RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy860
(178 letters)
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 61.7 bits (150), Expect = 1e-12
Identities = 19/101 (18%), Positives = 44/101 (43%)
Query: 73 TNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLT 132
++ +L I Q + H+T E + ++ P + + + +LL +
Sbjct: 68 RDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE 127
Query: 133 EYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQN 173
E +R + SGG +++++ A A++ + D P S+ +
Sbjct: 128 ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Score = 31.7 bits (72), Expect = 0.030
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 2 HLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
+L I Q + H+T E + ++ P + + + +LL
Sbjct: 72 YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQ 125
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 53.5 bits (128), Expect = 1e-09
Identities = 18/88 (20%), Positives = 32/88 (36%)
Query: 72 MTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL 131
+ + I Y P+ G ++ E L + + +++ ++ GL
Sbjct: 64 KNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 123
Query: 132 TEYRHRVSGRYSGGNKRKLSTAMALIGD 159
E YS G RKL A AL+ +
Sbjct: 124 GEKIKDRVSTYSKGMVRKLLIARALMVN 151
Score = 29.6 bits (66), Expect = 0.18
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 9 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
I Y P+ G ++ E L + + +++ ++ G
Sbjct: 76 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 122
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 50.3 bits (120), Expect = 1e-08
Identities = 18/90 (20%), Positives = 36/90 (40%)
Query: 72 MTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGL 131
+ + I Q + H+T + + LR +P + + +LLGL
Sbjct: 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGL 129
Query: 132 TEYRHRVSGRYSGGNKRKLSTAMALIGDRD 161
TE +R SGG +++++ A++
Sbjct: 130 TELLNRKPRELSGGQRQRVALGRAIVRKPQ 159
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 49.5 bits (118), Expect = 3e-08
Identities = 16/82 (19%), Positives = 29/82 (35%)
Query: 80 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVS 139
+ IG Q + T + L P + + + L+GL +
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP 138
Query: 140 GRYSGGNKRKLSTAMALIGDRD 161
SGG K++++ A AL +
Sbjct: 139 SNLSGGQKQRVAIARALASNPK 160
Score = 24.8 bits (54), Expect = 6.2
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 5 QYLSGIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLG 55
+ IG Q + T + L P + + + L+G
Sbjct: 79 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVG 129
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 46.8 bits (111), Expect = 2e-07
Identities = 22/109 (20%), Positives = 37/109 (33%)
Query: 51 IDLLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSAL 110
+ + +R + N +TN GI P+ I LT E L +
Sbjct: 49 LSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYN 108
Query: 111 RGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGD 159
R + + L E ++ G SGG ++ L+ AL+
Sbjct: 109 RKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSR 157
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 46.5 bits (110), Expect = 3e-07
Identities = 14/77 (18%), Positives = 29/77 (37%)
Query: 85 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSG 144
+G Q + HL+ E + L G ++ ++L L R SG
Sbjct: 74 VGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSG 133
Query: 145 GNKRKLSTAMALIGDRD 161
G +++++ L+ +
Sbjct: 134 GQRQRVAIGRTLVAEPS 150
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 40.2 bits (94), Expect = 4e-05
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Query: 85 IGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRY-- 142
IG+ Q + LTA E +E + + ++ L + E R +
Sbjct: 85 IGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144
Query: 143 --SGGNKRKLSTAMALIGD 159
SGG +++++ A AL +
Sbjct: 145 QLSGGQQQRVAIARALANN 163
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 39.4 bits (92), Expect = 7e-05
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 84 GIGYCPQFNGINEHLTAQEM-LECFSALRGIPGVKSGPIIDYWIDLLGLTE-YRHRVSGR 141
+ Q + H+T E +E + G+ + ++ +G+ E + +
Sbjct: 90 RLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 149
Query: 142 YSGGNKRKLSTAMALIGD 159
SGG ++++S A AL +
Sbjct: 150 LSGGQQQRVSIARALAME 167
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 33.9 bits (77), Expect = 0.006
Identities = 17/90 (18%), Positives = 35/90 (38%)
Query: 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYS 143
IG Q + +LTA E + + + ++ +L + + S
Sbjct: 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELS 142
Query: 144 GGNKRKLSTAMALIGDRDDGFQKLPFSSQN 173
G +++++ A AL+ D PFS+ +
Sbjct: 143 GAQQQRVALARALVKDPSLLLLDEPFSNLD 172
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 32.6 bits (74), Expect = 0.016
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 84 GIGYCPQFNGINEHLTAQEMLECFSALRGIPGVKSGPIIDYWIDLLGLTEYRHRVSGRYS 143
Y Q L +++ L L + R + + S
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTNQLS 127
Query: 144 GGNKRKLSTAMALI 157
GG +++ A ++
Sbjct: 128 GGEWQRVRLAAVVL 141
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 32.7 bits (74), Expect = 0.016
Identities = 21/121 (17%), Positives = 43/121 (35%), Gaps = 3/121 (2%)
Query: 53 LLGSAIRFSPFQAAQNSLLMTNIMHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRG 112
L F + + L ++ L I + Q + H+ ++ LE ++
Sbjct: 42 FLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK 101
Query: 113 IPGVKSGPIIDYWIDLLGLTEYRHRVSGRYSGGNKRKLSTAMALIGDRDDGFQKLPFSSQ 172
I K + L + R SGG +++++ A AL+ + P S+
Sbjct: 102 IKDPK---RVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 173 N 173
+
Sbjct: 159 D 159
>d2pkgc1 g.92.1.1 (C:91-170) Small t antigen, ST-AG {Simian virus 40
[TaxId: 10633]}
Length = 80
Score = 23.7 bits (51), Expect = 6.7
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 105 ECFSALRGIPGVKSGPIIDYWIDLLGLTEYR 135
+CF G+ + W D++G T YR
Sbjct: 52 DCFRMWFGLD--LCEGTLLLWCDIIGQTTYR 80
>d2dpwa1 c.68.1.19 (A:1-231) Uncharacterized protein TTHA0179
{Thermus thermophilus [TaxId: 274]}
Length = 231
Score = 24.8 bits (53), Expect = 7.0
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 1 MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGI-------PGVKSGPIIDYWIDL 53
+G+ + L+ E+ + G+ P + G +D DL
Sbjct: 171 KRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDL 230
Query: 54 L 54
+
Sbjct: 231 V 231
Score = 24.8 bits (53), Expect = 7.0
Identities = 9/61 (14%), Positives = 19/61 (31%), Gaps = 7/61 (11%)
Query: 76 MHLFQYLSGIGYCPQFNGINEHLTAQEMLECFSALRGI-------PGVKSGPIIDYWIDL 128
+G+ + L+ E+ + G+ P + G +D DL
Sbjct: 171 KRPLALARLVGWDVLLKLLLGRLSLAEVEARAQRILGVEARALVTPYPEVGVDVDREEDL 230
Query: 129 L 129
+
Sbjct: 231 V 231
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.141 0.440
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 701,562
Number of extensions: 31648
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 19
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)