (592)
T ss_pred EEecCchhhcChHHH
Confidence 999999999997654
No 404
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.43 E-value=5.8e-14 Score=107.54 Aligned_cols=36 Identities=17% Similarity=0.008 Sum_probs=33.5
Q ss_pred CChHHHHHHHHHHHHh----CCCCeEEeeCCCCCCCCCCC
Q psy860 142 YSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 142 LSgGqkQRv~IAraL~----~~P~~lllDEPt~gLD~~~~ 177 (178)
||+|||||++|||+++ .+|+++++|||+++||+.++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~ 134 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNR 134 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHH
Confidence 9999999999999996 69999999999999998753
No 405
>KOG2355|consensus
Probab=99.40 E-value=1.2e-13 Score=107.07 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=103.6
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---H--
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---L-- 78 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~-- 78 (178)
|.|.-. .|++.|+|++++.|.- .-++|.||+||+ ||++.+.|-.---.|.|.+.|.+.-. +
T Consensus 21 f~y~~~---dP~~~Dfnldlp~gsR----cLlVGaNGaGKt-------TlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~ 86 (291)
T KOG2355|consen 21 FKYKVS---DPIFFDFNLDLPAGSR----CLLVGANGAGKT-------TLLKILSGKHMVGGGVVQVLGRSAFHDTSLES 86 (291)
T ss_pred EecccC---CceEEEEeeccCCCce----EEEEecCCCchh-------hhHHHhcCcccccCCeEEEcCcCccccccccc
Confidence 566322 3899999999999984 448999999999 99999888754455777777775422 1
Q ss_pred --------HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHH
Q psy860 79 --------FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 79 --------~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv 150 (178)
.++.+..++-- +..+..++++.+.+.- ..+ .. -++-+++++.+++.- .-+.+.+|-|||+||
T Consensus 87 Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mifg---V~g---~d-p~Rre~LI~iLDIdl--~WRmHkvSDGqrRRV 156 (291)
T KOG2355|consen 87 SGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFG---VGG---DD-PERREKLIDILDIDL--RWRMHKVSDGQRRRV 156 (291)
T ss_pred cCceeEecccccccccccc-cccccccccHHHHHhh---ccC---CC-hhHhhhhhhheeccc--eEEEeeccccchhhh
Confidence 12222222222 1223345666554321 222 22 245566777777752 345788999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
.|++.|+.--++|+|||-|.-||+.+|
T Consensus 157 QicMGLL~PfkVLLLDEVTVDLDVlAR 183 (291)
T KOG2355|consen 157 QICMGLLKPFKVLLLDEVTVDLDVLAR 183 (291)
T ss_pred HHHHhcccceeEEEeeeeEeehHHHHH
Confidence 999999999999999999999998765
No 406
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.40 E-value=2.3e-14 Score=111.53 Aligned_cols=109 Identities=8% Similarity=-0.133 Sum_probs=76.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
..+++|+++.. |+ +.+|.|+||+||| |+++.+.+... +...|..+.. -.+++|..
T Consensus 14 ~~v~n~i~l~~--g~----~~~ltGpNg~GKS-------Tllr~i~~~~~-----l~~~G~~v~a-------~~~~~q~~ 68 (199)
T cd03283 14 KRVANDIDMEK--KN----GILITGSNMSGKS-------TFLRTIGVNVI-----LAQAGAPVCA-------SSFELPPV 68 (199)
T ss_pred CeecceEEEcC--Cc----EEEEECCCCCChH-------HHHHHHHHHHH-----HHHcCCEEec-------CccCcccc
Confidence 35778888877 46 7789999999999 88888865321 1223443321 13667766
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.+++.+|+.|++.+..... ....+++.++++.+++ .+|+++++||||+|+
T Consensus 69 ~l~~~~~~~d~l~~~~s~~----~~e~~~~~~iL~~~~~--------------------------~~p~llllDEp~~gl 118 (199)
T cd03283 69 KIFTSIRVSDDLRDGISYF----YAELRRLKEIVEKAKK--------------------------GEPVLFLLDEIFKGT 118 (199)
T ss_pred eEEEeccchhccccccChH----HHHHHHHHHHHHhccC--------------------------CCCeEEEEecccCCC
Confidence 7899999999986532111 1122456777777762 799999999999999
Q ss_pred CCCC
Q psy860 173 NLYN 176 (178)
Q Consensus 173 D~~~ 176 (178)
|+..
T Consensus 119 D~~~ 122 (199)
T cd03283 119 NSRE 122 (199)
T ss_pred CHHH
Confidence 9875
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.39 E-value=2.9e-14 Score=112.80 Aligned_cols=107 Identities=15% Similarity=0.044 Sum_probs=77.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE-EecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG-YCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig-~v~Q~ 91 (178)
..+.+|+++++..++ +..|.|+|++||| |+++.+.- +.+ ..++| |||.+
T Consensus 17 ~~v~~~~~~~~~~~~----~~~l~G~n~~GKs-------tll~~i~~--------~~~-----------la~~g~~vpa~ 66 (222)
T cd03285 17 AFIPNDVTLTRGKSR----FLIITGPNMGGKS-------TYIRQIGV--------IVL-----------MAQIGCFVPCD 66 (222)
T ss_pred CeEEeeEEEeecCCe----EEEEECCCCCChH-------HHHHHHHH--------HHH-----------HHHhCCCcCcc
Confidence 357999999999888 7789999999999 77776541 100 11234 55554
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH--hCCCCeEEeeCC-
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL--IGDRDDGFQKLP- 168 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL--~~~P~~lllDEP- 168 (178)
....+ .+++++..+++.+.. ...+|.|++|++.+++++ +.+|+++|+|||
T Consensus 67 ~~~~~------------------------~~~~il~~~~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~ 119 (222)
T cd03285 67 SADIP------------------------IVDCILARVGASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELG 119 (222)
T ss_pred cEEEe------------------------ccceeEeeeccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 32111 123344556665432 577999999999999999 899999999999
Q ss_pred --CCCCCCCC
Q psy860 169 --FSSQNLYN 176 (178)
Q Consensus 169 --t~gLD~~~ 176 (178)
|+++|+.+
T Consensus 120 ~gT~~lD~~~ 129 (222)
T cd03285 120 RGTSTYDGFG 129 (222)
T ss_pred CCCChHHHHH
Confidence 99999864
No 408
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.39 E-value=2e-13 Score=115.09 Aligned_cols=135 Identities=13% Similarity=0.046 Sum_probs=99.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--------CCcccccccccccccccHHhhccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--------SPFQAAQNSLLMTNIMHLFQYLSG 84 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--------~~~~~g~i~~~g~~~~~~~~~~~~ 84 (178)
..+++|||++|..|+ ..++.|+||+||+ |+++.+.|. ..|++|.+.+--.. -
T Consensus 396 ryvlr~vNL~ikpGd----vvaVvGqSGaGKt-------tllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---------~ 455 (593)
T COG2401 396 RYVLRNLNLEIKPGD----VVAVVGQSGAGKT-------TLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---------V 455 (593)
T ss_pred eeeeeceeeEecCCC----eEEEEecCCCCcc-------hHHHHHHHHhhcccccccCCCCCceeccccc---------h
Confidence 568999999999999 7889999999999 666666655 45778877332111 1
Q ss_pred eEEecCC--CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc--cccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 85 IGYCPQF--NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE--YRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 85 ig~v~Q~--~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~--~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
-+++|-. +.+ ...|+.|++.- . --+-..+.++|...|+.+ .-.+++++||-|||.|+.||++++..|
T Consensus 456 ~a~iPge~Ep~f-~~~tilehl~s------~--tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerp 526 (593)
T COG2401 456 SALIPGEYEPEF-GEVTILEHLRS------K--TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERP 526 (593)
T ss_pred hhccCccccccc-CchhHHHHHhh------c--cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCC
Confidence 2234433 222 24566666531 1 112345778899999963 446778999999999999999999999
Q ss_pred CeEEeeCCCCCCCCCC
Q psy860 161 DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 ~~lllDEPt~gLD~~~ 176 (178)
.+++.||=.|.||+.+
T Consensus 527 n~~~iDEF~AhLD~~T 542 (593)
T COG2401 527 NVLLIDEFAAHLDELT 542 (593)
T ss_pred CcEEhhhhhhhcCHHH
Confidence 9999999999999865
No 409
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.35 E-value=7.4e-13 Score=128.16 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHH------HHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--CeEEeeC
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIID------YWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--DDGFQKL 167 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~------~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~~lllDE 167 (178)
.|++.|...++..+.... .......+ +.|..+||... .++.+.+|||||+|||.||+||+.+| +++||||
T Consensus 426 ~m~i~~l~~~~~~l~~~~-~~~~~il~ei~~RL~~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDE 504 (1809)
T PRK00635 426 QMSLQELFIFLSQLPSKS-LSIEEVLQGLKSRLSILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDE 504 (1809)
T ss_pred cCCHHHHHHHHHhhhhhh-HHHHHHHHHHHHHHHHHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEEC
Confidence 567777766654442100 01111121 23566788866 68999999999999999999999999 8999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
||+|||+.++
T Consensus 505 PTagLD~~~~ 514 (1809)
T PRK00635 505 PSIGLHPQDT 514 (1809)
T ss_pred CccCCCHHHH
Confidence 9999999754
No 410
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.35 E-value=2.4e-13 Score=102.39 Aligned_cols=36 Identities=19% Similarity=0.019 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCCC
Q psy860 142 YSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 142 LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~~ 177 (178)
||+||+||+.+|++|+. +|+++++|||++|+|+..+
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~ 117 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDG 117 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHH
Confidence 99999999999999987 7899999999999999753
No 411
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.34 E-value=3.3e-13 Score=109.90 Aligned_cols=38 Identities=16% Similarity=-0.091 Sum_probs=33.4
Q ss_pred CCCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCCC
Q psy860 140 GRYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 140 ~~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~~ 177 (178)
.+|||||+||+++|++++. +|+++++||||++||+..+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~ 210 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVA 210 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHH
Confidence 3499999999999997654 9999999999999998753
No 412
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.32 E-value=5.2e-12 Score=113.48 Aligned_cols=71 Identities=21% Similarity=0.166 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCC---CeEEeeCCCCCCC
Q psy860 98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDR---DDGFQKLPFSSQN 173 (178)
Q Consensus 98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P---~~lllDEPt~gLD 173 (178)
|||.|-..||.... .. .+.-+.|..+||. -..-++..+||||+-|||-+|.-|.... -+.||||||+||-
T Consensus 784 MTveEA~~FF~~~p-----~I-~rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH 857 (935)
T COG0178 784 MTVEEALEFFEAIP-----KI-ARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLH 857 (935)
T ss_pred ccHHHHHHHHhcch-----HH-HHHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCC
Confidence 56666555554221 12 2334456678986 4557889999999999999999999888 9999999999995
Q ss_pred C
Q psy860 174 L 174 (178)
Q Consensus 174 ~ 174 (178)
+
T Consensus 858 ~ 858 (935)
T COG0178 858 F 858 (935)
T ss_pred H
Confidence 4
No 413
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.29 E-value=1.9e-12 Score=105.18 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=35.1
Q ss_pred CCCCChHHHHHHHHHHHHh---------CCCCeEEeeCCCCCCCCCCC
Q psy860 139 SGRYSGGNKRKLSTAMALI---------GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 139 ~~~LSgGqkQRv~IAraL~---------~~P~~lllDEPt~gLD~~~~ 177 (178)
...+|+||||++.||++|+ .+|+++++||||++||+..+
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~ 228 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQ 228 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHH
Confidence 4568999999999999986 79999999999999999753
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=5.1e-13 Score=104.41 Aligned_cols=109 Identities=10% Similarity=0.020 Sum_probs=77.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE-EecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG-YCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig-~v~Q~ 91 (178)
..+.+|+++++..|+ +..|.|+||+||| |+++.+.++. +..++| ++
T Consensus 16 ~~v~~~~~~~~~~~~----~~~l~G~n~~GKs-------tll~~i~~~~-------------------~la~~G~~v--- 62 (204)
T cd03282 16 NFIPNDIYLTRGSSR----FHIITGPNMSGKS-------TYLKQIALLA-------------------IMAQIGCFV--- 62 (204)
T ss_pred cEEEeeeEEeeCCCc----EEEEECCCCCCHH-------HHHHHHHHHH-------------------HHHHcCCCc---
Confidence 468999999999999 7779999999999 8888765542 011222 12
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
|..+..+++.+++ +..++..+..++..+++|+|++|. ..+.+++.+|+++++|||++|
T Consensus 63 pa~~~~l~~~d~I---------------------~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~g 120 (204)
T cd03282 63 PAEYATLPIFNRL---------------------LSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRG 120 (204)
T ss_pred chhhcCccChhhe---------------------eEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCC
Confidence 2233444554444 223344445567778999999976 455668899999999999999
Q ss_pred CCCCC
Q psy860 172 QNLYN 176 (178)
Q Consensus 172 LD~~~ 176 (178)
+|+..
T Consensus 121 t~~~~ 125 (204)
T cd03282 121 TSSAD 125 (204)
T ss_pred CCHHH
Confidence 99853
No 415
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.14 E-value=2.9e-12 Score=99.68 Aligned_cols=40 Identities=8% Similarity=-0.080 Sum_probs=31.9
Q ss_pred cCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 136 HRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 136 ~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
....+.+|.+++| +..+.+++.+|+++++||||+|+|+..
T Consensus 86 ~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~ 125 (202)
T cd03243 86 SDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAE 125 (202)
T ss_pred cCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHH
Confidence 3445667877776 555678889999999999999999964
No 416
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.10 E-value=1.8e-11 Score=95.78 Aligned_cols=38 Identities=21% Similarity=-0.020 Sum_probs=32.9
Q ss_pred CCCChH--HHHHHHHHHHHhCCCCeEEeeCCC-----CCCCCCCC
Q psy860 140 GRYSGG--NKRKLSTAMALIGDRDDGFQKLPF-----SSQNLYNT 177 (178)
Q Consensus 140 ~~LSgG--qkQRv~IAraL~~~P~~lllDEPt-----~gLD~~~~ 177 (178)
+..||+ |++++.||++++.+|+++++|||| ++|||..+
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~ 193 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELV 193 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHH
Confidence 444444 889999999999999999999999 99999754
No 417
>KOG0063|consensus
Probab=98.96 E-value=3.1e-10 Score=96.28 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=87.2
Q ss_pred cHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec----CCC---CCCC
Q psy860 24 TAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP----QFN---GINE 96 (178)
Q Consensus 24 ~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~----Q~~---~l~~ 96 (178)
+.|++.+ ++|-||.||+ |-++.+.|-.+|.-|.- .++-+..+ .++|.. |+. .+-.
T Consensus 98 rpg~vlg----lvgtngigks-------tAlkilagk~kpnlg~~-~~pp~w~~------il~~frgselq~yftk~le~ 159 (592)
T KOG0063|consen 98 RPGQVLG----LVGTNGIGKS-------TALKILAGKQKPNLGRY-DNPPDWQE------ILTYFRGSELQNYFTKILED 159 (592)
T ss_pred Ccchhcc----ccccCcccHH-------HHHHHHhCCCCCCCCCC-CCCcchHH------HhhhhhhHHHhhhhhhhccc
Confidence 4788555 9999999999 88999999888876652 11111111 111110 110 0000
Q ss_pred C---CCHHHHHHHHHH-hc----C-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC
Q psy860 97 H---LTAQEMLECFSA-LR----G-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL 167 (178)
Q Consensus 97 ~---ltv~e~l~~~~~-~~----~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE 167 (178)
+ ..-.+.+....+ .. + +.....++...++.+.+.|....++.+.+||||+-||.+||.+-+++.|+.++||
T Consensus 160 ~lk~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 160 NLKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred cccCcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecC
Confidence 0 000112211110 10 0 1112233355667888888888999999999999999999999999999999999
Q ss_pred CCCCCCCCCC
Q psy860 168 PFSSQNLYNT 177 (178)
Q Consensus 168 Pt~gLD~~~~ 177 (178)
|.+.||++.|
T Consensus 240 pSsYLDVKQR 249 (592)
T KOG0063|consen 240 PSSYLDVKQR 249 (592)
T ss_pred CcccchHHHh
Confidence 9999998754
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.94 E-value=7.5e-11 Score=90.66 Aligned_cols=49 Identities=6% Similarity=-0.041 Sum_probs=37.2
Q ss_pred HHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 127 DLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 127 ~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
..++..+..++..+++|+|++|...+.+. +.+|+++++|||++|+|+..
T Consensus 47 ~~~~~~d~~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~ 95 (185)
T smart00534 47 TRIGASDSLAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYD 95 (185)
T ss_pred EEeCCCCchhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHH
Confidence 34555566677889999999984444432 35999999999999999864
No 419
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.90 E-value=9.4e-10 Score=97.38 Aligned_cols=51 Identities=18% Similarity=0.119 Sum_probs=40.6
Q ss_pred HHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh----------CCCCeEEeeCCC-CCCCCCCC
Q psy860 124 YWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI----------GDRDDGFQKLPF-SSQNLYNT 177 (178)
Q Consensus 124 ~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~----------~~P~~lllDEPt-~gLD~~~~ 177 (178)
..++..|.. +..+.+||||||||++||+||+ .+|+++|||||| ++||+.++
T Consensus 454 ~~~~~~g~~---~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~ 515 (562)
T PHA02562 454 ETIKSRGRE---DFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGT 515 (562)
T ss_pred hHHhcCCCC---ccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHH
Confidence 344444442 3467899999999999999988 599999999998 78998753
No 420
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.90 E-value=3.5e-10 Score=103.57 Aligned_cols=104 Identities=12% Similarity=-0.040 Sum_probs=67.6
Q ss_pred hhhhccHH-HHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCcccccccccccccccHHhhccceEEecCCCCCCC
Q psy860 19 INEHLTAQ-EMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE 96 (178)
Q Consensus 19 v~~~~~~g-~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~ 96 (178)
+|+.+..+ + ...|.||||+||| |+++.+.+. ..++.| .+||.....
T Consensus 314 ~di~l~~~~~----~liItGpNg~GKS-------TlLK~i~~~~l~aq~G-------------------~~Vpa~~~~-- 361 (771)
T TIGR01069 314 FTLNLKFEKR----VLAITGPNTGGKT-------VTLKTLGLLALMFQSG-------------------IPIPANEHS-- 361 (771)
T ss_pred ceeEeCCCce----EEEEECCCCCCch-------HHHHHHHHHHHHHHhC-------------------CCccCCccc--
Confidence 67777765 5 6779999999999 898888765 222222 145544321
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
.+...+.+. .. ++-.+......++||+||+|++.|++++ .+|+++|+|||++|+||..
T Consensus 362 ~~~~~d~i~-----~~----------------i~~~~si~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~e 419 (771)
T TIGR01069 362 EIPYFEEIF-----AD----------------IGDEQSIEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDE 419 (771)
T ss_pred cccchhhee-----ee----------------cChHhHHhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHH
Confidence 011111110 00 0111122344788999999999999887 7999999999999999864
No 421
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.89 E-value=2.3e-10 Score=80.51 Aligned_cols=74 Identities=12% Similarity=0.113 Sum_probs=60.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH--hhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF--QYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~--~~~~~ig~v~Q 90 (178)
.++|++++|++..|| +.+|+|+||+||| ||+..+. .|.+.++|.++.... +.++.++++||
T Consensus 2 ~~aL~~vsl~i~~ge----~v~I~GpSGsGKS-------TLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q 64 (107)
T cd00820 2 TTSLHGVLVDVYGKV----GVLITGDSGIGKT-------ELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPE 64 (107)
T ss_pred ceEEEeeEEEEcCCE----EEEEEcCCCCCHH-------HHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEech
Confidence 378999999999999 8889999999999 8888764 678899998886653 34556778888
Q ss_pred CCCCCCCCCHHHHHHH
Q psy860 91 FNGINEHLTAQEMLEC 106 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~ 106 (178)
+ ....|++||+.+
T Consensus 65 ~---lf~~ti~~Ni~~ 77 (107)
T cd00820 65 L---GLEIRLRLNIFL 77 (107)
T ss_pred h---cchhhHHhhcee
Confidence 7 455789999977
No 422
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.88 E-value=1.5e-09 Score=88.34 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=48.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc---HHhhccceEEecCCCCCCCCCCHHHH
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH---LFQYLSGIGYCPQFNGINEHLTAQEM 103 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~---~~~~~~~ig~v~Q~~~l~~~ltv~e~ 103 (178)
.+|+|++|+||| |+++.+.+..+|++|++.++|+++.. ..+++..++++||+. +...++|.++
T Consensus 114 ~~i~g~~g~GKt-------tl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~ 179 (270)
T TIGR02858 114 TLIISPPQCGKT-------TLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDG 179 (270)
T ss_pred EEEEcCCCCCHH-------HHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-cccccccccc
Confidence 378999999999 99999999999999999999998753 345555677788853 3445555443
No 423
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.81 E-value=2.5e-09 Score=101.18 Aligned_cols=47 Identities=26% Similarity=0.104 Sum_probs=41.6
Q ss_pred CCCccccCcCCCCChHHHHHHHHHHHHhC----------CCCeEEeeCCCCCCCCCC
Q psy860 130 GLTEYRHRVSGRYSGGNKRKLSTAMALIG----------DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 130 ~L~~~~~~~~~~LSgGqkQRv~IAraL~~----------~P~~lllDEPt~gLD~~~ 176 (178)
++....++++.+|||||++||+||+||+. +|++||+||||+|||+.+
T Consensus 939 ~~~~~~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~ 995 (1042)
T TIGR00618 939 DAYTGSVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDS 995 (1042)
T ss_pred eCCCCCcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHH
Confidence 34456678899999999999999999985 799999999999999875
No 424
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.79 E-value=1.5e-09 Score=85.57 Aligned_cols=104 Identities=14% Similarity=-0.040 Sum_probs=62.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC-CcccccccccccccccHHhhccceEEecCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS-PFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~-~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.+.+|++++... + +.+|.|+||+||| |+++.+.+.. -++.|. .....+..++++.|
T Consensus 19 ~v~n~~~l~~~~-~----~~~l~Gpn~sGKs-------tllr~i~~~~~l~~~g~---------~vp~~~~~i~~~~~-- 75 (216)
T cd03284 19 FVPNDTELDPER-Q----ILLITGPNMAGKS-------TYLRQVALIALLAQIGS---------FVPASKAEIGVVDR-- 75 (216)
T ss_pred eEeeeEEecCCc-e----EEEEECCCCCChH-------HHHHHHHHHHHHhccCC---------eeccccceecceee--
Confidence 378999999887 5 7889999999999 8888765431 111111 01111124555543
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH--hCCCCeEEeeCC--
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL--IGDRDDGFQKLP-- 168 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL--~~~P~~lllDEP-- 168 (178)
+++.+++.+++... .|-=...++.+++++ +.+|+++++|||
T Consensus 76 -i~~~~~~~~~ls~g----------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~ 120 (216)
T cd03284 76 -IFTRIGASDDLAGG----------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGR 120 (216)
T ss_pred -EeccCCchhhhccC----------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 45556665554321 111122233344443 579999999999
Q ss_pred -CCCCCCC
Q psy860 169 -FSSQNLY 175 (178)
Q Consensus 169 -t~gLD~~ 175 (178)
|+++|+.
T Consensus 121 gt~~lD~~ 128 (216)
T cd03284 121 GTSTYDGL 128 (216)
T ss_pred CCChHHHH
Confidence 8888864
No 425
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.77 E-value=3.5e-09 Score=100.11 Aligned_cols=43 Identities=26% Similarity=0.182 Sum_probs=39.4
Q ss_pred ccCcCCCCChHHHHHHHHHHHHhC--------CCCeEEeeCCCCCCCCCCC
Q psy860 135 RHRVSGRYSGGNKRKLSTAMALIG--------DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 135 ~~~~~~~LSgGqkQRv~IAraL~~--------~P~~lllDEPt~gLD~~~~ 177 (178)
.++++.+|||||+++|+||+||+. +|++||+||||++||+.+.
T Consensus 943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~ 993 (1047)
T PRK10246 943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETL 993 (1047)
T ss_pred CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHH
Confidence 458899999999999999999995 8999999999999998753
No 426
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=5.7e-09 Score=100.71 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=37.1
Q ss_pred CcCCCCChHHHH------HHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKR------KLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 137 ~~~~~LSgGqkQ------Rv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
...+.||||||| |++||+|++.+|++|+|||||++||+.+
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~ 1240 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDREN 1240 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHH
Confidence 345789999999 9999999999999999999999999875
No 427
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=98.75 E-value=4.4e-09 Score=93.62 Aligned_cols=37 Identities=11% Similarity=-0.070 Sum_probs=33.9
Q ss_pred CCCChHHHHHHHHHHHHhCC----CCeEEeeCCCCCCCCCC
Q psy860 140 GRYSGGNKRKLSTAMALIGD----RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 140 ~~LSgGqkQRv~IAraL~~~----P~~lllDEPt~gLD~~~ 176 (178)
..|||||+||++||++++.. |+++||||||+|||+.+
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~ 479 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGET 479 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHH
Confidence 46899999999999999985 69999999999999865
No 428
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.74 E-value=7.3e-09 Score=81.46 Aligned_cols=31 Identities=13% Similarity=-0.092 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860 145 GNKRKLSTAMALIGDRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 145 GqkQRv~IAraL~~~P~~lllDEPt~gLD~~ 175 (178)
-+.||+.+|++++.+|+++++|||++|+|+.
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~ 124 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTE 124 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHH
Confidence 3678999999999999999999999999985
No 429
>PRK01156 chromosome segregation protein; Provisional
Probab=98.74 E-value=1.6e-08 Score=94.26 Aligned_cols=40 Identities=20% Similarity=0.100 Sum_probs=36.1
Q ss_pred CcCCCCChHHHHHHHH------HHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKRKLST------AMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 137 ~~~~~LSgGqkQRv~I------AraL~~~P~~lllDEPt~gLD~~~ 176 (178)
..+..||||||+|++| |++++.+|++++|||||++||+..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~ 842 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDR 842 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHH
Confidence 4688999999999975 599999999999999999999864
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=98.68 E-value=1.1e-08 Score=90.76 Aligned_cols=36 Identities=14% Similarity=0.028 Sum_probs=33.2
Q ss_pred CCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCC
Q psy860 141 RYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 141 ~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~ 176 (178)
.+||||+|||+||++++. +|+++|||||++|||+.+
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~ 469 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPT 469 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHH
Confidence 479999999999999997 689999999999999864
No 431
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.66 E-value=2.1e-08 Score=87.32 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=91.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
.++++.++.++.|+ ..+++|+||+||| |++..+.+......|.. .|+++.++.
T Consensus 244 ~~~~~~~~~~~~g~----Vi~LvGpnGvGKT-------TTiaKLA~~~~~~~G~~---------------kV~LI~~Dt- 296 (484)
T PRK06995 244 PVLDSEDALLDRGG----VFALMGPTGVGKT-------TTTAKLAARCVMRHGAS---------------KVALLTTDS- 296 (484)
T ss_pred hhccCccccccCCc----EEEEECCCCccHH-------HHHHHHHHHHHHhcCCC---------------eEEEEeCCc-
Confidence 45667777788887 6779999999999 77777776544443331 588999886
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHH-HHHHHHHHhCCC-----CeEEeeC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKR-KLSTAMALIGDR-----DDGFQKL 167 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQ-Rv~IAraL~~~P-----~~lllDE 167 (178)
+..++.|++.+++...+++........+...+..++.+.....+.+.+..++- .+.-..+++.++ .+|+||.
T Consensus 297 --~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdA 374 (484)
T PRK06995 297 --YRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNA 374 (484)
T ss_pred --cchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 55789999999888877665444445556666777776666677775444432 233444455554 7899999
Q ss_pred CCCCCC
Q psy860 168 PFSSQN 173 (178)
Q Consensus 168 Pt~gLD 173 (178)
++.+-|
T Consensus 375 t~~~~~ 380 (484)
T PRK06995 375 TSHGDT 380 (484)
T ss_pred CCcHHH
Confidence 987754
No 432
>PRK03918 chromosome segregation protein; Provisional
Probab=98.65 E-value=1.1e-08 Score=95.07 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=38.3
Q ss_pred CCccccCcCCCCChHHHH------HHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 131 LTEYRHRVSGRYSGGNKR------KLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 131 L~~~~~~~~~~LSgGqkQ------Rv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+....++++..|||||+| |+++|++++.+|+++|+||||++||+..
T Consensus 778 l~~g~~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~ 829 (880)
T PRK03918 778 VYQGKERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEER 829 (880)
T ss_pred eCCCCcCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHH
Confidence 344446788999999999 5566678889999999999999999865
No 433
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.62 E-value=1.8e-08 Score=95.40 Aligned_cols=44 Identities=14% Similarity=-0.008 Sum_probs=38.8
Q ss_pred cccCcCCCCChHHHHHHHHHHHHh----CCCCeEEeeCCCCCCCCCCC
Q psy860 134 YRHRVSGRYSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 134 ~~~~~~~~LSgGqkQRv~IAraL~----~~P~~lllDEPt~gLD~~~~ 177 (178)
..+..+..||||||||++||++++ ..|+++||||||++||+.++
T Consensus 1082 ~~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~ 1129 (1179)
T TIGR02168 1082 KKNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANV 1129 (1179)
T ss_pred CccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHH
Confidence 456788999999999999999985 67799999999999998653
No 434
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=98.48 E-value=9.3e-08 Score=82.30 Aligned_cols=110 Identities=9% Similarity=-0.017 Sum_probs=79.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
.+++++ +.+..|+ ..+|+|++|+||+ ||++.+.+..+++.+.+. ++.|..
T Consensus 145 raID~l-l~I~~Gq----ri~I~G~sG~GKT-------tLl~~Ia~~~~~~~gvI~-----------------~iGerg- 194 (432)
T PRK06793 145 KSIDSM-LTIGIGQ----KIGIFAGSGVGKS-------TLLGMIAKNAKADINVIS-----------------LVGERG- 194 (432)
T ss_pred EEEecc-ceecCCc----EEEEECCCCCChH-------HHHHHHhccCCCCeEEEE-----------------eCCCCc-
Confidence 678874 9999999 6779999999999 999999998887766542 222321
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHh-------CCCCeEEe
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALI-------GDRDDGFQ 165 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~-------~~P~~lll 165 (178)
.+|.|.+....... ++.. ..=....+.|.|+|+|+..+.+.+ .++-++++
T Consensus 195 ----~ev~e~~~~~l~~~------------------gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlil 252 (432)
T PRK06793 195 ----REVKDFIRKELGEE------------------GMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMM 252 (432)
T ss_pred ----ccHHHHHHHHhhhc------------------ccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 34555443211111 1110 111446778999999999999888 89999999
Q ss_pred eCCCCCCCCC
Q psy860 166 KLPFSSQNLY 175 (178)
Q Consensus 166 DEPt~gLD~~ 175 (178)
|+||.+.|+.
T Consensus 253 DslTr~a~A~ 262 (432)
T PRK06793 253 DSVTRFADAR 262 (432)
T ss_pred cchHHHHHHH
Confidence 9999998864
No 435
>PRK00064 recF recombination protein F; Reviewed
Probab=98.48 E-value=5e-08 Score=82.48 Aligned_cols=40 Identities=18% Similarity=0.010 Sum_probs=35.8
Q ss_pred cCCCCChHHHHHHHHHHHHh---------CCCCeEEeeCCCCCCCCCCC
Q psy860 138 VSGRYSGGNKRKLSTAMALI---------GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 138 ~~~~LSgGqkQRv~IAraL~---------~~P~~lllDEPt~gLD~~~~ 177 (178)
....+|.||||++.+|++|+ .+|+++++|||+++||+..+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~ 318 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRR 318 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHH
Confidence 34679999999999999996 79999999999999998754
No 436
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.44 E-value=8.4e-08 Score=92.85 Aligned_cols=44 Identities=16% Similarity=-0.025 Sum_probs=36.6
Q ss_pred cccCcCCCCChHHHHHHH----HHHH--------HhCCCCeEEeeCCCCCCCCCCC
Q psy860 134 YRHRVSGRYSGGNKRKLS----TAMA--------LIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 134 ~~~~~~~~LSgGqkQRv~----IAra--------L~~~P~~lllDEPt~gLD~~~~ 177 (178)
..++.++.||||||||++ +|++ +..+|++++|||||+|||+.++
T Consensus 1240 ~~~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~ 1295 (1353)
T TIGR02680 1240 PLTHRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNAR 1295 (1353)
T ss_pred chhccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHH
Confidence 345567899999999996 5755 5589999999999999998754
No 437
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.43 E-value=9.6e-08 Score=90.67 Aligned_cols=43 Identities=12% Similarity=-0.165 Sum_probs=37.8
Q ss_pred ccCcCCCCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCCC
Q psy860 135 RHRVSGRYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 135 ~~~~~~~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~~ 177 (178)
..+.+..||||||++++||++++. .|+++|||||+++||+.++
T Consensus 1068 ~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~ 1114 (1164)
T TIGR02169 1068 PVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNV 1114 (1164)
T ss_pred CCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHH
Confidence 345678999999999999999984 7899999999999998753
No 438
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.42 E-value=8.6e-08 Score=81.17 Aligned_cols=38 Identities=18% Similarity=-0.007 Sum_probs=35.2
Q ss_pred CCCChHHHHHHHHHHHHhC---------CCCeEEeeCCCCCCCCCCC
Q psy860 140 GRYSGGNKRKLSTAMALIG---------DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 140 ~~LSgGqkQRv~IAraL~~---------~P~~lllDEPt~gLD~~~~ 177 (178)
..+|.||||++.||.+|+. +|++++||||+++||+..+
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r 320 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRR 320 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHH
Confidence 3689999999999999999 9999999999999998654
No 439
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.39 E-value=2.2e-07 Score=63.37 Aligned_cols=41 Identities=27% Similarity=0.229 Sum_probs=29.9
Q ss_pred cCcCCCCChHHHH-HHH------HHHHHhC------CCCeEEeeCCCCCCCCCC
Q psy860 136 HRVSGRYSGGNKR-KLS------TAMALIG------DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 136 ~~~~~~LSgGqkQ-Rv~------IAraL~~------~P~~lllDEPt~gLD~~~ 176 (178)
.+..+.+|||||| .+. ++.++.. .|++++|||||++||+.+
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~ 80 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEEN 80 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHH
Confidence 5678999999995 333 3334444 379999999999999864
No 440
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.36 E-value=1.6e-07 Score=86.40 Aligned_cols=43 Identities=5% Similarity=-0.118 Sum_probs=38.1
Q ss_pred ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 133 EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 133 ~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+...+..++||+||+|++.|++++ .+|+++|+|||++|+||..
T Consensus 382 ~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~e 424 (782)
T PRK00409 382 QSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDE 424 (782)
T ss_pred cchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHH
Confidence 344567889999999999999999 8999999999999999864
No 441
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.34 E-value=2.6e-07 Score=71.33 Aligned_cols=113 Identities=10% Similarity=-0.065 Sum_probs=69.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcC
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRG 112 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 112 (178)
.+|.|++||||| |+.+.+.+... .+ .+.+++++. ++..++..+........+.
T Consensus 2 igi~G~~GsGKS-------Tl~~~l~~~l~--~~-----------------~~~v~~~D~-~~~~~~~~~~~~~~~~~~~ 54 (198)
T cd02023 2 IGIAGGSGSGKT-------TVAEEIIEQLG--NP-----------------KVVIISQDS-YYKDLSHEELEERKNNNYD 54 (198)
T ss_pred EEEECCCCCCHH-------HHHHHHHHHhC--CC-----------------CeEEEEecc-cccccccccHHHhccCCCC
Confidence 468999999999 88888877651 11 234444442 2222222222211111112
Q ss_pred CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860 113 IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~ 175 (178)
.+.....+...+.++.+......+.+..++|.|++++..+ .+..|+++|+|+|+.+.++.
T Consensus 55 ~~~~~~~~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~ 114 (198)
T cd02023 55 HPDAFDFDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKE 114 (198)
T ss_pred CCCcccHHHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccchh
Confidence 2222223344566666666666677888999999876655 57889999999999998753
No 442
>PRK14079 recF recombination protein F; Provisional
Probab=98.29 E-value=3.8e-07 Score=76.80 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=34.7
Q ss_pred CCCChHHHHHHHHHHHHh---------CCCCeEEeeCCCCCCCCCCC
Q psy860 140 GRYSGGNKRKLSTAMALI---------GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 140 ~~LSgGqkQRv~IAraL~---------~~P~~lllDEPt~gLD~~~~ 177 (178)
..+|+|||+++.+|+.|+ .+|++++||||+++||+..+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~ 308 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRR 308 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHH
Confidence 358999999999999999 99999999999999998643
No 443
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.26 E-value=7.4e-07 Score=71.76 Aligned_cols=34 Identities=18% Similarity=0.052 Sum_probs=30.9
Q ss_pred CCChHH--------HHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 141 RYSGGN--------KRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 141 ~LSgGq--------kQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
.+|||+ +||+++||++..++++.+| ||+.+|..+
T Consensus 129 ~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~ 170 (249)
T cd01128 129 ILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGS 170 (249)
T ss_pred CCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCC
Confidence 369999 9999999999899999999 999999643
No 444
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.16 E-value=2.9e-07 Score=79.79 Aligned_cols=67 Identities=13% Similarity=0.032 Sum_probs=52.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc-cccccccccccHHh-hccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA-QNSLLMTNIMHLFQ-YLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g-~i~~~g~~~~~~~~-~~~~ig~v~Q 90 (178)
..+|++||+++++|| +.+|+|+|||||| ||++ .++..|++| .+.++|+++..+.+ ....+-+|||
T Consensus 19 ~~vL~~Vsl~i~~GE----iv~L~G~SGsGKS-------TLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR~VFQ 85 (504)
T TIGR03238 19 ERILVKFNKELPSSS----LLFLCGSSGDGKS-------EILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLDEIFD 85 (504)
T ss_pred HHHHhCCceeecCCC----EEEEECCCCCCHH-------HHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHHHHHH
Confidence 468999999999999 8889999999999 9999 677777777 69999998865321 1111127888
Q ss_pred CC
Q psy860 91 FN 92 (178)
Q Consensus 91 ~~ 92 (178)
+.
T Consensus 86 ~f 87 (504)
T TIGR03238 86 GF 87 (504)
T ss_pred hh
Confidence 63
No 445
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.14 E-value=1.2e-06 Score=75.49 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=65.8
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc---cccccccccHH--------hhc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN---SLLMTNIMHLF--------QYL 82 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i---~~~g~~~~~~~--------~~~ 82 (178)
.+++++ +.|.+|+ ..+|+|+||+||| |+++++.+..+++.+.+ ...+.++..+. ..|
T Consensus 144 ~aID~l-l~I~~GQ----~igI~G~sGaGKS-------TLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~r 211 (434)
T PRK07196 144 NAINGL-LTIGKGQ----RVGLMAGSGVGKS-------VLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAK 211 (434)
T ss_pred eeccce-EeEecce----EEEEECCCCCCcc-------HHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccce
Confidence 799999 9999999 7789999999999 89999999887775333 23333333221 124
Q ss_pred cceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860 83 SGIGYCPQFNGINEHLTAQEMLECFSALR 111 (178)
Q Consensus 83 ~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 111 (178)
..+++++|+...+..+++.++..+.+.++
T Consensus 212 svvv~~~~d~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 212 SVVVAAPADESPLMRIKATELCHAIATYY 240 (434)
T ss_pred EEEEEecCCCChhhhHHHHHHHHHHHHHh
Confidence 46999999999999999999887766543
No 446
>PRK02224 chromosome segregation protein; Provisional
Probab=98.07 E-value=1.7e-06 Score=80.60 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=34.2
Q ss_pred CcCCCCChHHHH------HHHHHHHHhCC-----C-CeEEeeCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKR------KLSTAMALIGD-----R-DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 137 ~~~~~LSgGqkQ------Rv~IAraL~~~-----P-~~lllDEPt~gLD~~~ 176 (178)
..+..||||||+ |+++|++++.+ | ..+|+||||++||+..
T Consensus 777 ~~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~ 828 (880)
T PRK02224 777 LEPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGH 828 (880)
T ss_pred cChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHH
Confidence 347799999999 89999999864 3 6799999999999865
No 447
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.01 E-value=1.3e-05 Score=60.72 Aligned_cols=47 Identities=4% Similarity=-0.231 Sum_probs=38.6
Q ss_pred HHcCCCccccCcCCCCChHHHH------HHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860 127 DLLGLTEYRHRVSGRYSGGNKR------KLSTAMALIGDRDDGFQKLPFSSQN 173 (178)
Q Consensus 127 ~~~~L~~~~~~~~~~LSgGqkQ------Rv~IAraL~~~P~~lllDEPt~gLD 173 (178)
...+.....+..+..+|+|++| +...+.+...+|+++++|||++.+|
T Consensus 57 ~~~g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 57 EDEGLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HhcCCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 3455556678888999999998 6666666788999999999999998
No 448
>PRK06315 type III secretion system ATPase; Provisional
Probab=97.99 E-value=6.8e-06 Score=71.08 Aligned_cols=117 Identities=13% Similarity=0.077 Sum_probs=76.6
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc-ccccccccc---cccccHH--hh---ccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQNSLLM---TNIMHLF--QY---LSG 84 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i~~~g---~~~~~~~--~~---~~~ 84 (178)
.+++++ |++..|+ ..+|+|.||+||| |+++.+.+..+. +.+.+.+.| +++.++. .+ ...
T Consensus 153 ~aID~~-l~i~~Gq----~i~I~G~sG~GKS-------tLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~ 220 (442)
T PRK06315 153 RCIDGM-LTVARGQ----RIGIFAGAGVGKS-------SLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMK 220 (442)
T ss_pred EEEecc-ccccCCc----EEEEECCCCCCcc-------hHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCc
Confidence 688988 9999999 6779999999999 888988887743 445555544 4443321 11 123
Q ss_pred eEEe-----cCCCC--CCCCCCHHHHHHHHHHhcCCC---CCChhHHHHHHHHHcCCC-----ccccCcCCCCC
Q psy860 85 IGYC-----PQFNG--INEHLTAQEMLECFSALRGIP---GVKSGPIIDYWIDLLGLT-----EYRHRVSGRYS 143 (178)
Q Consensus 85 ig~v-----~Q~~~--l~~~ltv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~L~-----~~~~~~~~~LS 143 (178)
.+++ +|++. +.+.+ +...+..+.+..+.. ..+...++.++++.+++. .....+++.||
T Consensus 221 ~svvvvats~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS 293 (442)
T PRK06315 221 RSVIVVSTSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFS 293 (442)
T ss_pred eEEEEEeCCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhh
Confidence 4555 88763 44444 444444333333322 245567888899999993 46678888888
No 449
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.93 E-value=1.3e-06 Score=69.15 Aligned_cols=43 Identities=9% Similarity=-0.105 Sum_probs=35.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQ 67 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~ 67 (178)
.+.+|+++.+..|+ +..|.|+||+||| |+++.+.+. ..++.|.
T Consensus 19 ~v~n~i~~~~~~g~----~~~itG~N~~GKS-------tll~~i~~~~~la~~G~ 62 (222)
T cd03287 19 FVPNDIHLSAEGGY----CQIITGPNMGGKS-------SYIRQVALITIMAQIGS 62 (222)
T ss_pred EEEEeEEEEecCCc----EEEEECCCCCCHH-------HHHHHHHHHHHHHhCCC
Confidence 57899999999999 7779999999999 888877763 4455555
No 450
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=97.89 E-value=4.3e-05 Score=69.82 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHH----------HHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCC--CeE
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIIDY----------WIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDR--DDG 163 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~----------~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P--~~l 163 (178)
.+++.+...|+..+. .. .+....++. .|-.+||.- ..+|...+|||||.||+-+|.-+-.+= =+.
T Consensus 428 ~msi~~~~~f~~~l~-l~-~~~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlY 505 (935)
T COG0178 428 EMSIADALEFFENLK-LS-EKEKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLY 505 (935)
T ss_pred hccHHHHHHHHHhCC-Cc-hhhHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEE
Confidence 466777776665443 11 111122222 233467763 458899999999999999999887654 478
Q ss_pred EeeCCCCCCCCC
Q psy860 164 FQKLPFSSQNLY 175 (178)
Q Consensus 164 llDEPt~gLD~~ 175 (178)
+||||+.||=+.
T Consensus 506 VLDEPSIGLHqr 517 (935)
T COG0178 506 VLDEPSIGLHQR 517 (935)
T ss_pred EecCCccCCChh
Confidence 999999999765
No 451
>PRK13695 putative NTPase; Provisional
Probab=97.72 E-value=2.7e-06 Score=64.48 Aligned_cols=39 Identities=3% Similarity=-0.096 Sum_probs=32.7
Q ss_pred cCcCCCCChHHHHHHHHHHHHhCCCCeEEeeC--CCCCCCC
Q psy860 136 HRVSGRYSGGNKRKLSTAMALIGDRDDGFQKL--PFSSQNL 174 (178)
Q Consensus 136 ~~~~~~LSgGqkQRv~IAraL~~~P~~lllDE--Pt~gLD~ 174 (178)
.+....+|++++-+..+++..+.+|+++++|| |+.++|+
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~ 113 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSP 113 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhH
Confidence 34566799999999999999999999999999 5556553
No 452
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=97.68 E-value=2.7e-05 Score=60.91 Aligned_cols=51 Identities=16% Similarity=0.075 Sum_probs=35.1
Q ss_pred HHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH----hCCCCeEEeeCCCCCCCCCCC
Q psy860 121 IIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL----IGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 121 ~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL----~~~P~~lllDEPt~gLD~~~~ 177 (178)
.+.+.++.+.+... .||||||..++||.-| ...+.+++||||.++||+.++
T Consensus 122 ~~~~~l~~~~i~~~------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~ 176 (220)
T PF02463_consen 122 DLEELLPEVGISPE------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNR 176 (220)
T ss_dssp HHHHHHHCTTTTTT------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHH
T ss_pred cccccccccccccc------ccccccccccccccccccccccccccccccccccccccccc
Confidence 34455555555432 8999999999998655 356789999999999998653
No 453
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.64 E-value=4.2e-05 Score=60.81 Aligned_cols=32 Identities=13% Similarity=-0.054 Sum_probs=22.8
Q ss_pred CCChHHHHHHHHHHHHh----CCCCeEEeeCCCCCC
Q psy860 141 RYSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQ 172 (178)
Q Consensus 141 ~LSgGqkQRv~IAraL~----~~P~~lllDEPt~gL 172 (178)
.+|++..++-.+++.+- .+|+++++||||+++
T Consensus 95 ~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 95 LLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred cccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 36666655555544433 369999999999999
No 454
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.60 E-value=0.00014 Score=57.48 Aligned_cols=35 Identities=17% Similarity=0.046 Sum_probs=29.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
..+-+||++.++.++ +..|.|+|++||+ |+++.+.
T Consensus 17 ~~v~ndi~l~~~~~~----~~~itG~n~~gKs-------~~l~~i~ 51 (218)
T cd03286 17 SFVPNDVDLGATSPR----ILVLTGPNMGGKS-------TLLRTVC 51 (218)
T ss_pred CeEEeeeEEeecCCc----EEEEECCCCCchH-------HHHHHHH
Confidence 367899999999998 7789999999999 6665443
No 455
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=97.59 E-value=2.9e-05 Score=67.27 Aligned_cols=72 Identities=14% Similarity=0.155 Sum_probs=56.3
Q ss_pred hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc---cccccH----
Q psy860 6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM---TNIMHL---- 78 (178)
Q Consensus 6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g---~~~~~~---- 78 (178)
|.+|+ .+++.++ .|..|+ ..+|+|++|+||| ||++.+.++.+|+.|.+.+.| +++..+
T Consensus 149 l~TGi---~aID~L~-~I~~Gq----ri~I~G~SGsGKT-------TLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 149 LRTGV---RVIDIFT-PLCAGQ----RIGIFAGSGVGKS-------TLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred cCCCc---EEeeeec-eecCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 44554 7888886 899999 7789999999999 999999999999999887754 554432
Q ss_pred -Hh-hccceEEecCCC
Q psy860 79 -FQ-YLSGIGYCPQFN 92 (178)
Q Consensus 79 -~~-~~~~ig~v~Q~~ 92 (178)
.. .++.|++++|..
T Consensus 214 l~~~r~rtI~vV~qsd 229 (450)
T PRK06002 214 LADNLKKAVAVVATSD 229 (450)
T ss_pred HHHhhCCeEEEEEcCC
Confidence 12 235799999974
No 456
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.57 E-value=5.4e-05 Score=58.05 Aligned_cols=83 Identities=14% Similarity=0.074 Sum_probs=59.4
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC--
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN-- 92 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~-- 92 (178)
+.+=+.+.++.|+ ...|.|+||+||| |+++.++++.+++.+.+.+.+...... ..+..+++++|..
T Consensus 14 ~~~~l~~~v~~g~----~i~I~G~tGSGKT-------Tll~aL~~~i~~~~~~i~ied~~E~~~-~~~~~~~~~~~~~~~ 81 (186)
T cd01130 14 QAAYLWLAVEARK----NILISGGTGSGKT-------TLLNALLAFIPPDERIITIEDTAELQL-PHPNWVRLVTRPGNV 81 (186)
T ss_pred HHHHHHHHHhCCC----EEEEECCCCCCHH-------HHHHHHHhhcCCCCCEEEECCccccCC-CCCCEEEEEEecCCC
Confidence 4556677888888 6779999999999 999999999999999887755332222 1233466665543
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy860 93 GINEHLTAQEMLECFSA 109 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~ 109 (178)
...+..+..+.+....+
T Consensus 82 ~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 82 EGSGEVTMADLLRSALR 98 (186)
T ss_pred CCCCccCHHHHHHHHhc
Confidence 34567888888876554
No 457
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.00012 Score=68.81 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=33.7
Q ss_pred cCcCCCCChHHHHHHHHHHH------HhCC--CCeEEeeCCCCCCCCCC
Q psy860 136 HRVSGRYSGGNKRKLSTAMA------LIGD--RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 136 ~~~~~~LSgGqkQRv~IAra------L~~~--P~~lllDEPt~gLD~~~ 176 (178)
-+.+..||||++-.++||.+ +..+ -+.+|+||||..||+.+
T Consensus 810 ~r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~ 858 (908)
T COG0419 810 VRPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEER 858 (908)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHH
Confidence 36789999999996666654 4566 79999999999999865
No 458
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=97.43 E-value=7.1e-05 Score=57.79 Aligned_cols=40 Identities=20% Similarity=0.079 Sum_probs=32.3
Q ss_pred cCCCCChHHHHHHHHHHHHhCCC---CeEEeeCCCCCCCCCCC
Q psy860 138 VSGRYSGGNKRKLSTAMALIGDR---DDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 138 ~~~~LSgGqkQRv~IAraL~~~P---~~lllDEPt~gLD~~~~ 177 (178)
....+|.|+||.+.++.++...+ .++++|||-++|.|..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q 275 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQ 275 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHH
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHH
Confidence 45678999999999998888887 88999999999999653
No 459
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.39 E-value=0.00022 Score=59.04 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=32.8
Q ss_pred hhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc
Q psy860 19 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL 70 (178)
Q Consensus 19 v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~ 70 (178)
+++.++.|+ ...|.|++|+||| |+++.+++..+++.+.+.+
T Consensus 137 l~~~v~~~~----~ili~G~tGsGKT-------Tll~al~~~~~~~~~iv~i 177 (308)
T TIGR02788 137 LRLAIASRK----NIIISGGTGSGKT-------TFLKSLVDEIPKDERIITI 177 (308)
T ss_pred HHHHhhCCC----EEEEECCCCCCHH-------HHHHHHHccCCccccEEEE
Confidence 556777777 5669999999999 9999999998877665543
No 460
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.29 E-value=0.00064 Score=47.60 Aligned_cols=37 Identities=19% Similarity=-0.057 Sum_probs=30.1
Q ss_pred CCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860 139 SGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 139 ~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~ 175 (178)
....++.+..+..+++|-...|+++++||+..-.+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~ 94 (148)
T smart00382 58 KASGSGELRLRLALALARKLKPDVLILDEITSLLDAE 94 (148)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 4457788888888888888889999999998876643
No 461
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.23 E-value=0.00027 Score=51.54 Aligned_cols=33 Identities=6% Similarity=-0.183 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 140 GRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 140 ~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
...+....++...+++...+|+++++|||++-+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~ 98 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLV 98 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHH
Confidence 344556667888999999999999999999543
No 462
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.14 E-value=0.00018 Score=62.38 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=54.1
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH----------hhcc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF----------QYLS 83 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~----------~~~~ 83 (178)
.+++++ +.+..|+ ..+|+|++|+||| |+++.+.+..+++.|.+.+.|+.-.+.. .+++
T Consensus 147 ~vid~l-~~i~~Gq----~i~I~G~sG~GKS-------tLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r 214 (438)
T PRK07721 147 RAIDSL-LTVGKGQ----RVGIFAGSGVGKS-------TLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKR 214 (438)
T ss_pred hhhhee-eeecCCc----EEEEECCCCCCHH-------HHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcC
Confidence 689999 9999999 7789999999999 9999999999999999888665443222 2456
Q ss_pred ceEEecCC
Q psy860 84 GIGYCPQF 91 (178)
Q Consensus 84 ~ig~v~Q~ 91 (178)
.+.++.+.
T Consensus 215 ~v~vv~~~ 222 (438)
T PRK07721 215 SIVVVATS 222 (438)
T ss_pred eEEEEECC
Confidence 78888764
No 463
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.06 E-value=0.00059 Score=61.69 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 121 IIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 121 ~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
.+.+.++.+|+.+..+..+.++||| +|++|| +..||+..
T Consensus 243 ~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~ 281 (615)
T TIGR02903 243 GARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLL 281 (615)
T ss_pred HHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHH
Confidence 4556688889988888899999999 999999 78999754
No 464
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.05 E-value=0.00058 Score=54.06 Aligned_cols=35 Identities=11% Similarity=-0.096 Sum_probs=29.8
Q ss_pred CCCChHHHHHHHHHHHHhC--CCCeEEeeCCCCCCCC
Q psy860 140 GRYSGGNKRKLSTAMALIG--DRDDGFQKLPFSSQNL 174 (178)
Q Consensus 140 ~~LSgGqkQRv~IAraL~~--~P~~lllDEPt~gLD~ 174 (178)
...|.++++.+..+..++. +|+++++||||+.+|.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~ 135 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY 135 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc
Confidence 4567889999999999987 9999999999976654
No 465
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.95 E-value=0.00019 Score=54.75 Aligned_cols=65 Identities=8% Similarity=-0.141 Sum_probs=44.7
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhc-cceEEecCCCCCCCCCCHHHHHHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYL-SGIGYCPQFNGINEHLTAQEMLECF 107 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~ 107 (178)
...+.|+||+||| |+++.+.++..+ +++++.++......+ ...|+.+|+....+..++..+..+.
T Consensus 5 ~i~l~G~sGsGKS-------Tl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 5 SYILMGVSGSGKS-------LIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred EEEEECCCCCCHH-------HHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 5679999999999 999999888765 367887765543322 2356666665555666776666543
No 466
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.93 E-value=0.0017 Score=50.28 Aligned_cols=19 Identities=21% Similarity=-0.106 Sum_probs=17.4
Q ss_pred HHHHHHhCCCCeEEeeCCC
Q psy860 151 STAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt 169 (178)
+++++|.++|+++++|||.
T Consensus 66 ~i~~aLr~~pd~ii~gEir 84 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR 84 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC
Confidence 4889999999999999996
No 467
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=96.88 E-value=0.00067 Score=58.65 Aligned_cols=74 Identities=12% Similarity=0.014 Sum_probs=55.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhh--------ccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQY--------LSG 84 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~--------~~~ 84 (178)
..+++++ +.+..|+ ..+|+|+||+||| ||++.+.+...++.+.+...|+.-.+..++ ...
T Consensus 133 ~~~id~l-~~i~~Gq----~~~I~G~sG~GKS-------tLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~~~~~~~~ 200 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQ----RIGIFAGAGVGKS-------TLLGMIARGASADVNVIALIGERGREVREFIEHHLGEEGRK 200 (422)
T ss_pred ceeehhh-ccccCCC----EEEEECCCCCChH-------HHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHHhcccccc
Confidence 3789999 9999999 7789999999999 999999999999988887755543333211 123
Q ss_pred eEEecCCCCCCCCC
Q psy860 85 IGYCPQFNGINEHL 98 (178)
Q Consensus 85 ig~v~Q~~~l~~~l 98 (178)
.++++++....+.+
T Consensus 201 ~tvvv~~~s~~p~~ 214 (422)
T TIGR02546 201 RSVLVVSTSDRPSL 214 (422)
T ss_pred ceEEEeccccCCHH
Confidence 56677766555544
No 468
>PRK08149 ATP synthase SpaL; Validated
Probab=96.84 E-value=0.00042 Score=59.90 Aligned_cols=67 Identities=7% Similarity=-0.020 Sum_probs=54.1
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---ccccccccccccHH-h-----hccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---AQNSLLMTNIMHLF-Q-----YLSG 84 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---g~i~~~g~~~~~~~-~-----~~~~ 84 (178)
.+++++ +.+.+|+ ..+|+|++|+||| ||++.+.+...++. |.|...++++..+. + ..++
T Consensus 140 ~aid~l-l~i~~Gq----~i~I~G~sG~GKT-------TLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~ 207 (428)
T PRK08149 140 RAIDGL-LTCGVGQ----RMGIFASAGCGKT-------SLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREK 207 (428)
T ss_pred EEEeee-eeEecCC----EEEEECCCCCChh-------HHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccc
Confidence 789999 9999999 8889999999999 99999999888776 77778888776542 1 2256
Q ss_pred eEEecCCC
Q psy860 85 IGYCPQFN 92 (178)
Q Consensus 85 ig~v~Q~~ 92 (178)
+++|+...
T Consensus 208 ~~vV~~~s 215 (428)
T PRK08149 208 CVLVYATS 215 (428)
T ss_pred eEEEEECC
Confidence 78887653
No 469
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=96.65 E-value=0.0005 Score=57.48 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=43.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN 74 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~ 74 (178)
.+++++ +.+..|+ ..+|+|+||+||+ ||++.+.+...++.+.+...|+.
T Consensus 58 ~aiD~l-~~i~~Gq----ri~I~G~sG~GKT-------tLl~~Ia~~~~~~~~vi~~iGer 106 (326)
T cd01136 58 RAIDGL-LTVGKGQ----RLGIFAGSGVGKS-------TLLGMIARGTTADVNVIALIGER 106 (326)
T ss_pred EEEeee-eEEcCCc----EEEEECCCCCChH-------HHHHHHhCCCCCCEEEEEEEecC
Confidence 689999 9999999 7789999999999 99999999999988877665543
No 470
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=96.49 E-value=0.00084 Score=58.14 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=44.9
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH 77 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~ 77 (178)
.+++++ +.+..|+ ..+|+|+||+||+ ||++.+.+...++.+.+.+.|+.-..
T Consensus 144 ~aID~l-l~i~~Gq----rigI~G~sG~GKS-------TLL~~I~~~~~~d~~vi~~iGeRgrE 195 (433)
T PRK07594 144 RAIDSV-ATCGEGQ----RVGIFSAPGVGKS-------TLLAMLCNAPDADSNVLVLIGERGRE 195 (433)
T ss_pred eeeeee-eecCCCC----EEEEECCCCCCcc-------HHHHHhcCCCCCCEEEEEEECCCchH
Confidence 799999 9999999 7779999999999 99999999999998877666664433
No 471
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.48 E-value=0.0012 Score=54.40 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=45.7
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCC--ccccccccccccc-ccHHhhccceEEecCCCCCCCCCCHHHHHHHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--FQAAQNSLLMTNI-MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFS 108 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~~~g~i~~~g~~~-~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~ 108 (178)
+.+|.|+|||||| |+.+.+.++.. |++|.+.+.+.+. ....+.++..++. |..+..+.+++.+.+.+..
T Consensus 64 IIGIaG~~GSGKS-------Tlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 64 IISIAGSVAVGKS-------TTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHH
Confidence 6789999999999 88877777655 5666665444332 1112223335543 6667777888888777654
Q ss_pred Hh
Q psy860 109 AL 110 (178)
Q Consensus 109 ~~ 110 (178)
.+
T Consensus 136 ~L 137 (290)
T TIGR00554 136 DL 137 (290)
T ss_pred HH
Confidence 44
No 472
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=96.44 E-value=0.00094 Score=58.02 Aligned_cols=67 Identities=12% Similarity=0.029 Sum_probs=51.4
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---ccccccccccccHHh-----hccce
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---AQNSLLMTNIMHLFQ-----YLSGI 85 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---g~i~~~g~~~~~~~~-----~~~~i 85 (178)
.+++.+ +.+..|+ ..+|+|+||+||+ |+++.+.+..+++. |.|...++++....+ -.+..
T Consensus 164 raID~l-l~I~~Gq----ri~I~G~sG~GKT-------TLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~~~~~~ 231 (455)
T PRK07960 164 RAINAL-LTVGRGQ----RMGLFAGSGVGKS-------VLLGMMARYTQADVIVVGLIGERGREVKDFIENILGAEGRAR 231 (455)
T ss_pred eeeeec-ccccCCc----EEEEECCCCCCcc-------HHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCcCCCce
Confidence 455555 8999999 7789999999999 99999999988885 777777887765321 12357
Q ss_pred EEecCCC
Q psy860 86 GYCPQFN 92 (178)
Q Consensus 86 g~v~Q~~ 92 (178)
++|+|+.
T Consensus 232 tvVv~~~ 238 (455)
T PRK07960 232 SVVIAAP 238 (455)
T ss_pred EEEEEEC
Confidence 7788764
No 473
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.44 E-value=0.00084 Score=57.87 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=47.9
Q ss_pred hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc
Q psy860 6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH 77 (178)
Q Consensus 6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~ 77 (178)
|.+|+ .+++++ +.+..|+ ..+|+|++|+||+ ||++.+.+..+++.|.+.+.|+....
T Consensus 121 ~~tGi---~~iD~l-~~i~~Gq----ri~I~G~sG~GKT-------tLl~~i~~~~~~~~gvi~~~Ger~~e 177 (413)
T TIGR03497 121 LETGI---KAIDGL-LTIGKGQ----RVGIFAGSGVGKS-------TLLGMIARNAKADINVIALIGERGRE 177 (413)
T ss_pred ccccc---eeeeeE-EEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCeEEEEEEccchHH
Confidence 34454 789999 9999999 7889999999999 99999999988998888777765543
No 474
>PRK01889 GTPase RsgA; Reviewed
Probab=96.37 E-value=0.0016 Score=55.16 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=49.4
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
++.+...+..|+ ..+++|.+|+||| ||+..+.+...++.|.+.+++...... ..++.+.+++|...+
T Consensus 185 l~~L~~~L~~g~----~~~lvG~sgvGKS-------tLin~L~g~~~~~~G~i~~~~~~g~~t-t~~~~l~~l~~~~~l 251 (356)
T PRK01889 185 LDVLAAWLSGGK----TVALLGSSGVGKS-------TLVNALLGEEVQKTGAVREDDSKGRHT-TTHRELHPLPSGGLL 251 (356)
T ss_pred HHHHHHHhhcCC----EEEEECCCCccHH-------HHHHHHHHhcccceeeEEECCCCCcch-hhhccEEEecCCCee
Confidence 455566777777 6779999999999 999999999999999998876543222 223467788776433
No 475
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=96.33 E-value=0.0011 Score=57.63 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=43.1
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI 75 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~ 75 (178)
.+++++ +.+..|+ ..+|+|+||+||| ||++.+.+...++.+.+...|..-
T Consensus 152 ~~iD~l-~~i~~Gq----~~~I~G~sG~GKS-------tLl~~I~~~~~~~~~vi~~iG~r~ 201 (440)
T TIGR01026 152 RSIDGL-LTVGKGQ----RIGIFAGSGVGKS-------TLLGMIARNTEADVNVIALIGERG 201 (440)
T ss_pred eeeeec-cccCCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCEEEEEEEeecc
Confidence 789999 9999999 7789999999999 999999999888887766655543
No 476
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.33 E-value=0.0039 Score=48.37 Aligned_cols=42 Identities=12% Similarity=-0.062 Sum_probs=32.7
Q ss_pred cccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 134 YRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 134 ~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+..+.....|.|+-=--.+.+.+- +--+.|||||-++|-|.-
T Consensus 122 ~~~~sLh~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~R 163 (233)
T COG3910 122 YGGRSLHHMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSR 163 (233)
T ss_pred cCCcchhhhccchHHHHHHHHHhc-cCceEEecCccccCCHHH
Confidence 344556788999987777777765 567999999999998853
No 477
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.31 E-value=0.0014 Score=52.17 Aligned_cols=17 Identities=29% Similarity=0.147 Sum_probs=13.5
Q ss_pred HHhCCCCeEEeeCCCCCC
Q psy860 155 ALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 155 aL~~~P~~lllDEPt~gL 172 (178)
+...+|+++++| |++.+
T Consensus 107 ~~~~~~~lvviD-pl~~~ 123 (239)
T cd01125 107 LLIRRIDLVVID-PLVSF 123 (239)
T ss_pred HHhcCCCEEEEC-ChHHh
Confidence 446899999999 87653
No 478
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.0023 Score=55.30 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=21.1
Q ss_pred ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
+..|+ ..+++|+||+||| |++..+.+.
T Consensus 188 ~~~g~----vi~lvGpnG~GKT-------TtlakLA~~ 214 (420)
T PRK14721 188 IEQGG----VYALIGPTGVGKT-------TTTAKLAAR 214 (420)
T ss_pred cCCCc----EEEEECCCCCCHH-------HHHHHHHHH
Confidence 35566 7789999999999 887777653
No 479
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.26 E-value=0.00066 Score=57.50 Aligned_cols=112 Identities=12% Similarity=0.013 Sum_probs=58.3
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCC--cccc-ccccccccccc-HHhhccceEEecCCCCCCCCCCHHHHHHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--FQAA-QNSLLMTNIMH-LFQYLSGIGYCPQFNGINEHLTAQEMLECF 107 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~~~g-~i~~~g~~~~~-~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~ 107 (178)
...+.|++|+||| |+++.+++... +..+ .+.....++.- ....+...++++|...--...+..+.+...
T Consensus 136 lilI~GpTGSGKT-------TtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~a 208 (358)
T TIGR02524 136 IVFITGATGSGKS-------TLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNA 208 (358)
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHH
Confidence 5779999999999 99998888753 2233 44333333321 222333457777753211112333333222
Q ss_pred HHhc----CCCCCChhHHHHHHHHH-------------cCCCccccCcCCCCChHHHHHH
Q psy860 108 SALR----GIPGVKSGPIIDYWIDL-------------LGLTEYRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 108 ~~~~----~~~~~~~~~~~~~~l~~-------------~~L~~~~~~~~~~LSgGqkQRv 150 (178)
.+.. .+....+.+.+..+++. .+..+...+....+|+|+|--+
T Consensus 209 LR~~Pd~i~vGEiRd~et~~~al~aa~tGh~v~tTlHa~~~~~~i~Rl~~~~~~~~~~~~ 268 (358)
T TIGR02524 209 LRRKPHAILVGEARDAETISAALEAALTGHPVYTTLHSSGVAETIRRLVGSFPAEERIGR 268 (358)
T ss_pred hccCCCEEeeeeeCCHHHHHHHHHHHHcCCcEEEeeccCCHHHHHHHHHHhCCccchhhH
Confidence 2111 01111233445556655 2333455677788999988644
No 480
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.26 E-value=0.0053 Score=44.60 Aligned_cols=53 Identities=15% Similarity=0.022 Sum_probs=34.3
Q ss_pred HHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHH-----hCCCCeEEeeCCCCCCCCCC
Q psy860 120 PIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMAL-----IGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 120 ~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL-----~~~P~~lllDEPt~gLD~~~ 176 (178)
..+.+++..++.. -....++..+|++++++....... ...|+++ |+|++|+.+
T Consensus 100 ~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~ 158 (170)
T cd01876 100 LEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQG 158 (170)
T ss_pred HHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCC
Confidence 3455667766654 234455777899988877655542 3445555 999999865
No 481
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=96.22 E-value=0.0036 Score=56.96 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=28.5
Q ss_pred cCCCCChHHHHHHHHHHH--Hh----CCCCeEEeeCCCCCCCCCCC
Q psy860 138 VSGRYSGGNKRKLSTAMA--LI----GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 138 ~~~~LSgGqkQRv~IAra--L~----~~P~~lllDEPt~gLD~~~~ 177 (178)
.+..|||||+|-+++|.. |+ ....+ ++|||++.||+..+
T Consensus 548 ~~~~lS~Ge~~~~~la~~~al~~~~~~~~p~-iiD~p~~~lD~~~r 592 (650)
T TIGR03185 548 DKERLSAGERQILAIALLWGLAKVSGRRLPV-IIDTPLGRLDSSHR 592 (650)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCE-EEcCCccccChHHH
Confidence 467899999998766653 32 23445 56999999998654
No 482
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.20 E-value=0.0033 Score=49.72 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=45.5
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc----cccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN----SLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECF 107 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i----~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~ 107 (178)
+.+|.|+||+||| |+.+.+.+..+++.|.+ .+++-.. ....+...+++++. ..+..+++.+...+.
T Consensus 35 iigi~G~~GsGKT-------Tl~~~L~~~l~~~~g~~~v~i~~D~~~~--~~~~~~~~g~~~~~-~~~~~~d~~~~~~~l 104 (229)
T PRK09270 35 IVGIAGPPGAGKS-------TLAEFLEALLQQDGELPAIQVPMDGFHL--DNAVLDAHGLRPRK-GAPETFDVAGLAALL 104 (229)
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHhhhccCCceEEEecccccC--CHHHHHhccccccc-CCCCCCCHHHHHHHH
Confidence 6789999999999 99999999998888873 3333222 12223346777653 334566777666554
Q ss_pred HHh
Q psy860 108 SAL 110 (178)
Q Consensus 108 ~~~ 110 (178)
..+
T Consensus 105 ~~l 107 (229)
T PRK09270 105 RRL 107 (229)
T ss_pred HHH
Confidence 433
No 483
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.17 E-value=0.0017 Score=51.21 Aligned_cols=24 Identities=8% Similarity=-0.051 Sum_probs=19.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
.+|.|+|||||| |+.+.+.+.+.+
T Consensus 2 igI~G~sGSGKT-------Tla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKS-------TTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHH-------HHHHHHHHHHhh
Confidence 468899999999 888877776543
No 484
>PRK09099 type III secretion system ATPase; Provisional
Probab=96.16 E-value=0.0014 Score=56.88 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=45.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM 76 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~ 76 (178)
.+++++ +.+.+|+ ..+|+|+||+||| |+++.+.+...++.+.+.+.|+.-.
T Consensus 152 ~~ID~l-~~i~~Gq----~~~I~G~sG~GKT-------tLl~~ia~~~~~d~~vi~~iGer~~ 202 (441)
T PRK09099 152 RIVDGL-MTLGEGQ----RMGIFAPAGVGKS-------TLMGMFARGTQCDVNVIALIGERGR 202 (441)
T ss_pred eeccce-eeecCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCeEEEEEEccChH
Confidence 789999 9999999 7789999999999 9999999999899888887775443
No 485
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.11 E-value=0.0022 Score=53.44 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=49.6
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HH--hhccceEEecCCCCCCCCCCHHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LF--QYLSGIGYCPQFNGINEHLTAQEM 103 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~--~~~~~ig~v~Q~~~l~~~ltv~e~ 103 (178)
..+++|+||+||| |++..+.+...+..+.+.+.+.+... .. ..+.++.+++|.....+..++.++
T Consensus 116 vi~lvGpnGsGKT-------Tt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~ 188 (318)
T PRK10416 116 VILVVGVNGVGKT-------TTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDA 188 (318)
T ss_pred EEEEECCCCCcHH-------HHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHH
Confidence 6779999999999 88888888877777788776665422 21 234579999987655565566777
Q ss_pred HHHH
Q psy860 104 LECF 107 (178)
Q Consensus 104 l~~~ 107 (178)
+...
T Consensus 189 l~~~ 192 (318)
T PRK10416 189 IQAA 192 (318)
T ss_pred HHHH
Confidence 6543
No 486
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.10 E-value=0.006 Score=51.97 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=48.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.+++++.++.+..|+ ..+++||+|+||| |++..+........|. +.++++..+.
T Consensus 124 l~~~~~~~~~~~~g~----ii~lvGptGvGKT-------TtiakLA~~~~~~~G~---------------~~V~lit~D~ 177 (374)
T PRK14722 124 LPVLDSEDALMERGG----VFALMGPTGVGKT-------TTTAKLAARCVMRFGA---------------SKVALLTTDS 177 (374)
T ss_pred chhhcCCCccccCCc----EEEEECCCCCCHH-------HHHHHHHHHHHHhcCC---------------CeEEEEeccc
Confidence 356778888899998 6779999999999 7777665432111111 2577777654
Q ss_pred CCCCCCCHHHHHHHHHHhcCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIP 114 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~ 114 (178)
. .....|.+..++...+.+
T Consensus 178 ~---R~ga~EqL~~~a~~~gv~ 196 (374)
T PRK14722 178 Y---RIGGHEQLRIFGKILGVP 196 (374)
T ss_pred c---cccHHHHHHHHHHHcCCc
Confidence 2 336677887776665544
No 487
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=96.01 E-value=0.0018 Score=55.86 Aligned_cols=53 Identities=13% Similarity=-0.004 Sum_probs=44.6
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL 78 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~ 78 (178)
.+++ .+|.+..|+ ..+|+|+||+||+ ||++.+++..+++.|.+.+.|+.....
T Consensus 129 ~aiD-~~~~i~~Gq----~i~I~G~sG~GKT-------tLl~~I~~~~~~~~gvi~~iGer~~ev 181 (418)
T TIGR03498 129 RVID-TFLPLCRGQ----RLGIFAGSGVGKS-------TLLSMLARNTDADVVVIALVGERGREV 181 (418)
T ss_pred EEEe-eeccccCCc----EEEEECCCCCChH-------HHHHHHhCCCCCCEEEEEEEeeechHH
Confidence 5665 699999999 7779999999999 999999999999999887777754443
No 488
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=95.96 E-value=0.0049 Score=50.56 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=49.6
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHH-hhc-cceEEecCCCCC---C-CCCCHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLF-QYL-SGIGYCPQFNGI---N-EHLTAQE 102 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~-~~~-~~ig~v~Q~~~l---~-~~ltv~e 102 (178)
..+++|+||+||| ||++.+.+...++.|.+.. .|...+... .++ ...+++.+.|++ . ..++..+
T Consensus 163 ~~~~~G~sg~GKS-------Tlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~ 235 (287)
T cd01854 163 TSVLVGQSGVGKS-------TLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEE 235 (287)
T ss_pred eEEEECCCCCCHH-------HHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHH
Confidence 5789999999999 9999999988888888754 222222111 122 236789999876 3 4678888
Q ss_pred HHHHHHH
Q psy860 103 MLECFSA 109 (178)
Q Consensus 103 ~l~~~~~ 109 (178)
...+|..
T Consensus 236 ~~~~f~~ 242 (287)
T cd01854 236 LAHYFPE 242 (287)
T ss_pred HHHHhHH
Confidence 7776554
No 489
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=95.94 E-value=0.0016 Score=56.07 Aligned_cols=50 Identities=18% Similarity=0.196 Sum_probs=42.6
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI 75 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~ 75 (178)
.+++.+ +.+..|+ ..+|+|+||+||+ ||+..+.+...++.+.+...|+.-
T Consensus 126 ~~id~l-~~i~~Gq----~~~I~G~sG~GKT-------tLl~~I~~~~~~~~~vi~~iGer~ 175 (411)
T TIGR03496 126 RAINGL-LTVGRGQ----RMGIFAGSGVGKS-------TLLGMMARYTEADVVVVGLIGERG 175 (411)
T ss_pred Eeecce-EEEecCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCEEEEEEEecCh
Confidence 788888 9999999 7789999999999 999999999888877765555543
No 490
>PRK00098 GTPase RsgA; Reviewed
Probab=95.82 E-value=0.009 Score=49.27 Aligned_cols=70 Identities=21% Similarity=0.245 Sum_probs=48.2
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHHhh--ccceEEecCCCCCC----CCCCHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLFQY--LSGIGYCPQFNGIN----EHLTAQE 102 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~~~--~~~ig~v~Q~~~l~----~~ltv~e 102 (178)
..+++|+||+||| ||++.+.+...+..|.+.. .|+..+...++ ....+++.+.|++. ..++..+
T Consensus 166 ~~~~~G~sgvGKS-------tlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~ 238 (298)
T PRK00098 166 VTVLAGQSGVGKS-------TLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEE 238 (298)
T ss_pred eEEEECCCCCCHH-------HHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHH
Confidence 4679999999999 9999999888888888754 33333221121 12467888888876 4577776
Q ss_pred HHHHHH
Q psy860 103 MLECFS 108 (178)
Q Consensus 103 ~l~~~~ 108 (178)
...++.
T Consensus 239 ~~~~f~ 244 (298)
T PRK00098 239 LEHYFP 244 (298)
T ss_pred HHHHHH
Confidence 655544
No 491
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.78 E-value=0.011 Score=54.66 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=30.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP 62 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~ 62 (178)
++++++++.+..|+ +.+++||||+||| |.+..+.+...
T Consensus 173 ~il~~~~~~~~~g~----Vi~lVGpnGvGKT-------TTiaKLA~~~~ 210 (767)
T PRK14723 173 PVLRDEDALLAQGG----VLALVGPTGVGKT-------TTTAKLAARCV 210 (767)
T ss_pred hhccCCCcccCCCe----EEEEECCCCCcHH-------HHHHHHHhhHH
Confidence 46778888888777 7779999999999 77777776543
No 492
>PRK09862 putative ATP-dependent protease; Provisional
Probab=95.72 E-value=0.0021 Score=56.79 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=47.4
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI 75 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~ 75 (178)
.+.+|...+++++++.+..|+ ...++|++|+||+ ++++.+.++.+|..|+..++...+
T Consensus 191 ~~v~Gq~~~~~al~laa~~G~----~llliG~~GsGKT-------tLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGGH----NLLLIGPPGTGKT-------MLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred EEEECcHHHHhhhheeccCCc----EEEEECCCCCcHH-------HHHHHHhccCCCCCCcEEEecchh
Confidence 344455668889999999998 5669999999999 999999999999988876665544
No 493
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.60 E-value=3.1e-05 Score=68.00 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=64.1
Q ss_pred ccccch-hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh--ccCCcccccccccccc-cccHHhhccceEEec
Q psy860 14 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI--RFSPFQAAQNSLLMTN-IMHLFQYLSGIGYCP 89 (178)
Q Consensus 14 ~~~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~--~~~~~~~g~i~~~g~~-~~~~~~~~~~ig~v~ 89 (178)
+-||.+ +=-++.|. ...|.|++|+||| |+...++ |...+....+++..++ ..++.+..+.+|+-+
T Consensus 8 ~gLD~il~GGlp~g~----~~Li~G~pGsGKT-------~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~ 76 (484)
T TIGR02655 8 EGFDDISHGGLPIGR----STLVSGTSGTGKT-------LFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDL 76 (484)
T ss_pred hhHHHhcCCCCCCCe----EEEEEcCCCCCHH-------HHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCH
Confidence 556665 33677888 6779999999999 5555442 3333222223333322 222333333445433
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHH--HHHhCCCCe
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTA--MALIGDRDD 162 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IA--raL~~~P~~ 162 (178)
++..-...+.+ ....+ ......+++.+++.+..++...++|+|++|||.|+ .++...|+.
T Consensus 77 ~~~~~~g~l~~---------~~~~~----~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~ 138 (484)
T TIGR02655 77 QKLVDEGKLFI---------LDASP----DPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYDA 138 (484)
T ss_pred HHHhhcCceEE---------EecCc----hhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCc
Confidence 32100000000 00000 00111234456666677777888899999999998 566565543
No 494
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=95.51 E-value=0.0035 Score=54.54 Aligned_cols=52 Identities=19% Similarity=0.149 Sum_probs=41.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc---cccccccccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA---AQNSLLMTNIMH 77 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~---g~i~~~g~~~~~ 77 (178)
.+++++ |.+..|+ ..+|+|+||+||| ||++.+.+...++. |.+...+.++..
T Consensus 157 ~aID~l-~~I~~Gq----rigI~G~sG~GKS-------TLl~~I~g~~~~dv~V~g~Ig~rg~ev~~ 211 (451)
T PRK05688 157 RSINGL-LTVGRGQ----RLGLFAGTGVGKS-------VLLGMMTRFTEADIIVVGLIGERGREVKE 211 (451)
T ss_pred eeecce-EEecCCc----EEEEECCCCCCHH-------HHHHHHhCCCCCCEEEEEEeCcCcHhHHH
Confidence 789999 9999999 7789999999999 88999988877763 334444444443
No 495
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.36 E-value=0.0061 Score=54.79 Aligned_cols=63 Identities=13% Similarity=-0.061 Sum_probs=47.5
Q ss_pred HhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHH
Q psy860 31 CFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLEC 106 (178)
Q Consensus 31 ~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~ 106 (178)
.+.+|.|+|||||| |+.+.+.+.. |..+.+.+|+.... .+.+.+.+|++..++..++.+++..
T Consensus 66 iIIGIaGpSGSGKT-------TLAk~LaglL-p~vgvIsmDdy~~~-----~~~i~~nfD~P~a~D~d~L~enL~~ 128 (656)
T PLN02318 66 ILVGVAGPSGAGKT-------VFTEKVLNFM-PSIAVISMDNYNDS-----SRIIDGNFDDPRLTDYDTLLDNIHD 128 (656)
T ss_pred EEEEEECCCCCcHH-------HHHHHHHhhC-CCcEEEEEcceecc-----hhhhCccCCChhhcchhHHHHHHHH
Confidence 36889999999999 8888888876 46788888776321 1246678888887777788887754
No 496
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=95.35 E-value=0.0052 Score=46.14 Aligned_cols=61 Identities=10% Similarity=-0.102 Sum_probs=40.3
Q ss_pred hCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhc-cceEEecCCCCCCCCCCHHHHHHHH
Q psy860 36 RGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYL-SGIGYCPQFNGINEHLTAQEMLECF 107 (178)
Q Consensus 36 ~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~ 107 (178)
+|++||||| |+.+.+.+.. |.+.+++.........+ ...|+.+|+....+.+++.++..+.
T Consensus 1 ~G~sGsGKS-------Tla~~la~~l----~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 62 (163)
T PRK11545 1 MGVSGSGKS-------AVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFA 62 (163)
T ss_pred CCCCCCcHH-------HHHHHHHHHh----CCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHH
Confidence 599999999 8877777655 44567775443222222 3467788876666677777777664
No 497
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.0089 Score=58.54 Aligned_cols=53 Identities=9% Similarity=-0.020 Sum_probs=38.3
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhh----hccCCcc-cccccccccccccHHhhccceEEecCC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSA----IRFSPFQ-AAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~----~~~~~~~-~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
+.+|+|+||+||| |++.++ .|..+|. .|.+++++..+......+..|.++|++
T Consensus 30 ~~~I~G~NGaGKT-------Til~ai~~al~G~~~~~~~g~~~i~~~~~~~~~~~~a~V~l~F~~ 87 (1311)
T TIGR00606 30 LTILVGPNGAGKT-------TIIECLKYICTGDFPPGTKGNTFVHDPKVAQETDVRAQIRLQFRD 87 (1311)
T ss_pred eEEEECCCCCCHH-------HHHHHHHHHhcCCCCCCCCCceEecCCCcCccHhhhheeEEEEEc
Confidence 6789999999999 777766 5777775 677777766555444445557777754
No 498
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=95.29 E-value=0.0044 Score=53.74 Aligned_cols=52 Identities=12% Similarity=0.056 Sum_probs=43.8
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH 77 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~ 77 (178)
.+++++ +.+..|+ ..+|+|+||+||| |+++.+.+...++.+.+...|+...+
T Consensus 146 ~aid~l-~~i~~Gq----~~~i~G~sG~GKS-------tLl~~i~~~~~~~v~vi~~iGergre 197 (434)
T PRK08472 146 KSIDGL-LTCGKGQ----KLGIFAGSGVGKS-------TLMGMIVKGCLAPIKVVALIGERGRE 197 (434)
T ss_pred HHhhhc-ceecCCC----EEEEECCCCCCHH-------HHHHHHhhccCCCEEEEEeeCccchh
Confidence 689999 9999999 7779999999999 88888888877777887777766544
No 499
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.23 E-value=0.00032 Score=55.22 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=21.5
Q ss_pred ccccch-hhhccHHHHHHHhhhhhCCCCCCcc
Q psy860 14 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSG 44 (178)
Q Consensus 14 ~~~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~ 44 (178)
+-||.+ .--+++|+ +..|.|++|+|||
T Consensus 7 ~~LD~~l~GGi~~G~----~~~i~G~~G~GKT 34 (229)
T TIGR03881 7 EGLDKLLEGGIPRGF----FVAVTGEPGTGKT 34 (229)
T ss_pred hhHHHhhcCCCcCCe----EEEEECCCCCChH
Confidence 456664 34688898 7779999999999
No 500
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.16 E-value=0.21 Score=37.67 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.8
Q ss_pred HHHHHHHHcCCC-ccccCcCCCCChHHHHHHH--HHHHHhC-CCCeEEeeCCCCCCCCCC
Q psy860 121 IIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLS--TAMALIG-DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 121 ~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~--IAraL~~-~P~~lllDEPt~gLD~~~ 176 (178)
.+.++++..++. -..-.++..+|+|++|++. +++.+-. ++++ .|+|++|+.+
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~g 181 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQG 181 (196)
T ss_pred HHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCC
Confidence 345566666665 4445677889999999987 6666644 2333 3999999875
Done!