Query psy860
Match_columns 178
No_of_seqs 256 out of 2185
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:56:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 2E-45 6.9E-50 307.5 7.1 163 4-177 32-199 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 3E-45 1E-49 306.0 4.8 157 10-177 14-174 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 7.4E-45 2.5E-49 305.6 5.9 156 11-177 14-169 (381)
4 3tif_A Uncharacterized ABC tra 100.0 2E-44 6.9E-49 285.8 5.3 163 4-177 9-181 (235)
5 3gfo_A Cobalt import ATP-bindi 100.0 3.2E-44 1.1E-48 290.7 6.0 153 14-177 22-179 (275)
6 1z47_A CYSA, putative ABC-tran 100.0 5.1E-44 1.8E-48 298.4 6.6 156 11-177 26-181 (355)
7 2it1_A 362AA long hypothetical 100.0 9.4E-44 3.2E-48 297.6 6.1 156 11-177 14-169 (362)
8 2pcj_A ABC transporter, lipopr 100.0 1.9E-43 6.5E-48 278.4 6.5 154 13-177 17-176 (224)
9 2yyz_A Sugar ABC transporter, 100.0 7E-44 2.4E-48 298.1 4.2 156 11-177 14-169 (359)
10 1g29_1 MALK, maltose transport 100.0 1.7E-43 5.9E-48 297.1 6.5 156 11-177 14-175 (372)
11 2olj_A Amino acid ABC transpor 100.0 2.5E-43 8.6E-48 283.9 7.2 156 11-177 35-195 (263)
12 1oxx_K GLCV, glucose, ABC tran 100.0 9.1E-44 3.1E-48 297.0 4.4 156 11-177 14-176 (353)
13 1b0u_A Histidine permease; ABC 100.0 2.5E-43 8.6E-48 283.7 6.7 156 11-177 17-189 (262)
14 1vpl_A ABC transporter, ATP-bi 100.0 6.8E-43 2.3E-47 280.4 7.6 156 11-177 26-182 (256)
15 1v43_A Sugar-binding transport 100.0 1.5E-43 5.1E-48 297.4 2.9 156 11-177 22-177 (372)
16 1sgw_A Putative ABC transporte 100.0 5.8E-42 2E-46 268.4 11.3 147 14-177 23-169 (214)
17 3d31_A Sulfate/molybdate ABC t 100.0 6.5E-43 2.2E-47 291.2 6.0 152 11-177 12-163 (348)
18 1g6h_A High-affinity branched- 100.0 6.5E-43 2.2E-47 280.4 5.2 156 11-177 18-189 (257)
19 4g1u_C Hemin import ATP-bindin 100.0 3.4E-42 1.2E-46 277.7 6.5 154 11-177 22-183 (266)
20 1ji0_A ABC transporter; ATP bi 100.0 6.9E-42 2.4E-46 272.0 5.6 153 13-177 19-175 (240)
21 2yz2_A Putative ABC transporte 100.0 1.4E-41 4.8E-46 274.0 7.1 152 13-177 20-174 (266)
22 2onk_A Molybdate/tungstate ABC 100.0 2.4E-42 8.2E-47 274.8 1.4 149 15-177 14-162 (240)
23 2ihy_A ABC transporter, ATP-bi 100.0 2.6E-41 9E-46 274.2 2.8 155 12-177 33-197 (279)
24 2d2e_A SUFC protein; ABC-ATPas 100.0 4E-40 1.4E-44 263.3 4.7 154 13-177 16-179 (250)
25 2qi9_C Vitamin B12 import ATP- 100.0 7E-40 2.4E-44 261.9 6.1 147 14-177 14-169 (249)
26 2nq2_C Hypothetical ABC transp 100.0 8.6E-40 3E-44 261.9 6.4 143 13-177 18-164 (253)
27 1mv5_A LMRA, multidrug resista 100.0 2.4E-39 8.3E-44 257.7 7.6 150 12-178 14-176 (243)
28 2ff7_A Alpha-hemolysin translo 100.0 1.6E-39 5.5E-44 259.4 6.2 147 13-177 22-181 (247)
29 2zu0_C Probable ATP-dependent 100.0 2.7E-39 9.3E-44 260.8 6.7 155 12-177 32-200 (267)
30 2pjz_A Hypothetical protein ST 100.0 4.3E-39 1.5E-43 259.2 7.0 145 13-177 18-164 (263)
31 2ixe_A Antigen peptide transpo 100.0 1.2E-39 4.1E-44 263.4 3.4 151 13-177 32-192 (271)
32 3nh6_A ATP-binding cassette SU 100.0 1.5E-39 5.2E-44 266.8 3.1 152 4-176 61-225 (306)
33 3gd7_A Fusion complex of cysti 100.0 2.8E-38 9.6E-43 266.7 4.4 147 11-177 32-191 (390)
34 2ghi_A Transport protein; mult 100.0 1.9E-37 6.6E-42 249.1 6.8 146 13-177 33-191 (260)
35 2pze_A Cystic fibrosis transme 100.0 1.4E-36 4.9E-41 239.8 7.7 135 13-177 21-166 (229)
36 3b5x_A Lipid A export ATP-bind 100.0 7.6E-37 2.6E-41 269.6 5.7 148 13-177 356-516 (582)
37 3b60_A Lipid A export ATP-bind 100.0 7.5E-37 2.6E-41 269.6 3.8 148 13-177 356-516 (582)
38 2yl4_A ATP-binding cassette SU 100.0 1.2E-36 4.2E-41 268.9 5.2 150 13-177 357-519 (595)
39 4a82_A Cystic fibrosis transme 100.0 3E-36 1E-40 265.7 7.1 146 13-176 354-512 (578)
40 3qf4_B Uncharacterized ABC tra 100.0 2.7E-36 9.3E-41 266.9 5.9 146 13-176 368-526 (598)
41 2cbz_A Multidrug resistance-as 100.0 1.6E-36 5.6E-41 240.6 3.9 135 13-177 18-163 (237)
42 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-35 4.1E-40 262.3 6.5 153 4-176 349-514 (587)
43 2bbs_A Cystic fibrosis transme 100.0 1E-34 3.5E-39 236.6 7.4 134 13-177 51-195 (290)
44 4f4c_A Multidrug resistance pr 100.0 1.6E-33 5.6E-38 266.9 8.3 156 4-176 1084-1252(1321)
45 3g5u_A MCG1178, multidrug resi 100.0 6.4E-33 2.2E-37 262.3 7.6 154 4-176 395-561 (1284)
46 3bk7_A ABC transporter ATP-bin 100.0 1.4E-32 4.9E-37 243.3 7.8 137 15-177 371-507 (607)
47 3ozx_A RNAse L inhibitor; ATP 100.0 9.4E-33 3.2E-37 241.5 6.5 139 15-177 283-421 (538)
48 4f4c_A Multidrug resistance pr 100.0 1.5E-32 5E-37 260.4 7.5 154 4-176 423-589 (1321)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.8E-32 6.3E-37 239.8 6.9 137 15-177 301-437 (538)
50 3g5u_A MCG1178, multidrug resi 100.0 2.1E-32 7.3E-37 258.7 7.6 148 13-176 1046-1206(1284)
51 3bk7_A ABC transporter ATP-bin 100.0 1.3E-31 4.5E-36 237.1 6.4 143 14-177 106-264 (607)
52 3j16_B RLI1P; ribosome recycli 100.0 1.8E-31 6.1E-36 236.2 7.0 141 14-177 361-503 (608)
53 1yqt_A RNAse L inhibitor; ATP- 100.0 1.7E-31 5.7E-36 233.7 5.5 142 14-176 36-193 (538)
54 3ux8_A Excinuclease ABC, A sub 100.0 3.8E-30 1.3E-34 230.1 3.9 152 13-177 31-240 (670)
55 2iw3_A Elongation factor 3A; a 99.9 8.6E-29 2.9E-33 227.4 4.7 144 13-176 686-936 (986)
56 2iw3_A Elongation factor 3A; a 99.9 1.5E-28 5.3E-33 225.7 5.6 137 11-177 446-584 (986)
57 3ozx_A RNAse L inhibitor; ATP 99.9 4.1E-28 1.4E-32 212.2 5.6 141 16-176 14-173 (538)
58 3j16_B RLI1P; ribosome recycli 99.9 2.3E-27 7.9E-32 209.9 9.2 143 15-176 93-256 (608)
59 3ux8_A Excinuclease ABC, A sub 99.9 6.6E-27 2.3E-31 209.1 5.9 75 97-177 504-582 (670)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.4E-27 4.8E-32 205.3 -8.8 136 16-175 128-276 (460)
61 2r6f_A Excinuclease ABC subuni 99.9 2.1E-24 7.3E-29 197.5 4.3 146 14-176 638-883 (972)
62 3pih_A Uvrabc system protein A 99.9 1.1E-23 3.8E-28 193.0 6.8 73 98-176 767-843 (916)
63 2vf7_A UVRA2, excinuclease ABC 99.9 3.1E-24 1E-28 195.3 2.2 58 119-176 707-768 (842)
64 2ygr_A Uvrabc system protein A 99.9 8.7E-24 3E-28 194.0 4.5 146 14-176 656-901 (993)
65 3b85_A Phosphate starvation-in 99.9 8.9E-26 3E-30 175.7 -8.7 118 11-171 11-134 (208)
66 1tq4_A IIGP1, interferon-induc 99.9 1.7E-25 5.9E-30 189.8 -8.3 139 13-177 36-202 (413)
67 4aby_A DNA repair protein RECN 99.8 5.4E-22 1.8E-26 167.4 5.1 151 13-176 48-332 (415)
68 3aez_A Pantothenate kinase; tr 99.8 2.9E-24 1E-28 176.4 -9.7 123 23-174 87-209 (312)
69 3b9q_A Chloroplast SRP recepto 99.8 1.5E-23 5.2E-28 171.5 -6.3 139 14-176 88-237 (302)
70 3sop_A Neuronal-specific septi 99.8 5.4E-24 1.8E-28 171.6 -12.5 125 33-175 5-129 (270)
71 1ye8_A Protein THEP1, hypothet 99.8 4.8E-22 1.6E-26 151.0 -3.4 108 32-176 2-118 (178)
72 2og2_A Putative signal recogni 99.8 2.9E-22 9.9E-27 167.3 -5.3 136 17-176 148-294 (359)
73 4gp7_A Metallophosphoesterase; 99.8 2.8E-21 9.6E-26 145.3 -1.4 116 18-175 1-117 (171)
74 1e69_A Chromosome segregation 99.8 1.1E-20 3.8E-25 155.3 1.5 44 133-176 211-258 (322)
75 2v9p_A Replication protein E1; 99.8 5.1E-22 1.7E-26 162.5 -9.7 116 13-177 113-229 (305)
76 1z6g_A Guanylate kinase; struc 99.7 1.5E-23 5.2E-28 163.7 -21.0 139 15-176 12-162 (218)
77 2jeo_A Uridine-cytidine kinase 99.7 5.8E-20 2E-24 145.3 -1.9 136 11-173 10-147 (245)
78 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 7.1E-19 2.4E-23 147.1 4.3 42 136-177 274-321 (365)
79 2pt7_A CAG-ALFA; ATPase, prote 99.7 2.7E-18 9.2E-23 141.9 1.3 92 15-170 160-251 (330)
80 3pih_A Uvrabc system protein A 99.7 4.4E-17 1.5E-21 149.5 6.3 105 55-177 386-502 (916)
81 1znw_A Guanylate kinase, GMP k 99.6 4E-21 1.4E-25 148.4 -19.8 137 9-173 5-155 (207)
82 2dpy_A FLII, flagellum-specifi 99.6 2.5E-18 8.6E-23 147.0 -5.7 128 13-176 145-283 (438)
83 2r6f_A Excinuclease ABC subuni 99.6 4.4E-16 1.5E-20 142.8 7.1 80 96-177 450-542 (972)
84 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 4.2E-16 1.4E-20 114.9 2.6 43 134-176 50-98 (148)
85 2qnr_A Septin-2, protein NEDD5 99.6 2.3E-18 7.9E-23 140.5 -10.9 134 11-175 9-144 (301)
86 2vf7_A UVRA2, excinuclease ABC 99.6 3E-15 1E-19 136.4 7.1 59 118-177 356-417 (842)
87 1rj9_A FTSY, signal recognitio 99.5 1E-16 3.5E-21 131.0 -5.6 125 25-173 101-235 (304)
88 1tf7_A KAIC; homohexamer, hexa 99.5 5.1E-15 1.8E-19 128.9 4.1 116 16-175 270-386 (525)
89 1cr0_A DNA primase/helicase; R 99.5 9.4E-16 3.2E-20 123.9 -1.2 136 14-172 23-160 (296)
90 2ygr_A Uvrabc system protein A 99.5 6.5E-15 2.2E-19 135.5 3.3 80 95-176 466-558 (993)
91 2eyu_A Twitching motility prot 99.5 2.6E-15 8.9E-20 120.2 -0.5 102 8-175 9-111 (261)
92 3asz_A Uridine kinase; cytidin 99.5 2.3E-17 8E-22 126.8 -12.0 114 32-175 8-134 (211)
93 2o8b_B DNA mismatch repair pro 99.5 5.1E-16 1.7E-20 144.2 -7.0 109 13-176 769-885 (1022)
94 1ewq_A DNA mismatch repair pro 99.4 3.2E-15 1.1E-19 135.3 -2.3 104 13-176 566-675 (765)
95 2rcn_A Probable GTPase ENGC; Y 99.4 9.4E-16 3.2E-20 127.8 -5.8 125 16-160 206-332 (358)
96 1tf7_A KAIC; homohexamer, hexa 99.4 1.7E-17 5.9E-22 144.5 -17.5 123 13-172 25-151 (525)
97 3thx_B DNA mismatch repair pro 99.4 1.9E-15 6.6E-20 138.8 -5.0 110 12-176 659-769 (918)
98 2bbw_A Adenylate kinase 4, AK4 99.4 4.5E-16 1.5E-20 122.8 -8.6 127 32-176 29-185 (246)
99 1pui_A ENGB, probable GTP-bind 99.4 3.4E-15 1.2E-19 113.9 -4.2 145 14-177 16-186 (210)
100 3kta_B Chromosome segregation 99.4 6.4E-14 2.2E-18 105.7 2.5 43 134-176 57-103 (173)
101 2qag_C Septin-7; cell cycle, c 99.4 2.2E-15 7.6E-20 128.0 -6.9 130 11-175 22-156 (418)
102 2yv5_A YJEQ protein; hydrolase 99.4 8.9E-15 3E-19 119.3 -3.8 114 32-154 167-300 (302)
103 2obl_A ESCN; ATPase, hydrolase 99.4 2.5E-14 8.5E-19 118.9 -2.0 128 13-176 59-196 (347)
104 2i3b_A HCR-ntpase, human cance 99.4 3E-15 1E-19 114.5 -7.4 115 32-175 3-123 (189)
105 3szr_A Interferon-induced GTP- 99.4 7.6E-15 2.6E-19 130.0 -6.1 69 33-108 48-122 (608)
106 3thx_A DNA mismatch repair pro 99.3 6.6E-14 2.3E-18 128.9 -1.4 107 13-176 649-758 (934)
107 3qkt_A DNA double-strand break 99.3 2.6E-13 8.8E-18 112.1 1.3 43 134-176 241-289 (339)
108 1nlf_A Regulatory protein REPA 99.3 1.8E-12 6E-17 104.0 6.1 138 6-176 13-152 (279)
109 1pzn_A RAD51, DNA repair and r 99.3 4.4E-15 1.5E-19 123.4 -9.5 115 14-175 118-247 (349)
110 4ad8_A DNA repair protein RECN 99.2 3.1E-12 1.1E-16 111.1 4.4 40 137-176 392-434 (517)
111 1zp6_A Hypothetical protein AT 99.2 4.5E-15 1.5E-19 112.1 -12.1 125 22-163 5-131 (191)
112 1htw_A HI0065; nucleotide-bind 99.2 1.4E-13 4.8E-18 102.4 -4.2 78 13-106 20-97 (158)
113 2qm8_A GTPase/ATPase; G protei 99.2 1.3E-14 4.6E-19 120.0 -11.0 148 13-176 42-247 (337)
114 1odf_A YGR205W, hypothetical 3 99.2 2.1E-13 7.1E-18 110.7 -4.1 123 32-176 33-169 (290)
115 2ehv_A Hypothetical protein PH 99.2 6.8E-14 2.3E-18 109.3 -7.8 129 14-173 17-149 (251)
116 2o5v_A DNA replication and rep 99.2 1.7E-12 6E-17 108.2 0.2 42 136-177 259-310 (359)
117 1wb9_A DNA mismatch repair pro 99.2 1.8E-12 6.2E-17 117.8 -0.3 110 11-176 593-703 (800)
118 1p9r_A General secretion pathw 99.2 4.4E-14 1.5E-18 120.0 -10.5 132 15-164 158-314 (418)
119 2f1r_A Molybdopterin-guanine d 99.2 1.1E-14 3.8E-19 109.7 -13.0 107 32-163 4-125 (171)
120 2yhs_A FTSY, cell division pro 99.1 2.5E-13 8.6E-18 117.2 -7.4 135 16-174 283-427 (503)
121 2qag_B Septin-6, protein NEDD5 99.1 3.5E-13 1.2E-17 114.5 -6.5 143 10-175 25-192 (427)
122 3auy_A DNA double-strand break 99.1 7E-11 2.4E-15 98.5 6.0 40 137-176 276-322 (371)
123 1u0l_A Probable GTPase ENGC; p 99.1 1E-12 3.4E-17 107.0 -5.3 108 22-144 165-294 (301)
124 4a74_A DNA repair and recombin 99.1 5.4E-13 1.9E-17 102.9 -6.8 39 14-63 12-51 (231)
125 2gza_A Type IV secretion syste 99.1 1.8E-11 6.1E-16 102.0 1.7 67 15-92 164-231 (361)
126 1w1w_A Structural maintenance 99.1 4.6E-11 1.6E-15 101.4 3.0 40 137-176 329-372 (430)
127 1in4_A RUVB, holliday junction 99.1 3.4E-12 1.2E-16 105.0 -4.3 137 7-153 25-174 (334)
128 1nij_A Hypothetical protein YJ 99.0 5.8E-15 2E-19 121.1 -21.4 127 32-168 6-166 (318)
129 1t9h_A YLOQ, probable GTPase E 99.0 5.7E-12 1.9E-16 103.0 -3.7 117 21-149 168-303 (307)
130 3jvv_A Twitching mobility prot 99.0 3E-11 1E-15 100.6 0.4 45 14-69 104-156 (356)
131 2ewv_A Twitching motility prot 99.0 4.3E-11 1.5E-15 100.1 1.2 95 12-169 124-219 (372)
132 1lw7_A Transcriptional regulat 99.0 9.5E-12 3.3E-16 103.5 -2.9 138 15-169 157-329 (365)
133 2w0m_A SSO2452; RECA, SSPF, un 99.0 4.4E-12 1.5E-16 97.6 -4.7 126 14-176 10-142 (235)
134 3e70_C DPA, signal recognition 98.9 1.4E-11 4.7E-16 101.6 -5.1 121 22-169 125-253 (328)
135 2cvh_A DNA repair and recombin 98.9 1.2E-10 4.1E-15 89.1 0.5 111 14-175 7-121 (220)
136 1sq5_A Pantothenate kinase; P- 98.9 2.3E-11 7.7E-16 99.2 -5.5 126 14-173 49-198 (308)
137 2x8a_A Nuclear valosin-contain 98.9 3.3E-14 1.1E-18 114.4 -22.5 129 13-170 33-164 (274)
138 1s96_A Guanylate kinase, GMP k 98.8 5.7E-12 1.9E-16 98.3 -9.9 69 19-100 9-79 (219)
139 2oap_1 GSPE-2, type II secreti 98.8 5.5E-11 1.9E-15 103.3 -7.3 51 13-74 247-297 (511)
140 1udx_A The GTP-binding protein 98.7 4.4E-11 1.5E-15 101.5 -8.8 126 15-176 146-283 (416)
141 1vma_A Cell division protein F 98.7 4.1E-09 1.4E-13 86.0 2.8 99 18-170 96-197 (306)
142 1sxj_E Activator 1 40 kDa subu 98.7 8.3E-09 2.8E-13 84.5 3.5 110 33-175 39-149 (354)
143 1iy2_A ATP-dependent metallopr 98.6 8.3E-12 2.8E-16 99.9 -17.4 129 14-168 63-194 (278)
144 1ixz_A ATP-dependent metallopr 98.5 1.5E-11 5.2E-16 96.8 -17.4 130 14-169 39-171 (254)
145 1n0w_A DNA repair protein RAD5 98.5 1.7E-08 5.7E-13 78.1 0.1 50 14-74 11-68 (243)
146 3c8u_A Fructokinase; YP_612366 98.5 1E-10 3.5E-15 89.7 -12.4 113 23-169 19-140 (208)
147 1ls1_A Signal recognition part 98.5 1.1E-07 3.8E-12 76.9 4.8 105 17-174 91-196 (295)
148 3euj_A Chromosome partition pr 98.4 2.4E-08 8.4E-13 86.0 -0.7 52 13-76 17-68 (483)
149 2bdt_A BH3686; alpha-beta prot 98.4 1.8E-11 6E-16 92.3 -18.4 121 32-176 4-132 (189)
150 3tr0_A Guanylate kinase, GMP k 98.3 1.2E-09 4.2E-14 82.7 -9.3 125 20-168 1-127 (205)
151 3ec2_A DNA replication protein 98.3 1.3E-07 4.6E-12 70.3 0.8 37 20-67 32-68 (180)
152 3k1j_A LON protease, ATP-depen 98.3 2.9E-09 9.8E-14 94.1 -10.2 149 7-174 41-215 (604)
153 1qhl_A Protein (cell division 98.2 2.8E-07 9.5E-12 72.1 0.4 60 20-91 22-91 (227)
154 2kjq_A DNAA-related protein; s 98.1 6.4E-07 2.2E-11 65.3 0.3 28 25-63 35-62 (149)
155 2px0_A Flagellar biosynthesis 98.0 7.7E-06 2.6E-10 66.2 6.4 91 32-176 107-197 (296)
156 1oix_A RAS-related protein RAB 97.9 8E-08 2.8E-12 72.2 -6.9 27 149-177 153-179 (191)
157 1svm_A Large T antigen; AAA+ f 97.9 3E-08 1E-12 83.0 -10.3 136 13-170 156-312 (377)
158 3lda_A DNA repair protein RAD5 97.8 1.1E-05 3.8E-10 67.9 3.2 49 14-73 165-221 (400)
159 2ius_A DNA translocase FTSK; n 97.7 2.3E-08 7.8E-13 86.8 -14.5 133 18-173 159-311 (512)
160 1ni3_A YCHF GTPase, YCHF GTP-b 97.7 3.2E-08 1.1E-12 83.3 -13.4 121 22-176 16-158 (392)
161 2f9l_A RAB11B, member RAS onco 97.7 5.7E-07 2E-11 67.6 -5.6 25 150-176 130-154 (199)
162 2r6a_A DNAB helicase, replicat 97.7 4.3E-05 1.5E-09 65.1 5.1 126 14-174 191-328 (454)
163 2dhr_A FTSH; AAA+ protein, hex 97.5 1.5E-07 5E-12 81.6 -12.4 127 14-170 54-187 (499)
164 2qtf_A Protein HFLX, GTP-bindi 97.5 1.1E-06 3.6E-11 73.3 -6.8 125 33-176 182-340 (364)
165 1zu4_A FTSY; GTPase, signal re 97.5 1.7E-05 5.8E-10 64.8 0.2 81 16-107 95-187 (320)
166 3lnc_A Guanylate kinase, GMP k 97.4 1.3E-05 4.3E-10 61.9 -1.0 38 13-61 14-52 (231)
167 4e22_A Cytidylate kinase; P-lo 97.4 1.4E-05 4.7E-10 62.9 -1.4 58 24-92 25-96 (252)
168 3vaa_A Shikimate kinase, SK; s 97.3 2.1E-05 7.2E-10 59.3 -0.9 46 1-58 1-46 (199)
169 2zr9_A Protein RECA, recombina 97.3 1.8E-05 6.1E-10 65.4 -1.6 25 148-172 126-152 (349)
170 4eun_A Thermoresistant glucoki 97.2 5.8E-06 2E-10 62.5 -5.1 70 22-106 25-95 (200)
171 2dr3_A UPF0273 protein PH0284; 97.2 3.4E-06 1.2E-10 65.0 -6.8 27 14-44 10-37 (247)
172 3uie_A Adenylyl-sulfate kinase 97.1 1.7E-05 5.9E-10 59.8 -3.3 56 9-76 8-65 (200)
173 3kta_A Chromosome segregation 96.9 0.00014 4.6E-09 53.7 -0.5 67 14-92 13-89 (182)
174 4a1f_A DNAB helicase, replicat 96.9 9.7E-05 3.3E-09 60.9 -1.4 107 14-173 34-141 (338)
175 2j41_A Guanylate kinase; GMP, 96.8 0.00015 5E-09 54.3 -0.4 34 22-66 2-35 (207)
176 1sxj_C Activator 1 40 kDa subu 96.8 1.3E-06 4.5E-11 71.4 -13.2 49 7-66 25-75 (340)
177 3t34_A Dynamin-related protein 96.8 1.5E-05 5E-10 65.8 -7.1 45 13-71 24-70 (360)
178 3a00_A Guanylate kinase, GMP k 96.8 0.00018 6.3E-09 53.5 -0.4 25 32-63 3-27 (186)
179 3nwj_A ATSK2; P loop, shikimat 96.7 0.00017 5.9E-09 56.9 -1.0 37 12-59 31-70 (250)
180 1lvg_A Guanylate kinase, GMP k 96.6 0.0003 1E-08 53.1 -0.2 25 152-176 116-141 (198)
181 3tqc_A Pantothenate kinase; bi 96.4 3.3E-05 1.1E-09 63.2 -7.4 43 13-62 73-117 (321)
182 2e87_A Hypothetical protein PH 96.1 0.0012 4E-08 54.3 0.8 40 135-175 225-265 (357)
183 1knq_A Gluconate kinase; ALFA/ 95.7 0.00025 8.5E-09 51.9 -4.8 49 32-91 10-59 (175)
184 2ce7_A Cell division protein F 95.4 0.01 3.5E-07 50.9 3.8 27 144-170 93-119 (476)
185 3bh0_A DNAB-like replicative h 95.4 0.00063 2.2E-08 55.1 -3.6 27 14-44 56-82 (315)
186 2vp4_A Deoxynucleoside kinase; 95.3 0.0027 9.1E-08 48.8 -0.2 42 19-75 13-54 (230)
187 1cke_A CK, MSSA, protein (cyti 95.3 0.0017 5.8E-08 49.2 -1.3 54 32-92 7-74 (227)
188 1kgd_A CASK, peripheral plasma 94.6 0.0048 1.7E-07 45.4 -0.5 30 32-68 7-37 (180)
189 3hr8_A Protein RECA; alpha and 94.4 0.0018 6E-08 53.7 -3.7 81 14-106 47-130 (356)
190 1rz3_A Hypothetical protein rb 94.3 0.0037 1.3E-07 46.9 -1.7 41 23-74 19-59 (201)
191 3kl4_A SRP54, signal recogniti 94.1 0.039 1.3E-06 46.8 3.9 30 32-68 99-128 (433)
192 2p67_A LAO/AO transport system 94.0 0.0027 9.1E-08 51.9 -3.3 49 13-72 43-91 (341)
193 3ney_A 55 kDa erythrocyte memb 93.8 0.01 3.4E-07 45.1 -0.2 24 32-62 21-44 (197)
194 3m6a_A ATP-dependent protease 93.8 0.0057 1.9E-07 53.2 -1.8 47 14-72 97-143 (543)
195 3cr8_A Sulfate adenylyltranfer 93.7 0.0036 1.2E-07 54.7 -3.2 43 22-75 365-409 (552)
196 1lw7_A Transcriptional regulat 93.5 0.01 3.5E-07 48.7 -0.7 41 137-177 254-304 (365)
197 2o5v_A DNA replication and rep 93.4 0.01 3.5E-07 49.1 -0.9 34 14-59 15-48 (359)
198 3tau_A Guanylate kinase, GMP k 93.0 0.015 5.2E-07 43.8 -0.4 25 32-63 10-34 (208)
199 1w1w_A Structural maintenance 92.8 0.015 5E-07 48.9 -0.8 34 21-65 21-54 (430)
200 4eaq_A DTMP kinase, thymidylat 92.7 0.014 4.8E-07 44.9 -1.0 37 15-62 12-51 (229)
201 4ad8_A DNA repair protein RECN 91.8 0.019 6.6E-07 49.4 -1.3 32 14-57 49-80 (517)
202 3euj_A Chromosome partition pr 91.3 0.13 4.5E-06 44.1 3.5 41 135-176 373-430 (483)
203 2dy1_A Elongation factor G; tr 91.0 0.033 1.1E-06 49.5 -0.6 60 21-92 4-67 (665)
204 2qt1_A Nicotinamide riboside k 90.9 0.038 1.3E-06 41.2 -0.3 29 22-61 17-45 (207)
205 1mky_A Probable GTP-binding pr 90.9 0.063 2.2E-06 45.1 1.0 36 33-75 183-230 (439)
206 1m7g_A Adenylylsulfate kinase; 90.7 0.017 5.7E-07 43.5 -2.5 46 18-74 17-64 (211)
207 1f2t_A RAD50 ABC-ATPase; DNA d 90.7 0.033 1.1E-06 39.9 -0.8 26 17-47 15-40 (149)
208 2www_A Methylmalonic aciduria 89.8 0.042 1.4E-06 45.0 -1.0 36 32-74 76-111 (349)
209 1kag_A SKI, shikimate kinase I 89.8 0.063 2.2E-06 38.5 0.1 24 32-62 6-29 (173)
210 1j8m_F SRP54, signal recogniti 89.8 0.042 1.5E-06 44.0 -1.0 47 17-75 89-136 (297)
211 1f6b_A SAR1; gtpases, N-termin 89.6 0.028 9.5E-07 41.6 -2.1 35 13-59 13-47 (198)
212 2xau_A PRE-mRNA-splicing facto 89.2 0.037 1.3E-06 50.1 -1.9 39 136-174 185-224 (773)
213 2ffh_A Protein (FFH); SRP54, s 89.2 0.043 1.5E-06 46.4 -1.4 48 17-77 91-138 (425)
214 1fnn_A CDC6P, cell division co 88.0 0.39 1.3E-05 38.6 3.6 24 33-63 47-70 (389)
215 3ice_A Transcription terminati 87.3 0.087 3E-06 44.3 -0.7 32 18-60 166-197 (422)
216 2pez_A Bifunctional 3'-phospho 87.3 0.044 1.5E-06 39.8 -2.3 25 32-63 7-31 (179)
217 2q6t_A DNAB replication FORK h 86.8 0.35 1.2E-05 40.6 2.8 27 14-44 188-214 (444)
218 3qks_A DNA double-strand break 86.0 0.1 3.6E-06 39.1 -0.8 26 18-48 16-41 (203)
219 2qby_A CDC6 homolog 1, cell di 86.0 0.19 6.3E-06 40.4 0.6 24 32-62 47-70 (386)
220 3qkt_A DNA double-strand break 85.3 0.11 3.8E-06 42.1 -1.0 25 18-47 16-40 (339)
221 2eyu_A Twitching motility prot 85.2 0.0018 6.3E-08 51.1 -11.4 36 137-174 168-205 (261)
222 1b9m_A Protein (mode); DNA-bin 85.2 0.063 2.1E-06 41.8 -2.5 52 110-162 43-94 (265)
223 2ga8_A Hypothetical 39.9 kDa p 85.1 0.12 4E-06 42.7 -1.0 32 14-47 10-41 (359)
224 1m2o_B GTP-binding protein SAR 83.3 0.16 5.6E-06 37.0 -0.8 34 14-59 12-45 (190)
225 1jjv_A Dephospho-COA kinase; P 83.0 0.3 1E-05 36.0 0.6 21 32-59 4-24 (206)
226 2ewv_A Twitching motility prot 82.5 0.0039 1.3E-07 51.7 -11.1 32 141-174 283-316 (372)
227 3t61_A Gluconokinase; PSI-biol 81.7 0.28 9.6E-06 36.1 -0.0 21 32-59 20-40 (202)
228 2qor_A Guanylate kinase; phosp 81.3 0.24 8.1E-06 36.8 -0.6 21 32-59 14-34 (204)
229 2if2_A Dephospho-COA kinase; a 80.8 0.33 1.1E-05 35.7 0.1 21 32-59 3-23 (204)
230 4fcw_A Chaperone protein CLPB; 80.3 0.27 9.3E-06 38.5 -0.6 50 10-66 20-76 (311)
231 2qag_A Septin-2, protein NEDD5 80.0 0.24 8.2E-06 40.6 -1.0 23 33-62 40-62 (361)
232 1y63_A LMAJ004144AAA protein; 79.1 0.31 1E-05 35.6 -0.6 27 18-48 2-28 (184)
233 2wji_A Ferrous iron transport 78.8 0.52 1.8E-05 33.3 0.6 21 33-60 6-26 (165)
234 1ega_A Protein (GTP-binding pr 77.5 0.34 1.2E-05 38.6 -0.8 22 32-60 10-31 (301)
235 2yvu_A Probable adenylyl-sulfa 76.8 0.33 1.1E-05 35.3 -1.0 29 32-67 15-43 (186)
236 1ex7_A Guanylate kinase; subst 76.0 0.77 2.6E-05 34.1 0.8 16 33-48 4-19 (186)
237 2zej_A Dardarin, leucine-rich 75.9 0.73 2.5E-05 33.1 0.7 21 33-60 5-25 (184)
238 3auy_A DNA double-strand break 75.8 0.33 1.1E-05 39.8 -1.4 27 16-47 16-42 (371)
239 2jaq_A Deoxyguanosine kinase; 75.3 0.44 1.5E-05 34.7 -0.7 16 32-47 2-17 (205)
240 2wjg_A FEOB, ferrous iron tran 74.8 0.78 2.7E-05 32.7 0.6 20 33-59 10-29 (188)
241 3lw7_A Adenylate kinase relate 74.3 0.49 1.7E-05 33.2 -0.6 16 32-47 3-18 (179)
242 3kb2_A SPBC2 prophage-derived 74.1 0.66 2.2E-05 32.7 0.0 16 32-47 3-18 (173)
243 2p5t_B PEZT; postsegregational 72.9 1.1 3.7E-05 34.4 1.0 34 32-74 34-67 (253)
244 3lxx_A GTPase IMAP family memb 72.8 1 3.5E-05 34.0 0.9 24 33-63 32-55 (239)
245 2z0h_A DTMP kinase, thymidylat 71.4 0.66 2.3E-05 33.6 -0.5 18 32-49 2-19 (197)
246 3b9p_A CG5977-PA, isoform A; A 71.0 2.9 0.0001 32.4 3.2 32 143-174 97-128 (297)
247 1np6_A Molybdopterin-guanine d 70.5 0.69 2.4E-05 33.9 -0.6 22 32-60 8-29 (174)
248 2ohf_A Protein OLA1, GTP-bindi 69.8 1.3 4.4E-05 37.0 0.8 34 32-72 24-68 (396)
249 2gj8_A MNME, tRNA modification 69.1 1.1 3.7E-05 31.9 0.2 22 32-60 6-27 (172)
250 4ag6_A VIRB4 ATPase, type IV s 69.0 1 3.5E-05 36.9 0.1 32 32-70 37-68 (392)
251 3cm0_A Adenylate kinase; ATP-b 68.3 1.1 3.6E-05 32.2 0.0 16 32-47 6-21 (186)
252 3r20_A Cytidylate kinase; stru 67.5 0.55 1.9E-05 36.3 -1.8 30 32-68 11-43 (233)
253 1ly1_A Polynucleotide kinase; 67.2 1.2 4E-05 31.6 0.1 16 32-47 4-19 (181)
254 1q3t_A Cytidylate kinase; nucl 66.8 0.94 3.2E-05 34.3 -0.5 16 32-47 18-33 (236)
255 1kht_A Adenylate kinase; phosp 66.8 1.2 4.1E-05 31.9 0.0 16 32-47 5-20 (192)
256 1qhx_A CPT, protein (chloramph 66.5 1.7 5.8E-05 30.9 0.8 21 32-59 5-25 (178)
257 1ypw_A Transitional endoplasmi 66.1 1.1 3.7E-05 40.7 -0.4 25 32-63 240-264 (806)
258 3bgw_A DNAB-like replicative h 65.7 0.52 1.8E-05 39.8 -2.4 27 14-44 185-211 (444)
259 2ze6_A Isopentenyl transferase 64.9 1.6 5.5E-05 33.6 0.4 19 33-58 4-22 (253)
260 1vht_A Dephospho-COA kinase; s 64.6 1.3 4.5E-05 32.8 -0.1 21 32-59 6-26 (218)
261 1gtv_A TMK, thymidylate kinase 64.4 0.38 1.3E-05 35.5 -3.2 16 32-47 2-17 (214)
262 1via_A Shikimate kinase; struc 64.2 1.9 6.4E-05 30.7 0.7 16 32-47 6-21 (175)
263 3dm5_A SRP54, signal recogniti 63.5 24 0.00083 29.6 7.5 22 32-60 102-123 (443)
264 1nks_A Adenylate kinase; therm 63.5 1.3 4.4E-05 31.7 -0.3 17 32-48 3-19 (194)
265 1gvn_B Zeta; postsegregational 63.0 2.4 8.2E-05 33.4 1.1 20 32-58 35-54 (287)
266 2pbr_A DTMP kinase, thymidylat 62.9 1.2 4.2E-05 31.9 -0.5 17 32-48 2-18 (195)
267 1lv7_A FTSH; alpha/beta domain 62.5 2.1 7.1E-05 32.6 0.7 21 33-60 48-68 (257)
268 2rhm_A Putative kinase; P-loop 61.3 1.5 5.2E-05 31.5 -0.3 16 32-47 7-22 (193)
269 1uf9_A TT1252 protein; P-loop, 61.0 1.7 5.9E-05 31.4 -0.0 21 32-59 10-30 (203)
270 2xb4_A Adenylate kinase; ATP-b 61.0 1.4 4.8E-05 33.1 -0.6 16 32-47 2-17 (223)
271 3trf_A Shikimate kinase, SK; a 60.2 2.6 9E-05 30.1 0.9 16 32-47 7-22 (185)
272 3llm_A ATP-dependent RNA helic 60.2 1.9 6.4E-05 32.5 0.0 29 13-45 63-91 (235)
273 2v54_A DTMP kinase, thymidylat 60.0 1.9 6.5E-05 31.3 0.1 16 32-47 6-21 (204)
274 3fb4_A Adenylate kinase; psych 59.7 1.5 5.2E-05 32.3 -0.5 15 33-47 3-17 (216)
275 2plr_A DTMP kinase, probable t 59.7 1.9 6.6E-05 31.3 0.1 16 32-47 6-21 (213)
276 3k53_A Ferrous iron transport 59.5 2 7E-05 33.1 0.2 22 33-61 6-27 (271)
277 3sr0_A Adenylate kinase; phosp 59.3 1.6 5.4E-05 32.8 -0.5 15 33-47 3-17 (206)
278 1tev_A UMP-CMP kinase; ploop, 58.8 2.1 7E-05 30.6 0.1 16 32-47 5-20 (196)
279 3dl0_A Adenylate kinase; phosp 58.5 1.7 5.7E-05 32.1 -0.5 15 33-47 3-17 (216)
280 3iev_A GTP-binding protein ERA 58.3 2.2 7.4E-05 33.9 0.1 22 32-60 12-33 (308)
281 3iij_A Coilin-interacting nucl 57.7 3.1 0.00011 29.7 0.9 16 32-47 13-28 (180)
282 2pt5_A Shikimate kinase, SK; a 57.4 1.7 5.9E-05 30.5 -0.5 15 33-47 3-17 (168)
283 2ged_A SR-beta, signal recogni 57.3 2.6 9E-05 30.0 0.4 21 33-60 51-71 (193)
284 2nzj_A GTP-binding protein REM 56.9 2.9 0.0001 29.0 0.6 21 33-60 7-27 (175)
285 1zak_A Adenylate kinase; ATP:A 56.5 1.6 5.6E-05 32.4 -0.8 17 32-48 7-23 (222)
286 1a7j_A Phosphoribulokinase; tr 56.2 4.2 0.00014 32.0 1.5 18 32-49 7-24 (290)
287 2c95_A Adenylate kinase 1; tra 56.2 2.1 7.1E-05 30.8 -0.3 17 32-48 11-27 (196)
288 1e6c_A Shikimate kinase; phosp 55.6 2.6 8.9E-05 29.6 0.1 16 32-47 4-19 (173)
289 1z2a_A RAS-related protein RAB 55.4 3 0.0001 28.7 0.5 20 33-59 8-27 (168)
290 1zd8_A GTP:AMP phosphotransfer 55.4 1.7 5.9E-05 32.5 -0.9 16 32-47 9-24 (227)
291 2erx_A GTP-binding protein DI- 54.8 3.3 0.00011 28.5 0.6 20 33-59 6-25 (172)
292 2cdn_A Adenylate kinase; phosp 54.5 2.1 7.1E-05 31.2 -0.5 16 32-47 22-37 (201)
293 3q85_A GTP-binding protein REM 54.5 3.4 0.00012 28.5 0.6 20 33-59 5-24 (169)
294 1kao_A RAP2A; GTP-binding prot 54.4 3.2 0.00011 28.4 0.4 20 33-59 6-25 (167)
295 2dyk_A GTP-binding protein; GT 54.2 3.2 0.00011 28.4 0.4 20 33-59 4-23 (161)
296 2bwj_A Adenylate kinase 5; pho 54.2 2.3 8E-05 30.6 -0.3 16 32-47 14-29 (199)
297 3q72_A GTP-binding protein RAD 54.1 2.8 9.5E-05 28.9 0.1 21 33-60 5-25 (166)
298 1fzq_A ADP-ribosylation factor 54.0 2.8 9.6E-05 29.9 0.1 21 33-60 19-39 (181)
299 1aky_A Adenylate kinase; ATP:A 53.9 2.2 7.4E-05 31.7 -0.5 17 32-48 6-22 (220)
300 1xjc_A MOBB protein homolog; s 53.9 2.1 7.3E-05 31.2 -0.6 22 32-60 6-27 (169)
301 1u8z_A RAS-related protein RAL 53.6 3.3 0.00011 28.3 0.5 20 33-59 7-26 (168)
302 1z0j_A RAB-22, RAS-related pro 53.6 3.3 0.00011 28.5 0.4 21 33-60 9-29 (170)
303 2vli_A Antibiotic resistance p 53.1 4 0.00014 28.9 0.8 16 32-47 7-22 (183)
304 3tw8_B RAS-related protein RAB 53.1 3.4 0.00011 28.8 0.4 21 33-60 12-32 (181)
305 1wf3_A GTP-binding protein; GT 53.0 3 0.0001 33.0 0.1 22 32-60 9-30 (301)
306 1ukz_A Uridylate kinase; trans 52.9 3 0.0001 30.3 0.1 16 32-47 17-32 (203)
307 1c1y_A RAS-related protein RAP 52.8 3.5 0.00012 28.3 0.5 20 33-59 6-25 (167)
308 3lxw_A GTPase IMAP family memb 52.6 3.4 0.00011 31.5 0.4 22 32-60 23-44 (247)
309 1ky3_A GTP-binding protein YPT 52.6 3.5 0.00012 28.7 0.4 20 33-59 11-30 (182)
310 1ek0_A Protein (GTP-binding pr 52.6 3.6 0.00012 28.3 0.5 20 33-59 6-25 (170)
311 3b1v_A Ferrous iron uptake tra 52.4 3.7 0.00013 32.0 0.6 21 33-60 6-26 (272)
312 2iyv_A Shikimate kinase, SK; t 52.3 1.9 6.7E-05 30.8 -1.0 17 32-48 4-20 (184)
313 2ce2_X GTPase HRAS; signaling 52.2 3.1 0.00011 28.3 0.1 20 33-59 6-25 (166)
314 2wwf_A Thymidilate kinase, put 52.1 2.7 9.1E-05 30.7 -0.3 17 32-48 12-28 (212)
315 1z08_A RAS-related protein RAB 52.0 3.6 0.00012 28.4 0.4 20 33-59 9-28 (170)
316 1wms_A RAB-9, RAB9, RAS-relate 52.0 3.6 0.00012 28.6 0.4 20 33-59 10-29 (177)
317 3ake_A Cytidylate kinase; CMP 52.0 3.7 0.00013 29.7 0.5 16 32-47 4-19 (208)
318 2lkc_A Translation initiation 51.9 3.9 0.00013 28.5 0.6 20 33-59 11-30 (178)
319 1qf9_A UMP/CMP kinase, protein 51.9 2.7 9.2E-05 29.9 -0.3 17 32-48 8-24 (194)
320 1svi_A GTP-binding protein YSX 51.1 3.4 0.00012 29.4 0.1 20 33-59 26-45 (195)
321 3hjn_A DTMP kinase, thymidylat 51.1 2.6 8.8E-05 31.2 -0.5 17 31-47 1-17 (197)
322 3umf_A Adenylate kinase; rossm 51.0 4.4 0.00015 30.7 0.8 15 33-47 32-46 (217)
323 1jbk_A CLPB protein; beta barr 50.8 4.6 0.00016 28.2 0.8 20 33-59 46-65 (195)
324 1g16_A RAS-related protein SEC 50.8 3.4 0.00012 28.5 0.1 20 33-59 6-25 (170)
325 1r2q_A RAS-related protein RAB 50.8 4 0.00014 28.0 0.5 20 33-59 9-28 (170)
326 3bos_A Putative DNA replicatio 50.6 4.4 0.00015 29.7 0.7 15 33-47 55-69 (242)
327 2cxx_A Probable GTP-binding pr 50.5 3.5 0.00012 29.1 0.1 21 33-60 4-24 (190)
328 1nn5_A Similar to deoxythymidy 50.4 2.9 0.0001 30.4 -0.3 17 32-48 11-27 (215)
329 2hxs_A RAB-26, RAS-related pro 50.3 4.4 0.00015 28.2 0.7 20 33-59 9-28 (178)
330 1sxj_D Activator 1 41 kDa subu 50.3 3.2 0.00011 32.8 -0.2 37 9-47 39-75 (353)
331 3pqc_A Probable GTP-binding pr 50.2 3.6 0.00012 29.1 0.1 21 33-60 26-46 (195)
332 2w58_A DNAI, primosome compone 50.1 4.6 0.00016 29.2 0.7 21 33-60 57-77 (202)
333 3clv_A RAB5 protein, putative; 50.0 4.1 0.00014 28.8 0.4 21 33-60 10-30 (208)
334 1e4v_A Adenylate kinase; trans 50.0 2.4 8.1E-05 31.4 -0.9 16 33-48 3-18 (214)
335 2fn4_A P23, RAS-related protei 49.8 3.5 0.00012 28.7 0.1 21 33-60 12-32 (181)
336 1r8s_A ADP-ribosylation factor 49.8 4.2 0.00014 27.9 0.5 19 33-58 3-21 (164)
337 4dsu_A GTPase KRAS, isoform 2B 49.7 4.2 0.00014 28.6 0.4 20 33-59 7-26 (189)
338 2oil_A CATX-8, RAS-related pro 49.6 4.3 0.00015 28.9 0.5 20 33-59 28-47 (193)
339 1moz_A ARL1, ADP-ribosylation 49.4 3.1 0.0001 29.3 -0.3 19 33-58 21-39 (183)
340 3bc1_A RAS-related protein RAB 48.6 4.5 0.00015 28.5 0.5 20 33-59 14-33 (195)
341 3b9p_A CG5977-PA, isoform A; A 48.5 4.8 0.00017 31.1 0.7 20 33-59 57-76 (297)
342 1upt_A ARL1, ADP-ribosylation 48.3 4.6 0.00016 27.8 0.5 20 33-59 10-29 (171)
343 1jal_A YCHF protein; nucleotid 48.2 5.8 0.0002 32.6 1.1 20 33-59 5-24 (363)
344 3cf0_A Transitional endoplasmi 48.0 5 0.00017 31.4 0.7 22 33-61 52-73 (301)
345 2g6b_A RAS-related protein RAB 47.7 4.7 0.00016 28.1 0.5 20 33-59 13-32 (180)
346 1z0f_A RAB14, member RAS oncog 47.6 4.8 0.00016 27.9 0.5 20 33-59 18-37 (179)
347 3cbq_A GTP-binding protein REM 47.5 4.7 0.00016 29.2 0.4 20 33-59 26-45 (195)
348 3a4m_A L-seryl-tRNA(SEC) kinas 47.4 4 0.00014 31.3 0.1 16 32-47 6-21 (260)
349 3ihw_A Centg3; RAS, centaurin, 47.1 4.8 0.00016 28.8 0.4 19 33-58 23-41 (184)
350 2zts_A Putative uncharacterize 47.0 4.4 0.00015 30.1 0.2 27 14-44 17-44 (251)
351 1ksh_A ARF-like protein 2; sma 47.0 5.2 0.00018 28.2 0.6 20 33-59 21-40 (186)
352 3con_A GTPase NRAS; structural 46.7 5 0.00017 28.4 0.5 20 33-59 24-43 (190)
353 1nrj_B SR-beta, signal recogni 46.7 5 0.00017 29.2 0.5 21 33-60 15-35 (218)
354 3tlx_A Adenylate kinase 2; str 46.4 5.9 0.0002 30.1 0.8 17 32-48 31-47 (243)
355 3be4_A Adenylate kinase; malar 46.2 2.9 0.0001 31.0 -0.9 16 32-47 7-22 (217)
356 2a9k_A RAS-related protein RAL 46.1 5.2 0.00018 28.0 0.5 20 33-59 21-40 (187)
357 2cjw_A GTP-binding protein GEM 45.7 5.3 0.00018 28.8 0.5 20 33-59 9-28 (192)
358 1vg8_A RAS-related protein RAB 45.5 5.3 0.00018 28.7 0.4 20 33-59 11-30 (207)
359 2y8e_A RAB-protein 6, GH09086P 45.3 4.6 0.00016 28.0 0.1 20 33-59 17-36 (179)
360 3lv8_A DTMP kinase, thymidylat 45.3 1.9 6.5E-05 33.2 -2.1 20 30-49 27-46 (236)
361 2efe_B Small GTP-binding prote 45.3 5.3 0.00018 27.9 0.4 21 33-60 15-35 (181)
362 1ltq_A Polynucleotide kinase; 45.3 6.2 0.00021 30.6 0.8 16 32-47 4-19 (301)
363 2bov_A RAla, RAS-related prote 45.2 5.4 0.00019 28.5 0.5 20 33-59 17-36 (206)
364 1v5w_A DMC1, meiotic recombina 45.0 3.6 0.00012 33.2 -0.6 27 22-59 118-144 (343)
365 3tkl_A RAS-related protein RAB 44.8 5.6 0.00019 28.2 0.5 20 33-59 19-38 (196)
366 2z43_A DNA repair and recombin 44.7 2.3 7.9E-05 33.9 -1.8 34 14-58 94-128 (324)
367 1mh1_A RAC1; GTP-binding, GTPa 44.7 5.6 0.00019 27.8 0.5 19 33-58 8-26 (186)
368 3v9p_A DTMP kinase, thymidylat 44.5 4.7 0.00016 30.7 -0.0 18 32-49 27-44 (227)
369 1njg_A DNA polymerase III subu 44.2 6.4 0.00022 28.5 0.7 36 11-47 27-62 (250)
370 4edh_A DTMP kinase, thymidylat 44.1 4.9 0.00017 30.1 0.1 18 32-49 8-25 (213)
371 1ak2_A Adenylate kinase isoenz 43.9 3.9 0.00013 30.7 -0.5 16 32-47 18-33 (233)
372 4hlc_A DTMP kinase, thymidylat 43.8 4.9 0.00017 29.9 0.0 16 32-47 4-19 (205)
373 2gf9_A RAS-related protein RAB 43.7 5.9 0.0002 28.1 0.5 20 33-59 25-44 (189)
374 2r62_A Cell division protease 43.7 6.9 0.00024 29.6 0.9 12 33-44 47-58 (268)
375 1l8q_A Chromosomal replication 43.7 6.4 0.00022 30.9 0.7 21 33-60 40-60 (324)
376 1p5z_B DCK, deoxycytidine kina 43.7 5 0.00017 30.6 0.1 23 32-61 26-48 (263)
377 2bme_A RAB4A, RAS-related prot 43.7 5.1 0.00017 28.2 0.1 20 33-59 13-32 (186)
378 3kkq_A RAS-related protein M-R 43.6 6 0.0002 27.7 0.5 20 33-59 21-40 (183)
379 3t1o_A Gliding protein MGLA; G 43.5 7.2 0.00025 27.4 0.9 21 33-60 17-37 (198)
380 1zbd_A Rabphilin-3A; G protein 43.4 6.4 0.00022 28.2 0.6 20 33-59 11-30 (203)
381 1m7b_A RND3/RHOE small GTP-bin 43.3 5.2 0.00018 28.3 0.1 20 33-59 10-29 (184)
382 2h57_A ADP-ribosylation factor 43.3 5.1 0.00018 28.5 0.1 21 33-60 24-44 (190)
383 2il1_A RAB12; G-protein, GDP, 43.0 6.2 0.00021 28.2 0.5 20 33-59 29-48 (192)
384 4bas_A ADP-ribosylation factor 42.8 6.2 0.00021 28.0 0.4 21 33-60 20-40 (199)
385 2qu8_A Putative nucleolar GTP- 42.8 6.5 0.00022 29.1 0.6 20 33-59 32-51 (228)
386 2gf0_A GTP-binding protein DI- 42.7 5.3 0.00018 28.4 0.1 20 33-59 11-30 (199)
387 3bwd_D RAC-like GTP-binding pr 42.5 6.4 0.00022 27.4 0.5 20 33-59 11-30 (182)
388 1z06_A RAS-related protein RAB 42.2 6.4 0.00022 27.9 0.4 20 33-59 23-42 (189)
389 2xtp_A GTPase IMAP family memb 42.2 5.7 0.0002 30.1 0.2 21 32-59 24-44 (260)
390 2p65_A Hypothetical protein PF 42.1 5.4 0.00018 27.9 0.0 20 33-59 46-65 (187)
391 3oes_A GTPase rhebl1; small GT 42.1 5.5 0.00019 28.7 0.1 21 33-60 27-47 (201)
392 2a5j_A RAS-related protein RAB 42.1 6.5 0.00022 27.9 0.5 20 33-59 24-43 (191)
393 2atv_A RERG, RAS-like estrogen 42.0 6.5 0.00022 28.1 0.4 20 33-59 31-50 (196)
394 1zuh_A Shikimate kinase; alpha 41.9 7.8 0.00027 27.1 0.9 16 32-47 9-24 (168)
395 2q3h_A RAS homolog gene family 41.9 7 0.00024 27.9 0.6 20 33-59 23-42 (201)
396 1uj2_A Uridine-cytidine kinase 41.9 6.8 0.00023 29.7 0.6 18 32-49 24-41 (252)
397 1x3s_A RAS-related protein RAB 41.9 6.6 0.00022 27.7 0.5 20 33-59 18-37 (195)
398 3reg_A RHO-like small GTPase; 41.8 6.6 0.00023 28.0 0.5 20 33-59 26-45 (194)
399 3a1s_A Iron(II) transport prot 41.6 6.9 0.00024 30.0 0.6 20 33-59 8-27 (258)
400 2dby_A GTP-binding protein; GD 41.4 6.4 0.00022 32.2 0.4 15 33-47 4-18 (368)
401 1zd9_A ADP-ribosylation factor 41.4 6.7 0.00023 27.8 0.5 20 33-59 25-44 (188)
402 2fg5_A RAB-22B, RAS-related pr 41.4 5.7 0.0002 28.3 0.1 20 33-59 26-45 (192)
403 4djt_A GTP-binding nuclear pro 41.3 5.9 0.0002 28.8 0.1 20 33-59 14-33 (218)
404 3iby_A Ferrous iron transport 41.3 6.2 0.00021 30.3 0.2 21 33-60 4-24 (256)
405 3t5d_A Septin-7; GTP-binding p 41.1 5.9 0.0002 30.5 0.1 20 33-59 11-30 (274)
406 3dz8_A RAS-related protein RAB 40.8 6 0.0002 28.2 0.1 20 33-59 26-45 (191)
407 2f6r_A COA synthase, bifunctio 40.8 4.9 0.00017 31.3 -0.4 16 32-47 77-92 (281)
408 3h4m_A Proteasome-activating n 40.8 7.6 0.00026 29.7 0.7 21 33-60 54-74 (285)
409 3t5g_A GTP-binding protein RHE 40.7 6.3 0.00022 27.5 0.2 19 33-58 9-27 (181)
410 2p5s_A RAS and EF-hand domain 40.6 7.1 0.00024 28.0 0.5 20 33-59 31-50 (199)
411 1zj6_A ADP-ribosylation factor 40.6 6.4 0.00022 27.8 0.2 19 33-58 19-37 (187)
412 2fu5_C RAS-related protein RAB 40.4 6.1 0.00021 27.7 0.1 19 33-58 11-29 (183)
413 2o52_A RAS-related protein RAB 40.4 6.5 0.00022 28.3 0.2 20 33-59 28-47 (200)
414 2ew1_A RAS-related protein RAB 40.4 6.1 0.00021 28.8 0.1 20 33-59 29-48 (201)
415 3cph_A RAS-related protein SEC 40.2 7.2 0.00025 28.0 0.5 20 33-59 23-42 (213)
416 3c5c_A RAS-like protein 12; GD 40.0 7.3 0.00025 27.7 0.4 20 33-59 24-43 (187)
417 3n70_A Transport activator; si 39.9 11 0.00037 25.9 1.4 22 33-61 27-48 (145)
418 2bcg_Y Protein YP2, GTP-bindin 39.6 6.4 0.00022 28.3 0.1 20 33-59 11-30 (206)
419 2fh5_B SR-beta, signal recogni 39.5 7.5 0.00026 28.1 0.5 20 33-59 10-29 (214)
420 2chg_A Replication factor C sm 39.3 8.9 0.00031 27.4 0.9 15 33-47 41-55 (226)
421 2wsm_A Hydrogenase expression/ 39.1 6.5 0.00022 28.7 0.0 15 33-47 33-47 (221)
422 2f7s_A C25KG, RAS-related prot 39.1 8.2 0.00028 28.0 0.6 20 33-59 28-47 (217)
423 2iwr_A Centaurin gamma 1; ANK 39.1 5.3 0.00018 27.9 -0.4 20 33-59 10-29 (178)
424 2qz4_A Paraplegin; AAA+, SPG7, 38.9 8.6 0.00029 28.8 0.7 11 34-44 43-53 (262)
425 2h17_A ADP-ribosylation factor 38.6 6.1 0.00021 27.8 -0.2 20 33-59 24-43 (181)
426 2g3y_A GTP-binding protein GEM 38.3 7.6 0.00026 28.8 0.3 20 33-59 40-59 (211)
427 1ko7_A HPR kinase/phosphatase; 38.2 3.6 0.00012 33.1 -1.6 30 14-48 133-162 (314)
428 1jwy_B Dynamin A GTPase domain 38.1 7.2 0.00025 30.3 0.2 22 32-60 26-47 (315)
429 2j1l_A RHO-related GTP-binding 38.0 7.4 0.00025 28.4 0.2 20 33-59 37-56 (214)
430 2z4s_A Chromosomal replication 37.7 8.9 0.0003 31.9 0.7 20 33-59 133-152 (440)
431 3i8s_A Ferrous iron transport 37.3 7.7 0.00026 30.0 0.2 21 33-60 6-26 (274)
432 2fv8_A H6, RHO-related GTP-bin 37.1 7.3 0.00025 28.2 0.1 20 33-59 28-47 (207)
433 3gmt_A Adenylate kinase; ssgci 37.1 8.9 0.0003 29.4 0.5 15 33-47 11-25 (230)
434 2yc2_C IFT27, small RAB-relate 37.0 5.8 0.0002 28.3 -0.5 19 33-58 23-41 (208)
435 3d3q_A TRNA delta(2)-isopenten 37.0 9 0.00031 31.1 0.6 16 32-47 9-24 (340)
436 1gwn_A RHO-related GTP-binding 36.9 7.5 0.00026 28.4 0.1 21 33-60 31-51 (205)
437 2b6h_A ADP-ribosylation factor 36.9 7.4 0.00025 27.9 0.1 20 33-59 32-51 (192)
438 1sky_E F1-ATPase, F1-ATP synth 36.7 4.1 0.00014 34.8 -1.6 27 22-59 147-173 (473)
439 2ocp_A DGK, deoxyguanosine kin 36.7 6.4 0.00022 29.5 -0.3 16 32-47 4-19 (241)
440 2h92_A Cytidylate kinase; ross 36.4 5.8 0.0002 29.1 -0.6 16 32-47 5-20 (219)
441 3th5_A RAS-related C3 botulinu 42.7 7.4 0.00025 28.0 0.0 20 32-58 32-51 (204)
442 4tmk_A Protein (thymidylate ki 36.4 6.5 0.00022 29.5 -0.3 18 32-49 5-22 (213)
443 2grj_A Dephospho-COA kinase; T 36.4 9.5 0.00032 28.0 0.6 16 32-47 14-29 (192)
444 2atx_A Small GTP binding prote 36.3 7.7 0.00026 27.5 0.1 20 33-59 21-40 (194)
445 1g5t_A COB(I)alamin adenosyltr 36.1 29 0.001 25.8 3.3 24 147-170 106-131 (196)
446 1u94_A RECA protein, recombina 36.0 4.4 0.00015 33.1 -1.5 18 23-44 60-77 (356)
447 1ypw_A Transitional endoplasmi 35.7 6.5 0.00022 35.6 -0.5 30 20-60 505-534 (806)
448 3cnl_A YLQF, putative uncharac 35.5 9.7 0.00033 29.4 0.5 22 33-61 102-123 (262)
449 3pvs_A Replication-associated 35.4 11 0.00039 31.5 1.0 38 17-63 39-76 (447)
450 3l0i_B RAS-related protein RAB 35.4 6.8 0.00023 28.1 -0.4 20 33-59 36-55 (199)
451 2gco_A H9, RHO-related GTP-bin 35.2 8.3 0.00028 27.7 0.1 20 33-59 28-47 (201)
452 3crm_A TRNA delta(2)-isopenten 35.2 10 0.00036 30.5 0.7 15 32-46 7-21 (323)
453 2hf9_A Probable hydrogenase ni 35.0 8.4 0.00029 28.2 0.1 19 33-58 41-59 (226)
454 4dcu_A GTP-binding protein ENG 35.0 8.2 0.00028 32.2 0.0 21 32-59 25-45 (456)
455 2aka_B Dynamin-1; fusion prote 34.6 8.6 0.0003 29.5 0.1 21 33-60 29-49 (299)
456 1h65_A Chloroplast outer envel 34.6 9.1 0.00031 29.3 0.2 20 33-59 42-61 (270)
457 3llu_A RAS-related GTP-binding 34.6 9.1 0.00031 27.4 0.2 20 33-59 23-42 (196)
458 2r8r_A Sensor protein; KDPD, P 34.5 19 0.00063 27.6 2.0 17 154-170 79-95 (228)
459 3q3j_B RHO-related GTP-binding 34.3 10 0.00035 27.7 0.5 20 33-59 30-49 (214)
460 4dhe_A Probable GTP-binding pr 34.3 4.2 0.00014 29.7 -1.7 21 33-60 32-52 (223)
461 3def_A T7I23.11 protein; chlor 33.8 9.5 0.00032 29.1 0.2 21 33-60 39-59 (262)
462 3exa_A TRNA delta(2)-isopenten 33.7 11 0.00037 30.5 0.5 15 33-47 6-20 (322)
463 2v1u_A Cell division control p 33.6 12 0.00039 29.6 0.7 21 32-59 46-66 (387)
464 3ld9_A DTMP kinase, thymidylat 33.6 9.1 0.00031 29.0 0.1 18 32-49 23-40 (223)
465 3tmk_A Thymidylate kinase; pho 33.4 7.6 0.00026 29.3 -0.4 17 32-48 7-23 (216)
466 2qmh_A HPR kinase/phosphorylas 33.2 15 0.0005 27.8 1.2 29 14-47 23-51 (205)
467 3cpj_B GTP-binding protein YPT 33.2 11 0.00037 27.6 0.5 20 33-59 16-35 (223)
468 3zvl_A Bifunctional polynucleo 32.8 13 0.00045 30.7 0.9 20 32-58 260-279 (416)
469 2x77_A ADP-ribosylation factor 32.6 8.1 0.00028 27.3 -0.3 19 33-58 25-43 (189)
470 2hup_A RAS-related protein RAB 32.5 9.6 0.00033 27.5 0.1 20 33-59 32-51 (201)
471 1d2n_A N-ethylmaleimide-sensit 32.2 13 0.00046 28.2 0.9 12 34-45 68-79 (272)
472 2i1q_A DNA repair and recombin 31.9 7.2 0.00024 30.8 -0.8 27 14-44 85-112 (322)
473 2j0v_A RAC-like GTP-binding pr 31.8 10 0.00035 27.3 0.1 19 33-58 12-30 (212)
474 4gzl_A RAS-related C3 botulinu 31.4 10 0.00036 27.4 0.1 19 33-58 33-51 (204)
475 1ofh_A ATP-dependent HSL prote 31.4 14 0.00048 28.3 0.8 15 33-47 53-67 (310)
476 3t15_A Ribulose bisphosphate c 31.4 11 0.00039 29.3 0.3 17 35-58 41-57 (293)
477 3co5_A Putative two-component 30.9 11 0.00038 25.8 0.2 22 33-61 30-51 (143)
478 3a8t_A Adenylate isopentenyltr 30.6 15 0.00051 29.9 0.9 13 32-44 42-54 (339)
479 2v3c_C SRP54, signal recogniti 30.2 15 0.00051 30.7 0.8 16 32-47 101-116 (432)
480 3foz_A TRNA delta(2)-isopenten 30.1 15 0.00051 29.6 0.8 15 33-47 13-27 (316)
481 1xwi_A SKD1 protein; VPS4B, AA 29.8 14 0.00049 29.2 0.7 20 33-59 48-67 (322)
482 3gj0_A GTP-binding nuclear pro 29.8 11 0.00038 27.4 0.0 22 149-170 166-187 (221)
483 3syl_A Protein CBBX; photosynt 29.8 13 0.00043 28.7 0.3 15 33-47 70-84 (309)
484 2qgz_A Helicase loader, putati 29.7 16 0.00053 28.9 0.9 18 34-58 156-173 (308)
485 3pxg_A Negative regulator of g 29.2 17 0.00057 30.5 1.0 14 34-47 205-218 (468)
486 1w5s_A Origin recognition comp 28.5 16 0.00055 29.2 0.8 12 36-47 58-69 (412)
487 2hjg_A GTP-binding protein ENG 28.3 13 0.00043 30.8 0.1 20 33-59 6-25 (436)
488 3eie_A Vacuolar protein sortin 28.0 16 0.00055 28.7 0.7 19 33-58 54-72 (322)
489 4b4t_M 26S protease regulatory 27.8 17 0.00057 30.6 0.7 20 33-59 218-237 (434)
490 3hws_A ATP-dependent CLP prote 27.8 17 0.0006 29.0 0.8 13 33-45 54-66 (363)
491 3pfi_A Holliday junction ATP-d 26.9 18 0.00062 28.3 0.8 12 33-44 58-69 (338)
492 1hqc_A RUVB; extended AAA-ATPa 26.8 20 0.00069 27.7 1.0 15 33-47 41-55 (324)
493 4b4t_L 26S protease subunit RP 26.3 18 0.00063 30.3 0.7 20 33-59 218-237 (437)
494 2bjv_A PSP operon transcriptio 26.3 23 0.00079 26.6 1.3 22 32-60 31-52 (265)
495 3tqf_A HPR(Ser) kinase; transf 26.3 17 0.00057 26.9 0.4 17 32-48 18-34 (181)
496 4b4t_K 26S protease regulatory 26.1 18 0.00063 30.2 0.7 20 33-59 209-228 (428)
497 1puj_A YLQF, conserved hypothe 26.0 16 0.00054 28.5 0.2 21 33-60 123-143 (282)
498 3uk6_A RUVB-like 2; hexameric 25.9 17 0.00056 28.8 0.4 21 33-60 73-93 (368)
499 1um8_A ATP-dependent CLP prote 25.8 20 0.00068 28.7 0.8 13 33-45 75-87 (376)
500 3d8b_A Fidgetin-like protein 1 25.6 20 0.00067 28.8 0.8 19 34-59 121-139 (357)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2e-45 Score=307.48 Aligned_cols=163 Identities=16% Similarity=0.130 Sum_probs=145.0
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL----- 78 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~----- 78 (178)
+.|..+.+..++|+||||+|++|| +.+|+|+|||||| ||+++++|+.+|++|+|.++|+++...
T Consensus 32 ~~y~~~~~~~~aL~~vsl~i~~Ge----i~~IiGpnGaGKS-------TLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 32 KVFHQGTRTIQALNNVSLHVPAGQ----IYGVIGASGAGKS-------TLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp EEEECSSSEEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred EEeCCCCCCeEEEEeeEEEEcCCC----EEEEEcCCCchHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 345443334579999999999999 8889999999999 999999999999999999999988642
Q ss_pred HhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC
Q psy860 79 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 79 ~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~ 158 (178)
.+.|++||||||++.+++.+||+||+.++....+.+..+.++++.++++.+||.+..++++.+|||||||||+|||||++
T Consensus 101 ~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 101 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 34577899999999999999999999998777666555667789999999999999999999999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~ 177 (178)
+|++||||||||||||.++
T Consensus 181 ~P~lLLlDEPTs~LD~~~~ 199 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATT 199 (366)
T ss_dssp CCSEEEEESTTTTSCHHHH
T ss_pred CCCEEEEECCCccCCHHHH
Confidence 9999999999999999753
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3e-45 Score=306.01 Aligned_cols=157 Identities=22% Similarity=0.200 Sum_probs=141.2
Q ss_pred cCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc----ccHHhhccce
Q psy860 10 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI----MHLFQYLSGI 85 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~----~~~~~~~~~i 85 (178)
+|..++|+||||+|++|| +.+|+|||||||| ||++++.|+.+|++|+|.++|+++ ......++.|
T Consensus 14 y~~~~~L~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGE----ILFIIGASGCGKT-------TLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp ETTEEEEEEEEEEECTTC----EEEEEESTTSSHH-------HHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred ECCEEEEEeeEEEEcCCC----EEEEECCCCchHH-------HHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 355689999999999999 8899999999999 999999999999999999999988 3334456789
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
|||||++.+++++||+||+.++....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLL 162 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999999876555555555667899999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCC
Q psy860 166 KLPFSSQNLYNT 177 (178)
Q Consensus 166 DEPt~gLD~~~~ 177 (178)
|||||+||+..+
T Consensus 163 DEPts~LD~~~r 174 (359)
T 3fvq_A 163 DEPFSALDEQLR 174 (359)
T ss_dssp ESTTTTSCHHHH
T ss_pred eCCcccCCHHHH
Confidence 999999998753
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7.4e-45 Score=305.62 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=143.8
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++......+++||||||
T Consensus 14 g~~~~L~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 14 GEVVVSKDINLDIHEGE----FVVFVGPSGCGKS-------TLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred CCEEEEeeeEEEECCCC----EEEEEcCCCchHH-------HHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 55689999999999999 8889999999999 999999999999999999999998766555678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++++||+||+.++....+.++.+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 99999999999999998777766655667789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||+..+
T Consensus 163 ~LD~~~~ 169 (381)
T 3rlf_A 163 NLDAALR 169 (381)
T ss_dssp TSCHHHH
T ss_pred CCCHHHH
Confidence 9998653
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2e-44 Score=285.85 Aligned_cols=163 Identities=17% Similarity=0.140 Sum_probs=137.0
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL----- 78 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~----- 78 (178)
|.|..+....++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++...
T Consensus 9 ~~y~~~~~~~~~L~~isl~i~~Ge----~~~iiG~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 9 KTYKMGEEIIYALKNVNLNIKEGE----FVSIMGPSGSGKS-------TMLNIIGCLDKPTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp EEEEETTEEEEEEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHH
T ss_pred EEeCCCCcceeeEEeeeEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCceEEEECCEEcccCCHHHH
Confidence 345433223469999999999999 8889999999999 999999999999999999999987542
Q ss_pred Hhh-ccceEEecCCCCCCCCCCHHHHHHHHHHhc---CCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHH
Q psy860 79 FQY-LSGIGYCPQFNGINEHLTAQEMLECFSALR---GIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTA 153 (178)
Q Consensus 79 ~~~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IA 153 (178)
.+. ++.||||||++.+++.+||+||+.+..... .....+..+++.++++.+++.+. .++++.+|||||||||+||
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 122 346999999999999999999999866543 22223345678889999999875 5999999999999999999
Q ss_pred HHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 154 MALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 154 raL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|||+++|++|||||||+|||+.++
T Consensus 158 ral~~~p~llllDEPts~LD~~~~ 181 (235)
T 3tif_A 158 RALANNPPIILADQPTWALDSKTG 181 (235)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHH
T ss_pred HHHHcCCCEEEEeCCcccCCHHHH
Confidence 999999999999999999998753
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.2e-44 Score=290.74 Aligned_cols=153 Identities=14% Similarity=0.097 Sum_probs=136.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--c--HHhhccceEEec
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--H--LFQYLSGIGYCP 89 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~--~~~~~~~ig~v~ 89 (178)
++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++. . ..++++.|||||
T Consensus 22 ~~L~~isl~i~~Ge----~~~iiGpnGsGKS-------TLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~ 90 (275)
T 3gfo_A 22 HALKGINMNIKRGE----VTAILGGNGVGKS-------TLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVF 90 (275)
T ss_dssp EEEEEEEEEEETTS----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEEC
T ss_pred eEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEE
Confidence 59999999999999 8889999999999 9999999999999999999999873 2 345678899999
Q ss_pred CCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 90 QFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 90 Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
|++. .++.+||+||+.+.....+.+..+..++++++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 91 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 91 QDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp SSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred cCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 9973 445799999999987666555555567899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+||||.++
T Consensus 171 ts~LD~~~~ 179 (275)
T 3gfo_A 171 TAGLDPMGV 179 (275)
T ss_dssp TTTCCHHHH
T ss_pred cccCCHHHH
Confidence 999999753
No 6
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=5.1e-44 Score=298.43 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=141.0
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus 26 g~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 94 (355)
T 1z47_A 26 GGARSVRGVSFQIREGE----MVGLLGPSGSGKT-------TILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQ 94 (355)
T ss_dssp TSTTCEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECG
T ss_pred CCCEEEeeeEEEECCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEec
Confidence 44579999999999999 8889999999999 999999999999999999999988665455678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++++||+||+.++....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99999999999999997766554444456788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||+..+
T Consensus 175 ~LD~~~r 181 (355)
T 1z47_A 175 AIDTQIR 181 (355)
T ss_dssp CSSHHHH
T ss_pred cCCHHHH
Confidence 9998754
No 7
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.4e-44 Score=297.61 Aligned_cols=156 Identities=19% Similarity=0.200 Sum_probs=140.6
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus 14 ~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 14 GNFTALNNINLKIKDGE----FMALLGPSGSGKS-------TLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp SSSEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred CCEEEEEeeEEEECCCC----EEEEECCCCchHH-------HHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 44579999999999999 8889999999999 999999999999999999999988654444578999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++++||+||+.+.....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 99999999999999997666554444456678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||+..+
T Consensus 163 ~LD~~~r 169 (362)
T 2it1_A 163 NLDALLR 169 (362)
T ss_dssp GSCHHHH
T ss_pred cCCHHHH
Confidence 9998754
No 8
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.9e-43 Score=278.37 Aligned_cols=154 Identities=21% Similarity=0.182 Sum_probs=135.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH-----Hhhc-cceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL-----FQYL-SGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~-----~~~~-~~ig 86 (178)
.++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++... .+++ +.++
T Consensus 17 ~~~l~~vsl~i~~Ge----~~~iiG~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 85 (224)
T 2pcj_A 17 YEILKGISLSVKKGE----FVSIIGASGSGKS-------TLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLG 85 (224)
T ss_dssp EEEEEEEEEEEETTC----EEEEEECTTSCHH-------HHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEE
T ss_pred EeeEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEE
Confidence 579999999999999 8889999999999 999999999999999999999887532 1233 6799
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|+||++.+++.+||+||+.++....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+++|+++|||
T Consensus 86 ~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 165 (224)
T 2pcj_A 86 FVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFAD 165 (224)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEE
T ss_pred EEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999998765544332334567889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q psy860 167 LPFSSQNLYNT 177 (178)
Q Consensus 167 EPt~gLD~~~~ 177 (178)
|||+|||+.++
T Consensus 166 EPt~~LD~~~~ 176 (224)
T 2pcj_A 166 EPTGNLDSANT 176 (224)
T ss_dssp STTTTCCHHHH
T ss_pred CCCCCCCHHHH
Confidence 99999998753
No 9
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=7e-44 Score=298.08 Aligned_cols=156 Identities=17% Similarity=0.111 Sum_probs=138.5
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus 14 ~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 14 GKVKAVDGVSFEVKDGE----FVALLGPSGCGKT-------TTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp TTEEEEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred CCEEEEeeeEEEEcCCC----EEEEEcCCCchHH-------HHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 44579999999999999 8889999999999 999999999999999999999988665444678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++++||+||+.+.....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s 162 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 99999999999999986544333333345678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||+..+
T Consensus 163 ~LD~~~r 169 (359)
T 2yyz_A 163 NLDANLR 169 (359)
T ss_dssp TSCHHHH
T ss_pred cCCHHHH
Confidence 9998754
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.7e-43 Score=297.10 Aligned_cols=156 Identities=18% Similarity=0.169 Sum_probs=140.0
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhccc
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYLSG 84 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~~~ 84 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.. ....++.
T Consensus 14 ~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGE----FMILLGPSGCGKT-------TTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp TTEEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred CCEEEEeeeEEEEcCCC----EEEEECCCCcHHH-------HHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 34579999999999999 8889999999999 99999999999999999999998765 3334578
Q ss_pred eEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 85 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 85 ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
||||||++.+++++||+||+.++....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999998766555444456678999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
||||||+||+..+
T Consensus 163 LDEP~s~LD~~~r 175 (372)
T 1g29_1 163 MDEPLSNLDAKLR 175 (372)
T ss_dssp EECTTTTSCHHHH
T ss_pred ECCCCccCCHHHH
Confidence 9999999998754
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.5e-43 Score=283.86 Aligned_cols=156 Identities=20% Similarity=0.204 Sum_probs=136.5
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc----cHHhhccceE
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM----HLFQYLSGIG 86 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~----~~~~~~~~ig 86 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++. ...++++.|+
T Consensus 35 ~~~~vL~~vsl~i~~Ge----i~~liG~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 35 GSLEVLKGINVHIREGE----VVVVIGPSGSGKS-------TFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred CCEEEEEeeEEEEcCCC----EEEEEcCCCCcHH-------HHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 33579999999999999 8889999999999 9999999999999999999998874 2344567899
Q ss_pred EecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 87 YCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
||||++.+++.+||+||+.++. ...+.+..+..++++++++.+++.+..++++.+|||||||||+|||||+.+|++|||
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999999999999998854 333333233456788999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCC
Q psy860 166 KLPFSSQNLYNT 177 (178)
Q Consensus 166 DEPt~gLD~~~~ 177 (178)
||||+|||+.++
T Consensus 184 DEPts~LD~~~~ 195 (263)
T 2olj_A 184 DEPTSALDPEMV 195 (263)
T ss_dssp ESTTTTSCHHHH
T ss_pred eCCcccCCHHHH
Confidence 999999998754
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.1e-44 Score=297.03 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=139.2
Q ss_pred Cccc--cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-----HHhhcc
Q psy860 11 GYCP--QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-----LFQYLS 83 (178)
Q Consensus 11 ~~~~--~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-----~~~~~~ 83 (178)
|..+ +|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.. ....++
T Consensus 14 ~~~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 14 KKGKVVALDNVNINIENGE----RFGILGPSGAGKT-------TFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp GGGTEEEEEEEEEEECTTC----EEEEECSCHHHHH-------HHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred CCEeeeeEeceEEEECCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 3346 9999999999999 8889999999999 99999999999999999999998865 444567
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
.||||||++.+++++||+||+.++....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 89999999999999999999988654444433344567899999999999999999999999999999999999999999
Q ss_pred EeeCCCCCCCCCCC
Q psy860 164 FQKLPFSSQNLYNT 177 (178)
Q Consensus 164 llDEPt~gLD~~~~ 177 (178)
|||||||+||+..+
T Consensus 163 LLDEP~s~LD~~~r 176 (353)
T 1oxx_K 163 LLDEPFSNLDARMR 176 (353)
T ss_dssp EEESTTTTSCGGGH
T ss_pred EEECCcccCCHHHH
Confidence 99999999999764
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-43 Score=283.68 Aligned_cols=156 Identities=17% Similarity=0.119 Sum_probs=136.1
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-------------
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------------- 77 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------------- 77 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++..
T Consensus 17 ~~~~vl~~vsl~i~~Ge----~~~liG~nGsGKS-------TLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGD----VISIIGSSGSGKS-------TFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred CCEEEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 34579999999999999 8889999999999 99999999999999999999988741
Q ss_pred --HHhhccceEEecCCCCCCCCCCHHHHHHHHH-HhcCCCCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHH
Q psy860 78 --LFQYLSGIGYCPQFNGINEHLTAQEMLECFS-ALRGIPGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTA 153 (178)
Q Consensus 78 --~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IA 153 (178)
..++++.+|||||++.+++.+||+||+.++. ...+.+..+.++++.++++.+++.+. .++++.+|||||||||+||
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 1345678999999999999999999998854 33333323345678899999999988 9999999999999999999
Q ss_pred HHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 154 MALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 154 raL~~~P~~lllDEPt~gLD~~~~ 177 (178)
|||+.+|++|||||||+|||+.++
T Consensus 166 raL~~~p~lllLDEPts~LD~~~~ 189 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDPELV 189 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCHHHH
T ss_pred HHHhcCCCEEEEeCCCccCCHHHH
Confidence 999999999999999999998753
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.8e-43 Score=280.38 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=137.6
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~ 89 (178)
|..++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.. ..++++.|||+|
T Consensus 26 ~~~~vl~~vsl~i~~Ge----i~~l~G~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~ 94 (256)
T 1vpl_A 26 GKKEILKGISFEIEEGE----IFGLIGPNGAGKT-------TTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 94 (256)
T ss_dssp TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CCEEEEEeeEEEEcCCc----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence 33579999999999999 8889999999999 99999999999999999999988753 345667899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|++.+++.+||+||+.++....+.+..+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999999999999998765544332233467889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 175 s~LD~~~~ 182 (256)
T 1vpl_A 175 SGLDVLNA 182 (256)
T ss_dssp TTCCHHHH
T ss_pred cccCHHHH
Confidence 99998753
No 15
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.5e-43 Score=297.36 Aligned_cols=156 Identities=18% Similarity=0.185 Sum_probs=131.9
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus 22 ~~~~vl~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 22 GNFTAVNKLNLTIKDGE----FLVLLGPSGCGKT-------TTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp TTEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred CCEEEEeeeEEEECCCC----EEEEECCCCChHH-------HHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 34579999999999999 8889999999999 999999999999999999999988654444678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++++||+||+.|+....+.+..+.+++++++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 99999999999999886443333333445678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||+..+
T Consensus 171 ~LD~~~r 177 (372)
T 1v43_A 171 NLDAKLR 177 (372)
T ss_dssp TSCHHHH
T ss_pred cCCHHHH
Confidence 9998754
No 16
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=5.8e-42 Score=268.37 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=133.4
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++. +.++.++|+||++.
T Consensus 23 ~il~~vsl~i~~Ge----~~~iiG~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~~~---~~~~~i~~v~q~~~ 88 (214)
T 1sgw_A 23 PVLERITMTIEKGN----VVNFHGPNGIGKT-------TLLKTISTYLKPLKGEIIYNGVPIT---KVKGKIFFLPEEII 88 (214)
T ss_dssp EEEEEEEEEEETTC----CEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTEEGG---GGGGGEEEECSSCC
T ss_pred eEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCeEEEECCEEhh---hhcCcEEEEeCCCc
Confidence 79999999999999 8889999999999 9999999999999999999998875 35678999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN 173 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD 173 (178)
+++.+||+||+.++....+. ..+ .+++.++++.+++.+. ++++.+|||||||||+|||||+.+|+++||||||+|||
T Consensus 89 ~~~~~tv~enl~~~~~~~~~-~~~-~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD 165 (214)
T 1sgw_A 89 VPRKISVEDYLKAVASLYGV-KVN-KNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165 (214)
T ss_dssp CCTTSBHHHHHHHHHHHTTC-CCC-HHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSC
T ss_pred CCCCCCHHHHHHHHHHhcCC-chH-HHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCC
Confidence 99999999999987554433 233 6678999999999988 99999999999999999999999999999999999999
Q ss_pred CCCC
Q psy860 174 LYNT 177 (178)
Q Consensus 174 ~~~~ 177 (178)
+.++
T Consensus 166 ~~~~ 169 (214)
T 1sgw_A 166 EDSK 169 (214)
T ss_dssp TTTH
T ss_pred HHHH
Confidence 9874
No 17
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=6.5e-43 Score=291.23 Aligned_cols=152 Identities=15% Similarity=0.130 Sum_probs=137.2
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|.. +|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++......++.||||||
T Consensus 12 ~~~-~l~~vsl~i~~Ge----~~~llGpnGsGKS-------TLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 12 KNF-SLDNLSLKVESGE----YFVILGPTGAGKT-------LFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp SSC-EEEEEEEEECTTC----EEEEECCCTHHHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CCE-EEeeeEEEEcCCC----EEEEECCCCccHH-------HHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 435 9999999999999 8889999999999 999999999999999999999988665445678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
++.+++++||+||+.+.....+.+. . +++.++++.++|.+..++++.+|||||||||+|||||+.+|++||||||||
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s 156 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999999999998765544322 2 778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
+||+..+
T Consensus 157 ~LD~~~~ 163 (348)
T 3d31_A 157 ALDPRTQ 163 (348)
T ss_dssp TSCHHHH
T ss_pred cCCHHHH
Confidence 9998754
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6.5e-43 Score=280.43 Aligned_cols=156 Identities=15% Similarity=0.098 Sum_probs=134.9
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEE
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGY 87 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~ 87 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++... ...+++++|
T Consensus 18 ~~~~vl~~vsl~i~~Ge----~~~liG~nGsGKS-------TLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGD----VTLIIGPNGSGKS-------TLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp TTEEEEEEECCEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred CCEeeEeeeEEEEeCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 33579999999999999 8889999999999 999999999999999999999987542 234668999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHh--cC-----------CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHH
Q psy860 88 CPQFNGINEHLTAQEMLECFSAL--RG-----------IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAM 154 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAr 154 (178)
+||++.+++.+||.||+.++... .+ ....+.++++.++++.+++.+..++++.+|||||||||+|||
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence 99999999999999999875322 11 122233467889999999999999999999999999999999
Q ss_pred HHhCCCCeEEeeCCCCCCCCCCC
Q psy860 155 ALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 155 aL~~~P~~lllDEPt~gLD~~~~ 177 (178)
||+.+|++|||||||+|||+.++
T Consensus 167 aL~~~p~lllLDEPts~LD~~~~ 189 (257)
T 1g6h_A 167 ALMTNPKMIVMDEPIAGVAPGLA 189 (257)
T ss_dssp HHHTCCSEEEEESTTTTCCHHHH
T ss_pred HHHcCCCEEEEeCCccCCCHHHH
Confidence 99999999999999999998753
No 19
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.4e-42 Score=277.69 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=137.5
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEe
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYC 88 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v 88 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.. ..+.++.++|+
T Consensus 22 ~~~~vL~~vsl~i~~Ge----~~~liG~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 22 QQQALINDVSLHIASGE----MVAIIGPNGAGKS-------TLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp TTEEEEEEEEEEEETTC----EEEEECCTTSCHH-------HHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred CCeeEEEeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 44679999999999999 8889999999999 99999999999999999999998864 34566779999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhC------CCCe
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIG------DRDD 162 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~------~P~~ 162 (178)
||++.+++.+||+||+.+..... ...+.+++++++++.+++.+..++++.+|||||||||+|||||++ +|++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l 168 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW 168 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 99999888999999998754332 334556789999999999999999999999999999999999999 9999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
|||||||+|||+.++
T Consensus 169 LllDEPts~LD~~~~ 183 (266)
T 4g1u_C 169 LFLDEPTSALDLYHQ 183 (266)
T ss_dssp EEECCCCSSCCHHHH
T ss_pred EEEeCccccCCHHHH
Confidence 999999999998753
No 20
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.9e-42 Score=271.98 Aligned_cols=153 Identities=18% Similarity=0.136 Sum_probs=132.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHh-hccceEEec
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQ-YLSGIGYCP 89 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~-~~~~ig~v~ 89 (178)
.++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++.. ..+ .+++++|+|
T Consensus 19 ~~vl~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 87 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQ----IVTLIGANGAGKT-------TTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVP 87 (240)
T ss_dssp EEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEEC
T ss_pred eeEEeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEe
Confidence 579999999999999 8889999999999 99999999999999999999998754 222 345699999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcC-CCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG-LTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
|++.+++.+||+||+.++.. ......+..++++++++.++ +.+..++++.+|||||||||+|||||+++|++||||||
T Consensus 88 q~~~l~~~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 166 (240)
T 1ji0_A 88 EGRRIFPELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEP 166 (240)
T ss_dssp SSCCCCTTSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred cCCccCCCCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 99999999999999987531 12223334567888999995 98888999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 167 ts~LD~~~~ 175 (240)
T 1ji0_A 167 SLGLAPILV 175 (240)
T ss_dssp TTTCCHHHH
T ss_pred cccCCHHHH
Confidence 999998753
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-41 Score=274.00 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=134.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++... ++++.+||+||++
T Consensus 20 ~~vl~~vsl~i~~Ge----~~~liG~nGsGKS-------TLl~~i~Gl~~p~~G~I~~~g~~~~~~-~~~~~i~~v~q~~ 87 (266)
T 2yz2_A 20 KKALENVSLVINEGE----CLLVAGNTGSGKS-------TLLQIVAGLIEPTSGDVLYDGERKKGY-EIRRNIGIAFQYP 87 (266)
T ss_dssp EEEEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEECCHH-HHGGGEEEECSSG
T ss_pred cceeeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCcEEEECCEECchH-HhhhhEEEEeccc
Confidence 469999999999999 8889999999999 999999999999999999999887654 6677899999996
Q ss_pred -CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC--ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 93 -GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT--EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 93 -~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~--~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
.+++.+||+||+.++.... .+..+.++++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||
T Consensus 88 ~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 166 (266)
T 2yz2_A 88 EDQFFAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPL 166 (266)
T ss_dssp GGGCCCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred hhhcCCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCcc
Confidence 4667899999998754322 33344567789999999999 8999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q psy860 170 SSQNLYNT 177 (178)
Q Consensus 170 ~gLD~~~~ 177 (178)
+|||+.++
T Consensus 167 s~LD~~~~ 174 (266)
T 2yz2_A 167 VGLDREGK 174 (266)
T ss_dssp TTCCHHHH
T ss_pred ccCCHHHH
Confidence 99998653
No 22
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-42 Score=274.80 Aligned_cols=149 Identities=19% Similarity=0.188 Sum_probs=131.4
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
+|+||||+|++ | +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++......++.|||+||++.+
T Consensus 14 ~l~~isl~i~~-e----~~~liG~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l 81 (240)
T 2onk_A 14 FRLNVDFEMGR-D----YCVLLGPTGAGKS-------VFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYAL 81 (240)
T ss_dssp EEEEEEEEECS-S----EEEEECCTTSSHH-------HHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCC
T ss_pred EEeeeEEEECC-E----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCcc
Confidence 59999999999 9 8889999999999 9999999999999999999998876544456789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
++.+||+||+.++....+. ...+++++++++.+++.+..++++.+|||||||||+|||||+++|+++||||||+|||+
T Consensus 82 ~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~ 159 (240)
T 2onk_A 82 FPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDL 159 (240)
T ss_dssp CTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCH
T ss_pred CCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 9999999999875322211 11246788999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy860 175 YNT 177 (178)
Q Consensus 175 ~~~ 177 (178)
.++
T Consensus 160 ~~~ 162 (240)
T 2onk_A 160 KTK 162 (240)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.6e-41 Score=274.17 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=130.3
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc--c--HHhhccceEE
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM--H--LFQYLSGIGY 87 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~--~--~~~~~~~ig~ 87 (178)
..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++. . ..++++.|+|
T Consensus 33 ~~~vL~~isl~i~~Ge----~~~liG~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~ 101 (279)
T 2ihy_A 33 GKTILKKISWQIAKGD----KWILYGLNGAGKT-------TLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGF 101 (279)
T ss_dssp TEEEEEEEEEEEETTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEE
T ss_pred CEEEEEeeeEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEE
Confidence 3579999999999999 8889999999999 9999999999999999999998875 2 3456778999
Q ss_pred ecCCCCC--CCCCCHHHHHHHHHH----hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 88 CPQFNGI--NEHLTAQEMLECFSA----LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 88 v~Q~~~l--~~~ltv~e~l~~~~~----~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+||++.+ .+.+||+||+.+... ..+....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|+
T Consensus 102 v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 181 (279)
T 2ihy_A 102 VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQ 181 (279)
T ss_dssp ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCS
T ss_pred EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 9998753 345699999986321 1111122334578899999999999999999999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
+|||||||+|||+.++
T Consensus 182 lLlLDEPts~LD~~~~ 197 (279)
T 2ihy_A 182 VLILDEPAAGLDFIAR 197 (279)
T ss_dssp EEEEESTTTTCCHHHH
T ss_pred EEEEeCCccccCHHHH
Confidence 9999999999998754
No 24
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=4e-40 Score=263.26 Aligned_cols=154 Identities=18% Similarity=0.092 Sum_probs=126.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccH--Hh-hccceEE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHL--FQ-YLSGIGY 87 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~--~~-~~~~ig~ 87 (178)
.++|+||||+|++|| +.+|+|+|||||| ||++.+.|+ .+|++|+|.++|.++... .+ .+++++|
T Consensus 16 ~~vl~~vsl~i~~Ge----~~~l~G~nGsGKS-------TLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~ 84 (250)
T 2d2e_A 16 ETILKGVNLVVPKGE----VHALMGPNGAGKS-------TLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFL 84 (250)
T ss_dssp EEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCC
T ss_pred EEEEeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEE
Confidence 579999999999999 8889999999999 999999998 789999999999987542 22 2456999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHH-hcCC--CCCChhHHHHHHHHHcCC-CccccCcCCC-CChHHHHHHHHHHHHhCCCCe
Q psy860 88 CPQFNGINEHLTAQEMLECFSA-LRGI--PGVKSGPIIDYWIDLLGL-TEYRHRVSGR-YSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~-~~~~--~~~~~~~~~~~~l~~~~L-~~~~~~~~~~-LSgGqkQRv~IAraL~~~P~~ 162 (178)
+||++.+++.+||+||+.+... ..+. ...+..+++.++++.+++ .+..++++.+ |||||||||+|||||+++|++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~l 164 (250)
T 2d2e_A 85 AFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTY 164 (250)
T ss_dssp CCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSE
T ss_pred eccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999999999987542 2221 112234568889999999 4888999999 999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
|||||||+|||+.++
T Consensus 165 llLDEPts~LD~~~~ 179 (250)
T 2d2e_A 165 AVLDETDSGLDIDAL 179 (250)
T ss_dssp EEEECGGGTTCHHHH
T ss_pred EEEeCCCcCCCHHHH
Confidence 999999999998753
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7e-40 Score=261.86 Aligned_cols=147 Identities=13% Similarity=0.098 Sum_probs=131.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~ 91 (178)
++|+||||+|++|| +.+|+|+||+||| ||++++.|+.+|+ |+|.++|.++.. ..++++.++|+||+
T Consensus 14 ~vl~~vsl~i~~Ge----~~~liG~NGsGKS-------TLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 81 (249)
T 2qi9_C 14 TRLGPLSGEVRAGE----ILHLVGPNGAGKS-------TLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQ 81 (249)
T ss_dssp TTEEEEEEEEETTC----EEEEECCTTSSHH-------HHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSC
T ss_pred EEEeeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCC
Confidence 68999999999999 8889999999999 9999999999999 999999988753 34566789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC-------eEE
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD-------DGF 164 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~-------~ll 164 (178)
+.+++.+||+||+.++. ... .. .+++.++++.+++.+..++++.+|||||||||+|||||+.+|+ +||
T Consensus 82 ~~~~~~~tv~e~l~~~~-~~~---~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll 156 (249)
T 2qi9_C 82 QTPPFATPVWHYLTLHQ-HDK---TR-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL 156 (249)
T ss_dssp CCCCTTCBHHHHHHTTC-SST---TC-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE
T ss_pred CccCCCCcHHHHHHHhh-ccC---Cc-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE
Confidence 99999999999998642 111 12 5678899999999999999999999999999999999999999 999
Q ss_pred eeCCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYNT 177 (178)
Q Consensus 165 lDEPt~gLD~~~~ 177 (178)
|||||+|||+.++
T Consensus 157 LDEPts~LD~~~~ 169 (249)
T 2qi9_C 157 LDEPMNSLDVAQQ 169 (249)
T ss_dssp ESSTTTTCCHHHH
T ss_pred EECCcccCCHHHH
Confidence 9999999998753
No 26
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=8.6e-40 Score=261.86 Aligned_cols=143 Identities=20% Similarity=0.191 Sum_probs=125.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|. +++.++|+||++
T Consensus 18 ~~vl~~isl~i~~Ge----~~~l~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~-----------~~~~i~~v~q~~ 75 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGD----ILAVLGQNGCGKS-------TLLDLLLGIHRPIQGKIE-----------VYQSIGFVPQFF 75 (253)
T ss_dssp TEEEEEEEEEEETTC----EEEEECCSSSSHH-------HHHHHHTTSSCCSEEEEE-----------ECSCEEEECSCC
T ss_pred CeEEEEEEEEECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEE-----------EeccEEEEcCCC
Confidence 479999999999999 8889999999999 999999999999999986 356799999999
Q ss_pred CCCCCCCHHHHHHHHHHhc-C---CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 93 GINEHLTAQEMLECFSALR-G---IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
.+++.+||+||+.++.... + ....+..+++.++++.+++.+..++++.+|||||||||+|||||+.+|++||||||
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP 155 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9988999999998754221 1 11223346788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 156 ts~LD~~~~ 164 (253)
T 2nq2_C 156 TSALDLANQ 164 (253)
T ss_dssp STTSCHHHH
T ss_pred cccCCHHHH
Confidence 999998753
No 27
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.4e-39 Score=257.68 Aligned_cols=150 Identities=17% Similarity=0.114 Sum_probs=128.0
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEec
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCP 89 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~ 89 (178)
..++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++... .++++.++|+|
T Consensus 14 ~~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~ 82 (243)
T 1mv5_A 14 SEQILRDISFEAQPNS----IIAFAGPSGGGKS-------TIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVS 82 (243)
T ss_dssp SSCSEEEEEEEECTTE----EEEEECCTTSSHH-------HHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEEC
T ss_pred CCceEEEeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEc
Confidence 3579999999999999 8889999999999 999999999999999999999887543 34567899999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIG 158 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~ 158 (178)
|++.+++ .||+||+.++.. .....+++.++++.+++.+..++ ++.+|||||||||+|||||++
T Consensus 83 q~~~l~~-~tv~enl~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 83 QDSAIMA-GTIRENLTYGLE-----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp CSSCCCC-EEHHHHTTSCTT-----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred CCCcccc-ccHHHHHhhhcc-----CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 9998876 599999976311 11234567888999998766544 457999999999999999999
Q ss_pred CCCeEEeeCCCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYNTT 178 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~~~ 178 (178)
+|++|+|||||+|||+.+++
T Consensus 157 ~p~lllLDEPts~LD~~~~~ 176 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESES 176 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCC
T ss_pred CCCEEEEECCcccCCHHHHH
Confidence 99999999999999998864
No 28
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.6e-39 Score=259.43 Aligned_cols=147 Identities=16% Similarity=0.110 Sum_probs=125.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++.. ..++++.|+|+||
T Consensus 22 ~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q 90 (247)
T 2ff7_A 22 PVILDNINLSIKQGE----VIGIVGRSGSGKS-------TLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQ 90 (247)
T ss_dssp CEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECS
T ss_pred cceeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeC
Confidence 479999999999999 8889999999999 99999999999999999999998754 3456678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .||+||+.++. . ....+++.++++.+++.+..++ ++.+|||||||||+|||||+.+
T Consensus 91 ~~~l~~-~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 91 DNVLLN-RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp SCCCTT-SBHHHHHTTTC-----T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred CCcccc-ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 998876 69999997641 1 1224567778888888655544 4589999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 164 p~lllLDEPts~LD~~~~ 181 (247)
T 2ff7_A 164 PKILIFDEATSALDYESE 181 (247)
T ss_dssp CSEEEECCCCSCCCHHHH
T ss_pred CCEEEEeCCcccCCHHHH
Confidence 999999999999998753
No 29
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.7e-39 Score=260.77 Aligned_cols=155 Identities=15% Similarity=0.114 Sum_probs=129.8
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc--CCcccccccccccccccH--Hhh-ccceE
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF--SPFQAAQNSLLMTNIMHL--FQY-LSGIG 86 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~--~~~~~g~i~~~g~~~~~~--~~~-~~~ig 86 (178)
..++|+||||+|++|| +.+|+|+|||||| ||++++.|+ .+|++|+|.++|.++... ... +++++
T Consensus 32 ~~~vl~~vsl~i~~Ge----~~~l~G~NGsGKS-------TLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 100 (267)
T 2zu0_C 32 DKAILRGLSLDVHPGE----VHAIMGPNGSGKS-------TLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIF 100 (267)
T ss_dssp TEEEEEEEEEEECTTC----EEEEECCTTSSHH-------HHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEE
T ss_pred CEEEEEeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEE
Confidence 3579999999999999 8889999999999 999999999 478999999999987542 222 45699
Q ss_pred EecCCCCCCCCCCHHHHHHHHHH-h---cCCC---CCChhHHHHHHHHHcCCC-ccccCcCC-CCChHHHHHHHHHHHHh
Q psy860 87 YCPQFNGINEHLTAQEMLECFSA-L---RGIP---GVKSGPIIDYWIDLLGLT-EYRHRVSG-RYSGGNKRKLSTAMALI 157 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~-~---~~~~---~~~~~~~~~~~l~~~~L~-~~~~~~~~-~LSgGqkQRv~IAraL~ 157 (178)
|+||++.+++.+|+.+++.+... . .+.. ..+..+++.++++.+++. +..++++. +|||||||||+|||||+
T Consensus 101 ~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~ 180 (267)
T 2zu0_C 101 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 180 (267)
T ss_dssp EECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHH
T ss_pred EEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHH
Confidence 99999999999999999976431 1 1211 112345688999999996 57889987 59999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|++|||||||+|||+.++
T Consensus 181 ~~p~lLlLDEPts~LD~~~~ 200 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDAL 200 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHH
T ss_pred hCCCEEEEeCCCCCCCHHHH
Confidence 99999999999999998753
No 30
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=4.3e-39 Score=259.15 Aligned_cols=145 Identities=15% Similarity=0.108 Sum_probs=129.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceE-EecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIG-YCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig-~v~Q~ 91 (178)
.++|++|||+|+ || +.+|+|+||+||| ||++++.|+. |++|+|.++|.++... ..++.++ |+||+
T Consensus 18 ~~il~~vsl~i~-Ge----~~~i~G~NGsGKS-------TLlk~l~Gl~-p~~G~I~~~g~~~~~~-~~~~~i~~~v~Q~ 83 (263)
T 2pjz_A 18 RFSLENINLEVN-GE----KVIILGPNGSGKT-------TLLRAISGLL-PYSGNIFINGMEVRKI-RNYIRYSTNLPEA 83 (263)
T ss_dssp EEEEEEEEEEEC-SS----EEEEECCTTSSHH-------HHHHHHTTSS-CCEEEEEETTEEGGGC-SCCTTEEECCGGG
T ss_pred ceeEEeeeEEEC-CE----EEEEECCCCCCHH-------HHHHHHhCCC-CCCcEEEECCEECcch-HHhhheEEEeCCC
Confidence 469999999999 99 8889999999999 9999999999 9999999999877543 2266899 99999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
+.+ .+|++||+.++.... ....+++.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 84 ~~l--~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 84 YEI--GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp SCT--TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred Ccc--CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 887 899999999865443 23356789999999999 99999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy860 171 SQNLYNT 177 (178)
Q Consensus 171 gLD~~~~ 177 (178)
|||+.++
T Consensus 158 ~LD~~~~ 164 (263)
T 2pjz_A 158 NVDAARR 164 (263)
T ss_dssp TCCHHHH
T ss_pred ccCHHHH
Confidence 9998753
No 31
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.2e-39 Score=263.40 Aligned_cols=151 Identities=14% Similarity=0.045 Sum_probs=126.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++|.++.. ...+++.|+||||
T Consensus 32 ~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q 100 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGK----VTALVGPNGSGKS-------TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ 100 (271)
T ss_dssp SCCEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECS
T ss_pred ceeeEeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEec
Confidence 479999999999999 8889999999999 99999999999999999999998754 3445678999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCC-CChh-----HHHHHHHHHc--CCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPG-VKSG-----PIIDYWIDLL--GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~-~~~~-----~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
++.+++ .||+||+.++... ... .+.. ..+.++++.+ ++....++++.+|||||||||+|||||+.+|++
T Consensus 101 ~~~l~~-~tv~enl~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l 177 (271)
T 2ixe_A 101 EPLLFG-RSFRENIAYGLTR--TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRL 177 (271)
T ss_dssp SCCCCS-SBHHHHHHTTCSS--CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSE
T ss_pred CCcccc-ccHHHHHhhhccc--CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 998876 5999999864211 111 0111 1234567777 677788999999999999999999999999999
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
|||||||+|||+.++
T Consensus 178 llLDEPts~LD~~~~ 192 (271)
T 2ixe_A 178 LILDNATSALDAGNQ 192 (271)
T ss_dssp EEEESTTTTCCHHHH
T ss_pred EEEECCccCCCHHHH
Confidence 999999999998753
No 32
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.5e-39 Score=266.81 Aligned_cols=152 Identities=16% Similarity=0.151 Sum_probs=126.3
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+.+ .++|+||||+|++|| +.+|+|+|||||| ||++.+.|+.+|++|+|.++|.++.. ..++
T Consensus 61 ~~y~~~---~~vL~~isl~i~~Ge----~vaivG~sGsGKS-------TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~ 126 (306)
T 3nh6_A 61 FSYADG---RETLQDVSFTVMPGQ----TLALVGPSGAGKS-------TILRLLFRFYDISSGCIRIDGQDISQVTQASL 126 (306)
T ss_dssp EESSTT---CEEEEEEEEEECTTC----EEEEESSSCHHHH-------HHHHHHTTSSCCSEEEEEETTEETTSBCHHHH
T ss_pred EEcCCC---CceeeeeeEEEcCCC----EEEEECCCCchHH-------HHHHHHHcCCCCCCcEEEECCEEcccCCHHHH
Confidence 556432 479999999999999 8889999999999 99999999999999999999999865 4567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv 150 (178)
|+.|+||||++.+|+ .||+||+.++... ...+++.++++.+++.+. .++...+|||||||||
T Consensus 127 r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRv 199 (306)
T 3nh6_A 127 RSHIGVVPQDTVLFN-DTIADNIRYGRVT------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199 (306)
T ss_dssp HHTEEEECSSCCCCS-EEHHHHHHTTSTT------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHH
T ss_pred hcceEEEecCCccCc-ccHHHHHHhhccc------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHH
Confidence 889999999998874 6999999864211 123445666666665433 3455679999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+|++||||||||+||+.+
T Consensus 200 aiARAL~~~p~iLlLDEPts~LD~~~ 225 (306)
T 3nh6_A 200 AIARTILKAPGIILLDEATSALDTSN 225 (306)
T ss_dssp HHHHHHHHCCSEEEEECCSSCCCHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHH
Confidence 99999999999999999999999865
No 33
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=266.74 Aligned_cols=147 Identities=18% Similarity=0.130 Sum_probs=130.4
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEe
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYC 88 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v 88 (178)
|..++|+||||+|++|| +.+|+|+|||||| ||++++.|+.+ ++|+|.++|+++.. ..++++.|+||
T Consensus 32 ~~~~~L~~vsl~i~~Ge----~~~llGpsGsGKS-------TLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v 99 (390)
T 3gd7_A 32 GGNAILENISFSISPGQ----RVGLLGRTGSGKS-------TLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVI 99 (390)
T ss_dssp SSCCSEEEEEEEECTTC----EEEEEESTTSSHH-------HHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEE
T ss_pred CCeEEeeceeEEEcCCC----EEEEECCCCChHH-------HHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEE
Confidence 34579999999999999 8889999999999 99999999998 89999999998865 34567889999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCC-----------CChHHHHHHHHHHHHh
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGR-----------YSGGNKRKLSTAMALI 157 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-----------LSgGqkQRv~IAraL~ 157 (178)
||++.+|+ +||+||+.++ ....++++.++++.+++.+..++++.+ |||||||||+|||||+
T Consensus 100 ~Q~~~lf~-~tv~enl~~~-------~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~ 171 (390)
T 3gd7_A 100 PQKVFIFS-GTFRKNLDPN-------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVL 171 (390)
T ss_dssp SCCCCCCS-EEHHHHHCTT-------CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCcccCc-cCHHHHhhhc-------cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHh
Confidence 99999886 6999998532 123456788999999999999999998 9999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
.+|++||||||||+||+..+
T Consensus 172 ~~P~lLLLDEPts~LD~~~~ 191 (390)
T 3gd7_A 172 SKAKILLLDEPSAHLDPVTY 191 (390)
T ss_dssp TTCCEEEEESHHHHSCHHHH
T ss_pred cCCCEEEEeCCccCCCHHHH
Confidence 99999999999999998653
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.9e-37 Score=249.07 Aligned_cols=146 Identities=16% Similarity=0.079 Sum_probs=122.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+| +|+|.++|.++.. ..++++.|+|+||
T Consensus 33 ~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q 100 (260)
T 2ghi_A 33 HRTLKSINFFIPSGT----TCALVGHTGSGKS-------TIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQ 100 (260)
T ss_dssp SCSEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECS
T ss_pred CceeEeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcC
Confidence 369999999999999 8889999999999 999999999987 7999999988754 3456778999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .||+||+.++. .. ...+++.++++.+++.+. .++++.+|||||||||+|||||+.+
T Consensus 101 ~~~l~~-~tv~enl~~~~----~~--~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 101 DTILFN-ETIKYNILYGK----LD--ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp SCCCCS-EEHHHHHHTTC----TT--CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred CCcccc-cCHHHHHhccC----CC--CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 998875 69999997631 11 123456677777776443 2456789999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++|||||||+|||+.++
T Consensus 174 p~lllLDEPts~LD~~~~ 191 (260)
T 2ghi_A 174 PKIVIFDEATSSLDSKTE 191 (260)
T ss_dssp CSEEEEECCCCTTCHHHH
T ss_pred CCEEEEECccccCCHHHH
Confidence 999999999999998653
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.4e-36 Score=239.80 Aligned_cols=135 Identities=21% Similarity=0.156 Sum_probs=112.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++| .|+|+||++
T Consensus 21 ~~il~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~g-----------~i~~v~q~~ 78 (229)
T 2pze_A 21 TPVLKDINFKIERGQ----LLAVAGSTGAGKT-------SLLMMIMGELEPSEGKIKHSG-----------RISFCSQFS 78 (229)
T ss_dssp CCSEEEEEEEEETTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSEEEEEECS-----------CEEEECSSC
T ss_pred ceeeeeeEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCcCCccEEEECC-----------EEEEEecCC
Confidence 579999999999999 8889999999999 999999999999999999887 499999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-----------ccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-----------RHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
.+++. ||+||+.++. .. ......++++.+++.+. .++++.+|||||||||+|||||+.+|+
T Consensus 79 ~~~~~-tv~enl~~~~-----~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 79 WIMPG-TIKENIIFGV-----SY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp CCCSB-CHHHHHHTTS-----CC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred cccCC-CHHHHhhccC-----Cc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 88875 9999997631 11 12234445555555432 233468999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
++||||||+|||+.++
T Consensus 151 lllLDEPts~LD~~~~ 166 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTE 166 (229)
T ss_dssp EEEEESTTTTSCHHHH
T ss_pred EEEEECcccCCCHHHH
Confidence 9999999999998653
No 36
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=7.6e-37 Score=269.61 Aligned_cols=148 Identities=14% Similarity=0.087 Sum_probs=127.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| +.+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ..++|+.++||||
T Consensus 356 ~~~l~~i~l~i~~G~----~~~ivG~sGsGKS-------Tll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b5x_A 356 KPALSHVSFSIPQGK----TVALVGRSGSGKS-------TIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQ 424 (582)
T ss_pred ccccccceEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcC
Confidence 479999999999999 8889999999999 99999999999999999999998864 4567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .|++||+.++.. + ....+++.++++.+++.+..++ ...+||||||||++|||||+.+
T Consensus 425 ~~~l~~-~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~ 498 (582)
T 3b5x_A 425 NVHLFN-DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRD 498 (582)
T ss_pred CCcccc-ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcC
Confidence 999886 499999986421 1 1234567888888887655544 3479999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++++||||||+||+.++
T Consensus 499 p~illlDEpts~LD~~~~ 516 (582)
T 3b5x_A 499 APVLILDEATSALDTESE 516 (582)
T ss_pred CCEEEEECccccCCHHHH
Confidence 999999999999999764
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=7.5e-37 Score=269.62 Aligned_cols=148 Identities=16% Similarity=0.131 Sum_probs=126.6
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.+ ..++|+.++||||
T Consensus 356 ~~~l~~v~~~i~~G~----~~~ivG~sGsGKS-------TLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q 424 (582)
T 3b60_A 356 VPALRNINLKIPAGK----TVALVGRSGSGKS-------TIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQ 424 (582)
T ss_dssp CCSEEEEEEEECTTC----EEEEEECTTSSHH-------HHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECS
T ss_pred CccccceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEcc
Confidence 479999999999999 8889999999999 99999999999999999999998864 4567788999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++. |++||+.++.. + ....+++.++++.+++.+..++ ...+|||||||||+|||||+.+
T Consensus 425 ~~~l~~~-tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~ 498 (582)
T 3b60_A 425 NVHLFND-TVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRD 498 (582)
T ss_dssp SCCCCSS-BHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred CCcCCCC-CHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9998874 99999986421 1 1234567788888877654433 4579999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++++||||||+||+.++
T Consensus 499 p~illlDEpts~LD~~~~ 516 (582)
T 3b60_A 499 SPILILDEATSALDTESE 516 (582)
T ss_dssp CSEEEEETTTSSCCHHHH
T ss_pred CCEEEEECccccCCHHHH
Confidence 999999999999998753
No 38
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-36 Score=268.89 Aligned_cols=150 Identities=18% Similarity=0.141 Sum_probs=126.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| +.+|+|+|||||| ||++.+.|+.+|++|+|.++|.++.+ ..++|+.++||||
T Consensus 357 ~~vl~~isl~i~~G~----~~~ivG~sGsGKS-------TLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q 425 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGS----VTALVGPSGSGKS-------TVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425 (595)
T ss_dssp SEEEEEEEEEECTTC----EEEEECCTTSSST-------HHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECS
T ss_pred CccccceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEcc
Confidence 369999999999999 8889999999999 99999999999999999999998864 4567788999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-------cC----cCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-------HR----VSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-------~~----~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .|++||+.++... .....++++.++++.+++.+.. ++ ...+|||||||||+|||||+.+
T Consensus 426 ~~~l~~-~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~ 501 (595)
T 2yl4_A 426 EPILFS-CSIAENIAYGADD---PSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKN 501 (595)
T ss_dssp SCCCCS-SBHHHHHHTTSSS---TTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHC
T ss_pred CCcccC-CCHHHHHhhcCCC---ccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcC
Confidence 999886 5999999864211 0113356788889988875433 22 3489999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~~ 177 (178)
|++++||||||+||+.++
T Consensus 502 p~illlDEpts~LD~~~~ 519 (595)
T 2yl4_A 502 PKILLLDEATSALDAENE 519 (595)
T ss_dssp CSEEEEECCCSSCCHHHH
T ss_pred CCEEEEECcccCCCHHHH
Confidence 999999999999998753
No 39
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3e-36 Score=265.67 Aligned_cols=146 Identities=20% Similarity=0.163 Sum_probs=124.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| +.+|+|+|||||| |+++.+.|+.+|++|+|.++|.++.+ ..++|+.++||||
T Consensus 354 ~~~l~~isl~i~~G~----~~~ivG~sGsGKS-------Tll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q 422 (578)
T 4a82_A 354 APILKDINLSIEKGE----TVAFVGMSGGGKS-------TLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQ 422 (578)
T ss_dssp CCSEEEEEEEECTTC----EEEEECSTTSSHH-------HHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECS
T ss_pred CcceeeeEEEECCCC----EEEEECCCCChHH-------HHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeC
Confidence 479999999999999 8889999999999 99999999999999999999999875 4567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc-----------CcCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH-----------RVSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~-----------~~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++. |++||+.+.. + ....+++.++++..++.+..+ +...+|||||||||+|||||+.+
T Consensus 423 ~~~l~~~-tv~eni~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~ 495 (578)
T 4a82_A 423 DNILFSD-TVKENILLGR-----P-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495 (578)
T ss_dssp SCCCCSS-BHHHHHGGGC-----S-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred CCccCcc-cHHHHHhcCC-----C-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcC
Confidence 9998866 9999997631 1 122455667777776644333 34468999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~ 176 (178)
|++++||||||+||+.+
T Consensus 496 p~illlDEpts~LD~~~ 512 (578)
T 4a82_A 496 PPILILDEATSALDLES 512 (578)
T ss_dssp CSEEEEESTTTTCCHHH
T ss_pred CCEEEEECccccCCHHH
Confidence 99999999999999865
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.7e-36 Score=266.88 Aligned_cols=146 Identities=18% Similarity=0.124 Sum_probs=124.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| +.+|+|+|||||| ||++.+.|+.+|++|+|.++|.++.+ ..++|+.++||||
T Consensus 368 ~~~l~~isl~i~~G~----~~~ivG~sGsGKS-------Tll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q 436 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQ----KVALVGPTGSGKT-------TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQ 436 (598)
T ss_dssp SCSCCSEEEECCTTC----EEEEECCTTSSTT-------HHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECT
T ss_pred CccccceEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeC
Confidence 479999999999999 8889999999999 99999999999999999999999875 4567889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcC-----------CCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS-----------GRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgGqkQRv~IAraL~~~ 159 (178)
++.+++ .|++||+.+.. + ....+++.++++.+++.+..++.+ .+|||||||||+|||||+.+
T Consensus 437 ~~~lf~-~tv~eni~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 437 DTILFS-TTVKENLKYGN-----P-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp TCCCCS-SBHHHHHHSSS-----T-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred CCcccc-ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 998875 59999997631 1 112345666677776655554444 68999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~ 176 (178)
|++|+||||||+||+.+
T Consensus 510 p~illlDEpts~LD~~~ 526 (598)
T 3qf4_B 510 PKILILDEATSNVDTKT 526 (598)
T ss_dssp CSEEEECCCCTTCCHHH
T ss_pred CCEEEEECCccCCCHHH
Confidence 99999999999999865
No 41
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.6e-36 Score=240.63 Aligned_cols=135 Identities=19% Similarity=0.169 Sum_probs=111.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++| .++|+||++
T Consensus 18 ~~vl~~vsl~i~~Ge----~~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~ 75 (237)
T 2cbz_A 18 PPTLNGITFSIPEGA----LVAVVGQVGCGKS-------SLLSALLAEMDKVEGHVAIKG-----------SVAYVPQQA 75 (237)
T ss_dssp CCSEEEEEEEECTTC----EEEEECSTTSSHH-------HHHHHHTTCSEEEEEEEEECS-----------CEEEECSSC
T ss_pred CceeeeeEEEECCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCCceEEECC-----------EEEEEcCCC
Confidence 479999999999999 8889999999999 999999999999999999987 399999998
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHH------cCCCc-----cccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDL------LGLTE-----YRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~------~~L~~-----~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
.+ +.+||+||+.++.. .. .+ ...++++. +++.+ ..++++.+|||||||||+|||||+.+|+
T Consensus 76 ~~-~~~tv~enl~~~~~---~~-~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 76 WI-QNDSLRENILFGCQ---LE-EP---YYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp CC-CSEEHHHHHHTTSC---CC-TT---HHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred cC-CCcCHHHHhhCccc---cC-HH---HHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 64 58899999986421 11 11 22333333 33321 3568899999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
++||||||+|||+.++
T Consensus 148 lllLDEPts~LD~~~~ 163 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVG 163 (237)
T ss_dssp EEEEESTTTTSCHHHH
T ss_pred EEEEeCcccccCHHHH
Confidence 9999999999998653
No 42
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-35 Score=262.28 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=125.8
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+++ ..++|+||||+|++|| +.+|+|+|||||| ||++.+.|+.+|++|+|.++|.++.+ ..++
T Consensus 349 ~~y~~~--~~~~l~~isl~i~~Ge----~~~ivG~sGsGKS-------Tll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 349 FRYFEN--TDPVLSGVNFSVKPGS----LVAVLGETGSGKS-------TLMNLIPRLIDPERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp ECSSSS--SCCSEEEEEEEECTTC----EEEEECSSSSSHH-------HHHHTTTTSSCCSEEEEEESSSBGGGBCHHHH
T ss_pred EEcCCC--CCcceeceEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCccCCCcEEEECCEEcccCCHHHH
Confidence 455432 2479999999999999 8889999999999 99999999999999999999999875 4567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCC-----------CccccCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL-----------TEYRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgGqkQRv 150 (178)
|++|+||||++.+++. |++||+.+.. +. ...+++.++++..++ +...+++..+||||||||+
T Consensus 416 r~~i~~v~Q~~~lf~~-tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv 488 (587)
T 3qf4_A 416 RGHISAVPQETVLFSG-TIKENLKWGR-----ED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRL 488 (587)
T ss_dssp HHHEEEECSSCCCCSE-EHHHHHTTTC-----SS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHH
T ss_pred HhheEEECCCCcCcCc-cHHHHHhccC-----CC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHH
Confidence 8889999999998864 9999997531 11 123344445554443 3445677889999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+|++|+||||||+||+.+
T Consensus 489 ~lARal~~~p~illlDEpts~LD~~~ 514 (587)
T 3qf4_A 489 SIARALVKKPKVLILDDCTSSVDPIT 514 (587)
T ss_dssp HHHHHHHTCCSEEEEESCCTTSCHHH
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHH
Confidence 99999999999999999999999865
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1e-34 Score=236.61 Aligned_cols=134 Identities=20% Similarity=0.141 Sum_probs=110.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.++| .|+|+||++
T Consensus 51 ~~vl~~isl~i~~Ge----~~~i~G~NGsGKS-------TLlk~l~Gl~~p~~G~I~~~g-----------~i~~v~Q~~ 108 (290)
T 2bbs_A 51 TPVLKDINFKIERGQ----LLAVAGSTGAGKT-------SLLMMIMGELEPSEGKIKHSG-----------RISFCSQNS 108 (290)
T ss_dssp CCSEEEEEEEECTTC----EEEEEESTTSSHH-------HHHHHHTTSSCEEEEEEECCS-----------CEEEECSSC
T ss_pred ceEEEeeEEEEcCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCcEEEECC-----------EEEEEeCCC
Confidence 579999999999999 8889999999999 999999999999999999887 499999999
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc-----------cCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR-----------HRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
.+++. ||+||+. . . .. . ...+.++++.+++.+.. ++.+.+|||||||||+|||||+.+|+
T Consensus 109 ~l~~~-tv~enl~-~--~---~~-~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 109 WIMPG-TIKENII-G--V---SY-D-EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp CCCSS-BHHHHHH-T--T---CC-C-HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred ccCcc-cHHHHhh-C--c---cc-c-hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 88775 9999986 2 1 11 1 22344555666664332 23458999999999999999999999
Q ss_pred eEEeeCCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 162 ~lllDEPt~gLD~~~~ 177 (178)
++||||||+|||+.++
T Consensus 180 lllLDEPts~LD~~~~ 195 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTE 195 (290)
T ss_dssp EEEEESTTTTCCHHHH
T ss_pred EEEEECCcccCCHHHH
Confidence 9999999999998653
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.98 E-value=1.6e-33 Score=266.90 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=130.7
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+++- ..+||+||||+|++|| ..+|+|++||||| ||++.+.|+..|++|+|.+||.++.+ ...+
T Consensus 1084 f~Y~~~~-~~~VL~~isl~I~~Ge----~vaIVG~SGsGKS-------TL~~lL~rl~~p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1084 FAYPERP-EIEILKGLSFSVEPGQ----TLALVGPSGCGKS-------TVVALLERFYDTLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp ECCTTSC-SSCSEEEEEEEECTTC----EEEEECSTTSSTT-------SHHHHHTTSSCCSSSEEEETTEETTTBCHHHH
T ss_pred EeCCCCC-CCccccceeEEECCCC----EEEEECCCCChHH-------HHHHHHhcCccCCCCEEEECCEEhhhCCHHHH
Confidence 6785443 2479999999999999 8999999999999 99999999999999999999999986 5788
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccCcC----CCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHRVS----GRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~~~----~~LSgGqkQRv 150 (178)
|++|+||||+|.+|.. |++||+.++. -+.....+++.++++..++.+. .|..+ .+||||||||+
T Consensus 1152 R~~i~~V~Qdp~LF~g-TIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQri 1226 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFDC-SIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRI 1226 (1321)
T ss_dssp HTTEEEECSSCCCCSE-EHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHH
T ss_pred HhheEEECCCCEeeCc-cHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHH
Confidence 9999999999998764 9999996531 1122345668888888877432 33434 46999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+|++||||||||+||+.+
T Consensus 1227 aiARAllr~~~ILiLDEaTSaLD~~t 1252 (1321)
T 4f4c_A 1227 AIARALVRNPKILLLDEATSALDTES 1252 (1321)
T ss_dssp HHHHHHHSCCSEEEEESCCCSTTSHH
T ss_pred HHHHHHHhCCCEEEEeCccccCCHHH
Confidence 99999999999999999999999865
No 45
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=6.4e-33 Score=262.30 Aligned_cols=154 Identities=17% Similarity=0.077 Sum_probs=125.2
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+.+. ..++|+||||+|++|| ..+|+|+|||||| ||++.+.|+.+|++|+|.++|.++.. ...+
T Consensus 395 ~~y~~~~-~~~vL~~isl~i~~G~----~~~ivG~sGsGKS-------Tl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 395 FSYPSRK-EVQILKGLNLKVKSGQ----TVALVGNSGCGKS-------TTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp ECCSSTT-SCCSEEEEEEEECTTC----EEEEECCSSSSHH-------HHHHHTTTSSCCSEEEEEETTEEGGGSCHHHH
T ss_pred EEcCCCC-CCcceecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEECCEEHHhCCHHHH
Confidence 5564321 2479999999999999 8889999999999 99999999999999999999999875 4567
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-----------ccccCcCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-----------EYRHRVSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-----------~~~~~~~~~LSgGqkQRv 150 (178)
|+.||||||++.+++. |++||+.++.. ....+.+.++++..++. ........+|||||||||
T Consensus 463 r~~i~~v~Q~~~l~~~-ti~eNi~~g~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qri 535 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFAT-TIAENIRYGRE------DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRI 535 (1284)
T ss_dssp HHHEEEECSSCCCCSS-CHHHHHHHHCS------SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHH
T ss_pred HhheEEEcCCCccCCc-cHHHHHhcCCC------CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHH
Confidence 8889999999998865 99999987521 11233455555554432 223345668999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+|||||+.+|++||||||||+||+.+
T Consensus 536 aiARal~~~p~iliLDEpts~LD~~~ 561 (1284)
T 3g5u_A 536 AIARALVRNPKILLLDEATSALDTES 561 (1284)
T ss_dssp HHHHHHHHCCSEEEEESTTCSSCHHH
T ss_pred HHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 99999999999999999999999864
No 46
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.4e-32 Score=243.27 Aligned_cols=137 Identities=15% Similarity=0.167 Sum_probs=119.0
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
.|+++||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|+|.+ +..++|+||++..
T Consensus 371 ~l~~~~~~v~~Ge----i~~i~G~NGsGKS-------TLlk~l~Gl~~p~~G~I~~-----------~~~i~~v~Q~~~~ 428 (607)
T 3bk7_A 371 KLEVEPGEIRKGE----VIGIVGPNGIGKT-------TFVKMLAGVEEPTEGKVEW-----------DLTVAYKPQYIKA 428 (607)
T ss_dssp EEEECCEEEETTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSBSCCCC-----------CCCEEEECSSCCC
T ss_pred EEEecccccCCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCceEEEE-----------eeEEEEEecCccC
Confidence 5788888899999 8889999999999 9999999999999999965 2369999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
++.+||.+++....... . ...+++.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 429 ~~~~tv~e~~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~ 504 (607)
T 3bk7_A 429 EYEGTVYELLSKIDSSK-L---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 504 (607)
T ss_dssp CCSSBHHHHHHHHHHHH-H---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred CCCCcHHHHHHhhhccC-C---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH
Confidence 78899998876541111 0 1245688899999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy860 175 YNT 177 (178)
Q Consensus 175 ~~~ 177 (178)
.++
T Consensus 505 ~~~ 507 (607)
T 3bk7_A 505 EQR 507 (607)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 47
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=9.4e-33 Score=241.54 Aligned_cols=139 Identities=19% Similarity=0.069 Sum_probs=119.1
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
.|+.+||+|++|| +.+|+|+|||||| ||++++.|+.+|++|+|.+++. .++|+||+...
T Consensus 283 ~l~~~~~~i~~Ge----i~~i~G~nGsGKS-------TLl~~l~Gl~~p~~G~i~~~~~----------~i~~~~q~~~~ 341 (538)
T 3ozx_A 283 QLVVDNGEAKEGE----IIGILGPNGIGKT-------TFARILVGEITADEGSVTPEKQ----------ILSYKPQRIFP 341 (538)
T ss_dssp EEEECCEEEETTC----EEEEECCTTSSHH-------HHHHHHTTSSCCSBCCEESSCC----------CEEEECSSCCC
T ss_pred EEEeccceECCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCcEEEECCe----------eeEeechhccc
Confidence 4666788899999 8889999999999 9999999999999999976543 68999999777
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
.+..||.+++.+.. ... .......++++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 342 ~~~~tv~~~l~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~ 418 (538)
T 3ozx_A 342 NYDGTVQQYLENAS--KDA-LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV 418 (538)
T ss_dssp CCSSBHHHHHHHHC--SST-TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH
T ss_pred ccCCCHHHHHHHhh--hhc-cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 77899999987632 111 112345678899999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy860 175 YNT 177 (178)
Q Consensus 175 ~~~ 177 (178)
.++
T Consensus 419 ~~~ 421 (538)
T 3ozx_A 419 EER 421 (538)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 48
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.97 E-value=1.5e-32 Score=260.41 Aligned_cols=154 Identities=16% Similarity=0.155 Sum_probs=128.2
Q ss_pred hhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhh
Q psy860 4 FQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQY 81 (178)
Q Consensus 4 ~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~ 81 (178)
|.|+.. ...++|+||||+|++|| ..+|+|++||||| ||++.+.|+.+|++|+|.++|.++.+ ...+
T Consensus 423 F~Y~~~-~~~~vL~~isl~i~~G~----~vaivG~sGsGKS-------Tll~ll~~~~~~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 423 FTYPSR-PDVPILRGMNLRVNAGQ----TVALVGSSGCGKS-------TIISLLLRYYDVLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp ECCSSS-TTSCSEEEEEEEECTTC----EEEEEECSSSCHH-------HHHHHHTTSSCCSEEEEEETTEETTTSCHHHH
T ss_pred eeCCCC-CCCceeeceEEeecCCc----EEEEEecCCCcHH-------HHHHHhccccccccCcccCCCccchhccHHHH
Confidence 667432 23489999999999999 8899999999999 99999999999999999999999976 4678
Q ss_pred ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcc-------ccC----cCCCCChHHHHHH
Q psy860 82 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEY-------RHR----VSGRYSGGNKRKL 150 (178)
Q Consensus 82 ~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-------~~~----~~~~LSgGqkQRv 150 (178)
|+.|+||+|++.+| +-|++||+.++. + ....+++.++++..++.+. .+. .-.+||||||||+
T Consensus 491 r~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~-~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 491 RKNVAVVSQEPALF-NCTIEENISLGK-----E-GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHHEEEECSSCCCC-SEEHHHHHHTTC-----T-TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred hhcccccCCcceee-CCchhHHHhhhc-----c-cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 88999999999886 569999998641 2 1235567777777665332 222 3457999999999
Q ss_pred HHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 151 STAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 151 ~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
+||||+..+|+++|||||||+||+.+
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~t 589 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAES 589 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTT
T ss_pred HHHHHHccCCCEEEEecccccCCHHH
Confidence 99999999999999999999999976
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.8e-32 Score=239.77 Aligned_cols=137 Identities=16% Similarity=0.178 Sum_probs=118.2
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
.|+++||+|+.|| +.+|+|+|||||| ||++++.|+.+|++|+|.+ ...|+|+||++..
T Consensus 301 ~l~~~~~~i~~Ge----~~~i~G~NGsGKS-------TLlk~l~Gl~~p~~G~i~~-----------~~~i~~v~Q~~~~ 358 (538)
T 1yqt_A 301 RLEVEPGEIKKGE----VIGIVGPNGIGKT-------TFVKMLAGVEEPTEGKIEW-----------DLTVAYKPQYIKA 358 (538)
T ss_dssp EEEECCEEEETTC----EEEEECCTTSSHH-------HHHHHHHTSSCCSBCCCCC-----------CCCEEEECSSCCC
T ss_pred EEEeCccccCCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCeEEEE-----------CceEEEEecCCcC
Confidence 4778888899999 8889999999999 9999999999999999965 2369999999887
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
.+.+||.+++....... . ...+++.++++.+++.+..++++.+|||||||||+|||||+++|++|||||||+|||+
T Consensus 359 ~~~~tv~~~~~~~~~~~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~ 434 (538)
T 1yqt_A 359 DYEGTVYELLSKIDASK-L---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV 434 (538)
T ss_dssp CCSSBHHHHHHHHHHHH-H---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH
T ss_pred CCCCcHHHHHHhhhccC-C---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 78899988876531111 1 1245688899999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q psy860 175 YNT 177 (178)
Q Consensus 175 ~~~ 177 (178)
.++
T Consensus 435 ~~~ 437 (538)
T 1yqt_A 435 EQR 437 (538)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.97 E-value=2.1e-32 Score=258.75 Aligned_cols=148 Identities=17% Similarity=0.100 Sum_probs=123.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
.++|+||||+|++|| ..+|+|+||+||| ||++.+.|+.+|++|+|.++|.++.. ...+|++++||||
T Consensus 1046 ~~~l~~vsl~i~~Ge----~v~ivG~sGsGKS-------Tl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1046 IPVLQGLSLEVKKGQ----TLALVGSSGCGKS-------TVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114 (1284)
T ss_dssp CCSBSSCCEEECSSS----EEEEECSSSTTHH-------HHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEES
T ss_pred CeeecceeEEEcCCC----EEEEECCCCCCHH-------HHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECC
Confidence 369999999999999 8889999999999 99999999999999999999999865 4677889999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccC-----------cCCCCChHHHHHHHHHHHHhCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHR-----------VSGRYSGGNKRKLSTAMALIGD 159 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGqkQRv~IAraL~~~ 159 (178)
++.++ +.|++||+.++.. ......+.+.+.++..++.+..++ ...+|||||||||+|||||+.+
T Consensus 1115 ~~~l~-~~ti~eNi~~~~~----~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~ 1189 (1284)
T 3g5u_A 1115 EPILF-DCSIAENIAYGDN----SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189 (1284)
T ss_dssp SCCCC-SSBHHHHHTCCCS----SCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHC
T ss_pred CCccc-cccHHHHHhccCC----CCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcC
Confidence 99776 5799999975321 111224456666777666443333 2358999999999999999999
Q ss_pred CCeEEeeCCCCCCCCCC
Q psy860 160 RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 160 P~~lllDEPt~gLD~~~ 176 (178)
|++|||||||||||+.+
T Consensus 1190 p~iLiLDEpTs~lD~~~ 1206 (1284)
T 3g5u_A 1190 PHILLLDEATSALDTES 1206 (1284)
T ss_dssp CSSEEEESCSSSCCHHH
T ss_pred CCEEEEeCCcccCCHHH
Confidence 99999999999999865
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.3e-31 Score=237.14 Aligned_cols=143 Identities=13% Similarity=0.052 Sum_probs=118.1
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc---------cccccccccH----Hh
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN---------SLLMTNIMHL----FQ 80 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i---------~~~g~~~~~~----~~ 80 (178)
.+|++|| +|++|| +.+|+|+||+||| ||++.+.|+.+|++|++ .++|.++... ..
T Consensus 106 ~~l~~vs-~i~~Ge----~~~LiG~NGsGKS-------TLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 106 FVLYRLP-IVKDGM----VVGIVGPNGTGKT-------TAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp CEEECCC-CCCTTS----EEEEECCTTSSHH-------HHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred eeeCCCC-CCCCCC----EEEEECCCCChHH-------HHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 4899999 999999 8889999999999 99999999999999996 4566655432 11
Q ss_pred hccceEEecCCCCCCC---CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860 81 YLSGIGYCPQFNGINE---HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 81 ~~~~ig~v~Q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
.+..+++++|+..+.+ ..|+.|++.. .+..++++++++.+++.+..++++.+|||||||||+|||||+
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~---------~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~ 244 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKK---------VDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALL 244 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHH---------TCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHH
T ss_pred hhcceEEeechhhhchhhccccHHHHhhh---------hHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHh
Confidence 2346889999753322 2389988753 112345888999999999999999999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~~ 177 (178)
++|++||||||||+||+.++
T Consensus 245 ~~P~lLlLDEPTs~LD~~~~ 264 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLDIRQR 264 (607)
T ss_dssp SCCSEEEEECTTTTCCHHHH
T ss_pred cCCCEEEEECCcccCCHHHH
Confidence 99999999999999998753
No 52
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-31 Score=236.17 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=116.9
Q ss_pred ccccchhhhccHHHHH--HHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEML--ECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~--~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
.+++++||++..|++. + +.+|+|+||+||| ||++.+.|+.+|++|+.. . +.+++|+||+
T Consensus 361 ~~l~~vsl~v~~G~~~~GE-iv~iiG~NGsGKS-------TLlk~l~Gl~~p~~G~~~------~-----~~~i~~~~q~ 421 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSE-ILVMMGENGTGKT-------TLIKLLAGALKPDEGQDI------P-----KLNVSMKPQK 421 (608)
T ss_dssp EECSSCEEEECCEECCTTC-EEEEESCTTSSHH-------HHHHHHHTSSCCSBCCCC------C-----SCCEEEECSS
T ss_pred cccCceEEEEecCccccce-EEEEECCCCCcHH-------HHHHHHhcCCCCCCCcCc------c-----CCcEEEeccc
Confidence 5789999999999410 0 5789999999999 999999999999999731 1 2369999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
....+..||.+++... ... .....+.+.++++.+++.+.+++++.+|||||||||+|||||+++|++|||||||+|
T Consensus 422 ~~~~~~~tv~e~~~~~--~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~g 497 (608)
T 3j16_B 422 IAPKFPGTVRQLFFKK--IRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAY 497 (608)
T ss_dssp CCCCCCSBHHHHHHHH--CSS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred ccccCCccHHHHHHHH--hhc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCC
Confidence 8777778999976432 221 112345678899999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 498 LD~~~~ 503 (608)
T 3j16_B 498 LDSEQR 503 (608)
T ss_dssp CCHHHH
T ss_pred CCHHHH
Confidence 998653
No 53
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.7e-31 Score=233.71 Aligned_cols=142 Identities=13% Similarity=0.074 Sum_probs=117.0
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc---------cccccccccHH----h
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN---------SLLMTNIMHLF----Q 80 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i---------~~~g~~~~~~~----~ 80 (178)
.++++|| +|++|| +.+|+|+|||||| ||++++.|+.+|++|++ .++|.++.... .
T Consensus 36 ~~l~~vs-~i~~Ge----~~~LvG~NGaGKS-------TLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~ 103 (538)
T 1yqt_A 36 FVLYRLP-VVKEGM----VVGIVGPNGTGKS-------TAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103 (538)
T ss_dssp CEEECCC-CCCTTS----EEEEECCTTSSHH-------HHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHT
T ss_pred ccccCcC-cCCCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHH
Confidence 4899999 999999 8889999999999 99999999999999996 45666554321 1
Q ss_pred hccceEEecCCCCCCCC---CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860 81 YLSGIGYCPQFNGINEH---LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 81 ~~~~ig~v~Q~~~l~~~---ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
.+.++++++|+..+++. .++.+++.. . +..+++.++++.+|+.+..++++.+|||||||||+|||||+
T Consensus 104 ~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~-----~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~ 174 (538)
T 1yqt_A 104 GEIRPVVKPQYVDLIPKAVKGKVIELLKK----A-----DETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALL 174 (538)
T ss_dssp TSCCCEEECSCGGGSGGGCCSBHHHHHHH----H-----CSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhhhhhcchhhhccHHHHHhh----h-----hHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHh
Confidence 23468999997543332 378887742 1 11345788999999999899999999999999999999999
Q ss_pred CCCCeEEeeCCCCCCCCCC
Q psy860 158 GDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 158 ~~P~~lllDEPt~gLD~~~ 176 (178)
.+|++||||||||+||+.+
T Consensus 175 ~~P~lLlLDEPTs~LD~~~ 193 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLDIRQ 193 (538)
T ss_dssp SCCSEEEEESTTTTCCHHH
T ss_pred cCCCEEEEECCcccCCHHH
Confidence 9999999999999999864
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=3.8e-30 Score=230.09 Aligned_cols=152 Identities=14% Similarity=0.115 Sum_probs=92.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHh---------------------hhhhccCCcccccc---
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLL---------------------GSAIRFSPFQAAQN--- 68 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll---------------------~~~~~~~~~~~g~i--- 68 (178)
.++|+||||+|++|| +.+|+|+|||||| ||+ +.+.++..|+.+.+
T Consensus 31 ~~~L~~vsl~i~~Ge----~~~liGpNGaGKS-------TLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~ 99 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGK----LVVLTGLSGSGKS-------SLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGL 99 (670)
T ss_dssp STTCCSEEEEEETTS----EEEEECSTTSSHH-------HHHTTTHHHHHHHHHHTC--------------CCCSEEESC
T ss_pred ccceeccEEEECCCC----EEEEECCCCCCHH-------HHhcccccccccccccccchhhhhhhhcccccCCccceecc
Confidence 468999999999999 8889999999999 776 56667777774443
Q ss_pred ----cccccccccHHhhccceEEecCCCC-------------------CCCCCCHHHHHHHHHHhcCC--CCCChh----
Q psy860 69 ----SLLMTNIMHLFQYLSGIGYCPQFNG-------------------INEHLTAQEMLECFSALRGI--PGVKSG---- 119 (178)
Q Consensus 69 ----~~~g~~~~~~~~~~~~ig~v~Q~~~-------------------l~~~ltv~e~l~~~~~~~~~--~~~~~~---- 119 (178)
.+++..... ..++.+++++|.+. .++.+||.||+.++...... ......
T Consensus 100 ~~~i~~~~~~~~~--~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 177 (670)
T 3ux8_A 100 SPAISIDQKTTSR--NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILR 177 (670)
T ss_dssp CCEEEESSCC-------CCBHHHHTTCC-------------------------CC-------------------------
T ss_pred ccceEecCchhhc--cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHH
Confidence 333332211 12345666666432 24567899998774322110 000000
Q ss_pred --HHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCCC--eEEeeCCCCCCCCCCC
Q psy860 120 --PIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 120 --~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P~--~lllDEPt~gLD~~~~ 177 (178)
.....+++.+||.+. .++++.+|||||||||+|||||+++|+ +|||||||+||||.++
T Consensus 178 ~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~ 240 (670)
T 3ux8_A 178 EIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDN 240 (670)
T ss_dssp -CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGH
T ss_pred HHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHH
Confidence 111235888999764 689999999999999999999999998 9999999999999764
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=8.6e-29 Score=227.41 Aligned_cols=144 Identities=19% Similarity=0.063 Sum_probs=109.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|+||||+|+.|| +.+|+|+||+||| ||++.+.|+.+|++|+|++++.. .++|++|++
T Consensus 686 ~~iL~dVSl~I~~Ge----ivaIiGpNGSGKS-------TLLklLaGll~P~sG~I~~~~~~---------~I~yv~Q~~ 745 (986)
T 2iw3_A 686 KPQITDINFQCSLSS----RIAVIGPNGAGKS-------TLINVLTGELLPTSGEVYTHENC---------RIAYIKQHA 745 (986)
T ss_dssp SCSEEEEEEEEETTC----EEEECSCCCHHHH-------HHHHHHTTSSCCSEEEEEECTTC---------CEEEECHHH
T ss_pred ceeeeccEEEEcCCC----EEEEECCCCCCHH-------HHHHHHhCCCCCCceEEEEcCcc---------ceEeeccch
Confidence 468999999999999 8889999999999 99999999999999999887521 245555432
Q ss_pred C----CCCCCCHHHHHHHHH------------------------------------------------------------
Q psy860 93 G----INEHLTAQEMLECFS------------------------------------------------------------ 108 (178)
Q Consensus 93 ~----l~~~ltv~e~l~~~~------------------------------------------------------------ 108 (178)
. .....|+.+++.+..
T Consensus 746 ~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~E 825 (986)
T 2iw3_A 746 FAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGE 825 (986)
T ss_dssp HHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhh
Confidence 1 011223333322110
Q ss_pred -----------------------------------------HhcCCCCCChhHHHHHHHHHcCCCc-c-ccCcCCCCChH
Q psy860 109 -----------------------------------------ALRGIPGVKSGPIIDYWIDLLGLTE-Y-RHRVSGRYSGG 145 (178)
Q Consensus 109 -----------------------------------------~~~~~~~~~~~~~~~~~l~~~~L~~-~-~~~~~~~LSgG 145 (178)
...+.......++++++++.+|+.+ . .++++.+||||
T Consensus 826 Ni~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGG 905 (986)
T 2iw3_A 826 NIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGG 905 (986)
T ss_dssp STTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHH
T ss_pred hhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHH
Confidence 0011122233567889999999974 4 68899999999
Q ss_pred HHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 146 NKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 146 qkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
|||||+|||||+++|++|||||||+|||+.+
T Consensus 906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s 936 (986)
T 2iw3_A 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936 (986)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECGGGTCCHHH
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 9999999999999999999999999999864
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=1.5e-28 Score=225.71 Aligned_cols=137 Identities=18% Similarity=0.078 Sum_probs=112.3
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|...+|+||||+|+.|| +.+|+|+||+||| ||++++.+ |.+ +|.+.. . ..+++|++|
T Consensus 446 g~~~iL~~vsl~I~~Ge----~v~LiGpNGsGKS-------TLLk~Lag------G~i--~g~~~~--~--~~~~~~v~q 502 (986)
T 2iw3_A 446 GAKILLNKTQLRLKRAR----RYGICGPNGCGKS-------TLMRAIAN------GQV--DGFPTQ--E--ECRTVYVEH 502 (986)
T ss_dssp TTEEEEEEEEEEEETTC----EEEEECSTTSSHH-------HHHHHHHH------TCS--TTCCCT--T--TSCEEETTC
T ss_pred CCEEeEecceEEEcCCC----EEEEECCCCCCHH-------HHHHHHhC------CCc--CCCccc--c--ceeEEEEcc
Confidence 44579999999999999 8889999999999 99999984 333 332221 1 124789999
Q ss_pred CC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 91 FN-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 91 ~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
+. .+++.+|+.+++.+ ...+ . ++++.++++.+|+. +..++++.+|||||||||+|||||+.+|++||||||
T Consensus 503 ~~~~~~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEP 575 (986)
T 2iw3_A 503 DIDGTHSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEP 575 (986)
T ss_dssp CCCCCCTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEEST
T ss_pred cccccccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 85 67889999999865 1111 1 56789999999995 688999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q psy860 169 FSSQNLYNT 177 (178)
Q Consensus 169 t~gLD~~~~ 177 (178)
|+|||+.++
T Consensus 576 Ts~LD~~~~ 584 (986)
T 2iw3_A 576 TNHLDTVNV 584 (986)
T ss_dssp TTTCCHHHH
T ss_pred ccCCCHHHH
Confidence 999998753
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.94 E-value=4.1e-28 Score=212.22 Aligned_cols=141 Identities=18% Similarity=0.098 Sum_probs=107.3
Q ss_pred ccchhhh-ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc-----------cccccccccHH-h--
Q psy860 16 FNGINEH-LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN-----------SLLMTNIMHLF-Q-- 80 (178)
Q Consensus 16 ~~~v~~~-~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i-----------~~~g~~~~~~~-~-- 80 (178)
|+--.+. +++|| +.+|+|+|||||| ||++++.|+.+|++|++ .+.|.++.... +
T Consensus 14 f~l~~l~~~~~Ge----i~gLiGpNGaGKS-------TLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 14 FKLFGLPTPKNNT----ILGVLGKNGVGKT-------TVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEECCCCCCTTE----EEEEECCTTSSHH-------HHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred eeecCCCCCCCCC----EEEEECCCCCcHH-------HHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 3444453 45899 8889999999999 99999999999999998 56676654321 1
Q ss_pred -hccceEEecCCCCCC---CCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH
Q psy860 81 -YLSGIGYCPQFNGIN---EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 81 -~~~~ig~v~Q~~~l~---~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL 156 (178)
....+...+|..... ...++.+++... +.+++++++++.+++.+..++++.+|||||||||+|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~---------~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKI---------DERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASL 153 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHH---------CCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcc---------hhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 112344455543221 234777654321 1234578899999999999999999999999999999999
Q ss_pred hCCCCeEEeeCCCCCCCCCC
Q psy860 157 IGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 157 ~~~P~~lllDEPt~gLD~~~ 176 (178)
+++|++||||||||+||+.+
T Consensus 154 ~~~p~illlDEPts~LD~~~ 173 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRE 173 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHH
T ss_pred HcCCCEEEEECCcccCCHHH
Confidence 99999999999999999865
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.3e-27 Score=209.91 Aligned_cols=143 Identities=16% Similarity=0.162 Sum_probs=107.1
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc-----------cccccccccHH-h-h
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN-----------SLLMTNIMHLF-Q-Y 81 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i-----------~~~g~~~~~~~-~-~ 81 (178)
.+++++ .+++|| +.+|+|+||+||| ||++.+.|+.+|++|++ .+.|..+.... . .
T Consensus 93 ~l~~l~-~~~~Ge----i~~LvGpNGaGKS-------TLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 93 KLHRLP-TPRPGQ----VLGLVGTNGIGKS-------TALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp EEECCC-CCCTTS----EEEEECCTTSSHH-------HHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred eecCCC-CCCCCC----EEEEECCCCChHH-------HHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 566666 689999 8889999999999 99999999999999998 34444433221 1 1
Q ss_pred ccc--eEEecCCCCC------CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHH
Q psy860 82 LSG--IGYCPQFNGI------NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTA 153 (178)
Q Consensus 82 ~~~--ig~v~Q~~~l------~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IA 153 (178)
.+. ..+.+|.... .+..++.+++.. . ..+..++++++++.+++.+..++++.+|||||||||+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~----~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iA 233 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKL----R---MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIG 233 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHH----H---CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHH
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhh----h---hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHH
Confidence 122 2334443221 112244444332 1 123456799999999999999999999999999999999
Q ss_pred HHHhCCCCeEEeeCCCCCCCCCC
Q psy860 154 MALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 154 raL~~~P~~lllDEPt~gLD~~~ 176 (178)
|||+++|++||||||||+||+.+
T Consensus 234 raL~~~p~llllDEPts~LD~~~ 256 (608)
T 3j16_B 234 MSCVQEADVYMFDEPSSYLDVKQ 256 (608)
T ss_dssp HHHHSCCSEEEEECTTTTCCHHH
T ss_pred HHHHhCCCEEEEECcccCCCHHH
Confidence 99999999999999999999865
No 59
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.93 E-value=6.6e-27 Score=209.11 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=60.6
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCC---eEEeeCCCCCC
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRD---DGFQKLPFSSQ 172 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~---~lllDEPt~gL 172 (178)
.+|+.|++.++.. ....+++.+.++.+++. ...++++.+|||||||||+|||||+++|+ +|||||||+||
T Consensus 504 ~ltv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~L 577 (670)
T 3ux8_A 504 DMTVEDALDFFAS------IPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGL 577 (670)
T ss_dssp TSBHHHHHHHTTT------CHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTC
T ss_pred hCCHHHHHHHHHH------hhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCC
Confidence 4788888876421 12234567788999996 45689999999999999999999999875 99999999999
Q ss_pred CCCCC
Q psy860 173 NLYNT 177 (178)
Q Consensus 173 D~~~~ 177 (178)
|+.++
T Consensus 578 D~~~~ 582 (670)
T 3ux8_A 578 HVDDI 582 (670)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 98653
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.4e-27 Score=205.31 Aligned_cols=136 Identities=14% Similarity=-0.016 Sum_probs=112.1
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc-c-ccccccccccHHhhccceEEecCCCC
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA-Q-NSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g-~-i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
+.++||+++.|+ +.+|+|+|||||| ||++++.|+.+|++| + +.+++. .+++++|+||+..
T Consensus 128 y~~vsl~i~~Ge----~v~IvGpnGsGKS-------TLlr~L~Gl~~p~~G~~pI~vdg~-------~~~~i~~vpq~~~ 189 (460)
T 2npi_A 128 LEKIRMSNFEGP----RVVIVGGSQTGKT-------SLSRTLCSYALKFNAYQPLYINLD-------PQQPIFTVPGCIS 189 (460)
T ss_dssp HHHHHHHSSSCC----CEEEEESTTSSHH-------HHHHHHHHTTHHHHCCCCEEEECC-------TTSCSSSCSSCCE
T ss_pred hhcCceEeCCCC----EEEEECCCCCCHH-------HHHHHHhCcccccCCceeEEEcCC-------ccCCeeeeccchh
Confidence 348999999999 8889999999999 999999999999999 8 988872 3668999999974
Q ss_pred ---CCCCCCHHHHHHHHHHh-cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHH--HhCCCCe----E
Q psy860 94 ---INEHLTAQEMLECFSAL-RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMA--LIGDRDD----G 163 (178)
Q Consensus 94 ---l~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAra--L~~~P~~----l 163 (178)
+...+|+++|+ +.... .+ ....+++.++++.+|+.+..+ +.+|||||||||+|||| |+.+|++ |
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~---~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGL 263 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSG---ATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGC 263 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSS---CCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCE
T ss_pred hcccccccchhhhh-cccccccC---cchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceE
Confidence 34567888887 43221 11 112234556778899987766 88999999999999999 9999999 9
Q ss_pred EeeC-CCCCCCCC
Q psy860 164 FQKL-PFSSQNLY 175 (178)
Q Consensus 164 llDE-Pt~gLD~~ 175 (178)
|||| ||++||+.
T Consensus 264 lLDEpPts~LD~~ 276 (460)
T 2npi_A 264 IVDTPSISQLDEN 276 (460)
T ss_dssp EEECCCGGGSCSS
T ss_pred EEeCCcccccChh
Confidence 9999 99999986
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.89 E-value=2.1e-24 Score=197.46 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=103.9
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-cc----C---Ccccc-------------cccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-RF----S---PFQAA-------------QNSLLM 72 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-~~----~---~~~~g-------------~i~~~g 72 (178)
.+|+||||+|+.|| +.+|.|+||+||| ||++.++ +. . .+..| .+.+++
T Consensus 638 ~~Lk~Vsl~I~~Ge----iv~I~G~nGSGKS-------TLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq 706 (972)
T 2r6f_A 638 HNLKNVSVKIPLGT----FVAVTGVSGSGKS-------TLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQ 706 (972)
T ss_dssp SSCCSEEEEEESSS----EEECCBCTTSSHH-------HHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECS
T ss_pred cccccceEEEcCCC----EEEEEcCCCCCHH-------HHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcC
Confidence 47999999999999 8889999999999 8887753 11 1 11223 245555
Q ss_pred ccccc-----H----------Hh------hccceEEecCCCCCCC-----------------------------------
Q psy860 73 TNIMH-----L----------FQ------YLSGIGYCPQFNGINE----------------------------------- 96 (178)
Q Consensus 73 ~~~~~-----~----------~~------~~~~ig~v~Q~~~l~~----------------------------------- 96 (178)
.++.. + .+ ..+.+||++|...+.+
T Consensus 707 ~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r 786 (972)
T 2r6f_A 707 SPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKR 786 (972)
T ss_dssp SCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCC
T ss_pred cccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccccccc
Confidence 55421 0 00 1134688887543211
Q ss_pred -------------------CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHH
Q psy860 97 -------------------HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 97 -------------------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL 156 (178)
.+|+.|++.++.. . ...+++.++++.++|.. ..++++.+|||||||||+||+||
T Consensus 787 ~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~---~---~~~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL 860 (972)
T 2r6f_A 787 YNRETLEVTYKGKNIAEVLDMTVEDALDFFAS---I---PKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAEL 860 (972)
T ss_dssp BCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS---C---HHHHHHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHH
T ss_pred ccchhhhhhccCCCHHHhhhcCHHHHHHHHhc---c---hhHHHHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHH
Confidence 3466676655321 1 11234678899999986 78999999999999999999999
Q ss_pred hCCC---CeEEeeCCCCCCCCCC
Q psy860 157 IGDR---DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 157 ~~~P---~~lllDEPt~gLD~~~ 176 (178)
+.+| +++||||||+|||+.+
T Consensus 861 ~~~p~~p~lLILDEPTsGLD~~~ 883 (972)
T 2r6f_A 861 HRRSNGRTLYILDEPTTGLHVDD 883 (972)
T ss_dssp SSCCCSCEEEEEECTTTTCCHHH
T ss_pred hcCCCCCCEEEEECCCCCCCHHH
Confidence 9875 9999999999999865
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.88 E-value=1.1e-23 Score=192.96 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCCC---CeEEeeCCCCCCC
Q psy860 98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGDR---DDGFQKLPFSSQN 173 (178)
Q Consensus 98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~P---~~lllDEPt~gLD 173 (178)
+|+.|++.++.. .....++.++|+.+||.. ..++++.+|||||||||+|||||+.+| ++|||||||+|||
T Consensus 767 ~tv~eal~f~~~------~~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD 840 (916)
T 3pih_A 767 MTVDEALEFFKN------IPSIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLH 840 (916)
T ss_dssp SBHHHHHHHTTT------CHHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCC
T ss_pred CCHHHHHHHHhc------chhHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCC
Confidence 567777766421 122356778999999974 468899999999999999999999876 7999999999999
Q ss_pred CCC
Q psy860 174 LYN 176 (178)
Q Consensus 174 ~~~ 176 (178)
+.+
T Consensus 841 ~~~ 843 (916)
T 3pih_A 841 FED 843 (916)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 63
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.88 E-value=3.1e-24 Score=195.28 Aligned_cols=58 Identities=14% Similarity=-0.005 Sum_probs=52.4
Q ss_pred hHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHHhCC---CCeEEeeCCCCCCCCCC
Q psy860 119 GPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMALIGD---RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 119 ~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL~~~---P~~lllDEPt~gLD~~~ 176 (178)
.+++.++++.++|.. ..++++.+|||||||||.||+||+.+ |++|||||||+|||+.+
T Consensus 707 ~~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~ 768 (842)
T 2vf7_A 707 IFRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD 768 (842)
T ss_dssp HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHH
T ss_pred HHHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHH
Confidence 346788999999986 46899999999999999999999996 79999999999999864
No 64
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.88 E-value=8.7e-24 Score=193.96 Aligned_cols=146 Identities=15% Similarity=0.123 Sum_probs=102.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-c----cCC---ccccc-------------ccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-R----FSP---FQAAQ-------------NSLLM 72 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-~----~~~---~~~g~-------------i~~~g 72 (178)
.+|+||||+|+.|| +.+|.|+||+||| ||++.++ + ... +..|. +.+++
T Consensus 656 ~~Lk~Vsl~I~~Ge----ivaI~G~nGSGKS-------TLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq 724 (993)
T 2ygr_A 656 HNLRGIDVSFPLGV----LTSVTGVSGSGKS-------TLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQ 724 (993)
T ss_dssp TTCCSEEEEEESSS----EEEEECSTTSSHH-------HHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCC
T ss_pred ccccCceEEECCCC----EEEEEcCCCCCHH-------HHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecC
Confidence 47999999999999 8889999999999 8887753 1 111 12232 34555
Q ss_pred ccccc-----H----------Hh------hccceEEecCCCCCCC-----------------------------------
Q psy860 73 TNIMH-----L----------FQ------YLSGIGYCPQFNGINE----------------------------------- 96 (178)
Q Consensus 73 ~~~~~-----~----------~~------~~~~ig~v~Q~~~l~~----------------------------------- 96 (178)
.++.. + .+ ..+.+||++|...+.+
T Consensus 725 ~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r 804 (993)
T 2ygr_A 725 SPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGAR 804 (993)
T ss_dssp SCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCS
T ss_pred cccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccc
Confidence 44421 0 00 1134678777543211
Q ss_pred -------------------CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHHHH
Q psy860 97 -------------------HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAMAL 156 (178)
Q Consensus 97 -------------------~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAraL 156 (178)
.+|+.|++.++.. . ...+++.++++.++|.. ..++++.+|||||||||+||+||
T Consensus 805 ~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~---~---~~~~~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL 878 (993)
T 2ygr_A 805 YNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP---I---AGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASEL 878 (993)
T ss_dssp BCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT---C---HHHHHHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccCCCHHHHhhccHHHHHHHhhc---c---hHHHHHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHH
Confidence 2456666654321 1 11234578899999986 77899999999999999999999
Q ss_pred hCCC---CeEEeeCCCCCCCCCC
Q psy860 157 IGDR---DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 157 ~~~P---~~lllDEPt~gLD~~~ 176 (178)
+.+| ++|||||||+|||+.+
T Consensus 879 ~~~p~~p~lLILDEPTsGLD~~~ 901 (993)
T 2ygr_A 879 QKRSTGRTVYILDEPTTGLHFDD 901 (993)
T ss_dssp SSCCCSSEEEEEESTTTTCCHHH
T ss_pred HhCCCCCCEEEEECCCCCCCHHH
Confidence 9875 9999999999999864
No 65
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=8.9e-26 Score=175.69 Aligned_cols=118 Identities=14% Similarity=0.068 Sum_probs=84.2
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-HHhhccceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v~ 89 (178)
|...+|++| ++|| +.+|+|+|||||| ||++++.|+ +|++|+|.. .++.. ..+.++.+||+|
T Consensus 11 g~~~~l~~i----~~Ge----~~~liG~nGsGKS-------TLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~ 72 (208)
T 3b85_A 11 GQKHYVDAI----DTNT----IVFGLGPAGSGKT-------YLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLP 72 (208)
T ss_dssp HHHHHHHHH----HHCS----EEEEECCTTSSTT-------HHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSC
T ss_pred hHHHHHHhc----cCCC----EEEEECCCCCCHH-------HHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEec
Confidence 334688885 7899 8889999999999 999999999 999999842 22221 123567899999
Q ss_pred CCCCCCCCCCHHHHH-HH----HHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 90 QFNGINEHLTAQEML-EC----FSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l-~~----~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
|++ .||+ .+ ....... ...++++++++. ++ ||||||+|||||+.+|++||
T Consensus 73 q~~--------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl-------------Gq~qrv~lAraL~~~p~lll 127 (208)
T 3b85_A 73 GTL--------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI-------------VEVAPLAYMRGRTLNDAFVI 127 (208)
T ss_dssp C--------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS-------------EEEEEGGGGTTCCBCSEEEE
T ss_pred CCH--------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC-------------chHHHHHHHHHHhcCCCEEE
Confidence 986 2333 11 1111111 123456677765 44 99999999999999999999
Q ss_pred eeCCCCC
Q psy860 165 QKLPFSS 171 (178)
Q Consensus 165 lDEPt~g 171 (178)
|||||+|
T Consensus 128 LDEPts~ 134 (208)
T 3b85_A 128 LDEAQNT 134 (208)
T ss_dssp ECSGGGC
T ss_pred EeCCccc
Confidence 9999998
No 66
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.87 E-value=1.7e-25 Score=189.85 Aligned_cols=139 Identities=11% Similarity=0.044 Sum_probs=111.1
Q ss_pred cccccchhhhccHHHHHHH----------------hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc
Q psy860 13 CPQFNGINEHLTAQEMLEC----------------FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM 76 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~----------------~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~ 76 (178)
..++++|||+|+.|+.-+. +.+|+|+||+||| ||++.+.|+.+|++|.+.+++.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKS-------TLln~L~Gl~~p~~GsI~~~g~~~t 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKS-------SFINTLRGIGNEEEGAAKTGVVEVT 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHH-------HHHHHHHTCCTTSTTSCCCCC----
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHH-------HHHHHHhCCCCccCceEEECCeecc
Confidence 3589999999999994333 5789999999999 9999999999999999998887542
Q ss_pred cHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChH--HHHHHHHHH
Q psy860 77 HLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGG--NKRKLSTAM 154 (178)
Q Consensus 77 ~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG--qkQRv~IAr 154 (178)
+ .++++|++ .++++|+.|+..+.. .+..++++++.+++.+... .+. ||+| ||||+.||+
T Consensus 109 -----~--~~~v~q~~-~~~~ltv~D~~g~~~---------~~~~~~~~L~~~~L~~~~~-~~~-lS~G~~~kqrv~la~ 169 (413)
T 1tq4_A 109 -----M--ERHPYKHP-NIPNVVFWDLPGIGS---------TNFPPDTYLEKMKFYEYDF-FII-ISATRFKKNDIDIAK 169 (413)
T ss_dssp -----C--CCEEEECS-SCTTEEEEECCCGGG---------SSCCHHHHHHHTTGGGCSE-EEE-EESSCCCHHHHHHHH
T ss_pred -----e--eEEecccc-ccCCeeehHhhcccc---------hHHHHHHHHHHcCCCccCC-eEE-eCCCCccHHHHHHHH
Confidence 2 27899985 467788887653321 1235788999999876533 333 9999 999999999
Q ss_pred HHhC----------CCCeEEeeCCCCCCCCCCC
Q psy860 155 ALIG----------DRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 155 aL~~----------~P~~lllDEPt~gLD~~~~ 177 (178)
||++ +|++++|||||+|||+.++
T Consensus 170 aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~ 202 (413)
T 1tq4_A 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDK 202 (413)
T ss_dssp HHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCH
T ss_pred HHHhcCCCeEEEEecCcccccCcccccCCHHHH
Confidence 9999 9999999999999999864
No 67
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.84 E-value=5.4e-22 Score=167.38 Aligned_cols=151 Identities=10% Similarity=-0.016 Sum_probs=99.4
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC------------------------------
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP------------------------------ 62 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~------------------------------ 62 (178)
...++++||++.+| +.+|+|+||+||| ||+..+.++..
T Consensus 48 f~~l~~v~l~~~~G-----~~~lvG~NGaGKS-------tLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~ 115 (415)
T 4aby_A 48 LATITQLELELGGG-----FCAFTGETGAGKS-------IIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEAD 115 (415)
T ss_dssp ETTEEEEEEECCSS-----EEEEEESHHHHHH-------HHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------C
T ss_pred ccceeeEEEecCCC-----cEEEECCCCCCHH-------HHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceE
Confidence 46899999999998 4569999999999 88877655543
Q ss_pred --------ccccccccccccccc--HHhhc-cceEEecCCCCCCCCCCHHHHHHHHHHhc--------------------
Q psy860 63 --------FQAAQNSLLMTNIMH--LFQYL-SGIGYCPQFNGINEHLTAQEMLECFSALR-------------------- 111 (178)
Q Consensus 63 --------~~~g~i~~~g~~~~~--~~~~~-~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~-------------------- 111 (178)
+..+.++++|+++.. +.++. ..+++++|+..++.. +..+...+.-...
T Consensus 116 ~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~ 194 (415)
T 4aby_A 116 SASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSR 194 (415)
T ss_dssp EEEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 446778999988764 34444 348999998765432 3322222210000
Q ss_pred --CCCCC--------------------------------------ChhHHHHHHHHHcCCCcc-----------------
Q psy860 112 --GIPGV--------------------------------------KSGPIIDYWIDLLGLTEY----------------- 134 (178)
Q Consensus 112 --~~~~~--------------------------------------~~~~~~~~~l~~~~L~~~----------------- 134 (178)
..... ...+.+.+.++.+++...
T Consensus 195 ~~~l~~~~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~ 274 (415)
T 4aby_A 195 LERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGL 274 (415)
T ss_dssp HHHC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEE
T ss_pred HHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCC
Confidence 00000 011233444555554320
Q ss_pred ------cc-------CcCCC-CChHHHHHHHHHHHHhCCC--CeEEeeCCCCCCCCCC
Q psy860 135 ------RH-------RVSGR-YSGGNKRKLSTAMALIGDR--DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 135 ------~~-------~~~~~-LSgGqkQRv~IAraL~~~P--~~lllDEPt~gLD~~~ 176 (178)
.. +++.. |||||||||+||++|+.+| ++|||||||+|||+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~ 332 (415)
T 4aby_A 275 SDVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA 332 (415)
T ss_dssp EEEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHH
T ss_pred ceEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHH
Confidence 00 22223 6999999999999999999 9999999999999864
No 68
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=2.9e-24 Score=176.45 Aligned_cols=123 Identities=7% Similarity=-0.061 Sum_probs=101.4
Q ss_pred ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHH
Q psy860 23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQE 102 (178)
Q Consensus 23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e 102 (178)
++.|+ +.+|.|+|||||| ||++.+.++.+|+.|. +.+++|+|++.+++. |+.+
T Consensus 87 ~~~g~----ivgI~G~sGsGKS-------TL~~~L~gll~~~~G~---------------~~v~~v~qd~~~~~~-t~~e 139 (312)
T 3aez_A 87 RPVPF----IIGVAGSVAVGKS-------TTARVLQALLARWDHH---------------PRVDLVTTDGFLYPN-AELQ 139 (312)
T ss_dssp SCCCE----EEEEECCTTSCHH-------HHHHHHHHHHHTSTTC---------------CCEEEEEGGGGBCCH-HHHH
T ss_pred CCCCE----EEEEECCCCchHH-------HHHHHHHhhccccCCC---------------CeEEEEecCccCCcc-cHHH
Confidence 77888 7889999999999 9999999998886553 369999999888887 9999
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 103 MLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 103 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
++.+.. .++.+.....+.+.++++.++ ....+.++.+|||||+|||++|+|++.+|++||+|||++.+|+
T Consensus 140 ~~~~~~-~~g~~~~~d~~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 140 RRNLMH-RKGFPESYNRRALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HTTCTT-CTTSGGGBCHHHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHH-hcCCChHHHHHHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 875421 123333344567888899888 5555678889999999999999999999999999999999985
No 69
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.84 E-value=1.5e-23 Score=171.45 Aligned_cols=139 Identities=8% Similarity=-0.024 Sum_probs=113.4
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------Hhh--ccce
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQY--LSGI 85 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~--~~~i 85 (178)
.+++.+||+++.|+ +.+++|+|||||| |+++.+.++.+|++|.+.+.+.+.... ..+ +.++
T Consensus 88 ~~~~~l~~~~~~g~----vi~lvG~nGsGKT-------Tll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i 156 (302)
T 3b9q_A 88 NSKTELQLGFRKPA----VIMIVGVNGGGKT-------TSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGC 156 (302)
T ss_dssp -CCCSCCCCSSSCE----EEEEECCTTSCHH-------HHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTC
T ss_pred ccccccccccCCCc----EEEEEcCCCCCHH-------HHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCc
Confidence 34567999999999 7889999999999 999999999999999999999886543 223 3579
Q ss_pred EEecCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC--e
Q psy860 86 GYCPQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD--D 162 (178)
Q Consensus 86 g~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~--~ 162 (178)
+|++|++. +++.+++++++.++... +. . ..+++.+|+.+..++++.+|| |||++||||++.+|+ +
T Consensus 157 ~~v~q~~~~~~~~~~v~e~l~~~~~~-~~---d-----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~l 224 (302)
T 3b9q_A 157 EIVVAEGDKAKAATVLSKAVKRGKEE-GY---D-----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEIL 224 (302)
T ss_dssp EEECCC--CCCHHHHHHHHHHHHHHT-TC---S-----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEE
T ss_pred eEEEecCCccCHHHHHHHHHHHHHHc-CC---c-----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeE
Confidence 99999988 88889999999875421 11 1 124567788888888999999 999999999999999 9
Q ss_pred EEeeCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYN 176 (178)
Q Consensus 163 lllDEPt~gLD~~~ 176 (178)
|+|| ||+|||+.+
T Consensus 225 LvLD-ptsglD~~~ 237 (302)
T 3b9q_A 225 LVLD-GNTGLNMLP 237 (302)
T ss_dssp EEEE-GGGGGGGHH
T ss_pred EEEe-CCCCcCHHH
Confidence 9999 999999854
No 70
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.82 E-value=5.4e-24 Score=171.62 Aligned_cols=125 Identities=13% Similarity=0.078 Sum_probs=84.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcC
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRG 112 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~ 112 (178)
.+|+|+||+||| ||++++.|+..|++|++.++|+++... ..++.++|++|++.+++.+||.|++.++.....
T Consensus 5 v~lvG~nGaGKS-------TLln~L~g~~~~~~G~i~~~g~~i~~~-~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~ 76 (270)
T 3sop_A 5 IMVVGQSGLGKS-------TLVNTLFKSQVSRKASSWNREEKIPKT-VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN 76 (270)
T ss_dssp EEEEESSSSSHH-------HHHHHHHHHHC------------CCCC-CSCCEEEESCC----CCEEEEECCCC--CCSBC
T ss_pred EEEECCCCCCHH-------HHHHHHhCCCCCCCCccccCCcccCcc-eeeeeeEEEeecCCCcCCceEEechhhhhhccc
Confidence 568999999999 999999999999999999999877432 335679999999999999999999876532221
Q ss_pred CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860 113 IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 113 ~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~ 175 (178)
....+.+.++++ ....++.+.+|||||||||++|||++. ++++|||++|||+.
T Consensus 77 ---~~~~~~i~~~~~----~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~l 129 (270)
T 3sop_A 77 ---ENCWEPIEKYIN----EQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPL 129 (270)
T ss_dssp ---TTCSHHHHHHHH----HHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHH
T ss_pred ---HHHHHHHHHHHH----HHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHH
Confidence 222334544444 356677888999999999999999886 99999999999974
No 71
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=4.8e-22 Score=151.02 Aligned_cols=108 Identities=7% Similarity=-0.106 Sum_probs=76.5
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH--hhccceEEecCCCCCCCCCCHHHHHHHHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF--QYLSGIGYCPQFNGINEHLTAQEMLECFSA 109 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~--~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~ 109 (178)
..+|+|+||+||| ||++.+.|+.+ +.++|....+.. ..++.+||++|+.. +.+++ + ..
T Consensus 2 ~i~l~G~nGsGKT-------TLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~-~-~~ 61 (178)
T 1ye8_A 2 KIIITGEPGVGKT-------TLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI-F-SS 61 (178)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETT------CCEEE-E-EE
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCc------HHHHH-H-Hh
Confidence 3568999999999 99999998874 556665543332 44668999999752 11111 0 00
Q ss_pred hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHH-----HhCCCCeEEeeC--CCCCCCCCC
Q psy860 110 LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMA-----LIGDRDDGFQKL--PFSSQNLYN 176 (178)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAra-----L~~~P~~lllDE--Pt~gLD~~~ 176 (178)
. .. .-.+..++++.+||||||||++||+| ++.+|++++||| ||++||+..
T Consensus 62 ~-~~----------------~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~ 118 (178)
T 1ye8_A 62 K-FF----------------TSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKF 118 (178)
T ss_dssp T-TC----------------CCSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHH
T ss_pred h-cC----------------CccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHH
Confidence 0 00 00135678899999999999999996 999999999999 999999854
No 72
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.80 E-value=2.9e-22 Score=167.33 Aligned_cols=136 Identities=8% Similarity=-0.015 Sum_probs=113.7
Q ss_pred cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------Hhh--ccceEEe
Q psy860 17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQY--LSGIGYC 88 (178)
Q Consensus 17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~--~~~ig~v 88 (178)
+.+||+++.|+ +.+++|+|||||| |+++.+.++.+|++|.+.+.+.++... ..+ +.+++|+
T Consensus 148 ~~l~l~~~~g~----vi~lvG~nGsGKT-------Tll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v 216 (359)
T 2og2_A 148 TELQLGFRKPA----VIMIVGVNGGGKT-------TSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIV 216 (359)
T ss_dssp CSCCCCSSSSE----EEEEECCTTSCHH-------HHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEE
T ss_pred CCcceecCCCe----EEEEEcCCCChHH-------HHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEE
Confidence 57899999999 7889999999999 999999999999999999999887543 222 4579999
Q ss_pred cCCCC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC--eEEe
Q psy860 89 PQFNG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQ 165 (178)
Q Consensus 89 ~Q~~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~--~lll 165 (178)
+|++. +++..++++++.+.... +. + ..+++.+|+.+..++++.+|| |||++||||++.+|+ +|+|
T Consensus 217 ~q~~~~~~p~~tv~e~l~~~~~~-~~---d-----~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvL 284 (359)
T 2og2_A 217 VAEGDKAKAATVLSKAVKRGKEE-GY---D-----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVL 284 (359)
T ss_dssp CCSSSSCCHHHHHHHHHHHHHHT-TC---S-----EEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEE
T ss_pred EecccccChhhhHHHHHHHHHhC-CC---H-----HHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEE
Confidence 99988 88889999999875421 11 1 123566788887888899999 999999999999999 9999
Q ss_pred eCCCCCCCCCC
Q psy860 166 KLPFSSQNLYN 176 (178)
Q Consensus 166 DEPt~gLD~~~ 176 (178)
| ||+|||+.+
T Consensus 285 D-pttglD~~~ 294 (359)
T 2og2_A 285 D-GNTGLNMLP 294 (359)
T ss_dssp E-GGGGGGGHH
T ss_pred c-CCCCCCHHH
Confidence 9 999999864
No 73
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.79 E-value=2.8e-21 Score=145.32 Aligned_cols=116 Identities=11% Similarity=-0.008 Sum_probs=76.6
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC-CC
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI-NE 96 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l-~~ 96 (178)
||||+++.|| +.+|+|+|||||| |+++.+.+ |...+ ....+ .|+++|++.- ..
T Consensus 1 ~vsl~i~~ge----i~~l~G~nGsGKS-------Tl~~~~~~------~~~~~------~~d~~---~g~~~~~~~~~~~ 54 (171)
T 4gp7_A 1 SMKLTIPELS----LVVLIGSSGSGKS-------TFAKKHFK------PTEVI------SSDFC---RGLMSDDENDQTV 54 (171)
T ss_dssp CEEEEEESSE----EEEEECCTTSCHH-------HHHHHHSC------GGGEE------EHHHH---HHHHCSSTTCGGG
T ss_pred CccccCCCCE----EEEEECCCCCCHH-------HHHHHHcc------CCeEE------ccHHH---HHHhcCcccchhh
Confidence 6899999999 8889999999999 99887542 11111 11111 2677777531 11
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~ 175 (178)
.-++.+.+.. .+. .....+.....+. ....|+||||||+||||++.+|++++|||||++||+.
T Consensus 55 ~~~~~~~~~~--------------~~~-~~~~~g~~~~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 55 TGAAFDVLHY--------------IVS-KRLQLGKLTVVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER 117 (171)
T ss_dssp HHHHHHHHHH--------------HHH-HHHHTTCCEEEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHH--------------HHH-HHHhCCCeEEEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence 1111222111 111 1223455444443 3456999999999999999999999999999999986
No 74
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=1.1e-20 Score=155.29 Aligned_cols=44 Identities=20% Similarity=0.084 Sum_probs=39.4
Q ss_pred ccccCcCCCCChHHHHHHHHHHHHh----CCCCeEEeeCCCCCCCCCC
Q psy860 133 EYRHRVSGRYSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 133 ~~~~~~~~~LSgGqkQRv~IAraL~----~~P~~lllDEPt~gLD~~~ 176 (178)
+..++++.+||+||||||+||+||+ .+|+++||||||++||+.+
T Consensus 211 ~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~ 258 (322)
T 1e69_A 211 GRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYN 258 (322)
T ss_dssp TSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHH
T ss_pred ccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHH
Confidence 3456788999999999999999997 6899999999999999864
No 75
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.77 E-value=5.1e-22 Score=162.54 Aligned_cols=116 Identities=13% Similarity=0.022 Sum_probs=90.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++|++|||+|++|+ +.+|+|+||+||| ||++.+.|+. +|+| ++|++|++
T Consensus 113 ~~vL~~vsl~i~~Ge----~vaIvGpsGsGKS-------TLl~lL~gl~---~G~I----------------~~~v~q~~ 162 (305)
T 2v9p_A 113 INALKLWLKGIPKKN----CLAFIGPPNTGKS-------MLCNSLIHFL---GGSV----------------LSFANHKS 162 (305)
T ss_dssp HHHHHHHHHTCTTCS----EEEEECSSSSSHH-------HHHHHHHHHH---TCEE----------------ECGGGTTS
T ss_pred hhhhccceEEecCCC----EEEEECCCCCcHH-------HHHHHHhhhc---CceE----------------EEEecCcc
Confidence 368999999999999 8889999999999 9999999987 6776 45677877
Q ss_pred CCCCCCCHHH-HHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 93 GINEHLTAQE-MLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 93 ~l~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~g 171 (178)
.++. .|+++ |+.+.. ...+.+.+.++.+ +.+..+ ...|||||||| ||||+.+|++|| ||+
T Consensus 163 ~lf~-~ti~~~ni~~~~--------~~~~~~~~~i~~~-L~~gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~ 223 (305)
T 2v9p_A 163 HFWL-ASLADTRAALVD--------DATHACWRYFDTY-LRNALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSN 223 (305)
T ss_dssp GGGG-GGGTTCSCEEEE--------EECHHHHHHHHHT-TTGGGG--TCCEECCCSSC---CCCEECCCCEEE----EES
T ss_pred cccc-ccHHHHhhccCc--------cccHHHHHHHHHH-hHccCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECC
Confidence 6654 35654 554310 1112455666664 555445 78999999999 999999999999 999
Q ss_pred CCCCCC
Q psy860 172 QNLYNT 177 (178)
Q Consensus 172 LD~~~~ 177 (178)
||+.++
T Consensus 224 LD~~~~ 229 (305)
T 2v9p_A 224 IDVQAE 229 (305)
T ss_dssp SCSTTC
T ss_pred CCHHHH
Confidence 999875
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.75 E-value=1.5e-23 Score=163.69 Aligned_cols=139 Identities=14% Similarity=0.003 Sum_probs=90.2
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH---HhhccceEEecCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL---FQYLSGIGYCPQF 91 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~---~~~~~~ig~v~Q~ 91 (178)
-|+||||+|++|+ +.+|+|||||||| ||++.+.|+. | |.+.+ +.+.... ...+++++|+||+
T Consensus 12 ~l~~isl~i~~G~----~~~lvGpsGsGKS-------TLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~ 76 (218)
T 1z6g_A 12 SGLVPRGSMNNIY----PLVICGPSGVGKG-------TLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFID 76 (218)
T ss_dssp ----------CCC----CEEEECSTTSSHH-------HHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECC
T ss_pred cccCCceecCCCC----EEEEECCCCCCHH-------HHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECC
Confidence 5899999999999 8889999999999 9999999988 5 88877 6655322 1245689999998
Q ss_pred CCCCCCCCH-HHHHH---HHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHH-----HHHHhCCCCe
Q psy860 92 NGINEHLTA-QEMLE---CFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLST-----AMALIGDRDD 162 (178)
Q Consensus 92 ~~l~~~ltv-~e~l~---~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~I-----AraL~~~P~~ 162 (178)
+.+++.++. .+++. +....++ .....++++++...+. ..+ .+|||||+||++| |++++..|++
T Consensus 77 ~~~~~~~~~~~~~l~~~~~~~~~~g----~~~~~i~~~l~~~~~~-il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~ 148 (218)
T 1z6g_A 77 KTIFEDKLKNEDFLEYDNYANNFYG----TLKSEYDKAKEQNKIC-LFE---MNINGVKQLKKSTHIKNALYIFIKPPST 148 (218)
T ss_dssp HHHHHHHHHTTCEEEEEEETTEEEE----EEHHHHHHHHHTTCEE-EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCH
T ss_pred HHHHHHhhhccchhhhhhcccccCC----CcHHHHHHHHhCCCcE-EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCH
Confidence 765443221 00110 0000111 1134566677654432 222 5799999999999 8999999999
Q ss_pred EEeeCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYN 176 (178)
Q Consensus 163 lllDEPt~gLD~~~ 176 (178)
++|||||+++|..+
T Consensus 149 ~~Lde~~~~~d~~~ 162 (218)
T 1z6g_A 149 DVLLSRLLTRNTEN 162 (218)
T ss_dssp HHHHHHHHHTCCCC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999999764
No 77
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.74 E-value=5.8e-20 Score=145.31 Aligned_cols=136 Identities=10% Similarity=-0.011 Sum_probs=91.0
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecC
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
|..++|+||||+++.|+ +.+|.|+|||||| |+++.+.++. |.+.++ ..++.++|++|
T Consensus 10 ~~~~~l~~isl~i~~g~----iigI~G~~GsGKS-------Tl~k~L~~~l----G~~~~~--------~~~~~i~~v~~ 66 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPF----LIGVSGGTASGKS-------TVCEKIMELL----GQNEVE--------QRQRKVVILSQ 66 (245)
T ss_dssp -------------CCSE----EEEEECSTTSSHH-------HHHHHHHHHH----TGGGSC--------GGGCSEEEEEG
T ss_pred CCceeecceeccCCCCE----EEEEECCCCCCHH-------HHHHHHHHHh----chhccc--------ccCCceEEEeC
Confidence 45689999999999999 7889999999999 8888887754 444443 34567999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCC--ChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGV--KSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
+. +++.+|+.+++.+.......... ...+.+.+.++.+ .+..+.++..||+||+||+.+ ++++.+|+++|+|||
T Consensus 67 d~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 67 DR-FYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNI--VEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp GG-GBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred Cc-CccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHHH--HCCCCeecccccccccCccCc-eEEecCCCEEEEeCc
Confidence 84 77789999988764332222111 1223445555543 455677889999999999988 688999999999999
Q ss_pred CCCCC
Q psy860 169 FSSQN 173 (178)
Q Consensus 169 t~gLD 173 (178)
....|
T Consensus 143 ~~~~~ 147 (245)
T 2jeo_A 143 LVFYS 147 (245)
T ss_dssp TTTTS
T ss_pred ccccc
Confidence 87765
No 78
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.74 E-value=7.1e-19 Score=147.11 Aligned_cols=42 Identities=31% Similarity=0.373 Sum_probs=38.9
Q ss_pred cCcCCCCChHHHHHHHHHHHHh------CCCCeEEeeCCCCCCCCCCC
Q psy860 136 HRVSGRYSGGNKRKLSTAMALI------GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 136 ~~~~~~LSgGqkQRv~IAraL~------~~P~~lllDEPt~gLD~~~~ 177 (178)
++++.+|||||||||+||+||+ ++|++|||||||+||||.++
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~ 321 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENK 321 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHH
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHH
Confidence 5788999999999999999999 79999999999999998653
No 79
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.69 E-value=2.7e-18 Score=141.85 Aligned_cols=92 Identities=13% Similarity=-0.014 Sum_probs=77.1
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
+++++|+.+++|+ ..+|.|+||+||| |+++.+.++.+|++|.+.+++.+.......++.++++++
T Consensus 160 ~l~~l~~~i~~g~----~v~i~G~~GsGKT-------Tll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~g---- 224 (330)
T 2pt7_A 160 AISAIKDGIAIGK----NVIVCGGTGSGKT-------TYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFG---- 224 (330)
T ss_dssp HHHHHHHHHHHTC----CEEEEESTTSCHH-------HHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECB----
T ss_pred HHhhhhhhccCCC----EEEEECCCCCCHH-------HHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeC----
Confidence 7899999999999 7889999999999 999999999999999999988642221112333444320
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
|||+||++||+||.++|+++++||||+
T Consensus 225 -------------------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 225 -------------------------------------------------GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp -------------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred -------------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 899999999999999999999999997
No 80
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.67 E-value=4.4e-17 Score=149.49 Aligned_cols=105 Identities=17% Similarity=0.062 Sum_probs=75.2
Q ss_pred hhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCC---------hhHHHHHH
Q psy860 55 GSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVK---------SGPIIDYW 125 (178)
Q Consensus 55 ~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~---------~~~~~~~~ 125 (178)
.|.-+.+.|+++.+.++|+++.+.. .+++.+++.++.... ....+ ..+...+.
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i~~~~-----------------~~~v~~~l~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 447 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNIHEFT-----------------ELSISEELEFLKNLN-LTEREREIVGELLKEIEKRLEF 447 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEHHHHH-----------------HSBHHHHHHHHHSCC-CCTTTTTTHHHHHHHHHHHHHH
T ss_pred hcccccCChHhcCcEECCccHHHhh-----------------hCCHHHHHHHHHhcc-CcHHHHHHHHhhHHHHHHHHHH
Confidence 3444557889999999998875542 245555555432221 11111 11234457
Q ss_pred HHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCCC--eEEeeCCCCCCCCCCC
Q psy860 126 IDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQKLPFSSQNLYNT 177 (178)
Q Consensus 126 l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P~--~lllDEPt~gLD~~~~ 177 (178)
+..+|+... .++++.+|||||||||.|||||+++|+ +|||||||+||||..+
T Consensus 448 L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~ 502 (916)
T 3pih_A 448 LVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDT 502 (916)
T ss_dssp HHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGH
T ss_pred HHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHH
Confidence 788999754 689999999999999999999999887 9999999999999763
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.64 E-value=4e-21 Score=148.35 Aligned_cols=137 Identities=12% Similarity=0.054 Sum_probs=84.4
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc-H-HhhccceE
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH-L-FQYLSGIG 86 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~-~-~~~~~~ig 86 (178)
+.|.+++++| .+|++|| +.+|+|+|||||| ||++++.|+.+. +.+++..... . ...+++++
T Consensus 5 ~~~~~~~~~~--~~i~~Ge----i~~l~GpnGsGKS-------TLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~ 67 (207)
T 1znw_A 5 GPDTKPTARG--QPAAVGR----VVVLSGPSAVGKS-------TVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVD 67 (207)
T ss_dssp ----------------CCC----EEEEECSTTSSHH-------HHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTT
T ss_pred CCCCCcCCCC--CCCCCCC----EEEEECCCCCCHH-------HHHHHHHhhCCc----eEEcccccccCCcccccCCCe
Confidence 4556789999 7999999 8889999999999 999999998852 2222211110 1 12356899
Q ss_pred EecCCCCCCCCCCHHHHHHHH----H--HhcCCCCCChhHHHHHH------HHHcCCCccccCcCCCCChHHHHHHHHHH
Q psy860 87 YCPQFNGINEHLTAQEMLECF----S--ALRGIPGVKSGPIIDYW------IDLLGLTEYRHRVSGRYSGGNKRKLSTAM 154 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~----~--~~~~~~~~~~~~~~~~~------l~~~~L~~~~~~~~~~LSgGqkQRv~IAr 154 (178)
|+||++.+++.+++.+++..+ . ..++.+..+.++++.+. ++.+++.+..++++.+||
T Consensus 68 ~~~q~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS----------- 136 (207)
T 1znw_A 68 YHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT----------- 136 (207)
T ss_dssp BEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------
T ss_pred eEecCHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------
Confidence 999998776666666654311 1 11222222233444444 566677677788888898
Q ss_pred HHhCCCCeEEeeCCCCCCC
Q psy860 155 ALIGDRDDGFQKLPFSSQN 173 (178)
Q Consensus 155 aL~~~P~~lllDEPt~gLD 173 (178)
+|+.+|++++|||||+++|
T Consensus 137 ~l~~~p~~~~LDep~~~l~ 155 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRG 155 (207)
T ss_dssp EEEECSCHHHHHHHHHTTS
T ss_pred EEEECCCHHHHHHHHHhcC
Confidence 9999999999999999985
No 82
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.63 E-value=2.5e-18 Score=146.98 Aligned_cols=128 Identities=13% Similarity=0.043 Sum_probs=100.1
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccc---ccccH-------Hhhc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMT---NIMHL-------FQYL 82 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~---~~~~~-------~~~~ 82 (178)
..+++++ |+|.+|+ +.+|+|+||+||| ||++.+.|+.+|+.|.+.+.|+ ++... ..++
T Consensus 145 ~~vld~v-l~i~~Gq----~~~IvG~sGsGKS-------TLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~ 212 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQ----RMGLFAGSGVGKS-------VLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRA 212 (438)
T ss_dssp CHHHHHH-SCCBTTC----EEEEEECTTSSHH-------HHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHH
T ss_pred ceEEeee-EEecCCC----EEEEECCCCCCHH-------HHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccC
Confidence 3799999 9999999 8889999999999 9999999999999999999998 55442 2356
Q ss_pred cceEEecCC-CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC
Q psy860 83 SGIGYCPQF-NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161 (178)
Q Consensus 83 ~~ig~v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~ 161 (178)
+.++|++|+ ..+++++++.+++.+...+...... .+....+ .+..||+|| |||+|| +.+|+
T Consensus 213 r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~-------------~v~~~ld-~l~~lS~g~-qrvslA---l~~p~ 274 (438)
T 2dpy_A 213 RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQ-------------HVLLIMD-SLTRYAMAQ-REIALA---IGEPP 274 (438)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTC-------------EEEEEEE-CHHHHHHHH-HHHHHH---TTCCC
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCC-------------CHHHHHH-hHHHHHHHH-HHHHHH---hCCCc
Confidence 789999995 5567788999998876543321100 0111122 256799999 999999 88998
Q ss_pred eEEeeCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYN 176 (178)
Q Consensus 162 ~lllDEPt~gLD~~~ 176 (178)
+ |+|||+..
T Consensus 275 ~------t~glD~~~ 283 (438)
T 2dpy_A 275 A------TKGYPPSV 283 (438)
T ss_dssp C------SSSCCTTH
T ss_pred c------cccCCHHH
Confidence 8 99999975
No 83
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.61 E-value=4.4e-16 Score=142.81 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHhcCCCC----------CChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--Ce
Q psy860 96 EHLTAQEMLECFSALRGIPG----------VKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--DD 162 (178)
Q Consensus 96 ~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~~ 162 (178)
..+||.|++.|+..+. ++. .+..+++ +.|+.+||... .++.+.+|||||||||.||++|+.+| ++
T Consensus 450 ~~ltV~e~~~f~e~l~-l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~l 527 (972)
T 2r6f_A 450 TAMSVTEALAFFDGLE-LTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL 527 (972)
T ss_dssp HTSBHHHHHHHHHHCC-CCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCE
T ss_pred hhCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCE
Confidence 4589999999865442 322 1223344 35888999864 79999999999999999999999985 99
Q ss_pred EEeeCCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYNT 177 (178)
Q Consensus 163 lllDEPt~gLD~~~~ 177 (178)
+||||||+||||..+
T Consensus 528 lILDEPTagLdp~~~ 542 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDN 542 (972)
T ss_dssp EEEECTTTTCCGGGH
T ss_pred EEEeCcccCCCHHHH
Confidence 999999999999753
No 84
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.58 E-value=4.2e-16 Score=114.94 Aligned_cols=43 Identities=21% Similarity=0.130 Sum_probs=39.2
Q ss_pred cccCcCCCCChHHHHHHHHH------HHHhCCCCeEEeeCCCCCCCCCC
Q psy860 134 YRHRVSGRYSGGNKRKLSTA------MALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 134 ~~~~~~~~LSgGqkQRv~IA------raL~~~P~~lllDEPt~gLD~~~ 176 (178)
..++++.+|||||||||+|| |||+.+|++++|||||+|||+.+
T Consensus 50 ~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~ 98 (148)
T 1f2t_B 50 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER 98 (148)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHH
T ss_pred cccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHH
Confidence 35788999999999999876 89999999999999999999865
No 85
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.57 E-value=2.3e-18 Score=140.52 Aligned_cols=134 Identities=18% Similarity=0.056 Sum_probs=71.6
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCcccccccccccccccHHhhccceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQNSLLMTNIMHLFQYLSGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~i~~~g~~~~~~~~~~~~ig~v~ 89 (178)
|...++++++|+| +|+|+||+||| ||++.+.+. ..|++| +.++|.++..... .+.+++++
T Consensus 9 ~~~~~l~~~~~~I----------~lvG~nG~GKS-------TLl~~L~g~~~~~~~g-i~~~g~~~~~t~~-~~~~~~~~ 69 (301)
T 2qnr_A 9 HRKSVKKGFEFTL----------MVVGESGLGKS-------TLINSLFLTDLYPERV-ISGAAEKIERTVQ-IEASTVEI 69 (301)
T ss_dssp ---------CEEE----------EEEEETTSSHH-------HHHHHHHC--------------------------CEEEE
T ss_pred CCEEEEcCCCEEE----------EEECCCCCCHH-------HHHHHHhCCCccCCCC-cccCCcccCCcce-EeeEEEEe
Confidence 4457999999999 59999999999 999999887 778888 7777766543222 34689999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|...+...++++|+..+...... ....+..+..+ .+..++++.++|||||||+.+|||++ ++++||||
T Consensus 70 q~~~~~~~ltv~Dt~g~~~~~~~--~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt 137 (301)
T 2qnr_A 70 EERGVKLRLTVVDTPGYGDAINC--RDCFKTIISYI------DEQFERYLHDESGLNRRHIIDNRVHC----CFYFISPF 137 (301)
T ss_dssp C---CCEEEEEEEEC-------------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEECSS
T ss_pred cCCCcccCcchhhhhhhhhhcCc--HHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeecCc
Confidence 98887788888887665332211 01112222222 23346788899999999999999886 99999999
Q ss_pred CC-CCCC
Q psy860 170 SS-QNLY 175 (178)
Q Consensus 170 ~g-LD~~ 175 (178)
++ ||+.
T Consensus 138 ~~~Ld~~ 144 (301)
T 2qnr_A 138 GHGLKPL 144 (301)
T ss_dssp SSSCCHH
T ss_pred ccCCCHH
Confidence 84 9974
No 86
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.56 E-value=3e-15 Score=136.36 Aligned_cols=59 Identities=20% Similarity=0.094 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCCC--CeEEeeCCCCCCCCCCC
Q psy860 118 SGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGDR--DDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 118 ~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~P--~~lllDEPt~gLD~~~~ 177 (178)
..++++ .++.+||... .++.+.+|||||||||.||++|+.+| +++||||||++|||..+
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~ 417 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADT 417 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGH
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHH
Confidence 344555 5788999865 79999999999999999999999999 59999999999999753
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.52 E-value=1e-16 Score=131.04 Aligned_cols=125 Identities=15% Similarity=0.128 Sum_probs=91.9
Q ss_pred HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhh--ccceEEecCCCCCCC
Q psy860 25 AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQY--LSGIGYCPQFNGINE 96 (178)
Q Consensus 25 ~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~--~~~ig~v~Q~~~l~~ 96 (178)
.|+ +.+|+|+|||||| |+++++.++.+|++|.+.+.+.++.. ...+ +.+++|++|++.+++
T Consensus 101 ~g~----vi~lvG~nGsGKT-------Tll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p 169 (304)
T 1rj9_A 101 KGR----VVLVVGVNGVGKT-------TTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS 169 (304)
T ss_dssp SSS----EEEEECSTTSSHH-------HHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH
T ss_pred CCe----EEEEECCCCCcHH-------HHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH
Confidence 567 8889999999999 99999999999999999999988643 2222 357999999998888
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC--eEEeeCCCCCCC
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQKLPFSSQN 173 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~--~lllDEPt~gLD 173 (178)
..++.+++.+.... +. + . .+++..|..+..++.+.+|| +||++||||++.+|+ ++.|| |+++.+
T Consensus 170 ~~~v~~~v~~~~~~-~~---d-~----~llDt~G~~~~~~~~~~eLs---~~r~~iaRal~~~P~~~lLvLD-a~t~~~ 235 (304)
T 1rj9_A 170 AALAYDAVQAMKAR-GY---D-L----LFVDTAGRLHTKHNLMEELK---KVKRAIAKADPEEPKEVWLVLD-AVTGQN 235 (304)
T ss_dssp HHHHHHHHHHHHHH-TC---S-E----EEECCCCCCTTCHHHHHHHH---HHHHHHHHHCTTCCSEEEEEEE-TTBCTH
T ss_pred HHHHHHHHHHHHhC-CC---C-E----EEecCCCCCCchHHHHHHHH---HHHHHHHHhhcCCCCeEEEEEc-HHHHHH
Confidence 88999998764321 11 0 0 02233454444444444454 899999999999999 66777 666654
No 88
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.51 E-value=5.1e-15 Score=128.86 Aligned_cols=116 Identities=6% Similarity=-0.064 Sum_probs=84.5
Q ss_pred ccch-hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCC
Q psy860 16 FNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGI 94 (178)
Q Consensus 16 ~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l 94 (178)
|+.+ +..+++|+ +.+|.|+||+||| ||+..+++..+++ |.. .+.+++|++.
T Consensus 270 ld~vL~g~i~~G~----i~~i~G~~GsGKS-------TLl~~l~g~~~~~-G~~---------------vi~~~~ee~~- 321 (525)
T 1tf7_A 270 LDEMCGGGFFKDS----IILATGATGTGKT-------LLVSRFVENACAN-KER---------------AILFAYEESR- 321 (525)
T ss_dssp HHHHTTSSEESSC----EEEEEECTTSSHH-------HHHHHHHHHHHTT-TCC---------------EEEEESSSCH-
T ss_pred HHHHhCCCCCCCc----EEEEEeCCCCCHH-------HHHHHHHHHHHhC-CCC---------------EEEEEEeCCH-
Confidence 3443 55888999 7789999999999 9999998887664 331 2566777641
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 95 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
..+.++. ...+.. +++ +...++....+..+.+||+||+||+++|+++..+|++|++| ||++||+
T Consensus 322 ---~~l~~~~----~~~g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~ 385 (525)
T 1tf7_A 322 ---AQLLRNA----YSWGMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALAR 385 (525)
T ss_dssp ---HHHHHHH----HTTSCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTS
T ss_pred ---HHHHHHH----HHcCCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHh
Confidence 1122221 111211 222 33467777788889999999999999999999999999999 9999998
Q ss_pred C
Q psy860 175 Y 175 (178)
Q Consensus 175 ~ 175 (178)
.
T Consensus 386 ~ 386 (525)
T 1tf7_A 386 G 386 (525)
T ss_dssp S
T ss_pred h
Confidence 6
No 89
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.50 E-value=9.4e-16 Score=123.91 Aligned_cols=136 Identities=9% Similarity=-0.141 Sum_probs=86.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc-cccccccccccHHhhccceEEecCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA-QNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g-~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
++|+++++.+++|+ +.+|.|+||+||| |++..+++...++.| .+.+.+.+.. ..++++++..+++..
T Consensus 23 ~~Ld~i~~~l~~G~----~~~i~G~~G~GKT-------Tl~~~ia~~~~~~~G~~v~~~~~e~~-~~~~~~r~~~~~~~~ 90 (296)
T 1cr0_A 23 TGINDKTLGARGGE----VIMVTSGSGMGKS-------TFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLIGLHNRV 90 (296)
T ss_dssp TTHHHHHCSBCTTC----EEEEEESTTSSHH-------HHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCCe----EEEEEeCCCCCHH-------HHHHHHHHHHHHHcCCeEEEEeCcCC-HHHHHHHHHHHHcCC
Confidence 68999999999999 8889999999999 999999999888877 5644443332 233434444444433
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHH-HHHHHHHHHHhCCCCeEEeeCCCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGN-KRKLSTAMALIGDRDDGFQKLPFSS 171 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq-kQRv~IAraL~~~P~~lllDEPt~g 171 (178)
.+ ++.+++.... . ...+..+.++++++..++ ..+..+.++|.++ +||+. |+++..+|+++|+||||+.
T Consensus 91 ~~----~~~~~l~~~~-~---~~~~~~~~~~~~l~~~~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 91 RL----RQSDSLKREI-I---ENGKFDQWFDELFGNDTF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp CG----GGCHHHHHHH-H---HHTHHHHHHHHHHSSSCE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred Ch----hhccccccCC-C---CHHHHHHHHHHHhccCCE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 21 2223332211 1 111223334444433233 1233456789998 66776 9999999999999999994
Q ss_pred C
Q psy860 172 Q 172 (178)
Q Consensus 172 L 172 (178)
+
T Consensus 160 ~ 160 (296)
T 1cr0_A 160 V 160 (296)
T ss_dssp -
T ss_pred C
Confidence 4
No 90
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.49 E-value=6.5e-15 Score=135.50 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHHhcCCCC----------CChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHHHHHHHHHHhCC--CC
Q psy860 95 NEHLTAQEMLECFSALRGIPG----------VKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKRKLSTAMALIGD--RD 161 (178)
Q Consensus 95 ~~~ltv~e~l~~~~~~~~~~~----------~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~IAraL~~~--P~ 161 (178)
+..+||.|.+.|+..+ +.+. .+..+++ +.|+.+||... .++.+.+|||||||||.||++|+.+ |+
T Consensus 466 ~~~ltV~e~l~f~enl-~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~ 543 (993)
T 2ygr_A 466 VCELSIADCADFLNAL-TLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGV 543 (993)
T ss_dssp SSHHHHHHHHHTTTTT-TSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred HhhCCHHHHHHHHHhc-CCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCc
Confidence 3457888888774322 2222 1223343 35788999764 7999999999999999999999999 59
Q ss_pred eEEeeCCCCCCCCCC
Q psy860 162 DGFQKLPFSSQNLYN 176 (178)
Q Consensus 162 ~lllDEPt~gLD~~~ 176 (178)
++||||||+||||..
T Consensus 544 llILDEPTagLdp~~ 558 (993)
T 2ygr_A 544 LYVLDEPSIGLHQRD 558 (993)
T ss_dssp EEEEECTTTTCCHHH
T ss_pred EEEEeCcccCCCHHH
Confidence 999999999999864
No 91
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.48 E-value=2.6e-15 Score=120.20 Aligned_cols=102 Identities=14% Similarity=0.068 Sum_probs=76.0
Q ss_pred hccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-cccccccccccccHHhhccceE
Q psy860 8 SGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-AAQNSLLMTNIMHLFQYLSGIG 86 (178)
Q Consensus 8 ~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-~g~i~~~g~~~~~~~~~~~~ig 86 (178)
+..|+.++|+++| +++|+ +.+|.|+|||||| |+++.+.++.+|+ +|.|.+++.++ .
T Consensus 9 ~~l~~~~vl~~i~--i~~g~----~v~i~Gp~GsGKS-------Tll~~l~g~~~~~~~G~I~~~g~~i----------~ 65 (261)
T 2eyu_A 9 KKLGLPDKVLELC--HRKMG----LILVTGPTGSGKS-------TTIASMIDYINQTKSYHIITIEDPI----------E 65 (261)
T ss_dssp GGSSCCTHHHHGG--GCSSE----EEEEECSTTCSHH-------HHHHHHHHHHHHHCCCEEEEEESSC----------C
T ss_pred HHCCCHHHHHHHh--hCCCC----EEEEECCCCccHH-------HHHHHHHHhCCCCCCCEEEEcCCcc----------e
Confidence 3456668999999 89999 8889999999999 9999999999888 99998888754 3
Q ss_pred EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 87 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 87 ~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
|++|+..-+ . . + +.+++.. ..| |++||+||.++|+++++|
T Consensus 66 ~~~~~~~~~--------------v---~--q---------~~~gl~~------~~l------~~~la~aL~~~p~illlD 105 (261)
T 2eyu_A 66 YVFKHKKSI--------------V---N--Q---------REVGEDT------KSF------ADALRAALREDPDVIFVG 105 (261)
T ss_dssp SCCCCSSSE--------------E---E--E---------EEBTTTB------SCH------HHHHHHHHHHCCSEEEES
T ss_pred eecCCccee--------------e---e--H---------HHhCCCH------HHH------HHHHHHHHhhCCCEEEeC
Confidence 444432100 0 0 0 0233321 122 899999999999999999
Q ss_pred CCCCCCCCC
Q psy860 167 LPFSSQNLY 175 (178)
Q Consensus 167 EPt~gLD~~ 175 (178)
||| |+.
T Consensus 106 Ep~---D~~ 111 (261)
T 2eyu_A 106 EMR---DLE 111 (261)
T ss_dssp CCC---SHH
T ss_pred CCC---CHH
Confidence 999 764
No 92
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.48 E-value=2.3e-17 Score=126.81 Aligned_cols=114 Identities=11% Similarity=-0.073 Sum_probs=90.1
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCC--CCCCHHHHHHHHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGIN--EHLTAQEMLECFSA 109 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~--~~ltv~e~l~~~~~ 109 (178)
+.+|.|+|||||| |+++.+.++.+| .++|++|++.++ ..+++.++..+.
T Consensus 8 ~i~i~G~~GsGKS-------Tl~~~l~~~~~~--------------------~i~~v~~d~~~~~~~~~~~~~~~~~~-- 58 (211)
T 3asz_A 8 VIGIAGGTASGKT-------TLAQALARTLGE--------------------RVALLPMDHYYKDLGHLPLEERLRVN-- 58 (211)
T ss_dssp EEEEEESTTSSHH-------HHHHHHHHHHGG--------------------GEEEEEGGGCBCCCTTSCHHHHHHSC--
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHhCC--------------------CeEEEecCccccCcccccHHHhcCCC--
Confidence 6789999999999 888888887543 388999987665 467888775432
Q ss_pred hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHH----HHHHHHHHHHhCCCCeEEeeCCCCC-------CCCC
Q psy860 110 LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGN----KRKLSTAMALIGDRDDGFQKLPFSS-------QNLY 175 (178)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq----kQRv~IAraL~~~P~~lllDEPt~g-------LD~~ 175 (178)
.+.+.....+++.++++.+++.+..++++.++|+|+ +||+.+|++++.+|.++++||||++ ||+.
T Consensus 59 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~ 134 (211)
T 3asz_A 59 -YDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDAD 134 (211)
T ss_dssp -TTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECC
T ss_pred -CCChhhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCC
Confidence 122222345667888899998877788889999997 4788999999999999999999999 7864
No 93
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.45 E-value=5.1e-16 Score=144.16 Aligned_cols=109 Identities=11% Similarity=-0.020 Sum_probs=77.8
Q ss_pred cccccchhhhccH-------HHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccce
Q psy860 13 CPQFNGINEHLTA-------QEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGI 85 (178)
Q Consensus 13 ~~~~~~v~~~~~~-------g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~i 85 (178)
..+++||+|.++. |+ +.+|.||||+||| |+++.+ |+..+- .++
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~----i~~ItGpNgsGKS-------TlLr~i-Gl~~~~------------------aqi 818 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAY----CVLVTGPNMGGKS-------TLMRQA-GLLAVM------------------AQM 818 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCC----EEEEECCTTSSHH-------HHHHHH-HHHHHH------------------HTT
T ss_pred ceEeeeeeeccccccccCCCCc----EEEEECCCCCChH-------HHHHHH-HHHHHH------------------hhe
Confidence 5799999999987 88 8889999999999 999988 776431 145
Q ss_pred E-EecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEE
Q psy860 86 G-YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGF 164 (178)
Q Consensus 86 g-~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ll 164 (178)
| ||||++. .+++.+++. ..+|+.+...+..+++|+++++ +++|++++++|+++|
T Consensus 819 G~~Vpq~~~---~l~v~d~I~---------------------~rig~~d~~~~~~stf~~em~~-~a~al~la~~~sLlL 873 (1022)
T 2o8b_B 819 GCYVPAEVC---RLTPIDRVF---------------------TRLGASDRIMSGESTFFVELSE-TASILMHATAHSLVL 873 (1022)
T ss_dssp TCCEESSEE---EECCCSBEE---------------------EECC---------CHHHHHHHH-HHHHHHHCCTTCEEE
T ss_pred eEEeccCcC---CCCHHHHHH---------------------HHcCCHHHHhhchhhhHHHHHH-HHHHHHhCCCCcEEE
Confidence 6 9999752 334433321 1123333333445678888876 999999999999999
Q ss_pred eeCCCCCCCCCC
Q psy860 165 QKLPFSSQNLYN 176 (178)
Q Consensus 165 lDEPt~gLD~~~ 176 (178)
|||||+|+|+..
T Consensus 874 LDEp~~Gtd~~d 885 (1022)
T 2o8b_B 874 VDELGRGTATFD 885 (1022)
T ss_dssp EECTTTTSCHHH
T ss_pred EECCCCCCChHH
Confidence 999999999753
No 94
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.45 E-value=3.2e-15 Score=135.26 Aligned_cols=104 Identities=13% Similarity=-0.063 Sum_probs=78.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-cccccccccccccccHHhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
..+++||||+ |+ +.+|.||||+||| |+++.+.++.. ++.|.+.- ..+..+++++|
T Consensus 566 ~~vl~disl~---g~----i~~I~GpNGsGKS-------TlLr~iagl~~~~~~G~~vp---------a~~~~i~~v~~- 621 (765)
T 1ewq_A 566 EFVPNDLEMA---HE----LVLITGPNMAGKS-------TFLRQTALIALLAQVGSFVP---------AEEAHLPLFDG- 621 (765)
T ss_dssp CCCCEEEEES---SC----EEEEESCSSSSHH-------HHHHHHHHHHHHHTTTCCBS---------SSEEEECCCSE-
T ss_pred ceEeeeccCC---Cc----EEEEECCCCCChH-------HHHHHHHhhhhhcccCceee---------hhccceeeHHH-
Confidence 5789999999 88 8889999999999 99999988853 66666421 11335777776
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH--hCCCCeEEeeCC-
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL--IGDRDDGFQKLP- 168 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL--~~~P~~lllDEP- 168 (178)
++..+++.|++.. .+|+|++|++.+|+++ +++|+++|||||
T Consensus 622 --i~~~~~~~d~l~~----------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpg 665 (765)
T 1ewq_A 622 --IYTRIGASDDLAG----------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVG 665 (765)
T ss_dssp --EEEECCC----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTT
T ss_pred --hhccCCHHHHHHh----------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCC
Confidence 4555666665421 3689999999999999 999999999999
Q ss_pred --CCCCCCCC
Q psy860 169 --FSSQNLYN 176 (178)
Q Consensus 169 --t~gLD~~~ 176 (178)
|++||+.+
T Consensus 666 rGTs~lD~~~ 675 (765)
T 1ewq_A 666 RGTSSLDGVA 675 (765)
T ss_dssp TTSCHHHHHH
T ss_pred CCCCCcCHHH
Confidence 99999753
No 95
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.44 E-value=9.4e-16 Score=127.83 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=89.6
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-ccccccccc-ccccccHHhhccceEEecCCCC
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLL-MTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~-g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
++++++.+ .|+ +.+++|+||+||| ||++.+.|... ++.|.+.++ |.... ...++.++++||+..
T Consensus 206 l~~L~~~~-~G~----~~~lvG~sG~GKS-------TLln~L~g~~~~~~~G~I~~~~G~g~~--tt~~~~i~~v~q~~~ 271 (358)
T 2rcn_A 206 LKPLEEAL-TGR----ISIFAGQSGVGKS-------SLLNALLGLQNEILTNDVSNVSGLGQH--TTTAARLYHFPHGGD 271 (358)
T ss_dssp HHHHHHHH-TTS----EEEEECCTTSSHH-------HHHHHHHCCSSCCCCC---------------CCCEEEECTTSCE
T ss_pred HHHHHHhc-CCC----EEEEECCCCccHH-------HHHHHHhccccccccCCccccCCCCcc--ceEEEEEEEECCCCE
Confidence 56777765 466 7889999999999 99999999998 999999876 54432 233457999999988
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR 160 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P 160 (178)
+++..+++++. ....+..+..+.+.++++.+++.++.++.+.++| ||+||++||++++...
T Consensus 272 l~dtpgv~e~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~~~ 332 (358)
T 2rcn_A 272 VIDSPGVREFG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIAET 332 (358)
T ss_dssp EEECHHHHTCC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSCHH
T ss_pred ecCcccHHHhh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCCHH
Confidence 88888888731 1222222333456678888999999999999999 9999999999987543
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.43 E-value=1.7e-17 Score=144.47 Aligned_cols=123 Identities=11% Similarity=-0.027 Sum_probs=86.3
Q ss_pred cccccchhh-hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhh--hhccCCccccccccccccccc-HHhhccceEEe
Q psy860 13 CPQFNGINE-HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGS--AIRFSPFQAAQNSLLMTNIMH-LFQYLSGIGYC 88 (178)
Q Consensus 13 ~~~~~~v~~-~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~--~~~~~~~~~g~i~~~g~~~~~-~~~~~~~ig~v 88 (178)
.++|++||+ .|++|| +.+|+|+|||||| ||++. +.|+.+|++|.++++|++... ..+.++.+||+
T Consensus 25 ~~~Ld~i~~G~i~~Ge----~~~l~G~nGsGKS-------TL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~ 93 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGR----STLVSGTSGTGKT-------LFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWD 93 (525)
T ss_dssp CTTHHHHTTSSEETTS----EEEEEESTTSSHH-------HHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCC
T ss_pred chhHHHhcCCCCCCCe----EEEEEcCCCCCHH-------HHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCC
Confidence 489999999 999999 8889999999999 99998 679988899999999987432 33455679999
Q ss_pred cCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 89 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 89 ~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
+|++...+++ .+ ....... .+.++++.+++.+..++.+.+||+| +|+++++|||
T Consensus 94 ~q~~~~~~~l------~~---~~~~~~~----~~~~~l~~~~l~~~~~~~~~~LS~g-------------~~~~lilDe~ 147 (525)
T 1tf7_A 94 LAKLVDEGKL------FI---LDASPDP----EGQEVVGGFDLSALIERINYAIQKY-------------RARRVSIDSV 147 (525)
T ss_dssp HHHHHHTTSE------EE---EECCCCS----SCCSCCSSHHHHHHHHHHHHHHHHH-------------TCSEEEEECS
T ss_pred hHHhhccCcE------EE---EecCccc----chhhhhcccCHHHHHHHHHHHHHHc-------------CCCEEEECCH
Confidence 9975422110 00 0000000 1112334455555566667777776 4889999999
Q ss_pred CCCC
Q psy860 169 FSSQ 172 (178)
Q Consensus 169 t~gL 172 (178)
|+.+
T Consensus 148 t~~~ 151 (525)
T 1tf7_A 148 TSVF 151 (525)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 9854
No 97
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.43 E-value=1.9e-15 Score=138.77 Aligned_cols=110 Identities=6% Similarity=-0.088 Sum_probs=71.3
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-cccccccccccccccHHhhccceEEecC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
...+++||||+++.|+ +.+|+||||+||| |+++.+.++.. ++. -.++|.
T Consensus 659 ~~~V~ndvsl~~~~g~----i~~ItGPNGaGKS-------TlLr~i~~i~~~aq~-------------------g~~vpa 708 (918)
T 3thx_B 659 DQYVPNNTDLSEDSER----VMIITGPNMGGKS-------SYIKQVALITIMAQI-------------------GSYVPA 708 (918)
T ss_dssp SSSCCEEEEECTTSCC----EEEEESCCCHHHH-------HHHHHHHHHHHHHHH-------------------TCCBSS
T ss_pred CceecccccccCCCCe----EEEEECCCCCchH-------HHHHHHHHHHHHhhc-------------------Cccccc
Confidence 3578999999999999 8889999999999 88887654311 111 112332
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
....... +++++..+++.+...+..+++|+||+|++.|+++ +++|+++||||||+
T Consensus 709 ~~~~i~~------------------------~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~ 763 (918)
T 3thx_B 709 EEATIGI------------------------VDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGR 763 (918)
T ss_dssp SEEEEEC------------------------CSEEEEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTT
T ss_pred hhhhhhH------------------------HHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCC
Confidence 2100000 0011223344444556678899999999999999 89999999999999
Q ss_pred CCCCCC
Q psy860 171 SQNLYN 176 (178)
Q Consensus 171 gLD~~~ 176 (178)
||||..
T Consensus 764 GlD~~~ 769 (918)
T 3thx_B 764 GTSTHD 769 (918)
T ss_dssp TSCHHH
T ss_pred CCCHHH
Confidence 999853
No 98
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.42 E-value=4.5e-16 Score=122.76 Aligned_cols=127 Identities=10% Similarity=-0.012 Sum_probs=89.2
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhh---ccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAI---RFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFS 108 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~---~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~ 108 (178)
+.+|+|+|||||| |+++.+. |+..++.|.+..++.+... .....+.+++|+..+++..++.+++....
T Consensus 29 ~i~l~G~~GsGKS-------Tl~k~La~~lg~~~~~~G~i~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~v~~~l~~~l 99 (246)
T 2bbw_A 29 RAVILGPPGSGKG-------TVCQRIAQNFGLQHLSSGHFLRENIKAST--EVGEMAKQYIEKSLLVPDHVITRLMMSEL 99 (246)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHHCCCCEEHHHHHHHHHHTTC--HHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHhCCeEecHHHHHHHHHhcCC--hHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7889999999999 9999998 9999999999877654321 12234556677777788888998887643
Q ss_pred H--------hcCCCCCChhHHHHHHHH--HcC------------CCccccCcCCCCChHHHHHHHHHHHH-hCCCCeEEe
Q psy860 109 A--------LRGIPGVKSGPIIDYWID--LLG------------LTEYRHRVSGRYSGGNKRKLSTAMAL-IGDRDDGFQ 165 (178)
Q Consensus 109 ~--------~~~~~~~~~~~~~~~~l~--~~~------------L~~~~~~~~~~LSgGqkQRv~IAraL-~~~P~~lll 165 (178)
. ..+.+.. ...++.+.+ .++ +....++++.+||| || +|+ +.+|+++++
T Consensus 100 ~~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lll 170 (246)
T 2bbw_A 100 ENRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGI 170 (246)
T ss_dssp HTCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTB
T ss_pred HhcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccc
Confidence 2 1122211 222333322 222 23345778889999 66 788 999999999
Q ss_pred e----CCCCCCCCCC
Q psy860 166 K----LPFSSQNLYN 176 (178)
Q Consensus 166 D----EPt~gLD~~~ 176 (178)
| |||++||+.+
T Consensus 171 D~~~~EP~~~ld~~~ 185 (246)
T 2bbw_A 171 DDVTGEPLVQQEDDK 185 (246)
T ss_dssp CTTTCCBCBCCGGGS
T ss_pred ccccccccccCCCCc
Confidence 9 9999999865
No 99
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.41 E-value=3.4e-15 Score=113.95 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=86.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC-----CcccccccccccccccHHhhccceEEe
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS-----PFQAAQNSLLMTNIMHLFQYLSGIGYC 88 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~-----~~~~g~i~~~g~~~~~~~~~~~~ig~v 88 (178)
+++++ |.+..|+ ..+++|++|+||| ||++.+.+.. .|+.|.....+.-. +...+-+
T Consensus 16 ~~l~~--~~~~~~~----~v~lvG~~g~GKS-------TLl~~l~g~~~~~~~~~~~G~~~~~~~~~-----~~~~~~l- 76 (210)
T 1pui_A 16 PDIRH--LPSDTGI----EVAFAGRSNAGKS-------SALNTLTNQKSLARTSKTPGRTQLINLFE-----VADGKRL- 76 (210)
T ss_dssp SSGGG--SSCSCSE----EEEEEECTTSSHH-------HHHTTTCCC-------------CCEEEEE-----EETTEEE-
T ss_pred CCHhH--CCCCCCc----EEEEECCCCCCHH-------HHHHHHhCCCccccccCCCccceeeEEEE-----ecCCEEE-
Confidence 67887 8899998 7889999999999 9999999887 77878765432100 0001111
Q ss_pred cCCCCCCC----CCC---HHHHHHHHHHh-c---------CC--CCCChhHHHHHHHHHcCCCcc-ccCcCCCCChHHHH
Q psy860 89 PQFNGINE----HLT---AQEMLECFSAL-R---------GI--PGVKSGPIIDYWIDLLGLTEY-RHRVSGRYSGGNKR 148 (178)
Q Consensus 89 ~Q~~~l~~----~lt---v~e~l~~~~~~-~---------~~--~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQ 148 (178)
.+.++... ... .+..+..+... . .. ......+.+.++++..++... ...++..+|+||+|
T Consensus 77 ~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~ 156 (210)
T 1pui_A 77 VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK 156 (210)
T ss_dssp EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH
T ss_pred EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH
Confidence 11122110 000 11112222110 0 00 111122345566777787643 36778899999999
Q ss_pred H-HHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 149 K-LSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 149 R-v~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
| +..+++++.+|+.+++|||||++|+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 157 AQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp HHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred HHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 9 8999999999999999999999998753
No 100
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.40 E-value=6.4e-14 Score=105.74 Aligned_cols=43 Identities=14% Similarity=-0.093 Sum_probs=37.6
Q ss_pred cccCcCCCCChHHHHHHHHHHHHhC----CCCeEEeeCCCCCCCCCC
Q psy860 134 YRHRVSGRYSGGNKRKLSTAMALIG----DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 134 ~~~~~~~~LSgGqkQRv~IAraL~~----~P~~lllDEPt~gLD~~~ 176 (178)
...+.+..||||||||++||++|+. .|+++||||||+|||+.+
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~ 103 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDAN 103 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHH
Confidence 3456788999999999999999974 469999999999999865
No 101
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=2.2e-15 Score=127.99 Aligned_cols=130 Identities=11% Similarity=-0.021 Sum_probs=76.6
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH-hhccceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF-QYLSGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~-~~~~~ig~v~ 89 (178)
|...+++++||+| +|+|+||+||| ||++.+.|...++.|. ++..+.... ..++.+++++
T Consensus 22 ~~~~vl~~vsf~I----------~lvG~sGaGKS-------TLln~L~g~~~~~~~~---~~~~~~~~~t~~~~~i~~v~ 81 (418)
T 2qag_C 22 YRKSVKRGFEFTL----------MVVGESGLGKS-------TLINSLFLTDLYSPEY---PGPSHRIKKTVQVEQSKVLI 81 (418)
T ss_dssp TTTTCC-CCCEEE----------EEECCTTSSHH-------HHHHHHTTCCCCCCCC---CSCC-----CCEEEEEECC-
T ss_pred CCEEEecCCCEEE----------EEECCCCCcHH-------HHHHHHhCCCCCCCCC---CCcccCCccceeeeeEEEEE
Confidence 4467999999998 59999999999 9999999987644431 111111111 1134689999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC---eEEee
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD---DGFQK 166 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~---~lllD 166 (178)
|...+++.+|+.|++.+...... ....+.+.+.++ ..++.+++||+.||||++.+|+ +|++|
T Consensus 82 q~~~~~~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ld 146 (418)
T 2qag_C 82 KEGGVQLLLTIVDTPGFGDAVDN---SNCWQPVIDYID------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFI 146 (418)
T ss_dssp -----CEEEEEEECC--------------CHHHHHHHH------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred ecCCcccceeeeechhhhhhccc---hhhHHHHHHHHH------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence 99888888899888766432211 111122222222 1355677889999999999999 99999
Q ss_pred CCC-CCCCCC
Q psy860 167 LPF-SSQNLY 175 (178)
Q Consensus 167 EPt-~gLD~~ 175 (178)
||| ++||+.
T Consensus 147 ePt~~~L~~~ 156 (418)
T 2qag_C 147 APSGHGLKPL 156 (418)
T ss_dssp CC-CCSCCHH
T ss_pred cCcccCCCHH
Confidence 999 699974
No 102
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.38 E-value=8.9e-15 Score=119.28 Aligned_cols=114 Identities=7% Similarity=-0.074 Sum_probs=84.3
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHHh-hc-cceEEecCCCCCC-----CCCCHH
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLFQ-YL-SGIGYCPQFNGIN-----EHLTAQ 101 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~~-~~-~~ig~v~Q~~~l~-----~~ltv~ 101 (178)
+.+++|+||+||| ||++.+. ..+|+.|+|.+ +|++.+...+ .+ +.+||++|.|.+. +++|+
T Consensus 167 i~~l~G~sG~GKS-------TLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 167 ICILAGPSGVGKS-------SILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp EEEEECSTTSSHH-------HHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred EEEEECCCCCCHH-------HHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 6789999999999 9999999 99999999999 8877654322 22 3699999998654 67889
Q ss_pred HHH--HHH------HHhcC-CCCCChhHHHHHHHHHcCCCc-cccCcCCCCChHHHHHHHHHH
Q psy860 102 EML--ECF------SALRG-IPGVKSGPIIDYWIDLLGLTE-YRHRVSGRYSGGNKRKLSTAM 154 (178)
Q Consensus 102 e~l--~~~------~~~~~-~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~LSgGqkQRv~IAr 154 (178)
+++ .|. ..+.+ ....+...++.++++.++|.+ ..++++..|||.+||++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776 332 12332 234455678999999999985 788999999999999999986
No 103
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.36 E-value=2.5e-14 Score=118.88 Aligned_cols=128 Identities=13% Similarity=0.031 Sum_probs=84.3
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH---------hhcc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF---------QYLS 83 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~---------~~~~ 83 (178)
..+++++ |.|.+|+ ..+|+|+||+||| ||+++++++.+|+.|.+.+.|++..... .+++
T Consensus 59 ~~ald~l-l~i~~Gq----~~gIiG~nGaGKT-------TLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~ 126 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQ----RIGIFAGSGVGKS-------TLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSK 126 (347)
T ss_dssp CHHHHHH-SCEETTC----EEEEEECTTSSHH-------HHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTT
T ss_pred CEEEEee-eeecCCC----EEEEECCCCCCHH-------HHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhc
Confidence 3799999 9999999 8889999999999 9999999999999999988886532221 1344
Q ss_pred ceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
.+.+++|... +..+.+....... ...+++...+-. -..-..+..||+|| |||++| +.+|++
T Consensus 127 ~v~~~~~~~~-----~~~~r~~~~~~~~---------~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~ 188 (347)
T 2obl_A 127 CVLVVTTSDR-----PALERMKAAFTAT---------TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV 188 (347)
T ss_dssp EEEEEECTTS-----CHHHHHHHHHHHH---------HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC
T ss_pred eEEEEECCCC-----CHHHHHHHHHHHH---------HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc
Confidence 5777877531 2222221110000 001111110100 00014578899999 899999 688887
Q ss_pred EEeeCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYN 176 (178)
Q Consensus 163 lllDEPt~gLD~~~ 176 (178)
|+||||..
T Consensus 189 ------t~Gldp~~ 196 (347)
T 2obl_A 189 ------RGGFPPSV 196 (347)
T ss_dssp ------BTTBCHHH
T ss_pred ------ccCCCHHH
Confidence 99999864
No 104
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.35 E-value=3e-15 Score=114.47 Aligned_cols=115 Identities=10% Similarity=-0.109 Sum_probs=80.7
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALR 111 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 111 (178)
..+|+|+||+||| |+++.+.++.+ ++| +.++|....+....++.+||++|+. .... +++. ...
T Consensus 3 ~i~i~G~nG~GKT-------Tll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l~---~~~ 65 (189)
T 2i3b_A 3 HVFLTGPPGVGKT-------TLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPLS---RVG 65 (189)
T ss_dssp CEEEESCCSSCHH-------HHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEEE---ECC
T ss_pred EEEEECCCCChHH-------HHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehhh---ccc
Confidence 4679999999999 99999999988 889 9999987766666778899999974 1111 1110 000
Q ss_pred CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHH-HHHH---HHhCCCCeEEeeC--CCCCCCCC
Q psy860 112 GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKL-STAM---ALIGDRDDGFQKL--PFSSQNLY 175 (178)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv-~IAr---aL~~~P~~lllDE--Pt~gLD~~ 175 (178)
....+ ..-.+...++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+.
T Consensus 66 -~~~~~-----------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~ 123 (189)
T 2i3b_A 66 -LEPPP-----------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQL 123 (189)
T ss_dssp -CCCCS-----------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSH
T ss_pred -ccCCc-----------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHH
Confidence 00000 0011234455667999999988 4455 6899999999999 88888864
No 105
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.35 E-value=7.6e-15 Score=129.98 Aligned_cols=69 Identities=7% Similarity=-0.066 Sum_probs=51.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCCc-cccccccccccccc-----HHhhccceEEecCCCCCCCCCCHHHHHHH
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQNSLLMTNIMH-----LFQYLSGIGYCPQFNGINEHLTAQEMLEC 106 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i~~~g~~~~~-----~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~ 106 (178)
.+|+|+|||||| |+++.++|+..| ++|.++++|.++.. ..++++.++|+||++.+++.+||.+++.+
T Consensus 48 iaIvG~nGsGKS-------TLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 48 IAVIGDQSSGKS-------SVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EECCCCTTSCHH-------HHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred EEEECCCCChHH-------HHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 679999999999 999999999878 89999999988532 23567789999999999999999999987
Q ss_pred HH
Q psy860 107 FS 108 (178)
Q Consensus 107 ~~ 108 (178)
..
T Consensus 121 ~~ 122 (608)
T 3szr_A 121 AQ 122 (608)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 106
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.33 E-value=6.6e-14 Score=128.90 Aligned_cols=107 Identities=13% Similarity=-0.044 Sum_probs=66.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc-CCcccccccccccccccHHhhccceEEecCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF-SPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF 91 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~-~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~ 91 (178)
..+++||||+++.|+ +.+|.||||+||| |+++.+... ..++.| +|+|+.
T Consensus 649 ~~v~ndisl~~~~g~----i~~ItGpNGsGKS-------TlLr~ial~~~~aq~G-------------------~~vpa~ 698 (934)
T 3thx_A 649 AFIPNDVYFEKDKQM----FHIITGPNMGGKS-------TYIRQTGVIVLMAQIG-------------------CFVPCE 698 (934)
T ss_dssp CCCCEEEEEETTTBC----EEEEECCTTSSHH-------HHHHHHHHHHHHHHHT-------------------CCBSEE
T ss_pred eeecccceeecCCCe----EEEEECCCCCCHH-------HHHHHHHHHHHHHhcC-------------------Cccccc
Confidence 468899999999999 8889999999999 888876321 011111 122222
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH--hCCCCeEEeeCCC
Q psy860 92 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL--IGDRDDGFQKLPF 169 (178)
Q Consensus 92 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL--~~~P~~lllDEPt 169 (178)
...... +++++..+|+. +.....+|+++++++.+|+++ +++|+++||||||
T Consensus 699 ~~~~~~------------------------~d~i~~~ig~~---d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~ 751 (934)
T 3thx_A 699 SAEVSI------------------------VDCILARVGAG---DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELG 751 (934)
T ss_dssp EEEEEC------------------------CSEEEEECC------------CHHHHHHHHHHHHHHHCCTTCEEEEESCS
T ss_pred cccchH------------------------HHHHHHhcCch---hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 100000 00111222332 223456788888888888888 9999999999999
Q ss_pred CCCCCCC
Q psy860 170 SSQNLYN 176 (178)
Q Consensus 170 ~gLD~~~ 176 (178)
+|+|+..
T Consensus 752 ~GlD~~~ 758 (934)
T 3thx_A 752 RGTSTYD 758 (934)
T ss_dssp CSSCHHH
T ss_pred CCCCHHH
Confidence 9999853
No 107
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.31 E-value=2.6e-13 Score=112.09 Aligned_cols=43 Identities=19% Similarity=0.155 Sum_probs=38.3
Q ss_pred cccCcCCCCChHHHH------HHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 134 YRHRVSGRYSGGNKR------KLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 134 ~~~~~~~~LSgGqkQ------Rv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
..++++.+||||||| |+++|+||+.+|++|||||||+||||..
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~ 289 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEER 289 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHH
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHH
Confidence 346788999999999 6788889999999999999999999864
No 108
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.31 E-value=1.8e-12 Score=103.95 Aligned_cols=138 Identities=12% Similarity=-0.026 Sum_probs=89.3
Q ss_pred hhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccce
Q psy860 6 YLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGI 85 (178)
Q Consensus 6 ~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~i 85 (178)
+++|+ +.|+.+--.++.|+ +..|.|+||+||| ||+..+++... .|.++. |..... ...+
T Consensus 13 i~tg~---~~ld~~lggl~~G~----i~~i~G~~GsGKT-------tl~~~l~~~~~--~g~~~~-g~~~~~----~~~v 71 (279)
T 1nlf_A 13 FAAAP---PPLDYVLPNMVAGT----VGALVSPGGAGKS-------MLALQLAAQIA--GGPDLL-EVGELP----TGPV 71 (279)
T ss_dssp HHSCC---CCCCEEETTEETTS----EEEEEESTTSSHH-------HHHHHHHHHHH--TCCCTT-CCCCCC----CCCE
T ss_pred hcCCC---CChheeECCccCCC----EEEEEcCCCCCHH-------HHHHHHHHHHh--cCCCcC-CCccCC----CccE
Confidence 34555 33443333688999 7789999999999 88887776432 355433 332211 2346
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEe
Q psy860 86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQ 165 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lll 165 (178)
.|+..+.. ..+.......+. .. .....+.++++.+.+.+..++.+..||+||+|++ ++++.+|+++++
T Consensus 72 ~~~~~e~~------~~~~~~r~~~~g-~~--~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livl 139 (279)
T 1nlf_A 72 IYLPAEDP------PTAIHHRLHALG-AH--LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVL 139 (279)
T ss_dssp EEEESSSC------HHHHHHHHHHHH-TT--SCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEE
T ss_pred EEEECCCC------HHHHHHHHHHHH-hh--cChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEE
Confidence 67655432 211111111111 11 1234466778889888888889999999998865 688899999999
Q ss_pred eCCCC--CCCCCC
Q psy860 166 KLPFS--SQNLYN 176 (178)
Q Consensus 166 DEPt~--gLD~~~ 176 (178)
||||+ ++|+..
T Consensus 140 De~~~~~~~d~~~ 152 (279)
T 1nlf_A 140 DTLRRFHIEEENA 152 (279)
T ss_dssp ECGGGGCCSCTTC
T ss_pred CCHHHhcCCCcCc
Confidence 99999 999753
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.31 E-value=4.4e-15 Score=123.40 Aligned_cols=115 Identities=11% Similarity=-0.020 Sum_probs=80.3
Q ss_pred ccccch-hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC--Cccc----cc-ccccccccccHHhhccce
Q psy860 14 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS--PFQA----AQ-NSLLMTNIMHLFQYLSGI 85 (178)
Q Consensus 14 ~~~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~--~~~~----g~-i~~~g~~~~~~~~~~~~i 85 (178)
+.|+.+ ++.|+.|+ +..|.|+||+||| ||+..+.+.. +|+. |. +++++++.. .++++
T Consensus 118 ~~LD~lL~ggi~~G~----i~~I~G~~GsGKT-------TL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----~~~~i 182 (349)
T 1pzn_A 118 KSLDKLLGGGIETQA----ITEVFGEFGSGKT-------QLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----RPERI 182 (349)
T ss_dssp HHHHHHHTSSEESSE----EEEEEESTTSSHH-------HHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----CHHHH
T ss_pred HHHHHHhcCCCCCCe----EEEEECCCCCCHH-------HHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----CHHHH
Confidence 678887 78999999 6779999999999 9999888886 6666 45 677776531 12345
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh-------C
Q psy860 86 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI-------G 158 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~-------~ 158 (178)
++++|...+++. ++.+|+.+. +. .-|.+++|++.++++++ .
T Consensus 183 ~~i~q~~~~~~~-~v~~ni~~~----------------------------~~---~~~~~~~~~l~~~~~~~~~lS~G~~ 230 (349)
T 1pzn_A 183 REIAQNRGLDPD-EVLKHIYVA----------------------------RA---FNSNHQMLLVQQAEDKIKELLNTDR 230 (349)
T ss_dssp HHHHHTTTCCHH-HHGGGEEEE----------------------------EC---CSHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHcCCCHH-HHhhCEEEE----------------------------ec---CChHHHHHHHHHHHHHHHHhccccC
Confidence 666666544322 333322110 00 01466788888888887 7
Q ss_pred CCCeEEeeCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~ 175 (178)
+|+++|+||||+++|+.
T Consensus 231 ~~~llIlDs~ta~ld~~ 247 (349)
T 1pzn_A 231 PVKLLIVDSLTSHFRSE 247 (349)
T ss_dssp CEEEEEEETSSTTHHHH
T ss_pred CCCEEEEeCchHhhhhh
Confidence 89999999999999974
No 110
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.25 E-value=3.1e-12 Score=111.10 Aligned_cols=40 Identities=10% Similarity=-0.077 Sum_probs=37.1
Q ss_pred CcCCCC-ChHHHHHHHHHHHHhCCC--CeEEeeCCCCCCCCCC
Q psy860 137 RVSGRY-SGGNKRKLSTAMALIGDR--DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 137 ~~~~~L-SgGqkQRv~IAraL~~~P--~~lllDEPt~gLD~~~ 176 (178)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.+
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~ 434 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAA 434 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHH
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHH
Confidence 456778 999999999999999999 9999999999999864
No 111
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.24 E-value=4.5e-15 Score=112.05 Aligned_cols=125 Identities=10% Similarity=-0.014 Sum_probs=79.3
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHH
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQ 101 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~ 101 (178)
.++.|+ +.+|+|+|||||| |+++.+.+. ++.|.+.+++.++......++.++|++|... +..++.
T Consensus 5 ~i~~g~----~i~l~G~~GsGKS-------Tl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~ 69 (191)
T 1zp6_A 5 DDLGGN----ILLLSGHPGSGKS-------TIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIM 69 (191)
T ss_dssp -CCTTE----EEEEEECTTSCHH-------HHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHH
T ss_pred CCCCCe----EEEEECCCCCCHH-------HHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHH
Confidence 366777 6789999999999 999999887 6788888888765332222334677777543 356788
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccc--cCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 102 EMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYR--HRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 102 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~--~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
+++.+........... ..++.+++.+++.... +..+..+|+|++|++++||++..+|+++
T Consensus 70 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 70 QIAADVAGRYAKEGYF--VILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp HHHHHHHHHHHHTSCE--EEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHHHHhccCCe--EEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 8876643221000000 0001111112222222 3456789999999999999999999876
No 112
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.23 E-value=1.4e-13 Score=102.36 Aligned_cols=78 Identities=13% Similarity=-0.015 Sum_probs=66.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
..++++|||+|++|+ +.+|+|+|||||| ||++.+.|+. |++|+|.++|.++.+..+.+ .+++|++
T Consensus 20 ~~~l~~vsl~i~~Ge----~v~L~G~nGaGKT-------TLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~---~~~~q~~ 84 (158)
T 1htw_A 20 KFAEILLKLHTEKAI----MVYLNGDLGAGKT-------TLTRGMLQGI-GHQGNVKSPTYTLVEEYNIA---GKMIYHF 84 (158)
T ss_dssp HHHHHHHHHCCSSCE----EEEEECSTTSSHH-------HHHHHHHHHT-TCCSCCCCCTTTCEEEEEET---TEEEEEE
T ss_pred HHHHhccccccCCCC----EEEEECCCCCCHH-------HHHHHHHHhC-CCCCeEEECCEeeeeeccCC---Ccceecc
Confidence 468999999999999 8889999999999 9999999999 99999999998875322222 2799998
Q ss_pred CCCCCCCHHHHHHH
Q psy860 93 GINEHLTAQEMLEC 106 (178)
Q Consensus 93 ~l~~~ltv~e~l~~ 106 (178)
.++ .+|+.|++.+
T Consensus 85 ~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 85 DLY-RLADPEELEF 97 (158)
T ss_dssp ECT-TCSCTTHHHH
T ss_pred ccc-cCCcHHHHHH
Confidence 888 8999999865
No 113
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.23 E-value=1.3e-14 Score=119.97 Aligned_cols=148 Identities=9% Similarity=-0.024 Sum_probs=99.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHH------hhccceE
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLF------QYLSGIG 86 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~------~~~~~ig 86 (178)
..+++++|+++..|+ +.+|+|+||+||| |+++.+.++..|++|.+.+.+.++.... ..+++++
T Consensus 42 ~~~l~~i~~~~~~g~----~v~i~G~~GaGKS-------TLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~ 110 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAI----RVGITGVPGVGKS-------TTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110 (337)
T ss_dssp HHHHHHHGGGCCCSE----EEEEECCTTSCHH-------HHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGST
T ss_pred HHHHHhCCcccCCCe----EEEEECCCCCCHH-------HHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhhe
Confidence 468999999999999 8889999999999 9999999999999999999988764332 3466799
Q ss_pred EecCCCCCCCCCC------------HHHHHHHHHH-----------------------------hcCCCCCC----hhHH
Q psy860 87 YCPQFNGINEHLT------------AQEMLECFSA-----------------------------LRGIPGVK----SGPI 121 (178)
Q Consensus 87 ~v~Q~~~l~~~lt------------v~e~l~~~~~-----------------------------~~~~~~~~----~~~~ 121 (178)
+++|++.++...+ +.|.+..... .......+ ..+.
T Consensus 111 ~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~ 190 (337)
T 2qm8_A 111 RLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKG 190 (337)
T ss_dssp TGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTT
T ss_pred eeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHH
Confidence 9999987765321 2222211100 00000000 0011
Q ss_pred HHHHHHHcCCCccccC-cCCCCChHHHHHHHHHHHHhC------CCCeEEeeCCCCCCCCCC
Q psy860 122 IDYWIDLLGLTEYRHR-VSGRYSGGNKRKLSTAMALIG------DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 122 ~~~~l~~~~L~~~~~~-~~~~LSgGqkQRv~IAraL~~------~P~~lllDEPt~gLD~~~ 176 (178)
+.+....+.+ +..|. ...++|+|++|++..|++++. +|++++ ||++|+.+
T Consensus 191 i~~~~~ivvl-NK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~g 247 (337)
T 2qm8_A 191 IFELADMIAV-NKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKG 247 (337)
T ss_dssp HHHHCSEEEE-ECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBS
T ss_pred HhccccEEEE-EchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCC
Confidence 1111111222 34443 235689999999999999987 688876 99999865
No 114
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.22 E-value=2.1e-13 Score=110.71 Aligned_cols=123 Identities=14% Similarity=-0.037 Sum_probs=82.5
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHH---
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFS--- 108 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~--- 108 (178)
+.+|.|++||||| |+.+.+.++..++ |. . ++.+.+|+|+..+++ .+.++++.+..
T Consensus 33 ii~I~G~sGsGKS-------Tla~~L~~~l~~~-g~------------~-~~~~~iv~~D~f~~~-~~~~~~l~~~~~~~ 90 (290)
T 1odf_A 33 FIFFSGPQGSGKS-------FTSIQIYNHLMEK-YG------------G-EKSIGYASIDDFYLT-HEDQLKLNEQFKNN 90 (290)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHHHHH-HG------------G-GSCEEEEEGGGGBCC-HHHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHhhhc-CC------------C-CceEEEeccccccCC-hHHHHHHhcccccc
Confidence 6889999999999 7777777665543 10 0 234556699876654 46777776541
Q ss_pred ---HhcCCCCCChhHHHHHHHHHcCCC--------ccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 109 ---ALRGIPGVKSGPIIDYWIDLLGLT--------EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 109 ---~~~~~~~~~~~~~~~~~l~~~~L~--------~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
..++.+.....+...+.++.+.-. -....+...+||||+||+.+|++...+|++||+||||+++|+..
T Consensus 91 ~l~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 91 KLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GGGSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCC
T ss_pred chhhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccc
Confidence 112233333445566677766432 12334567899999999999844333999999999999999864
No 115
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.20 E-value=6.8e-14 Score=109.29 Aligned_cols=129 Identities=11% Similarity=0.052 Sum_probs=76.0
Q ss_pred ccccchhh-hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh--ccCCcccccccccccccc-cHHhhccceEEec
Q psy860 14 PQFNGINE-HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI--RFSPFQAAQNSLLMTNIM-HLFQYLSGIGYCP 89 (178)
Q Consensus 14 ~~~~~v~~-~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~--~~~~~~~g~i~~~g~~~~-~~~~~~~~ig~v~ 89 (178)
+.|+.+-- .|++|+ +.+|+|+|||||| ||+++++ ++.++..+.+++.+.... ...+..+.+++.+
T Consensus 17 ~~lD~~l~Ggi~~G~----~~~l~GpnGsGKS-------TLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 85 (251)
T 2ehv_A 17 PGFDELIEGGFPEGT----TVLLTGGTGTGKT-------TFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF 85 (251)
T ss_dssp TTTGGGTTTSEETTC----EEEEECCTTSSHH-------HHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCH
T ss_pred HhHHHHhcCCCCCCc----EEEEEeCCCCCHH-------HHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCCh
Confidence 56777632 799999 8889999999999 9999888 554556666666665432 2334445678877
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
|+....+.+++.++....... . .... .......+-.+..+...+..-..+|+++++||||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~---~----~~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~ 145 (251)
T 2ehv_A 86 EKYEKEGKIAIVDGVSSVVGL---P----SEEK-------------FVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIP 145 (251)
T ss_dssp HHHHHTTSEEEEC---------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHH
T ss_pred HHHhhcCCEEEEEcccccccc---c----cccc-------------eeccCcccHHHHHHHHHHHHHhhCCCEEEEccHH
Confidence 764333444443322111000 0 0000 0011123344444445555556899999999999
Q ss_pred CCCC
Q psy860 170 SSQN 173 (178)
Q Consensus 170 ~gLD 173 (178)
+++|
T Consensus 146 ~~ld 149 (251)
T 2ehv_A 146 SIAL 149 (251)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9997
No 116
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.20 E-value=1.7e-12 Score=108.20 Aligned_cols=42 Identities=12% Similarity=-0.014 Sum_probs=38.0
Q ss_pred cCcCC-CCChHHHHHHHHHHHHh---------CCCCeEEeeCCCCCCCCCCC
Q psy860 136 HRVSG-RYSGGNKRKLSTAMALI---------GDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 136 ~~~~~-~LSgGqkQRv~IAraL~---------~~P~~lllDEPt~gLD~~~~ 177 (178)
++++. .||+|||||++||++|+ .+|++|+|||||++||+..+
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~ 310 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRR 310 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHH
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHH
Confidence 45677 79999999999999999 89999999999999998643
No 117
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.18 E-value=1.8e-12 Score=117.85 Aligned_cols=110 Identities=8% Similarity=-0.054 Sum_probs=69.1
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC-cccccccccccccccHHhhccceEEec
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP-FQAAQNSLLMTNIMHLFQYLSGIGYCP 89 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~-~~~g~i~~~g~~~~~~~~~~~~ig~v~ 89 (178)
|...+++||||+ +.|+ +.+|.||||+||| |+++.+.++.. ++.|. .+. ..+..+++++
T Consensus 593 ~~~~vlndisl~-~~g~----i~~ItGpNGsGKS-------TlLr~iagl~~~~q~G~------~vp---a~~~~i~~~~ 651 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRR----MLIITGPNMGGKS-------TYMRQTALIALMAYIGS------YVP---AQKVEIGPID 651 (800)
T ss_dssp SSCCCCEEEEEC-SSSC----EEEEECCTTSSHH-------HHHHHHHHHHHHHTTTC------CBS---SSEEEECCCC
T ss_pred CCceeeeccccc-CCCc----EEEEECCCCCChH-------HHHHHHHHHHHHHhcCc------ccc---hhcccceeHH
Confidence 345789999999 8999 8889999999999 99998887632 12221 111 0112355554
Q ss_pred CCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 90 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 90 Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
| ++..+++.+++.. ..+.+|+++++ +..+...+++|+++|||||+
T Consensus 652 ~---i~~~~~~~d~l~~-------------------------------~~stf~~e~~~-~~~il~~a~~psLlLLDEp~ 696 (800)
T 1wb9_A 652 R---IFTRVGAADDLAS-------------------------------GRSTFMVEMTE-TANILHNATEYSLVLMDEIG 696 (800)
T ss_dssp E---EEEEEC------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCC
T ss_pred H---HHhhCCHHHHHHh-------------------------------hhhhhhHHHHH-HHHHHHhccCCCEEEEECCC
Confidence 4 3444455444321 12346777765 44445568999999999999
Q ss_pred CCCCCCC
Q psy860 170 SSQNLYN 176 (178)
Q Consensus 170 ~gLD~~~ 176 (178)
+|+|+..
T Consensus 697 ~Gtd~~d 703 (800)
T 1wb9_A 697 RGTSTYD 703 (800)
T ss_dssp CCSSSSH
T ss_pred CCCChhH
Confidence 9999863
No 118
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.18 E-value=4.4e-14 Score=120.04 Aligned_cols=132 Identities=11% Similarity=0.019 Sum_probs=93.4
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------HhhccceEEe
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQYLSGIGYC 88 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~~~~ig~v 88 (178)
+|+++ +. .+|+ +.+|.|+|||||| |+++.+++..+|+.|.|.+.+.++... .++++.+++.
T Consensus 158 ~L~~l-~~-~~gg----ii~I~GpnGSGKT-------TlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~ 224 (418)
T 1p9r_A 158 NFRRL-IK-RPHG----IILVTGPTGSGKS-------TTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMT 224 (418)
T ss_dssp HHHHH-HT-SSSE----EEEEECSTTSCHH-------HHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBC
T ss_pred HHHHH-HH-hcCC----eEEEECCCCCCHH-------HHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcC
Confidence 56666 43 5666 6789999999999 999999999989999998888776311 1234456665
Q ss_pred c---------CCCCC--CCC----CCHHHHHHHHHHh----cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHH
Q psy860 89 P---------QFNGI--NEH----LTAQEMLECFSAL----RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK 149 (178)
Q Consensus 89 ~---------Q~~~l--~~~----ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR 149 (178)
| |+|.+ +.. .|+.+++.+...- .........+ +.+.+..+++.+.. .+.+|||||+||
T Consensus 225 f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~-~i~rL~~lgl~~~~--~~~~LSgg~~QR 301 (418)
T 1p9r_A 225 FARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVG-AVTRLRDMGIEPFL--ISSSLLGVLAQR 301 (418)
T ss_dssp HHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHH-HHHHHHHHTCCHHH--HHHHEEEEEEEE
T ss_pred HHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHH-HHHHHHHcCCcHHH--HHHHHHHHHHHH
Confidence 5 88765 233 5788888764311 1112223333 33457788987653 678999999999
Q ss_pred HHHHHHHhCCCCeEE
Q psy860 150 LSTAMALIGDRDDGF 164 (178)
Q Consensus 150 v~IAraL~~~P~~ll 164 (178)
|||+|+.+|++..
T Consensus 302 --LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 --LVRTLCPDCKEPY 314 (418)
T ss_dssp --EEEEECTTTCEEE
T ss_pred --hhhhhcCCCCccC
Confidence 9999999999875
No 119
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.17 E-value=1.1e-14 Score=109.68 Aligned_cols=107 Identities=8% Similarity=0.000 Sum_probs=67.6
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccH-----Hhhc-cceE----EecCCCCCCCCC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHL-----FQYL-SGIG----YCPQFNGINEHL 98 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~-----~~~~-~~ig----~v~Q~~~l~~~l 98 (178)
..+|+|+|||||| ||++.+.++.+|+ .|.+.+++.++.++ ..+| +.+| +++|++.++.
T Consensus 4 ~v~IvG~SGsGKS-------TL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-- 74 (171)
T 2f1r_A 4 ILSIVGTSDSGKT-------TLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-- 74 (171)
T ss_dssp EEEEEESCHHHHH-------HHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--
Confidence 5789999999999 9999999998888 89999999875443 2444 3577 7888765441
Q ss_pred CHHHHHHHHHHhcCCCCCChhHHHHHHHHH-c-CCCccccCcCCCCChHHHHHHHHHHHHhCCCCeE
Q psy860 99 TAQEMLECFSALRGIPGVKSGPIIDYWIDL-L-GLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDG 163 (178)
Q Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~-~-~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~l 163 (178)
.+ . ..+....+.++++. + +++... ...|||||+||++||||++.+|++.
T Consensus 75 --~~---------~--~~~~~a~l~~~i~~~l~g~dt~i---~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 75 --RR---------V--SEEEGNDLDWIYERYLSDYDLVI---TEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp --EE---------C--CHHHHTCHHHHHHHHTTTCSEEE---EESCGGGCCCEEEECSSGGGGGGGC
T ss_pred --ec---------C--ChhhhhCHHHHHHhhCCCCCEEE---ECCcCCCCCcEEEEEecccCCCccC
Confidence 00 0 00001123444444 3 333211 2249999999999999999999873
No 120
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.15 E-value=2.5e-13 Score=117.21 Aligned_cols=135 Identities=15% Similarity=0.081 Sum_probs=92.7
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------Hh--hccceEE
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQ--YLSGIGY 87 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~--~~~~ig~ 87 (178)
-++|||++..|+ +.+|+|+|||||| |+++++.++.+++.|.|.+.+.+.... .. .+++|+|
T Consensus 283 ~~~Isl~i~~Ge----VI~LVGpNGSGKT-------TLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~v 351 (503)
T 2yhs_A 283 DEPLNVEGKAPF----VILMVGVNGVGKT-------TTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPV 351 (503)
T ss_dssp BCCCCCCSCTTE----EEEEECCTTSSHH-------HHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCE
T ss_pred CCCceeeccCCe----EEEEECCCcccHH-------HHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceE
Confidence 578999999999 7889999999999 999999999999999999987665332 22 3568999
Q ss_pred ecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHH-hCCCC-eEEe
Q psy860 88 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMAL-IGDRD-DGFQ 165 (178)
Q Consensus 88 v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL-~~~P~-~lll 165 (178)
++|+..+++..++++++.++... +.. . + +++..|..+.....+.+| +|++.+++++ ...|+ ++|.
T Consensus 352 V~Q~~~~~p~~tV~e~l~~a~~~-~~D---v---V--LIDTaGrl~~~~~lm~EL----~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 352 IAQHTGADSASVIFDAIQAAKAR-NID---V---L--IADTAGRLQNKSHLMEEL----KKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp ECCSTTCCHHHHHHHHHHHHHHT-TCS---E---E--EECCCCSCCCHHHHHHHH----HHHHHHHHTTCTTCSSEEEEE
T ss_pred EecccCcCHHHHHHHHHHHHHhc-CCC---E---E--EEeCCCccchhhhHHHHH----HHHHHHHHHhccCCCCeeEEE
Confidence 99998888888999999876432 110 0 0 112223222211222223 4778888866 44574 4545
Q ss_pred eCCCCCCCC
Q psy860 166 KLPFSSQNL 174 (178)
Q Consensus 166 DEPt~gLD~ 174 (178)
..||+|.|.
T Consensus 419 LDattGq~a 427 (503)
T 2yhs_A 419 IDASTGQNA 427 (503)
T ss_dssp EEGGGTHHH
T ss_pred ecCcccHHH
Confidence 558887653
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.14 E-value=3.5e-13 Score=114.53 Aligned_cols=143 Identities=10% Similarity=-0.045 Sum_probs=86.2
Q ss_pred cCccccccchhhhccHHHHHHHh--hhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccce
Q psy860 10 IGYCPQFNGINEHLTAQEMLECF--SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGI 85 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~~~~--~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~i 85 (178)
+|..+ |++|||+++.|+ + .+|+|+||+||| ||++.+.|+. ++|.++.. ....++.+
T Consensus 25 y~~~~-L~~vsl~i~~Ge----i~~vaLvG~nGaGKS-------TLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGF----CFNILCVGETGLGKS-------TLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp CC--C-HHHHHHSCC-CC----EEEEEEECSTTSSSH-------HHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred ECCee-cCCCceEecCCC----eeEEEEECCCCCCHH-------HHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 34456 999999999999 7 789999999999 9999999873 22322221 11234579
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHhcC-CCCC----ChhHHHHHHHHHc-CCC----ccccCcC-----------CCCCh
Q psy860 86 GYCPQFNGINEHLTAQEMLECFSALRG-IPGV----KSGPIIDYWIDLL-GLT----EYRHRVS-----------GRYSG 144 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~~~~~~-~~~~----~~~~~~~~~l~~~-~L~----~~~~~~~-----------~~LSg 144 (178)
+|++|++.+++.+|+.|++.+...... .... ...+...++++.. ++. ...+.++ ..|+-
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~ 164 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKS 164 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CH
T ss_pred EEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCH
Confidence 999999888888888887654211000 0000 0123344555554 443 1122221 13554
Q ss_pred HHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860 145 GNKRKLSTAMALIGDRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 145 GqkQRv~IAraL~~~P~~lllDEPt~gLD~~ 175 (178)
.. +.|+++|..+++++++||||..|.+.
T Consensus 165 ~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 165 LD---LVTMKKLDSKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HH---HHHHHHTCSCSEEEEEESCGGGSCHH
T ss_pred HH---HHHHHHHhhCCCEEEEEcchhccchH
Confidence 44 89999999999999999999988653
No 122
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.11 E-value=7e-11 Score=98.54 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=35.6
Q ss_pred CcCCCCChHHHHHH------HHHHHHhCC-CCeEEeeCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKRKL------STAMALIGD-RDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 137 ~~~~~LSgGqkQRv------~IAraL~~~-P~~lllDEPt~gLD~~~ 176 (178)
+++..||||||||| ++|++++.+ |+++||||||+|||+..
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~ 322 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENR 322 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHH
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHH
Confidence 55678999999988 567899999 99999999999999864
No 123
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.10 E-value=1e-12 Score=106.98 Aligned_cols=108 Identities=10% Similarity=-0.021 Sum_probs=73.8
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHHhh--ccceEEecCCCC---
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLFQY--LSGIGYCPQFNG--- 93 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~~~--~~~ig~v~Q~~~--- 93 (178)
++..|+ +.+++|+||+||| ||++.+.|+.+|+.|.+.+ +|+++....+. .+.+||++|.|.
T Consensus 165 ~~l~ge----iv~l~G~sG~GKS-------Tll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 165 EYLKGK----ISTMAGLSGVGKS-------SLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp HHHSSS----EEEEECSTTSSHH-------HHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred HHhcCC----eEEEECCCCCcHH-------HHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 444566 6789999999999 9999999999999999998 88776543221 136899999975
Q ss_pred -------------CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCC-ccccCcCCCCCh
Q psy860 94 -------------INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT-EYRHRVSGRYSG 144 (178)
Q Consensus 94 -------------l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSg 144 (178)
+++++|+ +|+.+.. .....+...++.++++.++|. +..++++..||.
T Consensus 234 ~~~~~~~~~~~~~l~~~~~~-~n~~~~~---~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 234 LEINDIEPEELKHYFKEFGD-KQCFFSD---CNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp CCCCSSCHHHHGGGSTTSSS-CCCSSTT---CCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cCCCcCCHHHHHHHHHhccc-ccCcCCC---CcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4677788 7776531 112345567899999999996 778888988885
No 124
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.10 E-value=5.4e-13 Score=102.89 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=30.7
Q ss_pred ccccchh-hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 14 PQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 14 ~~~~~v~-~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
+.|+.+- -.|++|| +.+|+|+|||||| |+++.+++...+
T Consensus 12 ~~LD~~l~ggi~~G~----~~~l~G~nGsGKS-------Tll~~l~g~~~~ 51 (231)
T 4a74_A 12 KSLDKLLGGGIETQA----ITEVFGEFGSGKT-------QLAHTLAVMVQL 51 (231)
T ss_dssp HHHHHHTTSSEESSE----EEEEEESTTSSHH-------HHHHHHHHHTTS
T ss_pred hhHHhHhcCCCCCCc----EEEEECCCCCCHH-------HHHHHHHHHHhc
Confidence 4455443 3788999 8889999999999 999999885444
No 125
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.09 E-value=1.8e-11 Score=102.00 Aligned_cols=67 Identities=9% Similarity=0.051 Sum_probs=53.7
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEec-CCC
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCP-QFN 92 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~-Q~~ 92 (178)
+++++||.|++|+ ..+|.|+||+||| |+++.+.++.+|++|.|.+++.........++.+++++ |++
T Consensus 164 ~~~~l~~~i~~G~----~i~ivG~sGsGKS-------Tll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 164 YMSFLRRAVQLER----VIVVAGETGSGKT-------TLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HHHHHHHHHHTTC----CEEEEESSSSCHH-------HHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC---
T ss_pred HHHHHHHHHhcCC----EEEEECCCCCCHH-------HHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcc
Confidence 3499999999999 7889999999999 99999999999999999998753222233566789998 654
No 126
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.06 E-value=4.6e-11 Score=101.36 Aligned_cols=40 Identities=15% Similarity=0.022 Sum_probs=35.9
Q ss_pred CcCCCCChHHHHHHHHHHHHh----CCCCeEEeeCCCCCCCCCC
Q psy860 137 RVSGRYSGGNKRKLSTAMALI----GDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 137 ~~~~~LSgGqkQRv~IAraL~----~~P~~lllDEPt~gLD~~~ 176 (178)
+++..||||||||++||++|+ .+|+++||||||++||+.+
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~ 372 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITN 372 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHH
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHH
Confidence 345569999999999999999 6899999999999999864
No 127
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.05 E-value=3.4e-12 Score=105.03 Aligned_cols=137 Identities=15% Similarity=0.062 Sum_probs=87.4
Q ss_pred hhccCccccccchhhhccHHHHHH---HhhhhhCCCCCCccchHHHHHHHhhhhhccC----CcccccccccccccccH-
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLE---CFSALRGIPGVKSGPIIDYWIDLLGSAIRFS----PFQAAQNSLLMTNIMHL- 78 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~---~~~~i~G~~g~gk~~~~~~~itll~~~~~~~----~~~~g~i~~~g~~~~~~- 78 (178)
.+-+|-..+++++++.+..|..-. -...+.||||+||| |+++.+.+.. .+++|.+...+.++...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKT-------TLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKT-------TLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHH-------HHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHH-------HHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 445566678999999999872110 05679999999999 8888888776 67788887766665443
Q ss_pred Hhh-ccceEEecCCCCCCCCCCHHHHHHHHHHhcCCC----CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHH
Q psy860 79 FQY-LSGIGYCPQFNGINEHLTAQEMLECFSALRGIP----GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTA 153 (178)
Q Consensus 79 ~~~-~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IA 153 (178)
... +..|.+++|.+.+.+ ++.|++.......... .....+.+...++.+++.. +.+.+..||+|++||+.++
T Consensus 98 ~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII 174 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE
T ss_pred HHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce
Confidence 222 457999999877654 6777775433322211 1122233444555566654 6778899999999998654
No 128
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.04 E-value=5.8e-15 Score=121.09 Aligned_cols=127 Identities=11% Similarity=-0.016 Sum_probs=81.7
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccC--------CcccccccccccccccH-----------------HhhccceE
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFS--------PFQAAQNSLLMTNIMHL-----------------FQYLSGIG 86 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~--------~~~~g~i~~~g~~~~~~-----------------~~~~~~ig 86 (178)
+.+|.|+|||||| |+++.+.+.. .++.|++.++|..+... .++++.++
T Consensus 6 v~~i~G~~GaGKT-------Tll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~ 78 (318)
T 1nij_A 6 VTLLTGFLGAGKT-------TLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALL 78 (318)
T ss_dssp EEEEEESSSSSCH-------HHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHH
T ss_pred EEEEEecCCCCHH-------HHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHH
Confidence 4578999999999 9999999886 78999999999877542 12344577
Q ss_pred Ee---cCCCCCCCCCCHHHHHHHH--H----HhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh
Q psy860 87 YC---PQFNGINEHLTAQEMLECF--S----ALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI 157 (178)
Q Consensus 87 ~v---~Q~~~l~~~ltv~e~l~~~--~----~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~ 157 (178)
++ +|++.++++.++.|+..++ . .+...+......++..++..+++.+..++.. ++|+||+||+..+++++
T Consensus 79 ~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 79 DLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-HCHHHHHHHHTCSEEEE
T ss_pred HHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-hchHHHHHHHhCCEEEE
Confidence 76 5766555566665544321 0 0000000000001112233345554444443 79999999999999999
Q ss_pred CCCCeEEeeCC
Q psy860 158 GDRDDGFQKLP 168 (178)
Q Consensus 158 ~~P~~lllDEP 168 (178)
.+|+++ |||
T Consensus 158 ~k~dl~--de~ 166 (318)
T 1nij_A 158 TKTDVA--GEA 166 (318)
T ss_dssp ECTTTC--SCT
T ss_pred ECcccC--CHH
Confidence 999988 998
No 129
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.03 E-value=5.7e-12 Score=103.04 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=72.7
Q ss_pred hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc---cccccccHHhhc-cceEEecCCCCCCC
Q psy860 21 EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL---LMTNIMHLFQYL-SGIGYCPQFNGINE 96 (178)
Q Consensus 21 ~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~---~g~~~~~~~~~~-~~ig~v~Q~~~l~~ 96 (178)
+++..|+ ..+++|+||+||| ||++.+.|...++.|.+.+ .|+..+...+.. ..+||++|.|.+.+
T Consensus 168 ~~~~~G~----~~~lvG~sG~GKS-------TLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQDK----TTVFAGQSGVGKS-------SLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSS 236 (307)
T ss_dssp GGGGTTS----EEEEEESHHHHHH-------HHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSS
T ss_pred HhhcCCC----EEEEECCCCCCHH-------HHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccc
Confidence 6778888 7889999999999 9999999999999999988 776654332322 23899999998765
Q ss_pred ----CCCHHHHHH-HHHH---h------cC-CCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHH
Q psy860 97 ----HLTAQEMLE-CFSA---L------RG-IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK 149 (178)
Q Consensus 97 ----~ltv~e~l~-~~~~---~------~~-~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR 149 (178)
.+|+ |++. ++.. + .+ ....+...++.++++.++|.+...+....++.|++||
T Consensus 237 ~~l~~lt~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 237 LEFTDIEE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp CCCTTCCH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred cccccCCH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 6789 7773 2221 1 11 2233455679999999999876656666777788773
No 130
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.03 E-value=3e-11 Score=100.65 Aligned_cols=45 Identities=7% Similarity=0.049 Sum_probs=34.4
Q ss_pred ccccchhh-------hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-ccccc
Q psy860 14 PQFNGINE-------HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-AAQNS 69 (178)
Q Consensus 14 ~~~~~v~~-------~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-~g~i~ 69 (178)
+.|+++++ .+.+|+ +.+|.|+|||||| |+++.++++.+|+ .+.+.
T Consensus 104 ~~l~~lg~~~~l~~l~~~~~g----~i~I~GptGSGKT-------TlL~~l~g~~~~~~~~~i~ 156 (356)
T 3jvv_A 104 LTMEELGMGEVFKRVSDVPRG----LVLVTGPTGSGKS-------TTLAAMLDYLNNTKYHHIL 156 (356)
T ss_dssp CCTTTTTCCHHHHHHHHCSSE----EEEEECSTTSCHH-------HHHHHHHHHHHHHCCCEEE
T ss_pred CCHHHcCChHHHHHHHhCCCC----EEEEECCCCCCHH-------HHHHHHHhcccCCCCcEEE
Confidence 44555554 556666 6789999999999 9999999998887 45543
No 131
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.02 E-value=4.3e-11 Score=100.11 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=72.0
Q ss_pred ccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc-cccccccccccccHHhhccceEEecC
Q psy860 12 YCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ-AAQNSLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 12 ~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~-~g~i~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
..++|++++ +++|+ +.+|.|+|||||| |+++.+.++.+|+ +|.|.+.+.++. . ..+..+++++|
T Consensus 124 ~~~~l~~l~--~~~g~----~i~ivG~~GsGKT-------Tll~~l~~~~~~~~~g~I~~~e~~~e-~-~~~~~~~~v~Q 188 (372)
T 2ewv_A 124 LPDKVLELC--HRKMG----LILVTGPTGSGKS-------TTIASMIDYINQTKSYHIITIEDPIE-Y-VFKHKKSIVNQ 188 (372)
T ss_dssp CCSSHHHHT--TSSSE----EEEEECSSSSSHH-------HHHHHHHHHHHHHSCCEEEEEESSCC-S-CCCCSSSEEEE
T ss_pred CCHHHHHHh--hcCCC----EEEEECCCCCCHH-------HHHHHHHhhcCcCCCcEEEEecccHh-h-hhccCceEEEe
Confidence 345677765 78888 7889999999999 9999999998887 899877665543 1 23456778877
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
.. +++. +..| +.+|+++|..+|+++++|||+
T Consensus 189 ~~------------------------------------~g~~------~~~~------~~~l~~~L~~~pd~illdE~~ 219 (372)
T 2ewv_A 189 RE------------------------------------VGED------TKSF------ADALRAALREDPDVIFVGEMR 219 (372)
T ss_dssp EE------------------------------------BTTT------BSCS------HHHHHHHTTSCCSEEEESCCC
T ss_pred ee------------------------------------cCCC------HHHH------HHHHHHHhhhCcCEEEECCCC
Confidence 41 2221 2334 469999999999999999999
No 132
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.02 E-value=9.5e-12 Score=103.50 Aligned_cols=138 Identities=12% Similarity=0.029 Sum_probs=80.3
Q ss_pred cccchhhhccH--HHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc----cccccc----ccccc-cHHhhcc
Q psy860 15 QFNGINEHLTA--QEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA----AQNSLL----MTNIM-HLFQYLS 83 (178)
Q Consensus 15 ~~~~v~~~~~~--g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~----g~i~~~----g~~~~-~~~~~~~ 83 (178)
+.+.|++.|.+ |+ ..+|+|+|||||| ||++.+.|+.+|++ |.+.++ +.+.. ...++ +
T Consensus 157 ~~~~v~~~v~~~lg~----k~~IvG~nGsGKS-------TLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~ 224 (365)
T 1lw7_A 157 YWKFIPKEARPFFAK----TVAILGGESSGKS-------VLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-P 224 (365)
T ss_dssp GGGGSCTTTGGGTCE----EEEEECCTTSHHH-------HHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-H
T ss_pred ChhhCCHHHHHhhhC----eEEEECCCCCCHH-------HHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-H
Confidence 35679999999 99 7889999999999 99999999999999 888764 32221 11222 3
Q ss_pred ceEEecCCCCCCCCCCHHHHH-----------HHHHHhcCCCCCChhHHHHHHHHHcCCCc-cccC---c----CCCCCh
Q psy860 84 GIGYCPQFNGINEHLTAQEML-----------ECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHR---V----SGRYSG 144 (178)
Q Consensus 84 ~ig~v~Q~~~l~~~ltv~e~l-----------~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-~~~~---~----~~~LSg 144 (178)
.|++++|++.++ ..|+.+|+ .+.....+ ..+..+..++...+..- ..+. + ...+|+
T Consensus 225 ~I~~~~q~~~~~-~~t~~~nl~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sl 299 (365)
T 1lw7_A 225 QMALGHQRYIDY-AVRHSHKIAFIDTDFITTQAFCIQYEG----KAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLG 299 (365)
T ss_dssp HHHHHHHHHHHH-HHHHCSSEEEESSCHHHHHHHHHHHHS----CCCHHHHHHHHHSCCSEEEEEECCCC----------
T ss_pred HHHHHHHHHHHH-HHhccCCEEEEeCCchHHHHHHHHHcC----CCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCc
Confidence 466666643211 11222211 11111111 11233344443333321 1121 1 135899
Q ss_pred HHHHHHHHHHHH---hC--CCCeEEeeCCC
Q psy860 145 GNKRKLSTAMAL---IG--DRDDGFQKLPF 169 (178)
Q Consensus 145 GqkQRv~IAraL---~~--~P~~lllDEPt 169 (178)
|++||..++++| .. ++.++++|||+
T Consensus 300 d~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 300 SQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 999999999999 66 89999999996
No 133
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.02 E-value=4.4e-12 Score=97.61 Aligned_cols=126 Identities=10% Similarity=-0.074 Sum_probs=76.3
Q ss_pred ccccchhh-hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 14 PQFNGINE-HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 14 ~~~~~v~~-~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
+.|+++.. .+++|+ +.+|.|+||+||| |++..+++...++.+.+.+.+.+... ..+....+++.+|
T Consensus 10 ~~Ld~~~~ggi~~G~----~~~i~G~~GsGKT-------tl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGF----FIALTGEPGTGKT-------IFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFE 78 (235)
T ss_dssp HHHHGGGTTSEETTC----EEEEECSTTSSHH-------HHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCG
T ss_pred hHHHHHhcCCCcCCC----EEEEEcCCCCCHH-------HHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHH
Confidence 78999998 899999 7789999999999 88888887766666665444432211 1111112222222
Q ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCC--eEEeeCC
Q psy860 91 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRD--DGFQKLP 168 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~--~lllDEP 168 (178)
..... .+.+ ++.....++ ... .....|.++.++...+.+...+|+ ++++|||
T Consensus 79 ~~~~~-~~~~---------------------~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~ 132 (235)
T 2w0m_A 79 EYIEK-KLII---------------------IDALMKEKE-DQW---SLVNLTPEELVNKVIEAKQKLGYGKARLVIDSV 132 (235)
T ss_dssp GGBTT-TEEE---------------------EECCC-----CTT---BCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETG
T ss_pred HHhhC-CEEE---------------------EeccccccC-cee---eecCCCHHHHHHHHHHHHHhhCCCceEEEEECc
Confidence 11000 0000 000000011 111 123449999999988888888999 9999999
Q ss_pred CCCC--CCCC
Q psy860 169 FSSQ--NLYN 176 (178)
Q Consensus 169 t~gL--D~~~ 176 (178)
|+++ |+..
T Consensus 133 ~~~~~~d~~~ 142 (235)
T 2w0m_A 133 SALFLDKPAM 142 (235)
T ss_dssp GGGSSSCGGG
T ss_pred hHhhcCCHHH
Confidence 9887 8743
No 134
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.93 E-value=1.4e-11 Score=101.62 Aligned_cols=121 Identities=10% Similarity=-0.005 Sum_probs=85.3
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc------HHhhc--cceEEecCCCC
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH------LFQYL--SGIGYCPQFNG 93 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~------~~~~~--~~ig~v~Q~~~ 93 (178)
..+.|+ +.+++|+||+||| |+++.+.++.+|++|.+.+.+.++.. ...++ .++.+++|...
T Consensus 125 ~~~~g~----vi~lvG~nGaGKT-------Tll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~ 193 (328)
T 3e70_C 125 KAEKPY----VIMFVGFNGSGKT-------TTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG 193 (328)
T ss_dssp SSCSSE----EEEEECCTTSSHH-------HHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT
T ss_pred cCCCCe----EEEEECCCCCCHH-------HHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc
Confidence 335678 7889999999999 99999999999999999999988643 22223 35669999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 94 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 94 l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
++|.+++++++.+...... . . -+++..|..+..+..+.+|| .+++++..++.++++|.+|
T Consensus 194 ~~p~~~v~e~l~~~~~~~~-d---~-----vliDtaG~~~~~~~l~~eL~-------~i~ral~~de~llvLDa~t 253 (328)
T 3e70_C 194 ADPAAVAYDAIQHAKARGI-D---V-----VLIDTAGRSETNRNLMDEMK-------KIARVTKPNLVIFVGDALA 253 (328)
T ss_dssp CCHHHHHHHHHHHHHHHTC-S---E-----EEEEECCSCCTTTCHHHHHH-------HHHHHHCCSEEEEEEEGGG
T ss_pred CCHHHHHHHHHHHHHhccc-h---h-----hHHhhccchhHHHHHHHHHH-------HHHHHhcCCCCEEEEecHH
Confidence 9999999999986543210 0 0 01222344333333444444 3889999888888999554
No 135
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.93 E-value=1.2e-10 Score=89.08 Aligned_cols=111 Identities=8% Similarity=-0.003 Sum_probs=69.4
Q ss_pred ccccchhh-hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 14 PQFNGINE-HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 14 ~~~~~v~~-~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
+.|+.+.. .++.|+ +..|.|++|+||| |++..+++ .... ++.|+..+.
T Consensus 7 ~~LD~~l~Ggi~~G~----~~~i~G~~GsGKT-------tl~~~l~~--~~~~------------------~v~~i~~~~ 55 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGV----LTQVYGPYASGKT-------TLALQTGL--LSGK------------------KVAYVDTEG 55 (220)
T ss_dssp HHHHHHTTSSBCTTS----EEEEECSTTSSHH-------HHHHHHHH--HHCS------------------EEEEEESSC
T ss_pred HHHHHhhcCCCcCCE----EEEEECCCCCCHH-------HHHHHHHH--HcCC------------------cEEEEECCC
Confidence 78898886 899999 7789999999999 88888877 2111 234444332
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHH--HHHHHHHHHHhCC-CCeEEeeCCC
Q psy860 93 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGN--KRKLSTAMALIGD-RDDGFQKLPF 169 (178)
Q Consensus 93 ~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq--kQRv~IAraL~~~-P~~lllDEPt 169 (178)
. .+... +.-.....+. . .+++++.+ .+.+.|+++ +|++..+++++.+ |+++++||||
T Consensus 56 ~----~~~~~-~~~~~~~~~~---~----~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 56 G----FSPER-LVQMAETRGL---N----PEEALSRF--------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp C----CCHHH-HHHHHHTTTC---C----HHHHHHHE--------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred C----CCHHH-HHHHHHhcCC---C----hHHHhhcE--------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 1 12211 1111111111 1 11223322 233455554 5678888899986 9999999999
Q ss_pred CCCCCC
Q psy860 170 SSQNLY 175 (178)
Q Consensus 170 ~gLD~~ 175 (178)
+.+|+.
T Consensus 116 ~~l~~~ 121 (220)
T 2cvh_A 116 AHYRAE 121 (220)
T ss_dssp CCTTGG
T ss_pred HHhhhc
Confidence 999974
No 136
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.88 E-value=2.3e-11 Score=99.19 Aligned_cols=126 Identities=11% Similarity=-0.059 Sum_probs=87.6
Q ss_pred ccccchhhhc-------------------cHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC--cccccccc--
Q psy860 14 PQFNGINEHL-------------------TAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP--FQAAQNSL-- 70 (178)
Q Consensus 14 ~~~~~v~~~~-------------------~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~--~~~g~i~~-- 70 (178)
+++++||+++ ..|+ +.+|.|+|||||| |+++.+.++.+ |++|.+.+
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~----iigI~G~~GsGKS-------Tl~~~L~~~l~~~~~~G~i~vi~ 117 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPY----IISIAGSVAVGKS-------TTARVLQALLSRWPEHRRVELIT 117 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCE----EEEEEECTTSSHH-------HHHHHHHHHHTTSTTCCCEEEEE
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCE----EEEEECCCCCCHH-------HHHHHHHHHHhhCCCCCeEEEEe
Confidence 6899999998 7777 7889999999999 99999999877 89999988
Q ss_pred -cccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHH
Q psy860 71 -LMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRK 149 (178)
Q Consensus 71 -~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR 149 (178)
++..... ..++.++++ |...+++.+++.+++.+......-. . .+ ..+....+. .+|
T Consensus 118 ~d~~~~~~--~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~--~------------~i----~~P~~~~~~--~~~ 174 (308)
T 1sq5_A 118 TDGFLHPN--QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGV--P------------NV----TAPVYSHLI--YDV 174 (308)
T ss_dssp GGGGBCCH--HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTC--S------------CE----EECCEETTT--TEE
T ss_pred cCCccCcH--HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCC--C------------ce----ecccccccc--cCc
Confidence 7765432 234568888 8878888899999998765553211 0 01 011111111 123
Q ss_pred HHHHHHHhCCCCeEEeeCCCCCCC
Q psy860 150 LSTAMALIGDRDDGFQKLPFSSQN 173 (178)
Q Consensus 150 v~IAraL~~~P~~lllDEPt~gLD 173 (178)
+..+.+.+.+|+++|+|.|....+
T Consensus 175 ~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 175 IPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp CTTCCEEEC-CCEEEEECTTTTCC
T ss_pred ccccceecCCCCEEEECchhhCCC
Confidence 322234456899999999998876
No 137
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.87 E-value=3.3e-14 Score=114.40 Aligned_cols=129 Identities=13% Similarity=0.026 Sum_probs=86.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc--HHhhccceEEecC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQ 90 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q 90 (178)
..+++++++.++.| ..|+||||+||| |+++.+.+...+ +.+.++|.++.. ..+..+.++++||
T Consensus 33 ~~~l~~~~l~~~~G------vlL~Gp~GtGKT-------tLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~ 97 (274)
T 2x8a_A 33 PDQFKALGLVTPAG------VLLAGPPGCGKT-------LLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQ 97 (274)
T ss_dssp HHHHHHTTCCCCSE------EEEESSTTSCHH-------HHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCe------EEEECCCCCcHH-------HHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHH
Confidence 45789999999988 459999999999 999999988765 567777776533 2233445777777
Q ss_pred CC-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 91 FN-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 91 ~~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
.. ...+.+++.|++......+. .... + ......++.+.+|||||+||+.|++|+..+|++| |||+
T Consensus 98 ~a~~~~p~i~~~Deid~~~~~r~------~~~~----~--~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al 163 (274)
T 2x8a_A 98 RAKNSAPCVIFFDEVDALCPRRS------DRET----G--ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAI 163 (274)
T ss_dssp HHHHTCSEEEEEETCTTTCC---------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHH
T ss_pred HHHhcCCCeEeeehhhhhhcccC------CCcc----h--HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhh
Confidence 63 33444555555433110000 0000 0 1234456677889999999999999999999985 8875
Q ss_pred C
Q psy860 170 S 170 (178)
Q Consensus 170 ~ 170 (178)
.
T Consensus 164 ~ 164 (274)
T 2x8a_A 164 L 164 (274)
T ss_dssp H
T ss_pred c
Confidence 3
No 138
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.84 E-value=5.7e-12 Score=98.27 Aligned_cols=69 Identities=10% Similarity=0.113 Sum_probs=48.9
Q ss_pred hhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--ccccccccccccccHHhhccceEEecCCCCCCC
Q psy860 19 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--QAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE 96 (178)
Q Consensus 19 v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~ 96 (178)
-.-+.+.|+ +.+|+|||||||| ||++.+.+..+| ..|.+.+.+++... ..+++++|+||++..|+
T Consensus 9 ~~~~~~~G~----ii~l~GpsGsGKS-------TLlk~L~g~~~p~~~~g~v~~ttr~~~~--~e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 9 HHHHMAQGT----LYIVSAPSGAGKS-------SLIQALLKTQPLYDTQVSVSHTTRQPRP--GEVHGEHYFFVNHDEFK 75 (219)
T ss_dssp ------CCC----EEEEECCTTSCHH-------HHHHHHHHHSCTTTEEECCCEECSCCCT--TCCBTTTBEECCHHHHH
T ss_pred ccccCCCCc----EEEEECCCCCCHH-------HHHHHHhccCCCCceEEEEEecCCCCCc--ccccCceEEECCHHHHH
Confidence 345678888 8889999999999 999999999885 68888887765432 23567999999865544
Q ss_pred CCCH
Q psy860 97 HLTA 100 (178)
Q Consensus 97 ~ltv 100 (178)
.+++
T Consensus 76 ~~~~ 79 (219)
T 1s96_A 76 EMIS 79 (219)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.77 E-value=5.5e-11 Score=103.32 Aligned_cols=51 Identities=14% Similarity=0.021 Sum_probs=46.2
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN 74 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~ 74 (178)
..+++++++.++.|+ ..+|.|+|||||| |+++.++++.+|+.|.+++++..
T Consensus 247 ~~~l~~l~~~v~~g~----~i~I~GptGSGKT-------TlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 247 SGVLAYLWLAIEHKF----SAIVVGETASGKT-------TTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHHTTC----CEEEEESTTSSHH-------HHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHHhCCC----EEEEECCCCCCHH-------HHHHHHHhhCCCCCCEEEEcCcc
Confidence 457899999999999 6779999999999 99999999999999999988764
No 140
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.73 E-value=4.4e-11 Score=101.49 Aligned_cols=126 Identities=15% Similarity=0.076 Sum_probs=78.3
Q ss_pred cccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCC---
Q psy860 15 QFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQF--- 91 (178)
Q Consensus 15 ~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~--- 91 (178)
.-++|+|+++.++ ..+|+|+||+||| ||++.+.+..+ . +.+.+.. .+...+++++++
T Consensus 146 ~~~~i~lelk~g~----~VgLVG~~gAGKS-------TLL~~Lsg~~~-~-----i~~~~ft---Tl~p~~G~V~~~~~~ 205 (416)
T 1udx_A 146 EKRRLRLELMLIA----DVGLVGYPNAGKS-------SLLAAMTRAHP-K-----IAPYPFT---TLSPNLGVVEVSEEE 205 (416)
T ss_dssp CEEEEEEEECCSC----SEEEECCGGGCHH-------HHHHHHCSSCC-E-----ECCCTTC---SSCCEEEEEECSSSC
T ss_pred eEeeeeeEEcCCC----EEEEECCCCCcHH-------HHHHHHHcCCc-c-----ccCcccc---eecceeeEEEecCcc
Confidence 4579999999999 7889999999999 99999988743 1 1111111 112234555443
Q ss_pred -------CCCCCCCCHHHHHHHHHHhcCCCCC--ChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 92 -------NGINEHLTAQEMLECFSALRGIPGV--KSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 92 -------~~l~~~ltv~e~l~~~~~~~~~~~~--~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
+.+..... ++ .++... +..++++.++..+++. ++++.+||+|++|++.+|++|+..|.+
T Consensus 206 ~~~l~DtpGli~~a~--~~-------~~L~~~fl~~~era~~lL~vvDls---~~~~~~ls~g~~el~~la~aL~~~P~I 273 (416)
T 1udx_A 206 RFTLADIPGIIEGAS--EG-------KGLGLEFLRHIARTRVLLYVLDAA---DEPLKTLETLRKEVGAYDPALLRRPSL 273 (416)
T ss_dssp EEEEEECCCCCCCGG--GS-------CCSCHHHHHHHTSSSEEEEEEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred eEEEEeccccccchh--hh-------hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEE
Confidence 22222100 00 000000 0000112223334443 567788999999999999999999999
Q ss_pred EEeeCCCCCCCCCC
Q psy860 163 GFQKLPFSSQNLYN 176 (178)
Q Consensus 163 lllDEPt~gLD~~~ 176 (178)
+++ |.+|+..
T Consensus 274 LVl----NKlDl~~ 283 (416)
T 1udx_A 274 VAL----NKVDLLE 283 (416)
T ss_dssp EEE----ECCTTSC
T ss_pred EEE----ECCChhh
Confidence 999 9999864
No 141
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.72 E-value=4.1e-09 Score=86.00 Aligned_cols=99 Identities=14% Similarity=0.127 Sum_probs=71.0
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCC
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEH 97 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ 97 (178)
.+++....++ +.+++|+||+||| |++..+.+...++.+.+.+.+.+....
T Consensus 96 ~~~~~~~~~~----vi~ivG~~GsGKT-------Tl~~~LA~~l~~~g~kV~lv~~D~~r~------------------- 145 (306)
T 1vma_A 96 KLNVPPEPPF----VIMVVGVNGTGKT-------TSCGKLAKMFVDEGKSVVLAAADTFRA------------------- 145 (306)
T ss_dssp CCCCCSSSCE----EEEEECCTTSSHH-------HHHHHHHHHHHHTTCCEEEEEECTTCH-------------------
T ss_pred CCcccCCCCe----EEEEEcCCCChHH-------HHHHHHHHHHHhcCCEEEEEccccccH-------------------
Confidence 3556667777 7789999999999 898999888877777765544332110
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHH---HHHHHHhCCCCeEEeeCCCC
Q psy860 98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKL---STAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv---~IAraL~~~P~~lllDEPt~ 170 (178)
... +....+.+.+++.. +...|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 146 -~a~------------------eqL~~~~~~~gl~~-----~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 146 -AAI------------------EQLKIWGERVGATV-----ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -HHH------------------HHHHHHHHHHTCEE-----ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -HHH------------------HHHHHHHHHcCCcE-----EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 001 12334455666643 345789999999 99999999999999999974
No 142
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.68 E-value=8.3e-09 Score=84.45 Aligned_cols=110 Identities=8% Similarity=-0.089 Sum_probs=51.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc-cCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR-FSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALR 111 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~-~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 111 (178)
..+.|++|+||| |+++.+.+ +..|+.|.+.+++.+.......+..+++++|.+.+..+.+- .
T Consensus 39 ~ll~Gp~G~GKT-------tl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~ 101 (354)
T 1sxj_E 39 LLLYGPNGTGKK-------TRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------M 101 (354)
T ss_dssp EEEECSTTSSHH-------HHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC------------
T ss_pred EEEECCCCCCHH-------HHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh----------c
Confidence 458899999999 99999998 78889999999887765443335678888887543211110 0
Q ss_pred CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCC
Q psy860 112 GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLY 175 (178)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~ 175 (178)
+. .....+.+.++.+.-....+... +||| +..+|+++|+|||++ ||+.
T Consensus 102 ~~---~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~ 149 (354)
T 1sxj_E 102 GN---NDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKD 149 (354)
T ss_dssp -----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHH
T ss_pred CC---cchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHH
Confidence 00 01112333333332111111111 5676 788999999999999 9875
No 143
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.56 E-value=8.3e-12 Score=99.86 Aligned_cols=129 Identities=11% Similarity=0.027 Sum_probs=80.8
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~ 91 (178)
.+++++++.++.| ..|+|++|+||| |+++.+.+... .+.+.+++.++... ...++.++++||.
T Consensus 63 ~~l~~~~~~~~~g------vll~Gp~GtGKT-------tl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 63 SRFHEMGARIPKG------VLLVGPPGVGKT-------HLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp HHHHHTTCCCCCE------EEEECCTTSSHH-------HHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe------EEEECCCcChHH-------HHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678888888877 459999999999 88898888764 66777777654321 1223356777776
Q ss_pred CC-CCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 92 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 92 ~~-l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
.. ..+.+++.|++...............+...+.+ ++...+|||||+||+.+++|+..+|++ +|++
T Consensus 128 ~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~ll~~lsgg~~~~~~i~~a~t~~p~~--ld~~ 194 (278)
T 1iy2_A 128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLLVEMDGFEKDTAIVVMAATNRPDI--LDPA 194 (278)
T ss_dssp HHTSCSEEEEEETHHHHHCC--------CHHHHHHH---------HHHHHHHTTCCTTCCEEEEEEESCTTS--SCHH
T ss_pred HHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH---------HHHHHHHhCCCCCCCEEEEEecCCchh--CCHh
Confidence 42 455667777775433211100000011111111 122345899999999999999999987 5655
No 144
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.48 E-value=1.5e-11 Score=96.82 Aligned_cols=130 Identities=11% Similarity=0.032 Sum_probs=80.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~ 91 (178)
.+++++++.++.| ..|+|++|+||| |+++.+.+... .+.+.+++.++... ...++.+++++|.
T Consensus 39 ~~~~~~~~~~~~g------~ll~G~~G~GKT-------tl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 39 SRFHEMGARIPKG------VLLVGPPGVGKT-------HLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp HHHHHTTCCCCSE------EEEECCTTSSHH-------HHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe------EEEECCCCCCHH-------HHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 5678888888877 459999999999 88898888764 56777777654321 1223356777776
Q ss_pred C-CCCCCCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCC
Q psy860 92 N-GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPF 169 (178)
Q Consensus 92 ~-~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt 169 (178)
. ...+.+++.|++...............+...+.+ ++....|||||+||+.+++|+..+|++ +|++.
T Consensus 104 ~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll~~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLLVEMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp HTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHHHHHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred HHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHHHHHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 4 2455666667664433221110000011111111 122345889999999999999999987 57654
No 145
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.48 E-value=1.7e-08 Score=78.12 Aligned_cols=50 Identities=4% Similarity=0.013 Sum_probs=34.8
Q ss_pred ccccchh-hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc--cCCc-----ccccccccccc
Q psy860 14 PQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR--FSPF-----QAAQNSLLMTN 74 (178)
Q Consensus 14 ~~~~~v~-~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~--~~~~-----~~g~i~~~g~~ 74 (178)
+.|+.+= -.++.|+ +..|.|+||+||| |++..+++ ..++ ..+.++++++.
T Consensus 11 ~~LD~~l~ggi~~G~----~~~i~G~~GsGKT-------tl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 11 KELDKLLQGGIETGS----ITEMFGEFRTGKT-------QICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHHTTTSEETTS----EEEEECCTTSSHH-------HHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhhcCCCcCCe----EEEEECCCCCcHH-------HHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 4455543 3688999 7779999999999 88888887 4554 34455555443
No 146
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.48 E-value=1e-10 Score=89.73 Aligned_cols=113 Identities=14% Similarity=0.080 Sum_probs=64.9
Q ss_pred ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcc---cccccccccccccHHhhccceEEecCCCCCCCCCC
Q psy860 23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQ---AAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLT 99 (178)
Q Consensus 23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~---~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~lt 99 (178)
.+.|+ +.+|+|+|||||| ||++.+.++.+|+ .|.+.+++........ ..++..+.
T Consensus 19 ~~~g~----~v~I~G~sGsGKS-------Tl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~--~~~~~~~~--------- 76 (208)
T 3c8u_A 19 QPGRQ----LVALSGAPGSGKS-------TLSNPLAAALSAQGLPAEVVPMDGFHLDNRLL--EPRGLLPR--------- 76 (208)
T ss_dssp CCSCE----EEEEECCTTSCTH-------HHHHHHHHHHHHTTCCEEEEESGGGBCCHHHH--GGGTCGGG---------
T ss_pred CCCCe----EEEEECCCCCCHH-------HHHHHHHHHHhhcCCceEEEecCCCcCCHHHH--HHhccccc---------
Confidence 46788 7889999999999 9999999887753 4555555443322110 00110000
Q ss_pred HHHHHHHHHHhcCCCCCChhHHHHHHHHHcC----CC-ccccCcCCCCChHHHHHHHHH-HHHhCCCCeEEeeCCC
Q psy860 100 AQEMLECFSALRGIPGVKSGPIIDYWIDLLG----LT-EYRHRVSGRYSGGNKRKLSTA-MALIGDRDDGFQKLPF 169 (178)
Q Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~----L~-~~~~~~~~~LSgGqkQRv~IA-raL~~~P~~lllDEPt 169 (178)
.+.+..-......+.+..+. +. +..++ ...+|+||+|++++| ++++.++.++++|||.
T Consensus 77 -----------~~~~~~~~~~~~~~~l~~l~~~~~i~~p~~d~-~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 77 -----------KGAPETFDFEGFQRLCHALKHQERVIYPLFDR-ARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----------TTSGGGBCHHHHHHHHHHHHHCSCEEEEEEET-TTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----------CCCCchhhHHHHHHHHHHHhcCCceecccCCc-cccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 00100001111222222221 11 11222 235799999999998 8999999999999984
No 147
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.48 E-value=1.1e-07 Score=76.95 Aligned_cols=105 Identities=11% Similarity=-0.024 Sum_probs=69.3
Q ss_pred cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCC
Q psy860 17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINE 96 (178)
Q Consensus 17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~ 96 (178)
++++|+ .|+ ..++.|+||+||| |+...+.+...++.+.+.+.+.+......
T Consensus 91 ~~i~~~--~~~----~i~i~g~~G~GKT-------T~~~~la~~~~~~~~~v~l~~~d~~~~~~---------------- 141 (295)
T 1ls1_A 91 RLPVLK--DRN----LWFLVGLQGSGKT-------TTAAKLALYYKGKGRRPLLVAADTQRPAA---------------- 141 (295)
T ss_dssp CCCCCC--SSE----EEEEECCTTTTHH-------HHHHHHHHHHHHTTCCEEEEECCSSCHHH----------------
T ss_pred ceeecC--CCe----EEEEECCCCCCHH-------HHHHHHHHHHHHcCCeEEEecCCcccHhH----------------
Confidence 678887 677 6779999999999 89899988887777777665544322110
Q ss_pred CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC-CCCCCC
Q psy860 97 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP-FSSQNL 174 (178)
Q Consensus 97 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP-t~gLD~ 174 (178)
. +.+ ..+.+..++.-..... .-+-.+.+|.+|+.+...+++++|+||| ++++|.
T Consensus 142 ---~-~ql------------------~~~~~~~~l~~~~~~~--~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~ 196 (295)
T 1ls1_A 142 ---R-EQL------------------RLLGEKVGVPVLEVMD--GESPESIRRRVEEKARLEARDLILVDTAGRLQIDE 196 (295)
T ss_dssp ---H-HHH------------------HHHHHHHTCCEEECCT--TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCH
T ss_pred ---H-HHH------------------HHhcccCCeEEEEcCC--CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccH
Confidence 0 000 0112334554221100 1122345788999998899999999999 999985
No 148
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.41 E-value=2.4e-08 Score=86.04 Aligned_cols=52 Identities=10% Similarity=-0.032 Sum_probs=48.7
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIM 76 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~ 76 (178)
.++|++|||+|++ | +.+|+|+|||||| ||++++.|+.+|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e----~~~liG~nGsGKS-------TLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-L----VTTLSGGNGAGKS-------TTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-S----EEEEECCTTSSHH-------HHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-c----eEEEECCCCCcHH-------HHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4689999999999 8 8889999999999 9999999999999999999998875
No 149
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.39 E-value=1.8e-11 Score=92.29 Aligned_cols=121 Identities=8% Similarity=-0.022 Sum_probs=70.5
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALR 111 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 111 (178)
+.+|+|+|||||| |+++.+.+ +..|.+++++.++... ..+++++|.....+..++++++.+.....
T Consensus 4 ii~l~G~~GaGKS-------Tl~~~L~~---~~~g~~~i~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (189)
T 2bdt_A 4 LYIITGPAGVGKS-------TTCKRLAA---QLDNSAYIEGDIINHM----VVGGYRPPWESDELLALTWKNITDLTVNF 69 (189)
T ss_dssp EEEEECSTTSSHH-------HHHHHHHH---HSSSEEEEEHHHHHTT----CCTTCCCGGGCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHH-------HHHHHHhc---ccCCeEEEcccchhhh----hccccccCccchhHHHHHHHHHHHHHHHH
Confidence 4578999999999 88888876 5567788887654221 23567777654444567777776643221
Q ss_pred CCCCCChhHHHHHHHHHcCCCccccCcCCCC--ChHHHHHHHHHH------HHhCCCCeEEeeCCCCCCCCCC
Q psy860 112 GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRY--SGGNKRKLSTAM------ALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L--SgGqkQRv~IAr------aL~~~P~~lllDEPt~gLD~~~ 176 (178)
...... .+++.+. .....+...++ |+||+|++.++. +++.+|+...+|+ ++|+..
T Consensus 70 ~~~~~~------~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 70 LLAQND------VVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp HHTTCE------EEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred HhcCCc------EEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 100000 0001010 01001112233 888888888888 8999999888884 788754
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.34 E-value=1.2e-09 Score=82.71 Aligned_cols=125 Identities=6% Similarity=-0.031 Sum_probs=68.4
Q ss_pred hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCCCCCCCC
Q psy860 20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQFNGINEH 97 (178)
Q Consensus 20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~~~l~~~ 97 (178)
|+++..|+ +.+|+|+|||||| |+++.+.++.+ .+.+.+...... ...+.+++|+||++..++.
T Consensus 1 s~~m~~g~----ii~l~Gp~GsGKS-------Tl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (205)
T 3tr0_A 1 SNAMNKAN----LFIISAPSGAGKT-------SLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQA 65 (205)
T ss_dssp ----CCCC----EEEEECCTTSCHH-------HHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHH
T ss_pred CCcCCCCc----EEEEECcCCCCHH-------HHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHH
Confidence 56677788 7889999999999 99999988864 344555444322 1235679999998766655
Q ss_pred CCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCC
Q psy860 98 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLP 168 (178)
Q Consensus 98 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEP 168 (178)
+++.+++.......+.......+.+.++++. +..-..+ +..|-+.-++....+|.+++++.|
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~-g~~vi~d--------~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 66 MVKEGAFLEHATIYERHYGTEKDWVLRQLKA-GRDVLLE--------IDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp HHHHTCEEEEEEETTEEEEEEHHHHHHHHHT-TCEEEEE--------CCHHHHHHHHHHCTTCEEEEEECS
T ss_pred HHhcCcEEeeeeeecccccchHHHHHHHHHc-CCeEEEE--------ECHHHHHHHHHhCCCcEEEEEECc
Confidence 5554433221111111111123345555543 1111111 233444445556667777877766
No 151
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.28 E-value=1.3e-07 Score=70.27 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=28.3
Q ss_pred hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccc
Q psy860 20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQ 67 (178)
Q Consensus 20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~ 67 (178)
+|.+..|+ ...|.|+||+||| |+++.+.+...++.|.
T Consensus 32 ~~~~~~g~----~~~l~G~~G~GKT-------tL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGK----GLTFVGSPGVGKT-------HLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCC----EEEECCSSSSSHH-------HHHHHHHHHHHHHSCC
T ss_pred hccccCCC----EEEEECCCCCCHH-------HHHHHHHHHHHHHcCC
Confidence 34556677 6679999999999 9999888876655543
No 152
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.26 E-value=2.9e-09 Score=94.07 Aligned_cols=149 Identities=14% Similarity=0.018 Sum_probs=89.9
Q ss_pred hhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc-ccccccccccccHHhhccce
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA-AQNSLLMTNIMHLFQYLSGI 85 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~-g~i~~~g~~~~~~~~~~~~i 85 (178)
++-+|-..+++++++.+..|+ ...|.|++|+||| |+++.+.+..++.. +.+.+.+..... ....+
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~----~vll~Gp~GtGKT-------tlar~ia~~l~~~~~~~~~~~~~~~~~---~~p~i 106 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR----HVLLIGEPGTGKS-------MLGQAMAELLPTETLEDILVFPNPEDE---NMPRI 106 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC----CEEEECCTTSSHH-------HHHHHHHHTSCCSSCEEEEEECCTTCT---TSCEE
T ss_pred ceEECchhhHhhccccccCCC----EEEEEeCCCCCHH-------HHHHHHhccCCcccCCeEEEeCCcccc---cCCcE
Confidence 455677789999999999998 7779999999999 99999999988776 555555544322 23357
Q ss_pred EEecCCCCCCCCCCHHHHHHHHHHhc----------------------C--C-CCCChhHHHHHHHHHcCCCccccCcCC
Q psy860 86 GYCPQFNGINEHLTAQEMLECFSALR----------------------G--I-PGVKSGPIIDYWIDLLGLTEYRHRVSG 140 (178)
Q Consensus 86 g~v~Q~~~l~~~ltv~e~l~~~~~~~----------------------~--~-~~~~~~~~~~~~l~~~~L~~~~~~~~~ 140 (178)
+++|+...- .+.+......... . . ......+......+.+|-.+......+
T Consensus 107 ~~~p~g~~~----~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g 182 (604)
T 3k1j_A 107 KTVPACQGR----RIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSG 182 (604)
T ss_dssp EEEETTHHH----HHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC---
T ss_pred EEEecchHH----HHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcC
Confidence 777764310 0111111000000 0 0 000000001112233443333333446
Q ss_pred CCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 141 RYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 141 ~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
.+|+|++|++..++....++.+|++||... |++
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~ 215 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSL 215 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCH
T ss_pred CccccccccccCceeeecCCCEEEEechhh-CCH
Confidence 799999999999999999999999999865 443
No 153
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.17 E-value=2.8e-07 Score=72.09 Aligned_cols=60 Identities=12% Similarity=-0.015 Sum_probs=41.0
Q ss_pred hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH----------HhhccceEEec
Q psy860 20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL----------FQYLSGIGYCP 89 (178)
Q Consensus 20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~----------~~~~~~ig~v~ 89 (178)
+++++. + +.+|+|||||||| ||+..+.++..|++|.|.++|.++... ...+.+++|++
T Consensus 22 ~~~~~~-~----~~~i~GpnGsGKS-------Tll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~ 89 (227)
T 1qhl_A 22 TFDLDE-L----VTTLSGGNGAGKS-------TTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSM 89 (227)
T ss_dssp EECHHH-H----HHHHHSCCSHHHH-------HHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEE
T ss_pred EEEEcC-c----EEEEECCCCCCHH-------HHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEE
Confidence 455555 5 6779999999999 999999999999999999999877321 12356799999
Q ss_pred CC
Q psy860 90 QF 91 (178)
Q Consensus 90 Q~ 91 (178)
|+
T Consensus 90 ~~ 91 (227)
T 1qhl_A 90 LD 91 (227)
T ss_dssp EE
T ss_pred Ee
Confidence 74
No 154
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.05 E-value=6.4e-07 Score=65.33 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 25 AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 25 ~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
.|+ ...|.|++|+||| ||++.+.+...+
T Consensus 35 ~g~----~~~l~G~~G~GKT-------tL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQ----FIYVWGEEGAGKS-------HLLQAWVAQALE 62 (149)
T ss_dssp CCS----EEEEESSSTTTTC-------HHHHHHHHHHHT
T ss_pred CCC----EEEEECCCCCCHH-------HHHHHHHHHHHh
Confidence 566 6779999999999 899988877554
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.03 E-value=7.7e-06 Score=66.16 Aligned_cols=91 Identities=15% Similarity=0.206 Sum_probs=59.5
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCCCCCCCCHHHHHHHHHHhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALR 111 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~e~l~~~~~~~ 111 (178)
..+++|+||+||| |++..+.+...++.|. ++.++.+++. ..++.+.+..+....
T Consensus 107 vi~lvG~~GsGKT-------Tl~~~LA~~l~~~~G~----------------~V~lv~~D~~---r~~a~eqL~~~~~~~ 160 (296)
T 2px0_A 107 YIVLFGSTGAGKT-------TTLAKLAAISMLEKHK----------------KIAFITTDTY---RIAAVEQLKTYAELL 160 (296)
T ss_dssp EEEEEESTTSSHH-------HHHHHHHHHHHHTTCC----------------CEEEEECCCS---STTHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHHHHhcCC----------------EEEEEecCcc---cchHHHHHHHHHHhc
Confidence 6779999999999 8888888877665553 4777777752 345566655433222
Q ss_pred CCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 112 GIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 112 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
++..... .+ ...-+.++++ +.+|+++|+| |+|+|+..
T Consensus 161 ------------------gl~~~~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~ 197 (296)
T 2px0_A 161 ------------------QAPLEVC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKD 197 (296)
T ss_dssp ------------------TCCCCBC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTS
T ss_pred ------------------CCCeEec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhh
Confidence 2211110 12 2333556664 4999999999 99999864
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.92 E-value=8e-08 Score=72.18 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCCCeEEeeCCCCCCCCCCC
Q psy860 149 KLSTAMALIGDRDDGFQKLPFSSQNLYNT 177 (178)
Q Consensus 149 Rv~IAraL~~~P~~lllDEPt~gLD~~~~ 177 (178)
.+.+|++++.+|+++++| ||++|+.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v 179 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNV 179 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCH
Confidence 467899999999999999 999998763
No 157
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.91 E-value=3e-08 Score=83.04 Aligned_cols=136 Identities=6% Similarity=-0.046 Sum_probs=80.9
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFN 92 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~ 92 (178)
.++++++|+.++.|+ +.+|.|++|+||| |+++.+.+.. .|.+... +... ......++++||..
T Consensus 156 ~~~l~~~~~~i~~~~----~i~l~G~~GsGKS-------Tl~~~l~~~~---~g~~~~~--~~~~-~~~~~~lg~~~q~~ 218 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR----YWLFKGPIDSGKT-------TLAAALLELC---GGKALNV--NLPL-DRLNFELGVAIDQF 218 (377)
T ss_dssp HHHHHHHHHCCTTCC----EEEEECSTTSSHH-------HHHHHHHHHH---CCEEECC--SSCT-TTHHHHHGGGTTCS
T ss_pred HHHHHhcccccCCCC----EEEEECCCCCCHH-------HHHHHHHhhc---CCcEEEE--eccc-hhHHHHHHHhcchh
Confidence 468999999999999 7889999999999 8888888754 3444321 1110 01111367777765
Q ss_pred C-CCCCCCHHHHHHHHHHhcCCCCCCh---hHHHHHHHH---H------------cCCC-ccccCcCCCCChHHHHHHHH
Q psy860 93 G-INEHLTAQEMLECFSALRGIPGVKS---GPIIDYWID---L------------LGLT-EYRHRVSGRYSGGNKRKLST 152 (178)
Q Consensus 93 ~-l~~~ltv~e~l~~~~~~~~~~~~~~---~~~~~~~l~---~------------~~L~-~~~~~~~~~LSgGqkQRv~I 152 (178)
. ++++.+....+ .+....... ...+...++ . .-+. ...+.....+++|++||+..
T Consensus 219 ~~l~dd~~~~~~~-----~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~ 293 (377)
T 1svm_A 219 LVVFEDVKGTGGE-----SRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVK 293 (377)
T ss_dssp CEEETTCCCSTTT-----TTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEE
T ss_pred HHHHHHHHHHHHH-----HhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhh
Confidence 3 23333221110 000000000 011122222 0 0011 23455677899999999999
Q ss_pred HHHHhCCCCeEE-eeCCCC
Q psy860 153 AMALIGDRDDGF-QKLPFS 170 (178)
Q Consensus 153 AraL~~~P~~ll-lDEPt~ 170 (178)
+.+++..|++++ ||+|+.
T Consensus 294 ~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 294 QIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp EEECCCCHHHHHHHHTCTH
T ss_pred hhccCCCCCeEEEEeCCHH
Confidence 888899999998 999985
No 158
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.77 E-value=1.1e-05 Score=67.93 Aligned_cols=49 Identities=8% Similarity=0.004 Sum_probs=32.9
Q ss_pred ccccchh-hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhh--hccCCcccc-----ccccccc
Q psy860 14 PQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSA--IRFSPFQAA-----QNSLLMT 73 (178)
Q Consensus 14 ~~~~~v~-~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~--~~~~~~~~g-----~i~~~g~ 73 (178)
+.|+.+= =-|+.|+ +..|.|++|+||| ||+..+ .+..+++.| .++++++
T Consensus 165 ~~LD~lLgGGI~~Ge----i~~I~G~sGsGKT-------TLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 165 KNLDTLLGGGVETGS----ITELFGEFRTGKS-------QLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp HHHHHHTTTSEETTS----EEEEEESTTSSHH-------HHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred hhHHHHhcCCcCCCc----EEEEEcCCCCChH-------HHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 3444432 3678899 7779999999999 888843 455665544 4455544
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.72 E-value=2.3e-08 Score=86.79 Aligned_cols=133 Identities=10% Similarity=-0.024 Sum_probs=73.3
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc--cCCccccccccccccccc--HHhhccceEEecCCCC
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR--FSPFQAAQNSLLMTNIMH--LFQYLSGIGYCPQFNG 93 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~--~~~~~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~~~ 93 (178)
-|++++.++. -..|.|.+|+||| +++++++. +...+.+++.+.+.+.+. +..+. .+ ++
T Consensus 159 pv~ldL~~~p----HlLIaG~TGSGKS-------t~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-~l------Ph 220 (512)
T 2ius_A 159 PVVADLAKMP----HLLVAGTTGSGAS-------VGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-GI------PH 220 (512)
T ss_dssp EEEEEGGGSC----SEEEECCTTSSHH-------HHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-TC------TT
T ss_pred EEEEEcccCc----eEEEECCCCCCHH-------HHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-cC------Cc
Confidence 3566777776 5679999999999 77776654 344445666555544432 11111 11 11
Q ss_pred CCC--CCCHHHHHHHHHHhcCCCCCChhHHHHHHHHHcCCCcccc---CcCCCCChHHHHHH----------HHHHHHhC
Q psy860 94 INE--HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRH---RVSGRYSGGNKRKL----------STAMALIG 158 (178)
Q Consensus 94 l~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~---~~~~~LSgGqkQRv----------~IAraL~~ 158 (178)
+.. -.+..+........ ..+..++. ++++.+|+.+..+ +....+|+||+|+. .+|+++..
T Consensus 221 l~~~Vvtd~~~a~~~L~~~----~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~ 295 (512)
T 2ius_A 221 LLTEVVTDMKDAANALRWC----VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKK 295 (512)
T ss_dssp BSSSCBCSHHHHHHHHHHH----HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCC
T ss_pred ccceeecCHHHHHHHHHHH----HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhcccccccc
Confidence 110 01122211111111 12334443 6778888875433 22346889988753 35667788
Q ss_pred CCC-eEEeeCCCCCCC
Q psy860 159 DRD-DGFQKLPFSSQN 173 (178)
Q Consensus 159 ~P~-~lllDEPt~gLD 173 (178)
.|. ++++||+++-+|
T Consensus 296 lP~ivlvIDE~~~ll~ 311 (512)
T 2ius_A 296 EPYIVVLVDEFADLMM 311 (512)
T ss_dssp CCEEEEEEETHHHHHH
T ss_pred CCcEEEEEeCHHHHHh
Confidence 898 899999976554
No 160
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.71 E-value=3.2e-08 Score=83.28 Aligned_cols=121 Identities=11% Similarity=0.026 Sum_probs=75.0
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc------------cCCcccccccccccccccHHh---hccce-
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR------------FSPFQAAQNSLLMTNIMHLFQ---YLSGI- 85 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~------------~~~~~~g~i~~~g~~~~~~~~---~~~~i- 85 (178)
.+..|+ ..+|+|+||+||| ||++.+.+ ...|+.|.+.+.+..+..+.+ .++.+
T Consensus 16 ~v~~g~----~vgiVG~pnaGKS-------TL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~ 84 (392)
T 1ni3_A 16 RPGNNL----KTGIVGMPNVGKS-------TFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVP 84 (392)
T ss_dssp SSSSCC----EEEEEECSSSSHH-------HHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEEC
T ss_pred cccCCC----EEEEECCCCCCHH-------HHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccC
Confidence 445565 5679999999999 88887777 346888888777654332222 12223
Q ss_pred --EEecCCCCCCCCCCHHHHH--HHHHHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCC-
Q psy860 86 --GYCPQFNGINEHLTAQEML--ECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDR- 160 (178)
Q Consensus 86 --g~v~Q~~~l~~~ltv~e~l--~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P- 160 (178)
.++.+.++++...+..+.+ .+...++... .++..++.. .+..+..+|++. +|
T Consensus 85 ~~i~lvD~pGl~~~~s~~e~L~~~fl~~ir~~d---------~il~Vvd~~--~d~~i~~v~~~~------------dP~ 141 (392)
T 1ni3_A 85 AFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVD---------AIYQVVRAF--DDAEIIHVEGDV------------DPI 141 (392)
T ss_dssp EEEEEECTGGGCCCCCSSSSSCHHHHHHHTTCS---------EEEEEEECC--CTTCSSCCSSSS------------CHH
T ss_pred cceEEEeccccccCCcHHHHHHHHHHHHHHHHH---------HHHHHHhcc--ccceeeeecccc------------Ccc
Confidence 4677888888777765544 3333333211 011112221 144555577653 99
Q ss_pred -CeEEeeCCCCCCCCCC
Q psy860 161 -DDGFQKLPFSSQNLYN 176 (178)
Q Consensus 161 -~~lllDEPt~gLD~~~ 176 (178)
+++++|||++++|+..
T Consensus 142 ~di~ildeel~~~D~~~ 158 (392)
T 1ni3_A 142 RDLSIIVDELLIKDAEF 158 (392)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhhchhhhHHHHHHH
Confidence 9999999999998753
No 161
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.68 E-value=5.7e-07 Score=67.63 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=22.1
Q ss_pred HHHHHHHhCCCCeEEeeCCCCCCCCCC
Q psy860 150 LSTAMALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 150 v~IAraL~~~P~~lllDEPt~gLD~~~ 176 (178)
...|++++.+|+++++| ||++|+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~ 154 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTN 154 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTT
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCC
Confidence 35689999999999999 99999875
No 162
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.66 E-value=4.3e-05 Score=65.05 Aligned_cols=126 Identities=8% Similarity=-0.004 Sum_probs=73.8
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
+.|+++..-++.|+ +..|.|++|+||| |++..++....+..|. .+.|+.-+
T Consensus 191 ~~LD~~~gGl~~G~----liiI~G~pG~GKT-------tl~l~ia~~~~~~~g~----------------~Vl~~s~E-- 241 (454)
T 2r6a_A 191 TELDRMTSGFQRSD----LIIVAARPSVGKT-------AFALNIAQNVATKTNE----------------NVAIFSLE-- 241 (454)
T ss_dssp HHHHHHHSSBCTTC----EEEEECCTTSCHH-------HHHHHHHHHHHHHSSC----------------CEEEEESS--
T ss_pred HHHHhhcCCCCCCC----EEEEECCCCCCHH-------HHHHHHHHHHHHhCCC----------------cEEEEECC--
Confidence 67899998899999 7889999999999 7776666543332231 12222211
Q ss_pred CCCCCCHHHHHHHH-H--------Hh-cCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHh--CCCC
Q psy860 94 INEHLTAQEMLECF-S--------AL-RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALI--GDRD 161 (178)
Q Consensus 94 l~~~ltv~e~l~~~-~--------~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~--~~P~ 161 (178)
++..+...-. . .+ .+.-..+..+++.+.++.++..+..-.....+|.++.+ ..++.++ .+|+
T Consensus 242 ----~s~~~l~~r~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~ 315 (454)
T 2r6a_A 242 ----MSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLG 315 (454)
T ss_dssp ----SCHHHHHHHHHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCC
T ss_pred ----CCHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCC
Confidence 1111111100 0 00 11111122334555556555444333335679999887 5566665 7899
Q ss_pred eEEeeCCCCCCCC
Q psy860 162 DGFQKLPFSSQNL 174 (178)
Q Consensus 162 ~lllDEPt~gLD~ 174 (178)
++++|+++...++
T Consensus 316 livID~l~~~~~~ 328 (454)
T 2r6a_A 316 MIVIDYLQLIQGS 328 (454)
T ss_dssp EEEEECGGGSCCS
T ss_pred EEEEccHHHhccC
Confidence 9999999987754
No 163
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.51 E-value=1.5e-07 Score=81.58 Aligned_cols=127 Identities=11% Similarity=0.072 Sum_probs=78.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH--HhhccceEEecCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL--FQYLSGIGYCPQF 91 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~--~~~~~~ig~v~Q~ 91 (178)
.+++++++.++.| ..|.|++|+||| +|++.+.+... .+.+.+++.++... ....+.+..+||.
T Consensus 54 ~~~~~lg~~ip~G------vLL~GppGtGKT-------tLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~ 118 (499)
T 2dhr_A 54 SRFHEMGARIPKG------VLLVGPPGVGKT-------HLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 118 (499)
T ss_dssp GGTTTTSCCCCSE------EEEECSSSSSHH-------HHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTT
T ss_pred hhhhhccCCCCce------EEEECCCCCCHH-------HHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHH
Confidence 5788888888887 458999999999 88888887653 55667777655321 1122346667776
Q ss_pred CC-CCCCCCHHHHHHHHHHhcC--CC--CCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEee
Q psy860 92 NG-INEHLTAQEMLECFSALRG--IP--GVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK 166 (178)
Q Consensus 92 ~~-l~~~ltv~e~l~~~~~~~~--~~--~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD 166 (178)
.. ..+...+.|++........ .. ..+..+.+.+++ ..||||++|+..|++|...+|++ +|
T Consensus 119 a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL-------------~~Ldg~~~~~~viviAatn~p~~--LD 183 (499)
T 2dhr_A 119 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VEMDGFEKDTAIVVMAATNRPDI--LD 183 (499)
T ss_dssp SSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHH-------------HHGGGCCSSCCCEEEECCSCGGG--SC
T ss_pred HHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHH-------------HHhcccccCccEEEEEecCChhh--cC
Confidence 43 3444455555432211111 00 001112223333 34789999999999999999987 88
Q ss_pred CCCC
Q psy860 167 LPFS 170 (178)
Q Consensus 167 EPt~ 170 (178)
|+..
T Consensus 184 ~aLl 187 (499)
T 2dhr_A 184 PALL 187 (499)
T ss_dssp TTTS
T ss_pred cccc
Confidence 8764
No 164
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.50 E-value=1.1e-06 Score=73.25 Aligned_cols=125 Identities=12% Similarity=0.060 Sum_probs=67.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCC-----------cccccccccccccccHHhhccceEEecCCCCCCCCCCHH
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSP-----------FQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQ 101 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~-----------~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~l~~~ltv~ 101 (178)
.+|+|++|+||| ||++.+.+... ++.+.+.++|..+ .+....|++.+.+. ..+.
T Consensus 182 V~lvG~~naGKS-------TLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v----~l~DT~G~i~~lp~----~lve 246 (364)
T 2qtf_A 182 IGIVGYTNSGKT-------SLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI----MLVDTVGFIRGIPP----QIVD 246 (364)
T ss_dssp EEEECBTTSSHH-------HHHHHHHCC-----------CCSCEEEEEETTEEE----EEEECCCBCSSCCG----GGHH
T ss_pred EEEECCCCCCHH-------HHHHHHHCCCccccCCcccccCCEEEEEEECCEEE----EEEeCCCchhcCCH----HHHH
Confidence 679999999999 88888877643 3445555555332 11223444433221 1121
Q ss_pred HHHHHHHHhc---------CCCCCC--hhH---HHHHHHHHcCCCccc----cCcCCCCChHHHHHHHHH----HHH-hC
Q psy860 102 EMLECFSALR---------GIPGVK--SGP---IIDYWIDLLGLTEYR----HRVSGRYSGGNKRKLSTA----MAL-IG 158 (178)
Q Consensus 102 e~l~~~~~~~---------~~~~~~--~~~---~~~~~l~~~~L~~~~----~~~~~~LSgGqkQRv~IA----raL-~~ 158 (178)
..-....... ...... ..+ .+.++++.+++.+.. ..++..+|++++|++.++ +++ ..
T Consensus 247 ~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 247 AFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp HHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 1111111110 111111 111 235667777764332 445677898888988877 665 44
Q ss_pred CCCeEEeeCCCCCCCCCC
Q psy860 159 DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 159 ~P~~lllDEPt~gLD~~~ 176 (178)
+|++ +|+|++|..+
T Consensus 327 ~~~~----~~~SA~~g~g 340 (364)
T 2qtf_A 327 IFDV----IPISALKRTN 340 (364)
T ss_dssp EEEE----EECBTTTTBS
T ss_pred CCcE----EEEECCCCcC
Confidence 4454 8999999764
No 165
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.48 E-value=1.7e-05 Score=64.83 Aligned_cols=81 Identities=6% Similarity=-0.003 Sum_probs=61.5
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccH------Hhh-----ccc
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHL------FQY-----LSG 84 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~------~~~-----~~~ 84 (178)
++++||.+..++ ..++.|+||+||| |++..+.+...++.+.+.+.+.+.... ..+ +.+
T Consensus 95 ~~~l~~~~~~~~----vI~ivG~~G~GKT-------T~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~ 163 (320)
T 1zu4_A 95 KYRIDFKENRLN----IFMLVGVNGTGKT-------TSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNK 163 (320)
T ss_dssp -CCCCCCTTSCE----EEEEESSTTSSHH-------HHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTT
T ss_pred ccCccccCCCCe----EEEEECCCCCCHH-------HHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCC
Confidence 368999999998 7779999999999 888888888888888888877766432 233 567
Q ss_pred eEEe-cCCCCCCCCCCHHHHHHHH
Q psy860 85 IGYC-PQFNGINEHLTAQEMLECF 107 (178)
Q Consensus 85 ig~v-~Q~~~l~~~ltv~e~l~~~ 107 (178)
+.++ +|.....+..++.+++...
T Consensus 164 l~vip~~~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 164 VDLVKANKLNADPASVVFDAIKKA 187 (320)
T ss_dssp EEEECCSSTTCCHHHHHHHHHHHH
T ss_pred ceEEeCCCCCCCHHHHHHHHHHHH
Confidence 9999 7765555555677777654
No 166
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.45 E-value=1.3e-05 Score=61.91 Aligned_cols=38 Identities=5% Similarity=-0.050 Sum_probs=21.0
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh-ccC
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI-RFS 61 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~-~~~ 61 (178)
.+..+++||+++.|+ +.+|+|+|||||| |+++.+. ++.
T Consensus 14 ~~~~~~~sl~v~~G~----ii~l~Gp~GsGKS-------Tl~~~L~~~~~ 52 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGV----ILVLSSPSGCGKT-------TVANKLLEKQK 52 (231)
T ss_dssp --------CCEECCC----EEEEECSCC-----------CHHHHHHC---
T ss_pred hcccCCCCcccCCCC----EEEEECCCCCCHH-------HHHHHHHhcCC
Confidence 456899999999999 7889999999999 7888888 776
No 167
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.38 E-value=1.4e-05 Score=62.87 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=46.7
Q ss_pred cHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh---ccCCccccccc--------cccccccc---HHhhccceEEec
Q psy860 24 TAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI---RFSPFQAAQNS--------LLMTNIMH---LFQYLSGIGYCP 89 (178)
Q Consensus 24 ~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~---~~~~~~~g~i~--------~~g~~~~~---~~~~~~~ig~v~ 89 (178)
..|+ +.+|.|++||||| |+.+.+. |+..++.|.+. .+|.++.+ ..++++.+++++
T Consensus 25 ~~g~----~I~I~G~~GsGKS-------Tl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 93 (252)
T 4e22_A 25 AIAP----VITVDGPSGAGKG-------TLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRF 93 (252)
T ss_dssp TTSC----EEEEECCTTSSHH-------HHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEE
T ss_pred CCCc----EEEEECCCCCCHH-------HHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEE
Confidence 5666 7889999999999 8888887 99899999998 77776632 456777899999
Q ss_pred CCC
Q psy860 90 QFN 92 (178)
Q Consensus 90 Q~~ 92 (178)
|..
T Consensus 94 ~~~ 96 (252)
T 4e22_A 94 VSQ 96 (252)
T ss_dssp EEE
T ss_pred ecC
Confidence 753
No 168
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.34 E-value=2.1e-05 Score=59.31 Aligned_cols=46 Identities=17% Similarity=-0.050 Sum_probs=18.9
Q ss_pred ChhhhhhhccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 1 MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
||-+.|+++- ...+++||||++..++ +..|.|++||||| |+.+.+.
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~----~i~l~G~~GsGKs-------Tl~~~La 46 (199)
T 3vaa_A 1 MHHHHHHSSG-VDLGTENLYFQSNAMV----RIFLTGYMGAGKT-------TLGKAFA 46 (199)
T ss_dssp ------------------------CCC----EEEEECCTTSCHH-------HHHHHHH
T ss_pred CCcccCCCCC-CCCCCCceeEecCCCC----EEEEEcCCCCCHH-------HHHHHHH
Confidence 6888897664 4679999999999998 7889999999999 5555554
No 169
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.32 E-value=1.8e-05 Score=65.44 Aligned_cols=25 Identities=16% Similarity=-0.075 Sum_probs=20.5
Q ss_pred HHHHHHHHHhCC--CCeEEeeCCCCCC
Q psy860 148 RKLSTAMALIGD--RDDGFQKLPFSSQ 172 (178)
Q Consensus 148 QRv~IAraL~~~--P~~lllDEPt~gL 172 (178)
|-+.++++++.+ |+++++|||++.+
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 445678888755 9999999999987
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.23 E-value=5.8e-06 Score=62.49 Aligned_cols=70 Identities=6% Similarity=-0.139 Sum_probs=48.1
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhh-ccceEEecCCCCCCCCCCH
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQY-LSGIGYCPQFNGINEHLTA 100 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~-~~~ig~v~Q~~~l~~~ltv 100 (178)
..+.|+ +.+|.|+|||||| |+++.+.+.. |.+.+++.++...... +..+++++|+....+.+++
T Consensus 25 ~~~~g~----~i~l~G~~GsGKS-------Tl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 89 (200)
T 4eun_A 25 TGEPTR----HVVVMGVSGSGKT-------TIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRS 89 (200)
T ss_dssp ---CCC----EEEEECCTTSCHH-------HHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred cCCCCc----EEEEECCCCCCHH-------HHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHH
Confidence 344566 7889999999999 8888887654 7778888776543222 2346888887666666677
Q ss_pred HHHHHH
Q psy860 101 QEMLEC 106 (178)
Q Consensus 101 ~e~l~~ 106 (178)
.+++..
T Consensus 90 ~~~~~~ 95 (200)
T 4eun_A 90 LAEWMD 95 (200)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.20 E-value=3.4e-06 Score=64.98 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=24.2
Q ss_pred ccccch-hhhccHHHHHHHhhhhhCCCCCCcc
Q psy860 14 PQFNGI-NEHLTAQEMLECFSALRGIPGVKSG 44 (178)
Q Consensus 14 ~~~~~v-~~~~~~g~~~~~~~~i~G~~g~gk~ 44 (178)
+.|+++ +--++.|+ +..|.|++|+|||
T Consensus 10 ~~LD~~l~gGl~~G~----~~~i~G~~GsGKT 37 (247)
T 2dr3_A 10 PGVDEILHGGIPERN----VVLLSGGPGTGKT 37 (247)
T ss_dssp TTHHHHTTTSEETTC----EEEEEECTTSSHH
T ss_pred hhHHHHcCCCCCCCc----EEEEECCCCCCHH
Confidence 678888 77899999 7779999999999
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.13 E-value=1.7e-05 Score=59.84 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=44.7
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc--cccccccc
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN--SLLMTNIM 76 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i--~~~g~~~~ 76 (178)
..|..++.+.+++..+.|+ +.+|.|++||||| |+.+.+.+.+. ..|.+ ++++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~g~----~i~l~G~sGsGKS-------Tl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 8 HECSVEKVDRQRLLDQKGC----VIWVTGLSGSGKS-------TLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp --CCCCHHHHHHHHTSCCE----EEEEECSTTSSHH-------HHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cccccCHHHHHHhcCCCCe----EEEEECCCCCCHH-------HHHHHHHHHHH-hcCceEEEecCchhh
Confidence 3455678889999999999 7889999999999 88888888766 66777 78877653
No 173
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.86 E-value=0.00014 Score=53.68 Aligned_cols=67 Identities=9% Similarity=0.019 Sum_probs=44.6
Q ss_pred ccc--cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccc---ccccHH-----hhcc
Q psy860 14 PQF--NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMT---NIMHLF-----QYLS 83 (178)
Q Consensus 14 ~~~--~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~---~~~~~~-----~~~~ 83 (178)
..+ +++++.+..| +.+|+|+||+||| |++..+..++.++.+.....+. .+..-. ..+.
T Consensus 13 ~~~~~~~~~~~~~~g-----~~~i~G~NGsGKS-------tll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 80 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-----FTAIVGANGSGKS-------NIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYA 80 (182)
T ss_dssp GGGCSSCEEEECCSS-----EEEEEECTTSSHH-------HHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCE
T ss_pred EeecCccEEEecCCC-----cEEEECCCCCCHH-------HHHHHHHHHHcCCcccccccccchheeecccccCCCCceE
Confidence 345 7888888877 6779999999999 8888888777666655422221 111100 1234
Q ss_pred ceEEecCCC
Q psy860 84 GIGYCPQFN 92 (178)
Q Consensus 84 ~ig~v~Q~~ 92 (178)
.|.+++|++
T Consensus 81 ~v~~~f~~~ 89 (182)
T 3kta_A 81 EVAIYFNNE 89 (182)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEeCC
Confidence 688889875
No 174
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.85 E-value=9.7e-05 Score=60.85 Aligned_cols=107 Identities=10% Similarity=0.184 Sum_probs=66.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhccceEEecCCCC
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNG 93 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~~ig~v~Q~~~ 93 (178)
+.|+.+.--+..|+ +..|.|++|+||| |+...+..-.... | ..+.|+.=
T Consensus 34 ~~LD~~~gGl~~G~----LiiIaG~pG~GKT-------t~al~ia~~~a~~-g----------------~~Vl~fSl--- 82 (338)
T 4a1f_A 34 VQLDNYTSGFNKGS----LVIIGARPSMGKT-------SLMMNMVLSALND-D----------------RGVAVFSL--- 82 (338)
T ss_dssp HHHHHHHCSBCTTC----EEEEEECTTSCHH-------HHHHHHHHHHHHT-T----------------CEEEEEES---
T ss_pred hHHHHHhcCCCCCc----EEEEEeCCCCCHH-------HHHHHHHHHHHHc-C----------------CeEEEEeC---
Confidence 56777776789999 7779999999999 6655544211101 1 12444321
Q ss_pred CCCCCCHHHHHHHH-HHhcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCCCC
Q psy860 94 INEHLTAQEMLECF-SALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172 (178)
Q Consensus 94 l~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~gL 172 (178)
.++..+...-. ....+ +++....+ +.||.++.+|+..|...+.++++.+.|+|...+
T Consensus 83 ---Ems~~ql~~Rlls~~~~----------------v~~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si 140 (338)
T 4a1f_A 83 ---EMSAEQLALRALSDLTS----------------INMHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI 140 (338)
T ss_dssp ---SSCHHHHHHHHHHHHHC----------------CCHHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred ---CCCHHHHHHHHHHHhhC----------------CCHHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence 23444332211 11111 11112222 479999999999999999999999999997654
Q ss_pred C
Q psy860 173 N 173 (178)
Q Consensus 173 D 173 (178)
|
T Consensus 141 ~ 141 (338)
T 4a1f_A 141 E 141 (338)
T ss_dssp H
T ss_pred H
Confidence 3
No 175
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.85 E-value=0.00015 Score=54.34 Aligned_cols=34 Identities=15% Similarity=0.079 Sum_probs=26.7
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA 66 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g 66 (178)
+|..|+ +.+|.|+|||||| |+++.+.+...|+.+
T Consensus 2 ~i~~g~----~i~l~G~~GsGKS-------Tl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGL----LIVLSGPSGVGKG-------TVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCC----EEEEECSTTSCHH-------HHHHHHHHCTTCCEE
T ss_pred CCCCCC----EEEEECCCCCCHH-------HHHHHHHHhhCCCeE
Confidence 456677 7789999999999 888988888766555
No 176
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.77 E-value=1.3e-06 Score=71.37 Aligned_cols=49 Identities=10% Similarity=0.021 Sum_probs=36.6
Q ss_pred hhccCccccccchhhhccHHHHHHHh--hhhhCCCCCCccchHHHHHHHhhhhhccCCcccc
Q psy860 7 LSGIGYCPQFNGINEHLTAQEMLECF--SALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA 66 (178)
Q Consensus 7 ~~~~~~~~~~~~v~~~~~~g~~~~~~--~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g 66 (178)
.+-+|-..+++.++..++.|+ + ..+.|++|+||| |+++.+.+...+..+
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~----~~~~ll~Gp~G~GKT-------tla~~la~~l~~~~~ 75 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK----LPHLLFYGPPGTGKT-------STIVALAREIYGKNY 75 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC----CCCEEEECSSSSSHH-------HHHHHHHHHHHTTSH
T ss_pred HHhcCcHHHHHHHHHHHhcCC----CceEEEECCCCCCHH-------HHHHHHHHHHcCCCc
Confidence 345566678899999999998 5 668899999999 777776665444333
No 177
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.76 E-value=1.5e-05 Score=65.79 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=32.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc--cCCccccccccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR--FSPFQAAQNSLL 71 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~--~~~~~~g~i~~~ 71 (178)
..+|++++++++ ..+++|.+|+||| |++..++| +.+...|.++..
T Consensus 24 ~~~l~~i~~~lp-------~I~vvG~~~sGKS-------SLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 24 SSALPTLWDSLP-------AIAVVGGQSSGKS-------SVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp SCCC----CCCC-------EEEEECBTTSSHH-------HHHHHHHTSCCSCCCSSSCCCS
T ss_pred ccccccccccCC-------EEEEECCCCCcHH-------HHHHHHhCCCcCCCCCCcccCc
Confidence 468999999998 4779999999999 99999998 556666665433
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.76 E-value=0.00018 Score=53.51 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.2
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
..+|+|||||||| |+++.+.++.++
T Consensus 3 ii~l~GpsGaGKs-------Tl~~~L~~~~~~ 27 (186)
T 3a00_A 3 PIVISGPSGTGKS-------TLLKKLFAEYPD 27 (186)
T ss_dssp CEEEESSSSSSHH-------HHHHHHHHHCGG
T ss_pred EEEEECCCCCCHH-------HHHHHHHhhCCc
Confidence 4568999999999 888988888773
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.71 E-value=0.00017 Score=56.85 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=31.0
Q ss_pred ccccccchhhhccH---HHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 12 YCPQFNGINEHLTA---QEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 12 ~~~~~~~v~~~~~~---g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..++|++|||+|.. |+ ..+|+|++||||| |+.+.+.+
T Consensus 31 ~~~~l~~~~~~i~~~l~g~----~i~l~G~~GsGKS-------Tl~~~La~ 70 (250)
T 3nwj_A 31 EQQILKKKAEEVKPYLNGR----SMYLVGMMGSGKT-------TVGKIMAR 70 (250)
T ss_dssp -CHHHHHHHHTTHHHHTTC----CEEEECSTTSCHH-------HHHHHHHH
T ss_pred cchhhhhhhhhhhhhcCCC----EEEEECCCCCCHH-------HHHHHHHH
Confidence 35799999999999 99 7889999999999 66665554
No 180
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.62 E-value=0.0003 Score=53.10 Aligned_cols=25 Identities=4% Similarity=-0.007 Sum_probs=20.3
Q ss_pred HHH-HHhCCCCeEEeeCCCCCCCCCC
Q psy860 152 TAM-ALIGDRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 152 IAr-aL~~~P~~lllDEPt~gLD~~~ 176 (178)
.|+ +++.+|.+++|||||+++|..+
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~ 141 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTET 141 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSC
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCC
Confidence 455 7888888999999999998754
No 181
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.36 E-value=3.3e-05 Score=63.23 Aligned_cols=43 Identities=5% Similarity=-0.015 Sum_probs=30.6
Q ss_pred cccccchhhhccHHHH--HHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860 13 CPQFNGINEHLTAQEM--LECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP 62 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~--~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~ 62 (178)
..++++++..+..++. .-++.+|.|+|||||| |+++++.++..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKS-------Tl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKS-------TTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHH-------HHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHH-------HHHHHHHHHhc
Confidence 3567777777665530 1124779999999999 88888888754
No 182
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.15 E-value=0.0012 Score=54.33 Aligned_cols=40 Identities=13% Similarity=-0.025 Sum_probs=30.4
Q ss_pred ccCcCCCCChHHHHHHHHHHHHhCCCCeEEee-CCCCCCCCC
Q psy860 135 RHRVSGRYSGGNKRKLSTAMALIGDRDDGFQK-LPFSSQNLY 175 (178)
Q Consensus 135 ~~~~~~~LSgGqkQRv~IAraL~~~P~~lllD-EPt~gLD~~ 175 (178)
.+..+..+|++++|++. +.+...++-++++| +|++++|..
T Consensus 225 ~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~ 265 (357)
T 2e87_A 225 LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLE 265 (357)
T ss_dssp SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHH
T ss_pred cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHH
Confidence 34556778999988776 56666777888999 998888754
No 183
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.66 E-value=0.00025 Score=51.91 Aligned_cols=49 Identities=10% Similarity=-0.081 Sum_probs=30.9
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccccccHHhhcc-ceEEecCC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLS-GIGYCPQF 91 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~~~~~~~-~ig~v~Q~ 91 (178)
+..|.|++||||| |+.+.+.+.. |.+.+++.++......++ .+|+.+|+
T Consensus 10 ~i~l~G~~GsGKS-------Tl~~~l~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 10 IYVLMGVSGSGKS-------AVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLND 59 (175)
T ss_dssp EEEEECSTTSCHH-------HHHHHHHHHH----TCEEEEGGGGCCHHHHHHHHTTCCCCH
T ss_pred EEEEEcCCCCCHH-------HHHHHHHHhh----CcEEEeCccccchHHHHHhhcCcCCCc
Confidence 6779999999999 7777776543 556677766543222211 24555554
No 184
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.44 E-value=0.01 Score=50.88 Aligned_cols=27 Identities=15% Similarity=-0.161 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHhCCCCeEEeeCCCC
Q psy860 144 GGNKRKLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 144 gGqkQRv~IAraL~~~P~~lllDEPt~ 170 (178)
+++++|..+++|....|.+|++||+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDA 119 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhh
Confidence 678889999999999999999999943
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.43 E-value=0.00063 Score=55.10 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=23.6
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCcc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSG 44 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~ 44 (178)
+.|+++.--+.+|+ +..|.|++|+|||
T Consensus 56 ~~LD~~lgGl~~G~----l~li~G~pG~GKT 82 (315)
T 3bh0_A 56 TELDRMTYGYKRRN----FVLIAARPSMGKT 82 (315)
T ss_dssp HHHHHHHSSBCTTC----EEEEECCTTSSHH
T ss_pred HHHHhhcCCCCCCc----EEEEEeCCCCCHH
Confidence 56888877799999 7779999999999
No 186
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=95.34 E-value=0.0027 Score=48.81 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=33.2
Q ss_pred hhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860 19 INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI 75 (178)
Q Consensus 19 v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~ 75 (178)
-+.+.+.|+ +.+|.|+|||||| |+++.+.+. .|.+.+.+++.
T Consensus 13 ~~~~~~~g~----~i~i~G~~GsGKS-------Tl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPF----TVLIEGNIGSGKT-------TYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCE----EEEEECSTTSCHH-------HHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCce----EEEEECCCCCCHH-------HHHHHHHhc----cCCeEEEecCH
Confidence 344667788 8889999999999 999998887 56677766654
No 187
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.31 E-value=0.0017 Score=49.22 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=37.1
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc---CCcccccccc--------ccccccc---HHhhccceEEecCCC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF---SPFQAAQNSL--------LMTNIMH---LFQYLSGIGYCPQFN 92 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~---~~~~~g~i~~--------~g~~~~~---~~~~~~~ig~v~Q~~ 92 (178)
..+|.|++||||| |+.+.+.+. ..++.|.+.. .|.++.+ ..++++.+++++|++
T Consensus 7 ~i~i~G~~GsGKS-------Tl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 7 VITIDGPSGAGKG-------TLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 4679999999999 666655543 3678888766 4554432 345667788888753
No 188
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.60 E-value=0.0048 Score=45.44 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=23.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCc-ccccc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF-QAAQN 68 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~-~~g~i 68 (178)
+.+|+|||||||| ||++.+.+..++ ..+.+
T Consensus 7 ~i~i~GpsGsGKS-------TL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 7 TLVLLGAHGVGRR-------HIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHCTTTEECCC
T ss_pred EEEEECCCCCCHH-------HHHHHHHhhCCccEEEee
Confidence 6779999999999 888888887653 34444
No 189
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=94.37 E-value=0.0018 Score=53.67 Aligned_cols=81 Identities=11% Similarity=-0.004 Sum_probs=53.3
Q ss_pred ccccchhh--hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc-cccccccccHHhhccceEEecC
Q psy860 14 PQFNGINE--HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN-SLLMTNIMHLFQYLSGIGYCPQ 90 (178)
Q Consensus 14 ~~~~~v~~--~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i-~~~g~~~~~~~~~~~~ig~v~Q 90 (178)
+.|+.+-- -++.|+ +..|.|++|+||| ||+.+++....+..|.+ +++++...... +.+++|+.+|
T Consensus 47 ~~LD~~Lg~GGi~~G~----i~~I~GppGsGKS-------TLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~ 114 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGR----IVEIFGQESSGKT-------TLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLK 114 (356)
T ss_dssp HHHHHHTSSSSEETTE----EEEEEESTTSSHH-------HHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGG
T ss_pred HHHHHHhccCCccCCc----EEEEECCCCCCHH-------HHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchh
Confidence 34555433 577888 5669999999999 88888777655555654 66666544332 3456787777
Q ss_pred CCCCCCCCCHHHHHHH
Q psy860 91 FNGINEHLTAQEMLEC 106 (178)
Q Consensus 91 ~~~l~~~ltv~e~l~~ 106 (178)
+..+....++.+.+..
T Consensus 115 ~l~i~~~~~~e~~l~~ 130 (356)
T 3hr8_A 115 SLLISQPDHGEQALEI 130 (356)
T ss_dssp GCEEECCSSHHHHHHH
T ss_pred hhhhhhccCHHHHHHH
Confidence 7655556677665543
No 190
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.33 E-value=0.0037 Score=46.89 Aligned_cols=41 Identities=7% Similarity=0.024 Sum_probs=30.9
Q ss_pred ccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860 23 LTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN 74 (178)
Q Consensus 23 ~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~ 74 (178)
...|+ +.+|.|++||||| |+++.+.+..++..|.+.+.+.+
T Consensus 19 ~~~~~----~i~i~G~~GsGKs-------tl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRL----VLGIDGLSRSGKT-------TLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSE----EEEEEECTTSSHH-------HHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCe----EEEEECCCCCCHH-------HHHHHHHHHHhhcCCeEEEeccC
Confidence 45566 7789999999999 88888888776667776554443
No 191
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.11 E-value=0.039 Score=46.78 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=22.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQN 68 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i 68 (178)
+..+.|++|+||| |++..+.....+..+.+
T Consensus 99 vI~lvG~~GsGKT-------Tt~~kLA~~l~~~G~kV 128 (433)
T 3kl4_A 99 IIMLVGVQGSGKT-------TTAGKLAYFYKKRGYKV 128 (433)
T ss_dssp EEEECCCTTSCHH-------HHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHHHHcCCeE
Confidence 5678899999999 77777776655554444
No 192
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.01 E-value=0.0027 Score=51.93 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=37.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM 72 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g 72 (178)
..+++++++++..+. ..++.|++|+||| |++..+.+...+..+.+.+.+
T Consensus 43 ~~~~~~l~~~~~~~~----~i~i~G~~g~GKS-------Tl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 43 TQLLDAIMPYCGNTL----RLGVTGTPGAGKS-------TFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHHGGGCSCSE----EEEEEECTTSCHH-------HHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCcccCCCE----EEEEEcCCCCCHH-------HHHHHHHHHHHhcCCeEEEEe
Confidence 467889999999988 7789999999999 777777766555555544433
No 193
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.83 E-value=0.01 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=18.8
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP 62 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~ 62 (178)
+.+|.||||+||| ||++.+.+..+
T Consensus 21 ~ivl~GPSGaGKs-------TL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRS-------HIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHCT
T ss_pred EEEEECcCCCCHH-------HHHHHHHhhCC
Confidence 6789999999999 66666665543
No 194
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=93.80 E-value=0.0057 Score=53.20 Aligned_cols=47 Identities=21% Similarity=0.130 Sum_probs=36.2
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLM 72 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g 72 (178)
.++.++++++ .|+ ...+.||+|+||| |+++.+.+.+.+..+.+.+.+
T Consensus 97 ~~l~~~~~~~-~g~----~vll~Gp~GtGKT-------tlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGP----ILCLAGPPGVGKT-------SLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSC----EEEEESSSSSSHH-------HHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCC----EEEEECCCCCCHH-------HHHHHHHHhcCCCeEEEEecc
Confidence 3556666666 455 5669999999999 888988888777778876665
No 195
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.75 E-value=0.0036 Score=54.70 Aligned_cols=43 Identities=9% Similarity=-0.125 Sum_probs=34.8
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc-cc-ccccccc
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA-QN-SLLMTNI 75 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g-~i-~~~g~~~ 75 (178)
.+..|+ ..+|+|+|||||| |+++.+.+.+.|++| .+ ++++.++
T Consensus 365 ~~~~G~----iI~LiG~sGSGKS-------TLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGF----TVFFTGLSGAGKS-------TLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCE----EEEEEESSCHHHH-------HHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccce----EEEEECCCCChHH-------HHHHHHHHhhcccCCceEEEECCcHH
Confidence 456777 6789999999999 999999998888876 56 4777655
No 196
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.48 E-value=0.01 Score=48.72 Aligned_cols=41 Identities=7% Similarity=-0.240 Sum_probs=28.0
Q ss_pred CcCCCCChHHHHHHHHHHHHh-CCCCeEEeeC---CC------CCCCCCCC
Q psy860 137 RVSGRYSGGNKRKLSTAMALI-GDRDDGFQKL---PF------SSQNLYNT 177 (178)
Q Consensus 137 ~~~~~LSgGqkQRv~IAraL~-~~P~~lllDE---Pt------~gLD~~~~ 177 (178)
+.+..+|+|++|+..+++++. .+|++++||| |+ +++|+..+
T Consensus 254 ~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r 304 (365)
T 1lw7_A 254 TQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQR 304 (365)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSH
T ss_pred HHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHH
Confidence 344456778888888888874 6999999999 65 58898754
No 197
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.37 E-value=0.01 Score=49.09 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=27.4
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..++++++++..| +.+|+|+||+||| |++..+.+
T Consensus 15 ~~~~~~~~~~~~g-----~~~i~G~nG~GKt-------tll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-----VTGIYGENGAGKT-------NLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE-----EEEEECCTTSSHH-------HHHHHHHH
T ss_pred cceeeeEEEEcCC-----eEEEECCCCCChh-------HHHHHHHH
Confidence 5688999999988 5679999999999 55555543
No 198
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.96 E-value=0.015 Score=43.75 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.1
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
+.+|.||||+||| |+++.+.+..++
T Consensus 10 ~i~l~GpsGsGKs-------Tl~~~L~~~~~~ 34 (208)
T 3tau_A 10 LIVLSGPSGVGKG-------TVREAVFKDPET 34 (208)
T ss_dssp EEEEECCTTSCHH-------HHHHHHHHSTTC
T ss_pred EEEEECcCCCCHH-------HHHHHHHhhCCC
Confidence 6789999999999 888888777655
No 199
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=92.84 E-value=0.015 Score=48.87 Aligned_cols=34 Identities=9% Similarity=0.189 Sum_probs=25.5
Q ss_pred hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccc
Q psy860 21 EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQA 65 (178)
Q Consensus 21 ~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~ 65 (178)
+++..++ +.+|+|+||+||| |++..+.++..+++
T Consensus 21 ~~~~~~~----~~~i~G~nG~GKs-------tll~ai~~~~~~~~ 54 (430)
T 1w1w_A 21 VGFGESN----FTSIIGPNGSGKS-------NMMDAISFVLGVRS 54 (430)
T ss_dssp EECTTCS----EEEEECSTTSSHH-------HHHHHHHHHTTC--
T ss_pred EEecCCC----EEEEECCCCCCHH-------HHHHHHHhhhcccc
Confidence 4466677 8889999999999 88887777665543
No 200
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.66 E-value=0.014 Score=44.92 Aligned_cols=37 Identities=11% Similarity=0.120 Sum_probs=21.8
Q ss_pred cccchhhhcc---HHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860 15 QFNGINEHLT---AQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSP 62 (178)
Q Consensus 15 ~~~~v~~~~~---~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~ 62 (178)
-|.++|+.+. .|. +.++.|++||||| |+++.+.....
T Consensus 12 ~~~~~~~~~~~~~~g~----~i~i~G~~GsGKs-------T~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSA----FITFEGPEGSGKT-------TVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCE----EEEEECCTTSCHH-------HHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCe----EEEEEcCCCCCHH-------HHHHHHHHHHh
Confidence 5888888887 776 8899999999999 55555554433
No 201
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=91.83 E-value=0.019 Score=49.39 Aligned_cols=32 Identities=16% Similarity=0.280 Sum_probs=26.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhh
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSA 57 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~ 57 (178)
..++++++++..| +.+|+|+||+||| ||+..+
T Consensus 49 ~~~~~~~l~f~~g-----~n~i~G~NGaGKS-------~lleAl 80 (517)
T 4ad8_A 49 ATITQLELELGGG-----FCAFTGETGAGKS-------IIVDAL 80 (517)
T ss_dssp TTBSCEEEECCCS-----EEEEEESHHHHHH-------HHTHHH
T ss_pred cceeeEEEecCCC-----eEEEEcCCCCCHH-------HHHHHH
Confidence 4678899999887 6789999999999 665554
No 202
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.34 E-value=0.13 Score=44.09 Aligned_cols=41 Identities=12% Similarity=0.031 Sum_probs=29.5
Q ss_pred ccCcCCCCChHHHHHHHHHHHHh--C---------------CCCeEEeeCCCCCCCCCC
Q psy860 135 RHRVSGRYSGGNKRKLSTAMALI--G---------------DRDDGFQKLPFSSQNLYN 176 (178)
Q Consensus 135 ~~~~~~~LSgGqkQRv~IAraL~--~---------------~P~~lllDEPt~gLD~~~ 176 (178)
.++..+.+||||+|..-+|.+.+ + .-++++|||. +-+|...
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~ 430 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMS 430 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHH
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHH
Confidence 34457889999999765555433 2 2368999999 9999753
No 203
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=91.04 E-value=0.033 Score=49.55 Aligned_cols=60 Identities=13% Similarity=-0.082 Sum_probs=39.6
Q ss_pred hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc--cccccccccccccc--HHhhccceEEecCCC
Q psy860 21 EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF--QAAQNSLLMTNIMH--LFQYLSGIGYCPQFN 92 (178)
Q Consensus 21 ~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~--~~g~i~~~g~~~~~--~~~~~~~ig~v~Q~~ 92 (178)
+.++.++ ..+|+|++|+||| ||+..+.+...+ ..|++ .+|..+.+ ..+.++++++.+|..
T Consensus 4 ~~~~~~~----~i~IiG~~gaGKT-------TLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~ 67 (665)
T 2dy1_A 4 EGGAMIR----TVALVGHAGSGKT-------TLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVA 67 (665)
T ss_dssp --CCCEE----EEEEEESTTSSHH-------HHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEE
T ss_pred CccCCCc----EEEEECCCCChHH-------HHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecce
Confidence 4556666 5779999999999 888888866443 56776 55555443 234456777776654
No 204
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.95 E-value=0.038 Score=41.21 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=22.2
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccC
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFS 61 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~ 61 (178)
.+..++ ..+|.|++||||| |+.+.+.+..
T Consensus 17 ~~~~~~----~i~i~G~~GsGKS-------Tl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTF----IIGISGVTNSGKT-------TLAKNLQKHL 45 (207)
T ss_dssp CSCCCE----EEEEEESTTSSHH-------HHHHHHHTTS
T ss_pred cCCCCe----EEEEECCCCCCHH-------HHHHHHHHhc
Confidence 344565 6779999999999 7777777654
No 205
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=90.89 E-value=0.063 Score=45.12 Aligned_cols=36 Identities=14% Similarity=0.086 Sum_probs=26.3
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCC------------ccccccccccccc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSP------------FQAAQNSLLMTNI 75 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~------------~~~g~i~~~g~~~ 75 (178)
.+|+|++|+||| ||++.+.+... +..|.+.++|..+
T Consensus 183 vaivG~~gvGKS-------TLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 183 VAIVGRPNVGKS-------TLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEECSTTSSHH-------HHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred EEEECCCCCCHH-------HHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 679999999999 88888877632 4556666676643
No 206
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.74 E-value=0.017 Score=43.49 Aligned_cols=46 Identities=11% Similarity=-0.145 Sum_probs=32.6
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc--cccccccc
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA--QNSLLMTN 74 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g--~i~~~g~~ 74 (178)
.-.+.+..|. +..+.|++|+||| |+.+.+.+...|+.| .+.+++..
T Consensus 17 r~~~~~~~~~----~i~~~G~~GsGKs-------T~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 17 RTELRNQRGL----TIWLTGLSASGKS-------TLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHHHHTSSCE----EEEEECSTTSSHH-------HHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred hhcccCCCCC----EEEEECCCCCCHH-------HHHHHHHHHhccccCCcEEEECChH
Confidence 3345666776 7889999999999 777777766665666 55565543
No 207
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=90.65 E-value=0.033 Score=39.90 Aligned_cols=26 Identities=8% Similarity=0.178 Sum_probs=18.3
Q ss_pred cchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860 17 NGINEHLTAQEMLECFSALRGIPGVKSGPII 47 (178)
Q Consensus 17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~ 47 (178)
++.++++..| +.+|+|+||+|||+++
T Consensus 15 ~~~~i~f~~g-----~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 15 SDTVVEFKEG-----INLIIGQNGSGKSSLL 40 (149)
T ss_dssp SSEEEECCSE-----EEEEECCTTSSHHHHH
T ss_pred cceEEEcCCC-----eEEEECCCCCCHHHHH
Confidence 3444555554 6789999999999433
No 208
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.85 E-value=0.042 Score=44.99 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=27.8
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN 74 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~ 74 (178)
..+|+|++|+||| ||+..+.+...++.+.+.+.+.+
T Consensus 76 ~v~lvG~pgaGKS-------TLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 76 RVGLSGPPGAGKS-------TFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEEEcCCCCCHH-------HHHHHHHHHhhhcCCeEEEEeec
Confidence 5789999999999 88888887766666666555543
No 209
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.82 E-value=0.063 Score=38.53 Aligned_cols=24 Identities=13% Similarity=-0.080 Sum_probs=19.2
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP 62 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~ 62 (178)
+.+|.|++||||| |+.+.+.+...
T Consensus 6 ~i~l~G~~GsGKS-------Tl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKS-------TIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHH-------HHHHHHHHHTT
T ss_pred eEEEECCCCCCHH-------HHHHHHHHHhC
Confidence 5679999999999 77777776543
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=89.77 E-value=0.042 Score=44.04 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=34.9
Q ss_pred cc-hhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccc
Q psy860 17 NG-INEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNI 75 (178)
Q Consensus 17 ~~-v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~ 75 (178)
++ ++++.+ ++ +.++.|++|+||| |++..+.+...+..+.+.+.+.+.
T Consensus 89 ~~~i~~~~~-~~----vi~i~G~~G~GKT-------T~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PY----VIMLVGVQGTGKT-------TTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SE----EEEEECSSCSSTT-------HHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCC-Ce----EEEEECCCCCCHH-------HHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 788776 77 6778999999999 777877777666666665555443
No 211
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.58 E-value=0.028 Score=41.63 Aligned_cols=35 Identities=9% Similarity=0.003 Sum_probs=28.8
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.++++++|+..+..+ .+++|++|+||| ||+..+.+
T Consensus 13 ~~~l~~~~~~~~~~k-----i~lvG~~~vGKS-------sLi~~l~~ 47 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-----LVFLGLDNAGKT-------TLLHMLKD 47 (198)
T ss_dssp CHHHHHHTCTTCCEE-----EEEEEETTSSHH-------HHHHHHSC
T ss_pred HHHHHHhhccCCCcE-----EEEECCCCCCHH-------HHHHHHhc
Confidence 478999999988776 579999999999 77776654
No 212
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.23 E-value=0.037 Score=50.12 Aligned_cols=39 Identities=3% Similarity=-0.148 Sum_probs=34.1
Q ss_pred cCcCCCCChHHHHHHHHHHHHhCCCCeEEeeCCCC-CCCC
Q psy860 136 HRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFS-SQNL 174 (178)
Q Consensus 136 ~~~~~~LSgGqkQRv~IAraL~~~P~~lllDEPt~-gLD~ 174 (178)
+..+..+|.|+.+|..++++++.+++++|+|||.. +||.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~ 224 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLAT 224 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHH
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccch
Confidence 44566789999999999999999999999999996 7763
No 213
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=89.18 E-value=0.043 Score=46.35 Aligned_cols=48 Identities=8% Similarity=0.004 Sum_probs=37.0
Q ss_pred cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCccccccccccccccc
Q psy860 17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTNIMH 77 (178)
Q Consensus 17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~~~~ 77 (178)
+++++. .++ +.++.|++|+||| |+...+.+...++.+.+.+.+.+...
T Consensus 91 ~~i~l~--~~~----vi~i~G~~GsGKT-------T~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 91 RLPVLK--DRN----LWFLVGLQGSGKT-------TTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCCC--SSE----EEEEECCTTSSHH-------HHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred ccccCC--CCe----EEEEECCCCCCHH-------HHHHHHHHHHHHcCCeEEEeeccccC
Confidence 567777 566 6778899999999 88888888877777777666655433
No 214
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.97 E-value=0.39 Score=38.65 Aligned_cols=24 Identities=21% Similarity=0.156 Sum_probs=18.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
..|.|++|+||| |+++.+.+...+
T Consensus 47 ~li~G~~G~GKT-------tl~~~l~~~~~~ 70 (389)
T 1fnn_A 47 ATLLGRPGTGKT-------VTLRKLWELYKD 70 (389)
T ss_dssp EEEECCTTSSHH-------HHHHHHHHHHTT
T ss_pred EEEECCCCCCHH-------HHHHHHHHHHhh
Confidence 458899999999 888877765443
No 215
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=87.27 E-value=0.087 Score=44.31 Aligned_cols=32 Identities=9% Similarity=0.051 Sum_probs=27.4
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
|+++.+..|+ ..+|+|++|+||+ ||++.+.+.
T Consensus 166 D~~~pi~rGQ----r~~IvG~sG~GKT-------tLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQ----RGLIVAPPKAGKT-------MLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTC----EEEEECCSSSSHH-------HHHHHHHHH
T ss_pred eeeeeecCCc----EEEEecCCCCChh-------HHHHHHHHH
Confidence 8999999999 7889999999999 666666554
No 216
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.26 E-value=0.044 Score=39.84 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=19.0
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
+..+.|++||||| |+.+.+.+.+++
T Consensus 7 ~i~l~G~~GsGKS-------T~~~~L~~~l~~ 31 (179)
T 2pez_A 7 TVWLTGLSGAGKT-------TVSMALEEYLVC 31 (179)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHHhh
Confidence 6679999999999 776766655433
No 217
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=86.82 E-value=0.35 Score=40.59 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=21.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCcc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSG 44 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~ 44 (178)
+.|+.+.--+..|+ +..|.|++|+|||
T Consensus 188 ~~LD~~lgGl~~G~----l~ii~G~pg~GKT 214 (444)
T 2q6t_A 188 KELDQLIGTLGPGS----LNIIAARPAMGKT 214 (444)
T ss_dssp HHHHHHHCCCCTTC----EEEEEECTTSCHH
T ss_pred HhhhhhcCCcCCCc----EEEEEeCCCCCHH
Confidence 45666665688898 6779999999999
No 218
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=86.04 E-value=0.1 Score=39.15 Aligned_cols=26 Identities=12% Similarity=0.226 Sum_probs=18.8
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHH
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIID 48 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~ 48 (178)
+.++.+..| +..|.|+||+|||+++.
T Consensus 16 ~~~i~f~~~-----~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 16 DTVVEFKEG-----INLIIGQNGSGKSSLLD 41 (203)
T ss_dssp SEEEECCSE-----EEEEECCTTSSHHHHHH
T ss_pred ceEEEeCCC-----eEEEEcCCCCCHHHHHH
Confidence 444555554 77899999999995553
No 219
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=85.97 E-value=0.19 Score=40.37 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=18.7
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSP 62 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~ 62 (178)
...|.|++|+||| |+++.+.+...
T Consensus 47 ~vli~G~~G~GKT-------tl~~~l~~~~~ 70 (386)
T 2qby_A 47 NIFIYGLTGTGKT-------AVVKFVLSKLH 70 (386)
T ss_dssp CEEEEECTTSSHH-------HHHHHHHHHHH
T ss_pred eEEEECCCCCCHH-------HHHHHHHHHHH
Confidence 4668899999999 78877766543
No 220
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=85.31 E-value=0.11 Score=42.06 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=17.8
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPII 47 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~ 47 (178)
+..+++..| +.+|+|+||+|||+++
T Consensus 16 ~~~i~f~~~-----~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 16 DTVVEFKEG-----INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCSE-----EEEEECCTTSSHHHHH
T ss_pred CeEEcCCCC-----eEEEECCCCCCHHHHH
Confidence 344555554 6789999999999333
No 221
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.19 E-value=0.0018 Score=51.11 Aligned_cols=36 Identities=11% Similarity=-0.054 Sum_probs=30.7
Q ss_pred CcCCCCChHHHHHHHHHHHHhCCCCe--EEeeCCCCCCCC
Q psy860 137 RVSGRYSGGNKRKLSTAMALIGDRDD--GFQKLPFSSQNL 174 (178)
Q Consensus 137 ~~~~~LSgGqkQRv~IAraL~~~P~~--lllDEPt~gLD~ 174 (178)
++.-.+|+| ||+++++++..+|++ +|+||.|+.+|.
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~ 205 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYS 205 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHH
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHH
Confidence 333457888 899999999999999 999999998875
No 222
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=85.15 E-value=0.063 Score=41.75 Aligned_cols=52 Identities=21% Similarity=0.058 Sum_probs=37.5
Q ss_pred hcCCCCCChhHHHHHHHHHcCCCccccCcCCCCChHHHHHHHHHHHHhCCCCe
Q psy860 110 LRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDD 162 (178)
Q Consensus 110 ~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~IAraL~~~P~~ 162 (178)
.-+++.....+.++++-+.+|. +..++..+.||||..|+...+++|+..|+-
T Consensus 43 ~l~~s~~~~s~~i~~le~~lg~-~L~~R~~~~lsg~~~~lt~~g~~l~~~~~~ 94 (265)
T 1b9m_A 43 DAGISYKSAWDAINEMNQLSEH-ILVERATGGKGGGGAVLTRYGQRLIQLYDL 94 (265)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTS-CCEEECCCC-----EEECHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHhCC-CeEEecCCCCCCCceEECHHHHHHHHHHHH
Confidence 3355545556678888888999 788999999999999999999999987754
No 223
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=85.08 E-value=0.12 Score=42.74 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=25.3
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPII 47 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~ 47 (178)
.+++.+++.++.|+.. ...|+|++|+|||++.
T Consensus 10 ~il~~l~~~i~~g~~~--~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRV--CVILVGSPGSGKSTIA 41 (359)
T ss_dssp HHHHHHHHTTTTCSCE--EEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHhccCCee--EEEEECCCCCcHHHHH
Confidence 4788999999999821 1678999999999444
No 224
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=83.30 E-value=0.16 Score=37.00 Aligned_cols=34 Identities=9% Similarity=0.020 Sum_probs=17.4
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++++|+..+..+ .+++|.+|+||| ||+..+.+
T Consensus 12 ~~l~~~~~~~~~~k-----i~~vG~~~vGKS-------sli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHGK-----LLFLGLDNAGKT-------TLLHMLKN 45 (190)
T ss_dssp ------------CE-----EEEEESTTSSHH-------HHHHHHHH
T ss_pred HHHHHhhccCCccE-----EEEECCCCCCHH-------HHHHHHhc
Confidence 46889998877664 579999999999 77666654
No 225
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=83.03 E-value=0.3 Score=36.04 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=17.0
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..+|.|++||||| |+.+.+.+
T Consensus 4 ~i~l~G~~GsGKS-------T~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKT-------TIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHH-------HHHHHHHT
T ss_pred EEEEECCCCCCHH-------HHHHHHHH
Confidence 4579999999999 77776665
No 226
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=82.53 E-value=0.0039 Score=51.74 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=28.9
Q ss_pred CCChHHHHHHHHHHHHhCCCCe--EEeeCCCCCCCC
Q psy860 141 RYSGGNKRKLSTAMALIGDRDD--GFQKLPFSSQNL 174 (178)
Q Consensus 141 ~LSgGqkQRv~IAraL~~~P~~--lllDEPt~gLD~ 174 (178)
.+|+| ||++|++++..+|++ +|+||+|+.||.
T Consensus 283 ~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~ 316 (372)
T 2ewv_A 283 PKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYS 316 (372)
T ss_dssp ECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHH
T ss_pred ecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHH
Confidence 45888 899999999999999 999999998884
No 227
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=81.70 E-value=0.28 Score=36.14 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=16.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
+..|.|++||||| |+.+.+.+
T Consensus 20 ~I~l~G~~GsGKS-------Tla~~L~~ 40 (202)
T 3t61_A 20 SIVVMGVSGSGKS-------SVGEAIAE 40 (202)
T ss_dssp CEEEECSTTSCHH-------HHHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHH
Confidence 5779999999999 66665543
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=81.28 E-value=0.24 Score=36.77 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=16.0
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
+..|.|++||||| |+.+.+..
T Consensus 14 ~i~l~G~sGsGKs-------Tl~~~L~~ 34 (204)
T 2qor_A 14 PLVVCGPSGVGKG-------TLIKKVLS 34 (204)
T ss_dssp CEEEECCTTSCHH-------HHHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHH
Confidence 5679999999999 55555543
No 229
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=80.79 E-value=0.33 Score=35.71 Aligned_cols=21 Identities=14% Similarity=0.009 Sum_probs=16.1
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..+|.|++||||| |+.+.+.+
T Consensus 3 ~i~i~G~~GsGKS-------Tl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKS-------TVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHH-------HHHHHHHH
T ss_pred EEEEECCCCcCHH-------HHHHHHHH
Confidence 3578999999999 66666554
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.30 E-value=0.27 Score=38.54 Aligned_cols=50 Identities=10% Similarity=-0.006 Sum_probs=34.2
Q ss_pred cCccccccchhhhccHHHHH-------HHhhhhhCCCCCCccchHHHHHHHhhhhhccCCcccc
Q psy860 10 IGYCPQFNGINEHLTAQEML-------ECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAA 66 (178)
Q Consensus 10 ~~~~~~~~~v~~~~~~g~~~-------~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g 66 (178)
+|-..+++.+...+..+... .....+.|++|+||+ ++.+.+.....++.+
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt-------~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKT-------ELAKTLAATLFDTEE 76 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHH-------HHHHHHHHHHHSCGG
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHH-------HHHHHHHHHHcCCCc
Confidence 36677888888888876421 003568899999999 777766665444433
No 231
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=80.00 E-value=0.24 Score=40.59 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=18.4
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCC
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSP 62 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~ 62 (178)
.+++|++|+||| ||+..+.+...
T Consensus 40 I~vvG~~g~GKS-------TLln~L~~~~~ 62 (361)
T 2qag_A 40 LMVVGESGLGKS-------TLINSLFLTDL 62 (361)
T ss_dssp EEECCCTTSCHH-------HHHHHHTTCCC
T ss_pred EEEEcCCCCCHH-------HHHHHHhCCCC
Confidence 469999999999 88888766533
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.14 E-value=0.31 Score=35.56 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=17.9
Q ss_pred chhhhccHHHHHHHhhhhhCCCCCCccchHH
Q psy860 18 GINEHLTAQEMLECFSALRGIPGVKSGPIID 48 (178)
Q Consensus 18 ~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~ 48 (178)
++|+....+. ...|.|++|||||++..
T Consensus 2 ~~~~~~~~~~----~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 2 PGSMEQPKGI----NILITGTPGTGKTSMAE 28 (184)
T ss_dssp ----CCCSSC----EEEEECSTTSSHHHHHH
T ss_pred CcCcCCCCCC----EEEEECCCCCCHHHHHH
Confidence 4566666666 56799999999995553
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=78.84 E-value=0.52 Score=33.27 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|++|+||| ||+..+.+.
T Consensus 6 v~lvG~~gvGKS-------tL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKS-------TIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHH-------HHHHHHHCC
T ss_pred EEEECCCCCCHH-------HHHHHHhCC
Confidence 578999999999 888887764
No 234
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=77.50 E-value=0.34 Score=38.56 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.3
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
+.+|+|++|+||| ||+..+.+.
T Consensus 10 ~VaIvG~~nvGKS-------TLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKS-------TLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHH-------HHHHHHHTC
T ss_pred EEEEECCCCCCHH-------HHHHHHHCC
Confidence 6889999999999 888888765
No 235
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=76.75 E-value=0.33 Score=35.28 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=20.7
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCccccc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQ 67 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~ 67 (178)
+..+.|++|+||| |+.+.+...+.+..+.
T Consensus 15 ~i~l~G~~GsGKs-------T~~~~L~~~l~~~~~~ 43 (186)
T 2yvu_A 15 VVWLTGLPGSGKT-------TIATRLADLLQKEGYR 43 (186)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHH-------HHHHHHHHHHHhcCCe
Confidence 6779999999999 7767666554444443
No 236
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=76.03 E-value=0.77 Score=34.13 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=12.3
Q ss_pred hhhhCCCCCCccchHH
Q psy860 33 SALRGIPGVKSGPIID 48 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~ 48 (178)
..|.||+|+||+++..
T Consensus 4 IVi~GPSG~GK~Tl~~ 19 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLK 19 (186)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 3578999999994443
No 237
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=75.89 E-value=0.73 Score=33.13 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=17.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|++|+||| ||+..+.+.
T Consensus 5 v~ivG~~gvGKS-------tLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKT-------TLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHH-------HHHHHHTCC
T ss_pred EEEECCCCCCHH-------HHHHHHhcC
Confidence 568999999999 888887764
No 238
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=75.82 E-value=0.33 Score=39.78 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=20.7
Q ss_pred ccchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860 16 FNGINEHLTAQEMLECFSALRGIPGVKSGPII 47 (178)
Q Consensus 16 ~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~ 47 (178)
+++..+++.+| +..|.|+||+|||+++
T Consensus 16 ~~~~~i~f~~g-----l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 16 HVNSRIKFEKG-----IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECCSE-----EEEEEECTTSSHHHHH
T ss_pred ccceEEecCCC-----eEEEECCCCCCHHHHH
Confidence 35566677665 7889999999999554
No 239
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=75.28 E-value=0.44 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=12.6
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+.+|.|++|||||++.
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4578999999999433
No 240
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=74.82 E-value=0.78 Score=32.73 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.1
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|++|+||| ||+..+.+
T Consensus 10 i~lvG~~gvGKS-------tL~~~l~~ 29 (188)
T 2wjg_A 10 IALIGNPNVGKS-------TIFNALTG 29 (188)
T ss_dssp EEEECSTTSSHH-------HHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 568999999999 88887776
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=74.32 E-value=0.49 Score=33.25 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=12.7
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|++|||||++.
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4568999999999444
No 242
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=74.09 E-value=0.66 Score=32.72 Aligned_cols=16 Identities=13% Similarity=0.100 Sum_probs=12.7
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|++|||||++.
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4568999999999444
No 243
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=72.86 E-value=1.1 Score=34.42 Aligned_cols=34 Identities=9% Similarity=-0.100 Sum_probs=21.9
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccccccc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSLLMTN 74 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~~g~~ 74 (178)
...+.|++||||| |+.+.+..... .+.+.+++..
T Consensus 34 ~i~l~G~~GsGKS-------Tla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 34 AILLGGQSGAGKT-------TIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp EEEEESCGGGTTH-------HHHHHHHHHTT--TCCEEECGGG
T ss_pred EEEEECCCCCCHH-------HHHHHHHHhcC--CCcEEEecHH
Confidence 5678999999999 66666655432 1234445443
No 244
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=72.83 E-value=1 Score=33.98 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=19.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
.+++|.+|+||| ||+..+.+-..+
T Consensus 32 i~lvG~~g~GKS-------tlin~l~g~~~~ 55 (239)
T 3lxx_A 32 IVLVGKTGAGKS-------ATGNSILGRKVF 55 (239)
T ss_dssp EEEECCTTSSHH-------HHHHHHHTSCCS
T ss_pred EEEECCCCCCHH-------HHHHHHcCCCcC
Confidence 579999999999 888877775443
No 245
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=71.35 E-value=0.66 Score=33.58 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.2
Q ss_pred hhhhhCCCCCCccchHHH
Q psy860 32 FSALRGIPGVKSGPIIDY 49 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~ 49 (178)
+.++.|+.|||||++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999966643
No 246
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=70.96 E-value=2.9 Score=32.36 Aligned_cols=32 Identities=16% Similarity=-0.164 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHHhCCCCeEEeeCCCCCCCC
Q psy860 143 SGGNKRKLSTAMALIGDRDDGFQKLPFSSQNL 174 (178)
Q Consensus 143 SgGqkQRv~IAraL~~~P~~lllDEPt~gLD~ 174 (178)
+++++.+..++.+...+|.+|++||+.+-++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 35677888888888899999999999876654
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=70.55 E-value=0.69 Score=33.92 Aligned_cols=22 Identities=23% Similarity=0.212 Sum_probs=17.2
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
..++.|++|+||| |++..+++.
T Consensus 8 ~i~i~G~sGsGKT-------Tl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKT-------TLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHH-------HHHHHHHHH
T ss_pred EEEEEeCCCCCHH-------HHHHHHHHh
Confidence 4678999999999 676666654
No 248
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=69.82 E-value=1.3 Score=36.98 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=23.3
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc-----------CCcccccccccc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF-----------SPFQAAQNSLLM 72 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~-----------~~~~~g~i~~~g 72 (178)
..+|+|.+|+||| ||+..+.+. ..|+.|.+.+.+
T Consensus 24 kvgIVG~pnvGKS-------TL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 24 KIGIVGLPNVGKS-------TFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CEEEECCSSSSHH-------HHHHHHHC-------------CCSEEEEECCC
T ss_pred EEEEECCCCCCHH-------HHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4679999999999 777777665 345566655443
No 249
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=69.06 E-value=1.1 Score=31.93 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.9
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
-.+++|.+|+||| ||+..+.+.
T Consensus 6 ki~ivG~~g~GKS-------tLl~~l~~~ 27 (172)
T 2gj8_A 6 KVVIAGRPNAGKS-------SLLNALAGR 27 (172)
T ss_dssp EEEEEESTTSSHH-------HHHHHHHTS
T ss_pred EEEEECCCCCCHH-------HHHHHHhCC
Confidence 3578999999999 777777764
No 250
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=69.05 E-value=1 Score=36.89 Aligned_cols=32 Identities=9% Similarity=-0.030 Sum_probs=22.3
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCcccccccc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPFQAAQNSL 70 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~~~g~i~~ 70 (178)
-..|+|++|+||| |+++.++.......+.+.+
T Consensus 37 ~~~i~G~~G~GKs-------~~~~~~~~~~~~~~~~~~~ 68 (392)
T 4ag6_A 37 NWTILAKPGAGKS-------FTAKMLLLREYMQGSRVII 68 (392)
T ss_dssp CEEEECCTTSSHH-------HHHHHHHHHHHTTTCCEEE
T ss_pred ceEEEcCCCCCHH-------HHHHHHHHHHHHCCCEEEE
Confidence 4569999999999 7777666554444555544
No 251
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=68.33 E-value=1.1 Score=32.23 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=13.1
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..+.|++|||||++.
T Consensus 6 ~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQA 21 (186)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999444
No 252
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=67.54 E-value=0.55 Score=36.25 Aligned_cols=30 Identities=10% Similarity=0.068 Sum_probs=19.9
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhh---ccCCcccccc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAI---RFSPFQAAQN 68 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~---~~~~~~~g~i 68 (178)
..+|.|++||||| |+.+.+. ++.-.+.|.+
T Consensus 11 ~i~i~G~~GsGKs-------Tla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKS-------SVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHHHhCCCcccCCcH
Confidence 5789999999999 5555544 4433444444
No 253
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=67.21 E-value=1.2 Score=31.63 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=12.3
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..+.|++|||||++.
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3568899999999333
No 254
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=66.82 E-value=0.94 Score=34.26 Aligned_cols=16 Identities=13% Similarity=0.127 Sum_probs=13.0
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
..+|.|++|+|||++.
T Consensus 18 ~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVA 33 (236)
T ss_dssp EEEEECSSCSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4679999999999444
No 255
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=66.79 E-value=1.2 Score=31.91 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.0
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|++|||||++.
T Consensus 5 ~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSS 20 (192)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999444
No 256
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=66.49 E-value=1.7 Score=30.85 Aligned_cols=21 Identities=10% Similarity=0.101 Sum_probs=15.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
...|.|++|+||| |+.+.+..
T Consensus 5 ~i~l~G~~GsGKS-------T~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAGKS-------GIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHH
Confidence 3568899999999 55555543
No 257
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=66.11 E-value=1.1 Score=40.70 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=20.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
...|.|++|+||| |+++.+.+....
T Consensus 240 ~vLL~Gp~GtGKT-------tLarala~~l~~ 264 (806)
T 1ypw_A 240 GILLYGPPGTGKT-------LIARAVANETGA 264 (806)
T ss_dssp EEEECSCTTSSHH-------HHHHHHHHTTTC
T ss_pred eEEEECcCCCCHH-------HHHHHHHHHcCC
Confidence 4678999999999 888888876543
No 258
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=65.75 E-value=0.52 Score=39.76 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=20.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCcc
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSG 44 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~ 44 (178)
+.|+.+.--+..|+ +..|.|++|+|||
T Consensus 185 ~~LD~~lgGl~~G~----liiIaG~pG~GKT 211 (444)
T 3bgw_A 185 TELDRMTYGYKRRN----FVLIAARPSMGKT 211 (444)
T ss_dssp HHHHHHHSSBCSSC----EEEEEECSSSSHH
T ss_pred HHHHhhcCCCCCCc----EEEEEeCCCCChH
Confidence 34555554578888 7779999999999
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=64.92 E-value=1.6 Score=33.61 Aligned_cols=19 Identities=11% Similarity=-0.015 Sum_probs=14.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
..|.|++|+||| |+.+.+.
T Consensus 4 i~I~G~~GSGKS-------Tla~~La 22 (253)
T 2ze6_A 4 HLIYGPTCSGKT-------DMAIQIA 22 (253)
T ss_dssp EEEECCTTSSHH-------HHHHHHH
T ss_pred EEEECCCCcCHH-------HHHHHHH
Confidence 468899999999 6655554
No 260
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=64.58 E-value=1.3 Score=32.79 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=15.9
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
+.+|.|++||||| |+.+.+..
T Consensus 6 ~I~i~G~~GSGKS-------T~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKS-------TVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHH-------HHHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHH
Confidence 5679999999999 55555543
No 261
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=64.36 E-value=0.38 Score=35.48 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=12.5
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+.+|.|++|||||+..
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4568899999999333
No 262
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=64.25 E-value=1.9 Score=30.74 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.7
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
...|.|++|||||++.
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4668999999999443
No 263
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=63.51 E-value=24 Score=29.65 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=16.2
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
...+.|++|+||| |++..+...
T Consensus 102 vIlivG~~G~GKT-------Tt~~kLA~~ 123 (443)
T 3dm5_A 102 ILLMVGIQGSGKT-------TTVAKLARY 123 (443)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHH
T ss_pred EEEEECcCCCCHH-------HHHHHHHHH
Confidence 4668899999999 666655543
No 264
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=63.49 E-value=1.3 Score=31.73 Aligned_cols=17 Identities=29% Similarity=0.696 Sum_probs=13.2
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
+..|.|++|+|||++..
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45688999999995543
No 265
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=62.95 E-value=2.4 Score=33.35 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=15.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
...|.|++||||| |+.+.+.
T Consensus 35 livl~G~sGsGKS-------Tla~~L~ 54 (287)
T 1gvn_B 35 AFLLGGQPGSGKT-------SLRSAIF 54 (287)
T ss_dssp EEEEECCTTSCTH-------HHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHH
Confidence 5668999999999 5555554
No 266
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=62.85 E-value=1.2 Score=31.91 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.3
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
+..|.|+.|||||++..
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45688999999995553
No 267
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=62.48 E-value=2.1 Score=32.55 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=16.3
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
..|.|++|+||| |+.+.+.+.
T Consensus 48 vll~G~~GtGKT-------~la~~la~~ 68 (257)
T 1lv7_A 48 VLMVGPPGTGKT-------LLAKAIAGE 68 (257)
T ss_dssp EEEECCTTSCHH-------HHHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHHH
Confidence 358899999999 777766554
No 268
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=61.28 E-value=1.5 Score=31.47 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=12.9
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..+.|++|||||++.
T Consensus 7 ~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5668999999999444
No 269
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=61.01 E-value=1.7 Score=31.44 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=15.6
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..+|.|++||||| |+.+.+..
T Consensus 10 ~I~i~G~~GsGKS-------T~~~~La~ 30 (203)
T 1uf9_A 10 IIGITGNIGSGKS-------TVAALLRS 30 (203)
T ss_dssp EEEEEECTTSCHH-------HHHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHH
Confidence 4678999999999 55555543
No 270
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=60.97 E-value=1.4 Score=33.07 Aligned_cols=16 Identities=19% Similarity=0.034 Sum_probs=12.8
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..+.|++|||||++.
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4568899999999555
No 271
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=60.21 E-value=2.6 Score=30.08 Aligned_cols=16 Identities=19% Similarity=0.108 Sum_probs=12.6
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
...+.|++|||||++.
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999444
No 272
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.15 E-value=1.9 Score=32.53 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=20.5
Q ss_pred cccccchhhhccHHHHHHHhhhhhCCCCCCccc
Q psy860 13 CPQFNGINEHLTAQEMLECFSALRGIPGVKSGP 45 (178)
Q Consensus 13 ~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~ 45 (178)
.++-+.+--.+..|+ ...+.|++|+|||+
T Consensus 63 ~~~q~~~i~~i~~g~----~~~i~g~TGsGKTt 91 (235)
T 3llm_A 63 KKFESEILEAISQNS----VVIIRGATGCGKTT 91 (235)
T ss_dssp GGGHHHHHHHHHHCS----EEEEECCTTSSHHH
T ss_pred HHHHHHHHHHHhcCC----EEEEEeCCCCCcHH
Confidence 344445555566777 67799999999993
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=59.98 E-value=1.9 Score=31.28 Aligned_cols=16 Identities=6% Similarity=0.092 Sum_probs=13.0
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|+.|||||++.
T Consensus 6 ~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQC 21 (204)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5678999999999444
No 274
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=59.73 E-value=1.5 Score=32.28 Aligned_cols=15 Identities=33% Similarity=0.607 Sum_probs=12.1
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|.|+.|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQA 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999555
No 275
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=59.69 E-value=1.9 Score=31.30 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=13.0
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|++|||||++.
T Consensus 6 ~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQA 21 (213)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5678999999999444
No 276
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=59.49 E-value=2 Score=33.11 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=17.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccC
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFS 61 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~ 61 (178)
.+++|++|+||| ||+..+.+..
T Consensus 6 i~lvG~~g~GKT-------TL~n~l~g~~ 27 (271)
T 3k53_A 6 VALVGNPNVGKT-------TIFNALTGLR 27 (271)
T ss_dssp EEEEECSSSSHH-------HHHHHHHTTC
T ss_pred EEEECCCCCCHH-------HHHHHHhCCC
Confidence 468999999999 8888777653
No 277
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=59.33 E-value=1.6 Score=32.81 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.1
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..++||.|||||+..
T Consensus 3 Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999555
No 278
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=58.75 E-value=2.1 Score=30.64 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=13.1
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|++|||||++.
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999554
No 279
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.46 E-value=1.7 Score=32.14 Aligned_cols=15 Identities=33% Similarity=0.519 Sum_probs=12.0
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|.|+.|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999444
No 280
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=58.26 E-value=2.2 Score=33.86 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=18.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
|.+++|..|+||| ||+..+.+-
T Consensus 12 ~v~ivG~~nvGKS-------TLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKS-------TLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHH-------HHHHHHHTS
T ss_pred EEEEECCCCCcHH-------HHHHHHhCC
Confidence 6889999999999 777777653
No 281
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=57.72 E-value=3.1 Score=29.66 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=12.7
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|++|+|||++.
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4568999999999444
No 282
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=57.44 E-value=1.7 Score=30.49 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=12.3
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|.|+.|||||++.
T Consensus 3 I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEESCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468899999999555
No 283
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=57.34 E-value=2.6 Score=30.03 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=17.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|+.|+||| ||+..+.+-
T Consensus 51 i~vvG~~g~GKS-------sll~~l~~~ 71 (193)
T 2ged_A 51 IIIAGPQNSGKT-------SLLTLLTTD 71 (193)
T ss_dssp EEEECCTTSSHH-------HHHHHHHHS
T ss_pred EEEECCCCCCHH-------HHHHHHhcC
Confidence 579999999999 777766654
No 284
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=56.88 E-value=2.9 Score=29.03 Aligned_cols=21 Identities=29% Similarity=0.215 Sum_probs=16.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 7 i~i~G~~~vGKS-------sl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKT-------SLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHH-------HHHHHHHCC
T ss_pred EEEECCCCccHH-------HHHHHHhcC
Confidence 468999999999 777766553
No 285
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=56.51 E-value=1.6 Score=32.40 Aligned_cols=17 Identities=18% Similarity=0.313 Sum_probs=13.5
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
+..|.|++|||||++..
T Consensus 7 ~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 7 KVMISGAPASGKGTQCE 23 (222)
T ss_dssp CEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46688999999995553
No 286
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=56.24 E-value=4.2 Score=32.00 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=11.5
Q ss_pred hhhhhCCCCCCccchHHH
Q psy860 32 FSALRGIPGVKSGPIIDY 49 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~ 49 (178)
..+|.|++|||||++...
T Consensus 7 iIgItG~sGSGKSTva~~ 24 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHT 24 (290)
T ss_dssp EEEEESCC---CCTHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999966644
No 287
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=56.21 E-value=2.1 Score=30.81 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=13.8
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
+..|.|++|||||++..
T Consensus 11 ~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57799999999995553
No 288
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=55.58 E-value=2.6 Score=29.65 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=13.0
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|+.|||||++.
T Consensus 4 ~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVG 19 (173)
T ss_dssp CEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4568899999999555
No 289
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=55.38 E-value=3 Score=28.66 Aligned_cols=20 Identities=10% Similarity=0.140 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 8 i~v~G~~~~GKs-------sl~~~l~~ 27 (168)
T 1z2a_A 8 MVVVGNGAVGKS-------SMIQRYCK 27 (168)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHc
Confidence 468899999999 77776654
No 290
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=55.38 E-value=1.7 Score=32.48 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=13.1
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|++|||||++.
T Consensus 9 ~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVS 24 (227)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999444
No 291
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=54.79 E-value=3.3 Score=28.52 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.4
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 6 i~v~G~~~~GKs-------sli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKS-------SLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHH-------HHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 458899999999 77777765
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=54.55 E-value=2.1 Score=31.24 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=13.2
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|+.|+|||++.
T Consensus 22 ~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQA 37 (201)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999554
No 293
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=54.48 E-value=3.4 Score=28.53 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=16.1
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 5 i~ivG~~~~GKS-------sli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKS-------TLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHH-------HHHHHHHC
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 358899999999 77777654
No 294
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=54.41 E-value=3.2 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|+.|+||| ||+..+.+
T Consensus 6 i~v~G~~~~GKS-------sli~~l~~ 25 (167)
T 1kao_A 6 VVVLGSGGVGKS-------ALTVQFVT 25 (167)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 468999999999 77666553
No 295
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=54.24 E-value=3.2 Score=28.36 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 4 i~v~G~~~~GKS-------sli~~l~~ 23 (161)
T 2dyk_A 4 VVIVGRPNVGKS-------SLFNRLLK 23 (161)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 357899999999 77776654
No 296
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=54.23 E-value=2.3 Score=30.60 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.6
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|+.|||||++.
T Consensus 14 ~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQC 29 (199)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6789999999999554
No 297
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=54.06 E-value=2.8 Score=28.91 Aligned_cols=21 Identities=29% Similarity=0.230 Sum_probs=16.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 5 i~~vG~~~~GKS-------sli~~l~~~ 25 (166)
T 3q72_A 5 VLLLGAPGVGKS-------ALARIFGGV 25 (166)
T ss_dssp EEEEESTTSSHH-------HHHHHHCCC
T ss_pred EEEECCCCCCHH-------HHHHHHcCc
Confidence 358899999999 777776653
No 298
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=53.97 E-value=2.8 Score=29.87 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=17.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|.+|+||| ||+..+.+-
T Consensus 19 i~ivG~~~vGKS-------sL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKT-------TLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHH-------HHHHHHCCS
T ss_pred EEEECCCCCCHH-------HHHHHHhcC
Confidence 568999999999 777776654
No 299
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=53.95 E-value=2.2 Score=31.68 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.4
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
+..+.|+.|||||++..
T Consensus 6 ~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46688999999995553
No 300
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=53.94 E-value=2.1 Score=31.23 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=16.5
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
...+.|++|+||| |++..+++.
T Consensus 6 ~i~i~G~sGsGKT-------Tl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKT-------TLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHH-------HHHHHHHHH
T ss_pred EEEEECCCCCCHH-------HHHHHHHHh
Confidence 3568899999999 666665554
No 301
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=53.64 E-value=3.3 Score=28.29 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 7 i~v~G~~~~GKs-------sl~~~l~~ 26 (168)
T 1u8z_A 7 VIMVGSGGVGKS-------ALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 458899999999 77776654
No 302
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=53.58 E-value=3.3 Score=28.50 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=16.4
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 9 i~v~G~~~~GKS-------sli~~l~~~ 29 (170)
T 1z0j_A 9 VCLLGDTGVGKS-------SIMWRFVED 29 (170)
T ss_dssp EEEECCTTSSHH-------HHHHHHHHS
T ss_pred EEEECcCCCCHH-------HHHHHHHcC
Confidence 458899999999 777766543
No 303
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=53.14 E-value=4 Score=28.89 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=8.9
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|++|||||++.
T Consensus 7 ~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 7 IIWINGPFGVGKTHTA 22 (183)
T ss_dssp EEEEECCC----CHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999444
No 304
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=53.12 E-value=3.4 Score=28.81 Aligned_cols=21 Identities=24% Similarity=0.115 Sum_probs=16.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 12 i~v~G~~~~GKs-------sl~~~l~~~ 32 (181)
T 3tw8_B 12 LLIIGDSGVGKS-------SLLLRFADN 32 (181)
T ss_dssp EEEECCTTSCHH-------HHHHHHCSC
T ss_pred EEEECCCCCCHH-------HHHHHHhcC
Confidence 468999999999 777776643
No 305
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=52.97 E-value=3 Score=33.05 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=17.9
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
+.+|+|.+|+||| ||+..+.+-
T Consensus 9 ~V~ivG~~nvGKS-------TLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKS-------TLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHH-------HHHHHHHTS
T ss_pred EEEEECCCCCCHH-------HHHHHHhCC
Confidence 4789999999999 777776653
No 306
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=52.95 E-value=3 Score=30.34 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=13.2
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..|.|+.|||||++.
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999554
No 307
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=52.82 E-value=3.5 Score=28.27 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 6 i~v~G~~~~GKs-------sli~~l~~ 25 (167)
T 1c1y_A 6 LVVLGSGGVGKS-------ALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 468899999999 77776654
No 308
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=52.64 E-value=3.4 Score=31.54 Aligned_cols=22 Identities=18% Similarity=0.022 Sum_probs=17.3
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
-.+|+|.+|+||| ||+..+.+-
T Consensus 23 ~I~lvG~~g~GKS-------Slin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKS-------ATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHH-------HHHHHHHTS
T ss_pred EEEEECCCCCcHH-------HHHHHHhCC
Confidence 3679999999999 777666654
No 309
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=52.60 E-value=3.5 Score=28.73 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 11 i~v~G~~~~GKS-------sli~~l~~ 30 (182)
T 1ky3_A 11 VIILGDSGVGKT-------SLMHRYVN 30 (182)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 468999999999 77766554
No 310
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=52.56 E-value=3.6 Score=28.27 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=15.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 6 i~v~G~~~~GKs-------sli~~l~~ 25 (170)
T 1ek0_A 6 LVLLGEAAVGKS-------SIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 458899999999 77666553
No 311
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=52.43 E-value=3.7 Score=32.00 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=17.3
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|.+|+||| ||+..+.+.
T Consensus 6 I~lvG~~nvGKS-------TL~n~L~g~ 26 (272)
T 3b1v_A 6 IALIGNPNSGKT-------SLFNLITGH 26 (272)
T ss_dssp EEEECCTTSSHH-------HHHHHHHCC
T ss_pred EEEECCCCCCHH-------HHHHHHHCC
Confidence 578999999999 777777764
No 312
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=52.27 E-value=1.9 Score=30.82 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=13.2
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
...|.|+.|||||++..
T Consensus 4 ~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp SEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35688999999995553
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=52.21 E-value=3.1 Score=28.34 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 6 i~v~G~~~~GKs-------sl~~~l~~ 25 (166)
T 2ce2_X 6 LVVVGAGGVGKS-------ALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 468899999999 77666654
No 314
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=52.09 E-value=2.7 Score=30.66 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=13.9
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
+..|.|+.|||||++..
T Consensus 12 ~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 67799999999995553
No 315
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=52.03 E-value=3.6 Score=28.37 Aligned_cols=20 Identities=20% Similarity=0.024 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 9 i~v~G~~~~GKs-------sli~~l~~ 28 (170)
T 1z08_A 9 VVLLGEGCVGKT-------SLVLRYCE 28 (170)
T ss_dssp EEEECCTTSCHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHc
Confidence 468899999999 77766653
No 316
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=51.99 E-value=3.6 Score=28.62 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 10 i~v~G~~~~GKS-------sli~~l~~ 29 (177)
T 1wms_A 10 VILLGDGGVGKS-------SLMNRYVT 29 (177)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 468999999999 77766653
No 317
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=51.96 E-value=3.7 Score=29.74 Aligned_cols=16 Identities=6% Similarity=0.192 Sum_probs=12.7
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
..+|.|++|||||++.
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999555
No 318
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=51.88 E-value=3.9 Score=28.50 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 11 i~v~G~~~~GKs-------sl~~~l~~ 30 (178)
T 2lkc_A 11 VTIMGHVDHGKT-------TLLDAIRH 30 (178)
T ss_dssp EEEESCTTTTHH-------HHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 568999999999 77776654
No 319
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=51.87 E-value=2.7 Score=29.94 Aligned_cols=17 Identities=24% Similarity=0.278 Sum_probs=13.6
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
+..|.|+.|||||++..
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 56789999999995553
No 320
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=51.12 E-value=3.4 Score=29.43 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 26 i~v~G~~~~GKS-------sli~~l~~ 45 (195)
T 1svi_A 26 IALAGRSNVGKS-------SFINSLIN 45 (195)
T ss_dssp EEEEEBTTSSHH-------HHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 579999999999 77776664
No 321
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=51.06 E-value=2.6 Score=31.22 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.1
Q ss_pred HhhhhhCCCCCCccchH
Q psy860 31 CFSALRGIPGVKSGPII 47 (178)
Q Consensus 31 ~~~~i~G~~g~gk~~~~ 47 (178)
||.++=|+.||||||..
T Consensus 1 mfI~~EG~DGsGKsTq~ 17 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQI 17 (197)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35677899999999444
No 322
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.97 E-value=4.4 Score=30.66 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.3
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|+|+.||||||..
T Consensus 32 I~llGpPGsGKgTqa 46 (217)
T 3umf_A 32 IFVLGGPGSGKGTQC 46 (217)
T ss_dssp EEEECCTTCCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999555
No 323
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=50.85 E-value=4.6 Score=28.23 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=14.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..|.|+.|+||| ++++.+..
T Consensus 46 ~ll~G~~G~GKT-------~l~~~~~~ 65 (195)
T 1jbk_A 46 PVLIGEPGVGKT-------AIVEGLAQ 65 (195)
T ss_dssp EEEECCTTSCHH-------HHHHHHHH
T ss_pred eEEECCCCCCHH-------HHHHHHHH
Confidence 457899999999 55555443
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=50.78 E-value=3.4 Score=28.46 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=15.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 6 i~v~G~~~~GKs-------sli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKS-------CLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHh
Confidence 458899999999 77666654
No 325
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=50.77 E-value=4 Score=28.03 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 9 i~v~G~~~~GKs-------sli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKS-------SLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 458899999999 77766654
No 326
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=50.56 E-value=4.4 Score=29.71 Aligned_cols=15 Identities=20% Similarity=0.043 Sum_probs=11.7
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|.|++|+|||++.
T Consensus 55 ~ll~G~~G~GKT~la 69 (242)
T 3bos_A 55 IYLWGPVKSGRTHLI 69 (242)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999433
No 327
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=50.51 E-value=3.5 Score=29.09 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=16.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 4 i~v~G~~~~GKS-------sli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKS-------TLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHH-------HHHHHHHSC
T ss_pred EEEECCCCCCHH-------HHHHHHhCc
Confidence 358899999999 777776654
No 328
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=50.44 E-value=2.9 Score=30.45 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=13.9
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
+..|.|+.|||||++..
T Consensus 11 ~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57799999999995553
No 329
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=50.34 E-value=4.4 Score=28.21 Aligned_cols=20 Identities=10% Similarity=-0.046 Sum_probs=15.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 9 i~v~G~~~~GKs-------sl~~~l~~ 28 (178)
T 2hxs_A 9 IVVLGDGASGKT-------SLTTCFAQ 28 (178)
T ss_dssp EEEECCTTSSHH-------HHHHHHHG
T ss_pred EEEECcCCCCHH-------HHHHHHHh
Confidence 468899999999 66666553
No 330
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=50.30 E-value=3.2 Score=32.78 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=25.0
Q ss_pred ccCccccccchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPII 47 (178)
Q Consensus 9 ~~~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~ 47 (178)
=+|...+++.+...+..|... -..+.|++|+|||++.
T Consensus 39 i~g~~~~~~~l~~~l~~~~~~--~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 39 VTAQDHAVTVLKKTLKSANLP--HMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCSCCTTHHHHHHHTTCTTCC--CEEEECSTTSSHHHHH
T ss_pred hhCCHHHHHHHHHHHhcCCCC--EEEEECCCCCCHHHHH
Confidence 345566777777777776411 1457899999999333
No 331
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=50.21 E-value=3.6 Score=29.13 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=17.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 26 i~v~G~~~~GKS-------sli~~l~~~ 46 (195)
T 3pqc_A 26 VAFVGRSNVGKS-------SLLNALFNR 46 (195)
T ss_dssp EEEEEBTTSSHH-------HHHHHHHTS
T ss_pred EEEECCCCCCHH-------HHHHHHHcC
Confidence 568999999999 777776654
No 332
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=50.07 E-value=4.6 Score=29.24 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
..|.|++|+||| ++++.+...
T Consensus 57 ~~l~G~~GtGKT-------~la~~i~~~ 77 (202)
T 2w58_A 57 LYLHGSFGVGKT-------YLLAAIANE 77 (202)
T ss_dssp EEEECSTTSSHH-------HHHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHHH
Confidence 447899999999 777666543
No 333
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=49.99 E-value=4.1 Score=28.82 Aligned_cols=21 Identities=14% Similarity=0.126 Sum_probs=16.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 10 i~v~G~~~~GKS-------sli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKS-------SIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHH-------HHHHHHHHS
T ss_pred EEEECCCCCCHH-------HHHHHHHhC
Confidence 568999999999 777766654
No 334
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=49.96 E-value=2.4 Score=31.35 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=12.6
Q ss_pred hhhhCCCCCCccchHH
Q psy860 33 SALRGIPGVKSGPIID 48 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~ 48 (178)
..|.|+.|||||++..
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4578999999995553
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=49.84 E-value=3.5 Score=28.69 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=16.3
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 12 i~v~G~~~~GKs-------sli~~l~~~ 32 (181)
T 2fn4_A 12 LVVVGGGGVGKS-------ALTIQFIQS 32 (181)
T ss_dssp EEEEECTTSSHH-------HHHHHHHHS
T ss_pred EEEECCCCCCHH-------HHHHHHHhC
Confidence 468899999999 777666543
No 336
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=49.77 E-value=4.2 Score=27.88 Aligned_cols=19 Identities=11% Similarity=0.083 Sum_probs=14.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| +|+..+.
T Consensus 3 i~~~G~~~~GKs-------sl~~~l~ 21 (164)
T 1r8s_A 3 ILMVGLDAAGKT-------TILYKLK 21 (164)
T ss_dssp EEEECSTTSSHH-------HHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHH
Confidence 358899999999 6666554
No 337
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=49.68 E-value=4.2 Score=28.59 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 7 i~v~G~~~~GKS-------sli~~l~~ 26 (189)
T 4dsu_A 7 LVVVGADGVGKS-------ALTIQLIQ 26 (189)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 468999999999 77766654
No 338
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=49.60 E-value=4.3 Score=28.93 Aligned_cols=20 Identities=35% Similarity=0.420 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 28 i~v~G~~~~GKS-------sLi~~l~~ 47 (193)
T 2oil_A 28 VVLIGESGVGKT-------NLLSRFTR 47 (193)
T ss_dssp EEEESSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHhc
Confidence 468999999999 77776654
No 339
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=49.37 E-value=3.1 Score=29.27 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|++|+||| ||+..+.
T Consensus 21 i~v~G~~~~GKs-------sli~~l~ 39 (183)
T 1moz_A 21 ILILGLDGAGKT-------TILYRLQ 39 (183)
T ss_dssp EEEEEETTSSHH-------HHHHHTC
T ss_pred EEEECCCCCCHH-------HHHHHHh
Confidence 568999999999 7777665
No 340
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=48.64 E-value=4.5 Score=28.46 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 14 i~v~G~~~~GKS-------sli~~l~~ 33 (195)
T 3bc1_A 14 FLALGDSGVGKT-------SVLYQYTD 33 (195)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 468999999999 77766654
No 341
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=48.51 E-value=4.8 Score=31.06 Aligned_cols=20 Identities=25% Similarity=0.159 Sum_probs=15.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..|.|++|+||| ++.+.+.+
T Consensus 57 vll~Gp~GtGKT-------~la~~la~ 76 (297)
T 3b9p_A 57 LLLFGPPGNGKT-------LLARAVAT 76 (297)
T ss_dssp EEEESSSSSCHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHH
Confidence 457899999999 66665544
No 342
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=48.29 E-value=4.6 Score=27.84 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=15.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 10 i~v~G~~~~GKs-------sl~~~l~~ 29 (171)
T 1upt_A 10 ILILGLDGAGKT-------TILYRLQV 29 (171)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 468999999999 66666543
No 343
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=48.24 E-value=5.8 Score=32.55 Aligned_cols=20 Identities=20% Similarity=0.501 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+|+|.+++||| ||+..+.+
T Consensus 5 I~IVG~pnvGKS-------TL~n~Lt~ 24 (363)
T 1jal_A 5 CGIVGLPNVGKS-------TLFNALTK 24 (363)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHC
Confidence 468999999999 66666655
No 344
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=47.97 E-value=5 Score=31.44 Aligned_cols=22 Identities=18% Similarity=0.120 Sum_probs=16.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccC
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFS 61 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~ 61 (178)
..|.|++|+||| ++.+.+....
T Consensus 52 vLL~Gp~GtGKT-------~la~ala~~~ 73 (301)
T 3cf0_A 52 VLFYGPPGCGKT-------LLAKAIANEC 73 (301)
T ss_dssp EEEECSSSSSHH-------HHHHHHHHHT
T ss_pred EEEECCCCcCHH-------HHHHHHHHHh
Confidence 458899999999 6666665543
No 345
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=47.70 E-value=4.7 Score=28.10 Aligned_cols=20 Identities=30% Similarity=0.135 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 13 i~v~G~~~~GKs-------sli~~l~~ 32 (180)
T 2g6b_A 13 VMLVGDSGVGKT-------CLLVRFKD 32 (180)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHh
Confidence 468999999999 77766654
No 346
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=47.59 E-value=4.8 Score=27.93 Aligned_cols=20 Identities=25% Similarity=0.145 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 18 i~v~G~~~~GKS-------sli~~l~~ 37 (179)
T 1z0f_A 18 YIIIGDMGVGKS-------CLLHQFTE 37 (179)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 568899999999 77776654
No 347
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=47.47 E-value=4.7 Score=29.15 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=16.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|.+|+||| ||+..+.+
T Consensus 26 i~vvG~~~vGKS-------sLi~~l~~ 45 (195)
T 3cbq_A 26 VMLVGESGVGKS-------TLAGTFGG 45 (195)
T ss_dssp EEEECSTTSSHH-------HHHHHTCC
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 579999999999 88877754
No 348
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=47.45 E-value=4 Score=31.30 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=12.8
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..+.|++|||||++.
T Consensus 6 lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4668899999999444
No 349
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=47.07 E-value=4.8 Score=28.76 Aligned_cols=19 Identities=11% Similarity=0.092 Sum_probs=15.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|.+|+||| ||+..+.
T Consensus 23 i~ivG~~~vGKS-------sL~~~~~ 41 (184)
T 3ihw_A 23 VGIVGNLSSGKS-------ALVHRYL 41 (184)
T ss_dssp EEEECCTTSCHH-------HHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHh
Confidence 568999999999 7775444
No 350
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=47.03 E-value=4.4 Score=30.09 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=21.3
Q ss_pred ccccchhh-hccHHHHHHHhhhhhCCCCCCcc
Q psy860 14 PQFNGINE-HLTAQEMLECFSALRGIPGVKSG 44 (178)
Q Consensus 14 ~~~~~v~~-~~~~g~~~~~~~~i~G~~g~gk~ 44 (178)
+.||.+=- -++.|+ +..|.|++|+|||
T Consensus 17 ~~LD~~l~GGl~~G~----l~~i~G~pG~GKT 44 (251)
T 2zts_A 17 PGFDELIEGGFPEGT----TVLLTGGTGTGKT 44 (251)
T ss_dssp TTTGGGTTTSEETTC----EEEEECCTTSSHH
T ss_pred HHHHHhhcCCCCCCe----EEEEEeCCCCCHH
Confidence 56776542 588899 6669999999999
No 351
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=46.97 E-value=5.2 Score=28.22 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 21 i~v~G~~~~GKs-------sl~~~l~~ 40 (186)
T 1ksh_A 21 LLMLGLDNAGKT-------TILKKFNG 40 (186)
T ss_dssp EEEECSTTSSHH-------HHHHHHTT
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 578999999999 77776654
No 352
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=46.75 E-value=5 Score=28.42 Aligned_cols=20 Identities=25% Similarity=0.232 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 24 i~vvG~~~~GKS-------sli~~l~~ 43 (190)
T 3con_A 24 LVVVGAGGVGKS-------ALTIQLIQ 43 (190)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHc
Confidence 568999999999 67666553
No 353
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=46.65 E-value=5 Score=29.23 Aligned_cols=21 Identities=14% Similarity=-0.005 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
..++|+.|+||| ||+..+.+-
T Consensus 15 i~~~G~~g~GKT-------sl~~~l~~~ 35 (218)
T 1nrj_B 15 IIIAGPQNSGKT-------SLLTLLTTD 35 (218)
T ss_dssp EEEECSTTSSHH-------HHHHHHHHS
T ss_pred EEEECCCCCCHH-------HHHHHHhcC
Confidence 468999999999 666665543
No 354
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=46.36 E-value=5.9 Score=30.06 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=13.5
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
...|.|+.|||||++..
T Consensus 31 ~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46789999999995553
No 355
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=46.24 E-value=2.9 Score=31.02 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.2
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..+.|+.|||||++.
T Consensus 7 ~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 7 NLILIGAPGSGKGTQC 22 (217)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678899999999555
No 356
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=46.13 E-value=5.2 Score=27.96 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 21 i~v~G~~~~GKS-------sli~~l~~ 40 (187)
T 2a9k_A 21 VIMVGSGGVGKS-------ALTLQFMY 40 (187)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhh
Confidence 568999999999 77776654
No 357
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=45.71 E-value=5.3 Score=28.80 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|.+|+||| +|+..+.+
T Consensus 9 v~lvG~~~vGKS-------sL~~~~~~ 28 (192)
T 2cjw_A 9 VVLIGEQGVGKS-------TLANIFAG 28 (192)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 568999999999 66666553
No 358
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=45.49 E-value=5.3 Score=28.66 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 11 i~v~G~~~~GKS-------sli~~l~~ 30 (207)
T 1vg8_A 11 VIILGDSGVGKT-------SLMNQYVN 30 (207)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHc
Confidence 468999999999 77766654
No 359
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=45.34 E-value=4.6 Score=28.00 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=16.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 17 i~v~G~~~~GKs-------sli~~l~~ 36 (179)
T 2y8e_A 17 LVFLGEQSVGKT-------SLITRFMY 36 (179)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 568999999999 77776653
No 360
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=45.32 E-value=1.9 Score=33.15 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=15.9
Q ss_pred HHhhhhhCCCCCCccchHHH
Q psy860 30 ECFSALRGIPGVKSGPIIDY 49 (178)
Q Consensus 30 ~~~~~i~G~~g~gk~~~~~~ 49 (178)
..|..+.|++|+|||+....
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~ 46 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQV 46 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34788999999999955544
No 361
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=45.32 E-value=5.3 Score=27.85 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=16.4
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 15 i~v~G~~~~GKS-------sli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKS-------SLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHH-------HHHHHHHHC
T ss_pred EEEECcCCCCHH-------HHHHHHHcC
Confidence 568999999999 777666543
No 362
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=45.27 E-value=6.2 Score=30.55 Aligned_cols=16 Identities=19% Similarity=0.208 Sum_probs=12.4
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..+.|++|||||++.
T Consensus 4 ~I~l~G~~GsGKST~a 19 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWA 19 (301)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999444
No 363
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=45.24 E-value=5.4 Score=28.52 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 17 i~v~G~~~~GKS-------sli~~l~~ 36 (206)
T 2bov_A 17 VIMVGSGGVGKS-------ALTLQFMY 36 (206)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 468999999999 77666553
No 364
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=45.03 E-value=3.6 Score=33.15 Aligned_cols=27 Identities=7% Similarity=-0.058 Sum_probs=21.0
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
-++.|+ +..|.|++|+||| +++..++.
T Consensus 118 Gl~~G~----i~~I~G~~GsGKT-------tla~~la~ 144 (343)
T 1v5w_A 118 GIESMA----ITEAFGEFRTGKT-------QLSHTLCV 144 (343)
T ss_dssp SBCSSE----EEEEECCTTCTHH-------HHHHHHHH
T ss_pred CCCCCe----EEEEECCCCCCHH-------HHHHHHHH
Confidence 577888 5669999999999 66665554
No 365
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=44.78 E-value=5.6 Score=28.20 Aligned_cols=20 Identities=30% Similarity=0.130 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 19 i~v~G~~~~GKS-------sli~~l~~ 38 (196)
T 3tkl_A 19 LLLIGDSGVGKS-------CLLLRFAD 38 (196)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHc
Confidence 568999999999 77776654
No 366
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=44.73 E-value=2.3 Score=33.91 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=23.6
Q ss_pred ccccchh-hhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 14 PQFNGIN-EHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 14 ~~~~~v~-~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
+.|+.+- --++.|+ +..|.|++|+||| ++...+.
T Consensus 94 ~~LD~~L~GGl~~G~----i~~i~G~~GsGKT-------~la~~la 128 (324)
T 2z43_A 94 QALDGLLAGGIETRT----MTEFFGEFGSGKT-------QLCHQLS 128 (324)
T ss_dssp HHHHHHTTTSEETTS----EEEEEESTTSSHH-------HHHHHHH
T ss_pred hhHHHhcCCCCCCCc----EEEEECCCCCCHh-------HHHHHHH
Confidence 3444442 3577888 5669999999999 6665554
No 367
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=44.70 E-value=5.6 Score=27.80 Aligned_cols=19 Identities=26% Similarity=0.050 Sum_probs=15.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| ||+..+.
T Consensus 8 i~~~G~~~~GKs-------sl~~~l~ 26 (186)
T 1mh1_A 8 CVVVGDGAVGKT-------CLLISYT 26 (186)
T ss_dssp EEEECSTTSSHH-------HHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHH
Confidence 468899999999 7765554
No 368
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=44.48 E-value=4.7 Score=30.73 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=12.1
Q ss_pred hhhhhCCCCCCccchHHH
Q psy860 32 FSALRGIPGVKSGPIIDY 49 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~ 49 (178)
|..+-|++|+|||+....
T Consensus 27 ~I~~eG~~GsGKsT~~~~ 44 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQW 44 (227)
T ss_dssp EEEEECCC---CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 788999999999966544
No 369
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=44.18 E-value=6.4 Score=28.50 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=20.8
Q ss_pred CccccccchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860 11 GYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPII 47 (178)
Q Consensus 11 ~~~~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~ 47 (178)
|-..+++.+...+..++... ...|.|+.|+|||++.
T Consensus 27 g~~~~~~~l~~~l~~~~~~~-~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 27 GQEHVLTALANGLSLGRIHH-AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SCHHHHHHHHHHHHHTCCCS-EEEEECSTTSCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCCe-EEEEECCCCCCHHHHH
Confidence 33344555555555443111 3458899999999333
No 370
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=44.12 E-value=4.9 Score=30.14 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=14.5
Q ss_pred hhhhhCCCCCCccchHHH
Q psy860 32 FSALRGIPGVKSGPIIDY 49 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~ 49 (178)
|..+-|++|+|||+....
T Consensus 8 ~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 778899999999955543
No 371
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=43.91 E-value=3.9 Score=30.67 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=13.2
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+..+.|+.|+|||++.
T Consensus 18 ~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQA 33 (233)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5678999999999555
No 372
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=43.78 E-value=4.9 Score=29.92 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.1
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
|.++-|+.||||||..
T Consensus 4 FI~~EG~dGsGKsTq~ 19 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVI 19 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 6778899999999444
No 373
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=43.71 E-value=5.9 Score=28.09 Aligned_cols=20 Identities=20% Similarity=0.036 Sum_probs=16.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 25 i~vvG~~~~GKS-------sli~~l~~ 44 (189)
T 2gf9_A 25 LLLIGNSSVGKT-------SFLFRYAD 44 (189)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 468999999999 77766654
No 374
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=43.71 E-value=6.9 Score=29.64 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=10.4
Q ss_pred hhhhCCCCCCcc
Q psy860 33 SALRGIPGVKSG 44 (178)
Q Consensus 33 ~~i~G~~g~gk~ 44 (178)
.-|.|++|+|||
T Consensus 47 vll~G~~GtGKT 58 (268)
T 2r62_A 47 VLLVGPPGTGKT 58 (268)
T ss_dssp CCCBCSSCSSHH
T ss_pred EEEECCCCCcHH
Confidence 347899999999
No 375
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=43.69 E-value=6.4 Score=30.93 Aligned_cols=21 Identities=24% Similarity=0.116 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.-|.|++|+||| |+++.+...
T Consensus 40 lll~G~~GtGKT-------~la~~i~~~ 60 (324)
T 1l8q_A 40 IFIYGSVGTGKT-------HLLQAAGNE 60 (324)
T ss_dssp EEEECSSSSSHH-------HHHHHHHHH
T ss_pred EEEECCCCCcHH-------HHHHHHHHH
Confidence 447899999999 666665543
No 376
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=43.68 E-value=5 Score=30.64 Aligned_cols=23 Identities=4% Similarity=0.047 Sum_probs=18.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhccC
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRFS 61 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~~ 61 (178)
+.+|.|+.|+||| |+.+.+....
T Consensus 26 ~I~ieG~~GsGKS-------T~~~~L~~~l 48 (263)
T 1p5z_B 26 KISIEGNIAAGKS-------TFVNILKQLC 48 (263)
T ss_dssp EEEEECSTTSSHH-------HHHTTTGGGC
T ss_pred EEEEECCCCCCHH-------HHHHHHHHhc
Confidence 7789999999999 7777665443
No 377
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=43.67 E-value=5.1 Score=28.15 Aligned_cols=20 Identities=25% Similarity=0.188 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 13 i~v~G~~~~GKS-------sli~~l~~ 32 (186)
T 2bme_A 13 FLVIGNAGTGKS-------CLLHQFIE 32 (186)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 468899999999 77766553
No 378
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=43.57 E-value=6 Score=27.74 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 21 i~v~G~~~~GKS-------sl~~~l~~ 40 (183)
T 3kkq_A 21 LVVVGDGGVGKS-------ALTIQFFQ 40 (183)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 468999999999 66666553
No 379
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=43.51 E-value=7.2 Score=27.44 Aligned_cols=21 Identities=10% Similarity=-0.267 Sum_probs=16.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||++.+.+-
T Consensus 17 i~vvG~~~~GKs-------sL~~~l~~~ 37 (198)
T 3t1o_A 17 IVYYGPGLSGKT-------TNLKWIYSK 37 (198)
T ss_dssp EEEECSTTSSHH-------HHHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHHhh
Confidence 468999999999 676655543
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=43.43 E-value=6.4 Score=28.21 Aligned_cols=20 Identities=15% Similarity=0.021 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 11 i~v~G~~~~GKS-------sli~~l~~ 30 (203)
T 1zbd_A 11 ILIIGNSSVGKT-------SFLFRYAD 30 (203)
T ss_dssp EEEECSTTSSHH-------HHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 468999999999 77766654
No 381
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=43.33 E-value=5.2 Score=28.32 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 10 i~v~G~~~vGKS-------sli~~l~~ 29 (184)
T 1m7b_A 10 IVVVGDSQCGKT-------ALLHVFAK 29 (184)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 468899999999 77666554
No 382
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=43.28 E-value=5.1 Score=28.45 Aligned_cols=21 Identities=5% Similarity=-0.010 Sum_probs=16.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 24 i~v~G~~~~GKS-------sli~~l~~~ 44 (190)
T 2h57_A 24 VLCLGLDNSGKT-------TIINKLKPS 44 (190)
T ss_dssp EEEEECTTSSHH-------HHHHHTSCG
T ss_pred EEEECCCCCCHH-------HHHHHHhcC
Confidence 568999999999 777766543
No 383
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=42.97 E-value=6.2 Score=28.23 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.1
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 29 i~vvG~~~~GKS-------sLi~~l~~ 48 (192)
T 2il1_A 29 VIIIGSRGVGKT-------SLMERFTD 48 (192)
T ss_dssp EEEECSTTSSHH-------HHHHHHCC
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 468999999999 77776654
No 384
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=42.80 E-value=6.2 Score=28.02 Aligned_cols=21 Identities=5% Similarity=0.109 Sum_probs=16.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 20 i~v~G~~~~GKS-------sl~~~l~~~ 40 (199)
T 4bas_A 20 VVMCGLDNSGKT-------TIINQVKPA 40 (199)
T ss_dssp EEEECCTTSCHH-------HHHHHHSCC
T ss_pred EEEECCCCCCHH-------HHHHHHhcC
Confidence 468999999999 777766643
No 385
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=42.77 E-value=6.5 Score=29.05 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=16.4
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 32 I~vvG~~~vGKS-------sLin~l~~ 51 (228)
T 2qu8_A 32 IILSGAPNVGKS-------SFMNIVSR 51 (228)
T ss_dssp EEEECSTTSSHH-------HHHHHHTT
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 579999999999 77776654
No 386
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=42.68 E-value=5.3 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=16.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 11 i~vvG~~~~GKS-------sli~~l~~ 30 (199)
T 2gf0_A 11 VVVFGAGGVGKS-------SLVLRFVK 30 (199)
T ss_dssp EEEEECTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCcHH-------HHHHHHHc
Confidence 468899999999 77766654
No 387
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=42.48 E-value=6.4 Score=27.45 Aligned_cols=20 Identities=25% Similarity=-0.007 Sum_probs=15.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 11 i~v~G~~~~GKs-------sl~~~~~~ 30 (182)
T 3bwd_D 11 CVTVGDGAVGKT-------CLLISYTS 30 (182)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 568899999999 66666553
No 388
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=42.17 E-value=6.4 Score=27.90 Aligned_cols=20 Identities=15% Similarity=-0.114 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 23 i~v~G~~~~GKS-------sli~~l~~ 42 (189)
T 1z06_A 23 IIVIGDSNVGKT-------CLTYRFCA 42 (189)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 568999999999 77766653
No 389
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=42.17 E-value=5.7 Score=30.06 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=16.5
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
-.+|+|..|+||| ||+..+++
T Consensus 24 ~I~lvG~~g~GKS-------tl~n~l~~ 44 (260)
T 2xtp_A 24 RIILVGKTGTGKS-------AAGNSILR 44 (260)
T ss_dssp EEEEEECTTSCHH-------HHHHHHHT
T ss_pred EEEEECCCCCCHH-------HHHHHHhC
Confidence 3679999999999 66666654
No 390
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=42.11 E-value=5.4 Score=27.87 Aligned_cols=20 Identities=25% Similarity=0.322 Sum_probs=14.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..|.|+.|+||| ++++.+..
T Consensus 46 vll~G~~G~GKT-------~la~~~~~ 65 (187)
T 2p65_A 46 PILLGDPGVGKT-------AIVEGLAI 65 (187)
T ss_dssp EEEESCGGGCHH-------HHHHHHHH
T ss_pred eEEECCCCCCHH-------HHHHHHHH
Confidence 347899999999 66655543
No 391
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=42.09 E-value=5.5 Score=28.66 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=16.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 27 i~vvG~~~~GKS-------sli~~l~~~ 47 (201)
T 3oes_A 27 VVILGYRCVGKT-------SLAHQFVEG 47 (201)
T ss_dssp EEEEESTTSSHH-------HHHHHHHHS
T ss_pred EEEECCCCcCHH-------HHHHHHHhC
Confidence 578999999999 777766643
No 392
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=42.09 E-value=6.5 Score=27.95 Aligned_cols=20 Identities=25% Similarity=0.125 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..++|..|+||| ||+..+.+
T Consensus 24 i~v~G~~~~GKS-------sli~~l~~ 43 (191)
T 2a5j_A 24 YIIIGDTGVGKS-------CLLLQFTD 43 (191)
T ss_dssp EEEESSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHhc
Confidence 468899999999 77766554
No 393
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=41.97 E-value=6.5 Score=28.11 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 31 i~v~G~~~vGKS-------sli~~l~~ 50 (196)
T 2atv_A 31 LAIFGRAGVGKS-------ALVVRFLT 50 (196)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 678999999999 77766654
No 394
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=41.92 E-value=7.8 Score=27.10 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=13.0
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
...|.|..|||||++.
T Consensus 9 ~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLA 24 (168)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4568899999999655
No 395
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=41.90 E-value=7 Score=27.94 Aligned_cols=20 Identities=25% Similarity=0.126 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 23 i~~~G~~~~GKs-------sl~~~l~~ 42 (201)
T 2q3h_A 23 CVLVGDGAVGKT-------SLVVSYTT 42 (201)
T ss_dssp EEEECSTTSSHH-------HHHHHHHC
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 578999999999 66665553
No 396
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=41.89 E-value=6.8 Score=29.70 Aligned_cols=18 Identities=6% Similarity=0.065 Sum_probs=14.6
Q ss_pred hhhhhCCCCCCccchHHH
Q psy860 32 FSALRGIPGVKSGPIIDY 49 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~ 49 (178)
..+|.|+.|||||++...
T Consensus 24 iI~I~G~~GSGKST~a~~ 41 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAK 41 (252)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999966643
No 397
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=41.87 E-value=6.6 Score=27.72 Aligned_cols=20 Identities=25% Similarity=0.199 Sum_probs=16.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 18 i~v~G~~~~GKs-------sli~~l~~ 37 (195)
T 1x3s_A 18 ILIIGESGVGKS-------SLLLRFTD 37 (195)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 568999999999 77766654
No 398
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=41.78 E-value=6.6 Score=27.96 Aligned_cols=20 Identities=20% Similarity=0.022 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 26 i~~vG~~~~GKS-------sl~~~l~~ 45 (194)
T 3reg_A 26 IVVVGDGAVGKT-------CLLLAFSK 45 (194)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHhc
Confidence 678999999999 77766654
No 399
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=41.61 E-value=6.9 Score=30.03 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=16.3
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 8 I~lvG~~nvGKT-------sL~n~l~g 27 (258)
T 3a1s_A 8 VALAGCPNVGKT-------SLFNALTG 27 (258)
T ss_dssp EEEECCTTSSHH-------HHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHHC
Confidence 568999999999 77776665
No 400
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=41.42 E-value=6.4 Score=32.25 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=12.1
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
.+|+|.+|+|||+.+
T Consensus 4 v~IVG~pnvGKSTL~ 18 (368)
T 2dby_A 4 VGIVGLPNVGKSTLF 18 (368)
T ss_dssp EEEECCSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 468999999999444
No 401
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=41.40 E-value=6.7 Score=27.85 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 25 i~v~G~~~~GKS-------sli~~l~~ 44 (188)
T 1zd9_A 25 LTLVGLQYSGKT-------TFVNVIAS 44 (188)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHc
Confidence 568999999999 77766653
No 402
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=41.36 E-value=5.7 Score=28.35 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 26 i~vvG~~~~GKS-------sli~~l~~ 45 (192)
T 2fg5_A 26 VCLLGDTGVGKS-------SIVCRFVQ 45 (192)
T ss_dssp EEEEECTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHhc
Confidence 578999999999 77766654
No 403
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=41.29 E-value=5.9 Score=28.84 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=17.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 14 i~vvG~~~~GKS-------sli~~l~~ 33 (218)
T 4djt_A 14 ICLIGDGGVGKT-------TYINRVLD 33 (218)
T ss_dssp EEEECCTTSSHH-------HHHCBCTT
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 568999999999 88887764
No 404
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=41.29 E-value=6.2 Score=30.33 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=16.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.|-
T Consensus 4 I~lvG~~n~GKS-------TL~n~L~g~ 24 (256)
T 3iby_A 4 ALLIGNPNCGKT-------TLFNALTNA 24 (256)
T ss_dssp EEEEESTTSSHH-------HHHHHHHTT
T ss_pred EEEECCCCCCHH-------HHHHHHHCC
Confidence 468899999999 777776654
No 405
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=41.05 E-value=5.9 Score=30.52 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=16.1
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|.+|+||| ||+..+.+
T Consensus 11 I~vvG~~g~GKS-------TLin~L~~ 30 (274)
T 3t5d_A 11 LMVVGESGLGKS-------TLINSLFL 30 (274)
T ss_dssp EEEEECTTSSHH-------HHHHHHSS
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 568999999999 77776544
No 406
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=40.80 E-value=6 Score=28.17 Aligned_cols=20 Identities=15% Similarity=0.016 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 26 i~v~G~~~~GKS-------sli~~l~~ 45 (191)
T 3dz8_A 26 LLIIGNSSVGKT-------SFLFRYAD 45 (191)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCcCHH-------HHHHHHhc
Confidence 468999999999 67666554
No 407
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=40.79 E-value=4.9 Score=31.33 Aligned_cols=16 Identities=25% Similarity=0.439 Sum_probs=13.5
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+.+|.|+.|||||++.
T Consensus 77 iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVA 92 (281)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999555
No 408
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=40.78 E-value=7.6 Score=29.66 Aligned_cols=21 Identities=24% Similarity=0.150 Sum_probs=15.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.-|.|++|+||| ++.+.+...
T Consensus 54 ~ll~G~~GtGKT-------~la~~la~~ 74 (285)
T 3h4m_A 54 ILLYGPPGTGKT-------LLAKAVATE 74 (285)
T ss_dssp EEEESSSSSSHH-------HHHHHHHHH
T ss_pred EEEECCCCCcHH-------HHHHHHHHH
Confidence 457899999999 666655443
No 409
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=40.71 E-value=6.3 Score=27.55 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| ||+..+.
T Consensus 9 i~~~G~~~~GKS-------sli~~l~ 27 (181)
T 3t5g_A 9 IAILGYRSVGKS-------SLTIQFV 27 (181)
T ss_dssp EEEEESTTSSHH-------HHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHH
Confidence 468999999999 7766655
No 410
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=40.62 E-value=7.1 Score=28.01 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=16.1
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 31 i~v~G~~~~GKS-------sli~~l~~ 50 (199)
T 2p5s_A 31 IVLAGDAAVGKS-------SFLMRLCK 50 (199)
T ss_dssp EEEESSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHh
Confidence 578999999999 77766654
No 411
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=40.58 E-value=6.4 Score=27.83 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| ||+..+.
T Consensus 19 i~v~G~~~~GKs-------sl~~~l~ 37 (187)
T 1zj6_A 19 VIIVGLDNAGKT-------TILYQFS 37 (187)
T ss_dssp EEEEESTTSSHH-------HHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHh
Confidence 578999999999 7776665
No 412
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=40.41 E-value=6.1 Score=27.70 Aligned_cols=19 Identities=26% Similarity=0.046 Sum_probs=7.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| ||+..+.
T Consensus 11 i~v~G~~~~GKs-------sl~~~l~ 29 (183)
T 2fu5_C 11 LLLIGDSGVGKT-------CVLFRFS 29 (183)
T ss_dssp EEEECCCCC-----------------
T ss_pred EEEECCCCCCHH-------HHHHHHH
Confidence 468899999999 6666554
No 413
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=40.39 E-value=6.5 Score=28.34 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 28 i~v~G~~~~GKS-------sLi~~l~~ 47 (200)
T 2o52_A 28 FLVIGSAGTGKS-------CLLHQFIE 47 (200)
T ss_dssp EEEEESTTSSHH-------HHHHHHHC
T ss_pred EEEECcCCCCHH-------HHHHHHHh
Confidence 568999999999 77666553
No 414
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=40.37 E-value=6.1 Score=28.80 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 29 i~lvG~~~vGKS-------sLi~~l~~ 48 (201)
T 2ew1_A 29 IVLIGNAGVGKT-------CLVRRFTQ 48 (201)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHHh
Confidence 568999999999 77666543
No 415
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=40.18 E-value=7.2 Score=28.05 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=16.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 23 i~v~G~~~~GKS-------sli~~l~~ 42 (213)
T 3cph_A 23 ILLIGDSGVGKS-------CLLVRFVE 42 (213)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 578999999999 77666553
No 416
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=39.96 E-value=7.3 Score=27.75 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| +|+..+.+
T Consensus 24 i~vvG~~~vGKT-------sLi~~l~~ 43 (187)
T 3c5c_A 24 LAILGRRGAGKS-------ALTVKFLT 43 (187)
T ss_dssp EEEECCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCcHH-------HHHHHHHh
Confidence 568999999999 77665543
No 417
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=39.91 E-value=11 Score=25.88 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=16.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccC
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFS 61 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~ 61 (178)
.-|.|++|+||+ ++.+.+....
T Consensus 27 vll~G~~GtGKt-------~lA~~i~~~~ 48 (145)
T 3n70_A 27 VWLYGAPGTGRM-------TGARYLHQFG 48 (145)
T ss_dssp EEEESSTTSSHH-------HHHHHHHHSS
T ss_pred EEEECCCCCCHH-------HHHHHHHHhC
Confidence 458999999999 6666665543
No 418
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=39.57 E-value=6.4 Score=28.33 Aligned_cols=20 Identities=30% Similarity=0.130 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 11 i~v~G~~~~GKS-------sli~~l~~ 30 (206)
T 2bcg_Y 11 LLLIGNSGVGKS-------CLLLRFSD 30 (206)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 468899999999 77766654
No 419
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=39.49 E-value=7.5 Score=28.14 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 10 i~vvG~~~~GKT-------sli~~l~~ 29 (214)
T 2fh5_B 10 VLFVGLCDSGKT-------LLFVRLLT 29 (214)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 568999999999 77766553
No 420
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=39.33 E-value=8.9 Score=27.36 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=11.8
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|.|+.|+|||++.
T Consensus 41 ~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 41 LLFSGPPGTGKTATA 55 (226)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999433
No 421
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=39.11 E-value=6.5 Score=28.72 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=12.2
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
.+++|..|+|||+..
T Consensus 33 i~i~G~~g~GKTTl~ 47 (221)
T 2wsm_A 33 VNIMGAIGSGKTLLI 47 (221)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 678999999999333
No 422
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=39.10 E-value=8.2 Score=27.99 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=16.4
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 28 i~vvG~~~~GKS-------sLi~~l~~ 47 (217)
T 2f7s_A 28 LLALGDSGVGKT-------TFLYRYTD 47 (217)
T ss_dssp EEEESCTTSSHH-------HHHHHHHC
T ss_pred EEEECcCCCCHH-------HHHHHHhc
Confidence 568999999999 77777664
No 423
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=39.08 E-value=5.3 Score=27.86 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| +|+..+.+
T Consensus 10 i~~vG~~~vGKT-------sli~~l~~ 29 (178)
T 2iwr_A 10 LGVLGDARSGKS-------SLIHRFLT 29 (178)
T ss_dssp EEEECCGGGCHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 468999999999 66666554
No 424
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=38.95 E-value=8.6 Score=28.79 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=10.0
Q ss_pred hhhCCCCCCcc
Q psy860 34 ALRGIPGVKSG 44 (178)
Q Consensus 34 ~i~G~~g~gk~ 44 (178)
-|.|++|+|||
T Consensus 43 ll~G~~GtGKT 53 (262)
T 2qz4_A 43 LLLGPPGCGKT 53 (262)
T ss_dssp EEESCTTSSHH
T ss_pred EEECCCCCCHH
Confidence 47899999999
No 425
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=38.58 E-value=6.1 Score=27.84 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=15.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 24 i~v~G~~~~GKS-------sli~~l~~ 43 (181)
T 2h17_A 24 VIIVGLDNAGKT-------TILYQFSM 43 (181)
T ss_dssp EEEEEETTSSHH-------HHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 568999999999 77666653
No 426
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=38.30 E-value=7.6 Score=28.84 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|.+|+||| +|+..+.+
T Consensus 40 VvlvG~~~vGKS-------SLl~r~~~ 59 (211)
T 2g3y_A 40 VVLIGEQGVGKS-------TLANIFAG 59 (211)
T ss_dssp EEEECCTTSSHH-------HHHHHHHC
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 689999999999 77766654
No 427
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=38.24 E-value=3.6 Score=33.14 Aligned_cols=30 Identities=10% Similarity=0.080 Sum_probs=21.6
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchHH
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPIID 48 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~ 48 (178)
..+|+..+.+ .|. -..|.|++|+|||+...
T Consensus 133 ~~~H~~~v~~-~g~----~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 133 TSLHGVLVDV-YGV----GVLITGDSGIGKSETAL 162 (314)
T ss_dssp EEEESEEEEE-TTE----EEEEEESTTSSHHHHHH
T ss_pred eeeeEEEEEE-CCE----EEEEEeCCCCCHHHHHH
Confidence 4567766666 344 57899999999994443
No 428
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=38.09 E-value=7.2 Score=30.35 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=18.4
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
..+++|..++||| ||+..++|-
T Consensus 26 ~I~vvG~~~~GKS-------Tlln~l~g~ 47 (315)
T 1jwy_B 26 QIVVVGSQSSGKS-------SVLENIVGR 47 (315)
T ss_dssp EEEEEECSSSSHH-------HHHHHHHTS
T ss_pred eEEEEcCCCCCHH-------HHHHHHHCC
Confidence 4779999999999 787777765
No 429
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=37.98 E-value=7.4 Score=28.41 Aligned_cols=20 Identities=25% Similarity=0.126 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 37 i~vvG~~~vGKS-------sli~~l~~ 56 (214)
T 2j1l_A 37 VVLVGDGGCGKT-------SLLMVFAD 56 (214)
T ss_dssp EEEEECTTSSHH-------HHHHHHHC
T ss_pred EEEECcCCCCHH-------HHHHHHHc
Confidence 678999999999 77666654
No 430
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=37.67 E-value=8.9 Score=31.95 Aligned_cols=20 Identities=25% Similarity=0.132 Sum_probs=15.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..|.|++|+||| |+++.+..
T Consensus 133 lll~Gp~G~GKT-------tLa~aia~ 152 (440)
T 2z4s_A 133 LFIYGGVGLGKT-------HLLQSIGN 152 (440)
T ss_dssp EEEECSSSSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHH
Confidence 458899999999 66665554
No 431
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=37.28 E-value=7.7 Score=30.00 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=16.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 6 I~lvG~~n~GKS-------TLin~l~g~ 26 (274)
T 3i8s_A 6 IGLIGNPNSGKT-------TLFNQLTGS 26 (274)
T ss_dssp EEEEECTTSSHH-------HHHHHHHTT
T ss_pred EEEECCCCCCHH-------HHHHHHhCC
Confidence 568999999999 777776654
No 432
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=37.08 E-value=7.3 Score=28.18 Aligned_cols=20 Identities=15% Similarity=-0.076 Sum_probs=16.1
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 28 i~vvG~~~~GKS-------sli~~l~~ 47 (207)
T 2fv8_A 28 LVVVGDGACGKT-------CLLIVFSK 47 (207)
T ss_dssp EEEEECTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHhc
Confidence 678999999999 67666554
No 433
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=37.06 E-value=8.9 Score=29.36 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=12.4
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
.++.|+.|||||+..
T Consensus 11 ~~~~G~pGsGKsT~a 25 (230)
T 3gmt_A 11 LILLGAPGAGKGTQA 25 (230)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred eeeECCCCCCHHHHH
Confidence 468999999999555
No 434
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=36.98 E-value=5.8 Score=28.34 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=3.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| ||+..+.
T Consensus 23 i~v~G~~~~GKs-------sli~~l~ 41 (208)
T 2yc2_C 23 VAVVGEATVGKS-------ALISMFT 41 (208)
T ss_dssp EEEC----------------------
T ss_pred EEEECCCCCCHH-------HHHHHHH
Confidence 568999999999 6655544
No 435
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=36.98 E-value=9 Score=31.15 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=13.0
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
...|.|++|||||++.
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4679999999999444
No 436
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=36.93 E-value=7.5 Score=28.37 Aligned_cols=21 Identities=14% Similarity=-0.020 Sum_probs=16.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 31 i~vvG~~~vGKS-------sLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKT-------ALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHH-------HHHHHHHHS
T ss_pred EEEECCCCCCHH-------HHHHHHhcC
Confidence 679999999999 777666543
No 437
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=36.92 E-value=7.4 Score=27.87 Aligned_cols=20 Identities=10% Similarity=0.042 Sum_probs=16.4
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| +|+..+.+
T Consensus 32 i~v~G~~~vGKS-------sLi~~l~~ 51 (192)
T 2b6h_A 32 ILMVGLDAAGKT-------TILYKLKL 51 (192)
T ss_dssp EEEEESTTSSHH-------HHHHHHCS
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 679999999999 77776653
No 438
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=36.70 E-value=4.1 Score=34.78 Aligned_cols=27 Identities=22% Similarity=0.115 Sum_probs=19.5
Q ss_pred hccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 22 HLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 22 ~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+-+|+ ...|+|++|+||| ||+..++.
T Consensus 147 pi~kGq----~~~i~G~sGvGKT-------tL~~~l~~ 173 (473)
T 1sky_E 147 PYIKGG----KIGLFGGAGVGKT-------VLIQELIH 173 (473)
T ss_dssp CEETTC----EEEEECCSSSCHH-------HHHHHHHH
T ss_pred hhccCC----EEEEECCCCCCcc-------HHHHHHHh
Confidence 444666 5679999999999 66665543
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=36.66 E-value=6.4 Score=29.53 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=12.7
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
+.++-|+.|+|||+..
T Consensus 4 ~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFV 19 (241)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4668899999999444
No 440
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=36.43 E-value=5.8 Score=29.09 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=13.0
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
..+|.|+.|+|||++.
T Consensus 5 ~i~i~G~~gsGkst~~ 20 (219)
T 2h92_A 5 NIALDGPAAAGKSTIA 20 (219)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999554
No 441
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=42.68 E-value=7.4 Score=27.98 Aligned_cols=20 Identities=25% Similarity=-0.007 Sum_probs=15.3
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
-.+++|..|+||| ||+..+.
T Consensus 32 ki~v~G~~~~GKS-------sli~~l~ 51 (204)
T 3th5_A 32 KCVVVGDGAVGKT-------CLLISYT 51 (204)
Confidence 3779999999999 6665443
No 442
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=36.43 E-value=6.5 Score=29.53 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=14.4
Q ss_pred hhhhhCCCCCCccchHHH
Q psy860 32 FSALRGIPGVKSGPIIDY 49 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~ 49 (178)
|..+-|++|+|||+....
T Consensus 5 ~i~~eG~~gsGKsT~~~~ 22 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNV 22 (213)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 677889999999955544
No 443
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=36.36 E-value=9.5 Score=28.03 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=12.9
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
..+|.|..|||||++.
T Consensus 14 iIgltG~~GSGKSTva 29 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVC 29 (192)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3568899999999555
No 444
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=36.28 E-value=7.7 Score=27.54 Aligned_cols=20 Identities=25% Similarity=0.066 Sum_probs=15.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| +|+..+.+
T Consensus 21 i~v~G~~~~GKs-------sli~~l~~ 40 (194)
T 2atx_A 21 CVVVGDGAVGKT-------CLLMSYAN 40 (194)
T ss_dssp EEEEECTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 568999999999 66665553
No 445
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=36.07 E-value=29 Score=25.79 Aligned_cols=24 Identities=4% Similarity=-0.274 Sum_probs=18.4
Q ss_pred HHHHHHHHHHh--CCCCeEEeeCCCC
Q psy860 147 KRKLSTAMALI--GDRDDGFQKLPFS 170 (178)
Q Consensus 147 kQRv~IAraL~--~~P~~lllDEPt~ 170 (178)
++.+.-|+..+ .+.|+|||||.+.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~ 131 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTY 131 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 55666677777 6789999999864
No 446
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=36.03 E-value=4.4 Score=33.07 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=15.5
Q ss_pred ccHHHHHHHhhhhhCCCCCCcc
Q psy860 23 LTAQEMLECFSALRGIPGVKSG 44 (178)
Q Consensus 23 ~~~g~~~~~~~~i~G~~g~gk~ 44 (178)
++.|+ +..|.|++|+|||
T Consensus 60 l~~G~----ii~I~G~pGsGKT 77 (356)
T 1u94_A 60 LPMGR----IVEIYGPESSGKT 77 (356)
T ss_dssp EETTS----EEEEECSTTSSHH
T ss_pred ccCCe----EEEEECCCCCCHH
Confidence 67888 5669999999999
No 447
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=35.72 E-value=6.5 Score=35.60 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=21.6
Q ss_pred hhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 20 NEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 20 ~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
++.+..++ ...+.|++|+||| ++.+.+.+.
T Consensus 505 ~~~~~~~~----~vLL~GppGtGKT-------~Lakala~~ 534 (806)
T 1ypw_A 505 KFGMTPSK----GVLFYGPPGCGKT-------LLAKAIANE 534 (806)
T ss_dssp CCCCCCCC----CCCCBCCTTSSHH-------HHHHHHHHH
T ss_pred hcCCCCCc----eeEEECCCCCCHH-------HHHHHHHHH
Confidence 34455666 4569999999999 777766654
No 448
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=35.54 E-value=9.7 Score=29.43 Aligned_cols=22 Identities=9% Similarity=0.214 Sum_probs=16.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccC
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFS 61 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~ 61 (178)
..++|.+|+||| |++..+.+-.
T Consensus 102 v~~vG~~~vGKS-------slin~l~~~~ 123 (262)
T 3cnl_A 102 VLIVGVPNTGKS-------TIINKLKGKR 123 (262)
T ss_dssp EEEEESTTSSHH-------HHHHHHHTTC
T ss_pred eEEeCCCCCCHH-------HHHHHHhccc
Confidence 457899999999 7777766543
No 449
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=35.37 E-value=11 Score=31.49 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=23.9
Q ss_pred cchhhhccHHHHHHHhhhhhCCCCCCccchHHHHHHHhhhhhccCCc
Q psy860 17 NGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGSAIRFSPF 63 (178)
Q Consensus 17 ~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~~~~itll~~~~~~~~~ 63 (178)
+.+.-.+..+.. --.-|.|++|+||| |+.+.+......
T Consensus 39 ~~L~~~i~~~~~--~~vLL~GppGtGKT-------tlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHL--HSMILWGPPGTGKT-------TLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCC--CEEEEECSTTSSHH-------HHHHHHHHHTTC
T ss_pred HHHHHHHHcCCC--cEEEEECCCCCcHH-------HHHHHHHHHhCC
Confidence 445555555552 01457899999999 666666655433
No 450
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=35.35 E-value=6.8 Score=28.11 Aligned_cols=20 Identities=30% Similarity=0.130 Sum_probs=16.5
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 36 i~vvG~~~~GKS-------sli~~l~~ 55 (199)
T 3l0i_B 36 LLLIGDSGVGKS-------CLLLRFAD 55 (199)
T ss_dssp EEEECCTTSCCT-------TTTTSSBC
T ss_pred EEEECCCCCCHH-------HHHHHHhc
Confidence 568999999999 77777664
No 451
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=35.22 E-value=8.3 Score=27.74 Aligned_cols=20 Identities=15% Similarity=-0.059 Sum_probs=16.1
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 28 i~vvG~~~~GKS-------sli~~l~~ 47 (201)
T 2gco_A 28 LVIVGDGACGKT-------CLLIVFSK 47 (201)
T ss_dssp EEEEESTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 578999999999 77766654
No 452
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=35.16 E-value=10 Score=30.51 Aligned_cols=15 Identities=13% Similarity=0.016 Sum_probs=12.0
Q ss_pred hhhhhCCCCCCccch
Q psy860 32 FSALRGIPGVKSGPI 46 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~ 46 (178)
...|.|++|+|||++
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 356899999999933
No 453
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=35.04 E-value=8.4 Score=28.20 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=14.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| ||+..+.
T Consensus 41 i~ivG~~gvGKT-------tl~~~l~ 59 (226)
T 2hf9_A 41 FDFMGAIGSGKT-------LLIEKLI 59 (226)
T ss_dssp EEEEESTTSSHH-------HHHHHHH
T ss_pred EEEEcCCCCCHH-------HHHHHHH
Confidence 578899999999 5555544
No 454
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=35.00 E-value=8.2 Score=32.22 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.1
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..+|+|.+|+||| ||+..+++
T Consensus 25 ~V~lvG~~nvGKS-------TL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKS-------TIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHH-------HHHHHHEE
T ss_pred EEEEECCCCCcHH-------HHHHHHhC
Confidence 3789999999999 77776655
No 455
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=34.62 E-value=8.6 Score=29.52 Aligned_cols=21 Identities=14% Similarity=0.085 Sum_probs=17.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..++||| ||+..+.+-
T Consensus 29 i~vvG~~~~GKS-------SLln~l~g~ 49 (299)
T 2aka_B 29 IAVVGGQSAGKS-------SVLENFVGR 49 (299)
T ss_dssp EEEEEBTTSCHH-------HHHHHHHTS
T ss_pred EEEEeCCCCCHH-------HHHHHHHCC
Confidence 679999999999 787777765
No 456
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=34.59 E-value=9.1 Score=29.31 Aligned_cols=20 Identities=25% Similarity=0.255 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 42 I~vvG~~g~GKS-------SLin~l~~ 61 (270)
T 1h65_A 42 ILVMGKGGVGKS-------STVNSIIG 61 (270)
T ss_dssp EEEEESTTSSHH-------HHHHHHHT
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 678999999999 66665554
No 457
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=34.58 E-value=9.1 Score=27.38 Aligned_cols=20 Identities=10% Similarity=0.111 Sum_probs=15.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
..++|..|+||| +|+..+.+
T Consensus 23 i~~vG~~~vGKT-------sLi~~l~~ 42 (196)
T 3llu_A 23 ILLMGLRRSGKS-------SIQKVVFH 42 (196)
T ss_dssp EEEEESTTSSHH-------HHHHHHHS
T ss_pred EEEECCCCCCHH-------HHHHHHHh
Confidence 568999999999 66665544
No 458
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=34.53 E-value=19 Score=27.59 Aligned_cols=17 Identities=6% Similarity=-0.273 Sum_probs=12.9
Q ss_pred HHHhCCCCeEEeeCCCC
Q psy860 154 MALIGDRDDGFQKLPFS 170 (178)
Q Consensus 154 raL~~~P~~lllDEPt~ 170 (178)
.++..+|+++++|||-.
T Consensus 79 ~~L~~~pdlvIVDElG~ 95 (228)
T 2r8r_A 79 ALLKAAPSLVLVDELAH 95 (228)
T ss_dssp HHHHHCCSEEEESCTTC
T ss_pred HHHhcCCCEEEEeCCCC
Confidence 33446899999999863
No 459
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=34.32 E-value=10 Score=27.74 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=16.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| +|+..+.+
T Consensus 30 i~vvG~~~vGKS-------sL~~~l~~ 49 (214)
T 3q3j_B 30 LVLVGDVQCGKT-------AMLQVLAK 49 (214)
T ss_dssp EEEECSTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHhc
Confidence 679999999999 77766554
No 460
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=34.29 E-value=4.2 Score=29.69 Aligned_cols=21 Identities=10% Similarity=0.049 Sum_probs=17.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 32 i~v~G~~~~GKS-------slin~l~~~ 52 (223)
T 4dhe_A 32 IAFAGRSNAGKS-------TAINVLCNQ 52 (223)
T ss_dssp EEEEESCHHHHH-------HHHHHHTTC
T ss_pred EEEEcCCCCCHH-------HHHHHHhCC
Confidence 578999999999 777777654
No 461
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=33.76 E-value=9.5 Score=29.10 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=17.0
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|..|+||| ||+..+.+-
T Consensus 39 I~lvG~~g~GKS-------SLin~l~~~ 59 (262)
T 3def_A 39 VLVLGKGGVGKS-------STVNSLIGE 59 (262)
T ss_dssp EEEEECTTSSHH-------HHHHHHHTS
T ss_pred EEEECCCCCCHH-------HHHHHHhCC
Confidence 678999999999 777766653
No 462
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=33.68 E-value=11 Score=30.52 Aligned_cols=15 Identities=20% Similarity=0.116 Sum_probs=11.9
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|.||+|+|||++.
T Consensus 6 i~i~GptgsGKt~la 20 (322)
T 3exa_A 6 VAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCcCCHHHHH
Confidence 468899999999333
No 463
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=33.65 E-value=12 Score=29.64 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=15.5
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
...|.|+.|+||| ++++.+..
T Consensus 46 ~vll~G~~G~GKT-------~l~~~~~~ 66 (387)
T 2v1u_A 46 NALLYGLTGTGKT-------AVARLVLR 66 (387)
T ss_dssp CEEECBCTTSSHH-------HHHHHHHH
T ss_pred cEEEECCCCCCHH-------HHHHHHHH
Confidence 3568899999999 66655543
No 464
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=33.59 E-value=9.1 Score=29.04 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.7
Q ss_pred hhhhhCCCCCCccchHHH
Q psy860 32 FSALRGIPGVKSGPIIDY 49 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~ 49 (178)
+..+-|++|+|||+....
T Consensus 23 ~i~~~G~~g~GKst~~~~ 40 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHL 40 (223)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 678899999999965544
No 465
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=33.44 E-value=7.6 Score=29.27 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=13.9
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
|..+-|++|+|||+...
T Consensus 7 ~i~~eG~~g~GKst~~~ 23 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCN 23 (216)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67788999999995553
No 466
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=33.24 E-value=15 Score=27.77 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=19.7
Q ss_pred ccccchhhhccHHHHHHHhhhhhCCCCCCccchH
Q psy860 14 PQFNGINEHLTAQEMLECFSALRGIPGVKSGPII 47 (178)
Q Consensus 14 ~~~~~v~~~~~~g~~~~~~~~i~G~~g~gk~~~~ 47 (178)
..+++.-..+.. . ...|.|++|+|||+..
T Consensus 23 ~~lHa~~v~~~g-~----~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 23 RSMHGVLVDIYG-L----GVLITGDSGVGKSETA 51 (205)
T ss_dssp CCEESEEEEETT-E----EEEEECCCTTTTHHHH
T ss_pred eeeeEEEEEECC-E----EEEEECCCCCCHHHHH
Confidence 345665555543 3 5779999999999444
No 467
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=33.21 E-value=11 Score=27.64 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=15.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 16 i~v~G~~~vGKS-------sli~~l~~ 35 (223)
T 3cpj_B 16 IVLIGDSGVGKS-------NLLSRFTK 35 (223)
T ss_dssp EEEESCTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHhc
Confidence 468999999999 66666554
No 468
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=32.81 E-value=13 Score=30.68 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=16.0
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
+..+.|++||||| |+.+.+.
T Consensus 260 lIil~G~pGSGKS-------Tla~~L~ 279 (416)
T 3zvl_A 260 VVVAVGFPGAGKS-------TFIQEHL 279 (416)
T ss_dssp EEEEESCTTSSHH-------HHHHHHT
T ss_pred EEEEECCCCCCHH-------HHHHHHH
Confidence 5678999999999 6666654
No 469
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=32.57 E-value=8.1 Score=27.28 Aligned_cols=19 Identities=11% Similarity=0.094 Sum_probs=15.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| ||+..+.
T Consensus 25 i~v~G~~~~GKs-------sli~~l~ 43 (189)
T 2x77_A 25 VLMLGLDNAGKT-------SILYRLH 43 (189)
T ss_dssp EEEEEETTSSHH-------HHHHHTC
T ss_pred EEEECCCCCCHH-------HHHHHHH
Confidence 568999999999 7777664
No 470
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=32.50 E-value=9.6 Score=27.47 Aligned_cols=20 Identities=15% Similarity=-0.007 Sum_probs=15.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+++|..|+||| ||+..+.+
T Consensus 32 i~vvG~~~vGKS-------sli~~l~~ 51 (201)
T 2hup_A 32 LVLVGDASVGKT-------CVVQRFKT 51 (201)
T ss_dssp EEEEECTTSSHH-------HHHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHhh
Confidence 568999999999 66665543
No 471
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=32.23 E-value=13 Score=28.19 Aligned_cols=12 Identities=25% Similarity=0.296 Sum_probs=10.0
Q ss_pred hhhCCCCCCccc
Q psy860 34 ALRGIPGVKSGP 45 (178)
Q Consensus 34 ~i~G~~g~gk~~ 45 (178)
-|.|++|+|||.
T Consensus 68 Ll~G~~GtGKT~ 79 (272)
T 1d2n_A 68 LLEGPPHSGKTA 79 (272)
T ss_dssp EEECSTTSSHHH
T ss_pred EEECCCCCcHHH
Confidence 367999999993
No 472
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=31.87 E-value=7.2 Score=30.76 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=19.3
Q ss_pred ccccchh-hhccHHHHHHHhhhhhCCCCCCcc
Q psy860 14 PQFNGIN-EHLTAQEMLECFSALRGIPGVKSG 44 (178)
Q Consensus 14 ~~~~~v~-~~~~~g~~~~~~~~i~G~~g~gk~ 44 (178)
+.|+.+- --++.|+ +..|.|++|+|||
T Consensus 85 ~~LD~~l~GGl~~g~----i~~i~G~~gsGKT 112 (322)
T 2i1q_A 85 SELDSVLGGGLESQS----VTEFAGVFGSGKT 112 (322)
T ss_dssp HHHHHHTTSSEETTE----EEEEEESTTSSHH
T ss_pred hhHHHhcCCCccCCe----EEEEECCCCCCHH
Confidence 3444443 2567888 5669999999999
No 473
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=31.79 E-value=10 Score=27.35 Aligned_cols=19 Identities=16% Similarity=-0.062 Sum_probs=15.1
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| +|+..+.
T Consensus 12 i~i~G~~~~GKT-------sli~~l~ 30 (212)
T 2j0v_A 12 CVTVGDGAVGKT-------CMLICYT 30 (212)
T ss_dssp EEEEESTTSSHH-------HHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHh
Confidence 468999999999 6666554
No 474
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=31.44 E-value=10 Score=27.36 Aligned_cols=19 Identities=26% Similarity=0.050 Sum_probs=15.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.+++|..|+||| ||+..+.
T Consensus 33 i~vvG~~~~GKS-------sLi~~l~ 51 (204)
T 4gzl_A 33 CVVVGDGAVGKT-------CLLISYT 51 (204)
T ss_dssp EEEEESTTSSHH-------HHHHHHH
T ss_pred EEEECcCCCCHH-------HHHHHHH
Confidence 679999999999 7775443
No 475
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=31.41 E-value=14 Score=28.27 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=11.7
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
.-+.|++|+|||++.
T Consensus 53 vll~G~~GtGKT~la 67 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIA 67 (310)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999443
No 476
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=31.39 E-value=11 Score=29.31 Aligned_cols=17 Identities=12% Similarity=-0.040 Sum_probs=12.8
Q ss_pred hhCCCCCCccchHHHHHHHhhhhh
Q psy860 35 LRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 35 i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
+.||.|+||| ++.+.+.
T Consensus 41 l~GppGtGKT-------~la~aiA 57 (293)
T 3t15_A 41 IWGGKGQGKS-------FQCELVF 57 (293)
T ss_dssp EEECTTSCHH-------HHHHHHH
T ss_pred EECCCCCCHH-------HHHHHHH
Confidence 5699999999 5555544
No 477
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=30.94 E-value=11 Score=25.79 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=16.7
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhccC
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRFS 61 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~~ 61 (178)
.-|.|+.|+||+ ++.+.+....
T Consensus 30 vll~G~~GtGKt-------~lA~~i~~~~ 51 (143)
T 3co5_A 30 VFLTGEAGSPFE-------TVARYFHKNG 51 (143)
T ss_dssp EEEEEETTCCHH-------HHHGGGCCTT
T ss_pred EEEECCCCccHH-------HHHHHHHHhC
Confidence 448899999999 7777665443
No 478
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=30.59 E-value=15 Score=29.86 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=11.8
Q ss_pred hhhhhCCCCCCcc
Q psy860 32 FSALRGIPGVKSG 44 (178)
Q Consensus 32 ~~~i~G~~g~gk~ 44 (178)
...|.||+|+|||
T Consensus 42 lIvI~GPTgsGKT 54 (339)
T 3a8t_A 42 LLVLMGATGTGKS 54 (339)
T ss_dssp EEEEECSTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 5679999999999
No 479
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=30.18 E-value=15 Score=30.71 Aligned_cols=16 Identities=25% Similarity=0.246 Sum_probs=12.6
Q ss_pred hhhhhCCCCCCccchH
Q psy860 32 FSALRGIPGVKSGPII 47 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~ 47 (178)
..+++|++|+|||+..
T Consensus 101 vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA 116 (432)
T ss_dssp CEEEECCSSSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4668899999999443
No 480
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=30.06 E-value=15 Score=29.57 Aligned_cols=15 Identities=13% Similarity=0.047 Sum_probs=11.9
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|.||+|+|||++.
T Consensus 13 i~i~GptgsGKt~la 27 (316)
T 3foz_A 13 IFLMGPTASGKTALA 27 (316)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 468899999999333
No 481
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=29.84 E-value=14 Score=29.16 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=14.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.-|.|+.|+||| ++.+.+..
T Consensus 48 iLL~GppGtGKT-------~la~ala~ 67 (322)
T 1xwi_A 48 ILLFGPPGTGKS-------YLAKAVAT 67 (322)
T ss_dssp EEEESSSSSCHH-------HHHHHHHH
T ss_pred EEEECCCCccHH-------HHHHHHHH
Confidence 347899999999 66665543
No 482
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=29.83 E-value=11 Score=27.44 Aligned_cols=22 Identities=36% Similarity=0.354 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCCeEEeeCCCC
Q psy860 149 KLSTAMALIGDRDDGFQKLPFS 170 (178)
Q Consensus 149 Rv~IAraL~~~P~~lllDEPt~ 170 (178)
.-.|++.+..+|..-..++|+.
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~ 187 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPAL 187 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCB
T ss_pred HHHHHHHHHhCcccccccCCCC
Confidence 4578899999999999998875
No 483
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=29.82 E-value=13 Score=28.69 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=11.6
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
.-|.|+.|+|||.+.
T Consensus 70 vll~G~~GtGKT~la 84 (309)
T 3syl_A 70 MSFTGNPGTGKTTVA 84 (309)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 348899999999333
No 484
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=29.70 E-value=16 Score=28.86 Aligned_cols=18 Identities=28% Similarity=0.276 Sum_probs=13.8
Q ss_pred hhhCCCCCCccchHHHHHHHhhhhh
Q psy860 34 ALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 34 ~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
-|.|+.|+||| +|+..+.
T Consensus 156 ll~G~~GtGKT-------~La~aia 173 (308)
T 2qgz_A 156 YLYGDMGIGKS-------YLLAAMA 173 (308)
T ss_dssp EEECSTTSSHH-------HHHHHHH
T ss_pred EEECCCCCCHH-------HHHHHHH
Confidence 47899999999 6665544
No 485
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=29.20 E-value=17 Score=30.48 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=11.0
Q ss_pred hhhCCCCCCccchH
Q psy860 34 ALRGIPGVKSGPII 47 (178)
Q Consensus 34 ~i~G~~g~gk~~~~ 47 (178)
-|.|++|+|||.+.
T Consensus 205 LL~G~pG~GKT~la 218 (468)
T 3pxg_A 205 VLIGEPGVGKTAIA 218 (468)
T ss_dssp EEESCTTTTTHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 47899999999333
No 486
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=28.51 E-value=16 Score=29.18 Aligned_cols=12 Identities=17% Similarity=0.271 Sum_probs=9.9
Q ss_pred hCCCCCCccchH
Q psy860 36 RGIPGVKSGPII 47 (178)
Q Consensus 36 ~G~~g~gk~~~~ 47 (178)
.|+.|+|||++.
T Consensus 58 ~G~~G~GKT~L~ 69 (412)
T 1w5s_A 58 IGRVGIGKTTLA 69 (412)
T ss_dssp TTCCSSSHHHHH
T ss_pred cCcCCCCHHHHH
Confidence 899999999433
No 487
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=28.26 E-value=13 Score=30.83 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.4
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.+|+|.+++||| ||+..+.+
T Consensus 6 V~ivG~~nvGKS-------tL~n~l~~ 25 (436)
T 2hjg_A 6 VAIVGRPNVGKS-------TIFNRIAG 25 (436)
T ss_dssp EEEECSTTSSHH-------HHHHHHEE
T ss_pred EEEECCCCCCHH-------HHHHHHhC
Confidence 679999999999 77666655
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=28.03 E-value=16 Score=28.70 Aligned_cols=19 Identities=26% Similarity=0.284 Sum_probs=14.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhh
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAI 58 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~ 58 (178)
.-|.|+.|+||| ++.+.+.
T Consensus 54 vLl~GppGtGKT-------~la~aia 72 (322)
T 3eie_A 54 ILLYGPPGTGKS-------YLAKAVA 72 (322)
T ss_dssp EEEECSSSSCHH-------HHHHHHH
T ss_pred EEEECCCCCcHH-------HHHHHHH
Confidence 457899999999 5655544
No 489
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.84 E-value=17 Score=30.56 Aligned_cols=20 Identities=20% Similarity=0.252 Sum_probs=14.8
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.-+.||.|+||| .+.+.+.+
T Consensus 218 vLLyGPPGTGKT-------llAkAiA~ 237 (434)
T 4b4t_M 218 ALMYGPPGTGKT-------LLARACAA 237 (434)
T ss_dssp EEEESCTTSSHH-------HHHHHHHH
T ss_pred eEEECcCCCCHH-------HHHHHHHH
Confidence 347899999999 66665554
No 490
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=27.76 E-value=17 Score=28.96 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=10.8
Q ss_pred hhhhCCCCCCccc
Q psy860 33 SALRGIPGVKSGP 45 (178)
Q Consensus 33 ~~i~G~~g~gk~~ 45 (178)
..+.|++|+|||+
T Consensus 54 vll~GppGtGKT~ 66 (363)
T 3hws_A 54 ILLIGPTGSGKTL 66 (363)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4578999999993
No 491
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=26.92 E-value=18 Score=28.27 Aligned_cols=12 Identities=17% Similarity=0.263 Sum_probs=10.4
Q ss_pred hhhhCCCCCCcc
Q psy860 33 SALRGIPGVKSG 44 (178)
Q Consensus 33 ~~i~G~~g~gk~ 44 (178)
.-|.|++|+||+
T Consensus 58 vll~G~~GtGKT 69 (338)
T 3pfi_A 58 ILFSGPAGLGKT 69 (338)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 447899999999
No 492
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=26.84 E-value=20 Score=27.67 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.9
Q ss_pred hhhhCCCCCCccchH
Q psy860 33 SALRGIPGVKSGPII 47 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~ 47 (178)
..|.|+.|+||+.+.
T Consensus 41 vll~G~~GtGKT~la 55 (324)
T 1hqc_A 41 LLLFGPPGLGKTTLA 55 (324)
T ss_dssp CEEECCTTCCCHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 458899999999444
No 493
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.32 E-value=18 Score=30.32 Aligned_cols=20 Identities=25% Similarity=0.228 Sum_probs=14.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.-+.||.|+||| .+.+.+.+
T Consensus 218 vLL~GPPGtGKT-------llAkAiA~ 237 (437)
T 4b4t_L 218 VLLYGPPGTGKT-------LLAKAVAA 237 (437)
T ss_dssp EEEESCTTSSHH-------HHHHHHHH
T ss_pred EEEECCCCCcHH-------HHHHHHHH
Confidence 347899999999 66665554
No 494
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=26.32 E-value=23 Score=26.63 Aligned_cols=22 Identities=9% Similarity=-0.046 Sum_probs=15.6
Q ss_pred hhhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 32 FSALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
..-|.|++|+||+ ++.+.+...
T Consensus 31 ~vll~G~~GtGKt-------~la~~i~~~ 52 (265)
T 2bjv_A 31 PVLIIGERGTGKE-------LIASRLHYL 52 (265)
T ss_dssp CEEEECCTTSCHH-------HHHHHHHHT
T ss_pred CEEEECCCCCcHH-------HHHHHHHHh
Confidence 3558899999999 565554433
No 495
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=26.30 E-value=17 Score=26.90 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=13.2
Q ss_pred hhhhhCCCCCCccchHH
Q psy860 32 FSALRGIPGVKSGPIID 48 (178)
Q Consensus 32 ~~~i~G~~g~gk~~~~~ 48 (178)
-..|.|++|+|||+..-
T Consensus 18 gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 18 GVLITGEANIGKSELSL 34 (181)
T ss_dssp EEEEEESSSSSHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 46688999999995443
No 496
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.12 E-value=18 Score=30.22 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=15.2
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
.-+.||.|+||| .+.+.+.+
T Consensus 209 iLL~GPPGtGKT-------~lakAiA~ 228 (428)
T 4b4t_K 209 VLLYGPPGTGKT-------MLVKAVAN 228 (428)
T ss_dssp EEEESCTTTTHH-------HHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHH
Confidence 457899999999 66665554
No 497
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=25.96 E-value=16 Score=28.54 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=16.9
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.+++|.+++||| |++..+.+-
T Consensus 123 v~~vG~~nvGKS-------sliN~l~~~ 143 (282)
T 1puj_A 123 ALIIGIPNVGKS-------TLINRLAKK 143 (282)
T ss_dssp EEEEESTTSSHH-------HHHHHHHTS
T ss_pred EEEEecCCCchH-------HHHHHHhcC
Confidence 578899999999 777776654
No 498
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=25.88 E-value=17 Score=28.81 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=15.6
Q ss_pred hhhhCCCCCCccchHHHHHHHhhhhhcc
Q psy860 33 SALRGIPGVKSGPIIDYWIDLLGSAIRF 60 (178)
Q Consensus 33 ~~i~G~~g~gk~~~~~~~itll~~~~~~ 60 (178)
.-|.|+.|+||| ++.+.+...
T Consensus 73 vLl~GppGtGKT-------~la~~la~~ 93 (368)
T 3uk6_A 73 VLIAGQPGTGKT-------AIAMGMAQA 93 (368)
T ss_dssp EEEEESTTSSHH-------HHHHHHHHH
T ss_pred EEEECCCCCCHH-------HHHHHHHHH
Confidence 457899999999 666655543
No 499
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=25.80 E-value=20 Score=28.73 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=10.8
Q ss_pred hhhhCCCCCCccc
Q psy860 33 SALRGIPGVKSGP 45 (178)
Q Consensus 33 ~~i~G~~g~gk~~ 45 (178)
.-+.|++|+|||+
T Consensus 75 ill~Gp~GtGKT~ 87 (376)
T 1um8_A 75 ILLIGPTGSGKTL 87 (376)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4478999999993
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=25.57 E-value=20 Score=28.75 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=14.0
Q ss_pred hhhCCCCCCccchHHHHHHHhhhhhc
Q psy860 34 ALRGIPGVKSGPIIDYWIDLLGSAIR 59 (178)
Q Consensus 34 ~i~G~~g~gk~~~~~~~itll~~~~~ 59 (178)
-|.|+.|+||| ++.+.+..
T Consensus 121 Ll~GppGtGKT-------~la~aia~ 139 (357)
T 3d8b_A 121 LLFGPPGTGKT-------LIGKCIAS 139 (357)
T ss_dssp EEESSTTSSHH-------HHHHHHHH
T ss_pred EEECCCCCCHH-------HHHHHHHH
Confidence 47899999999 55555443
Done!