BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8602
(140 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|C Chain C, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|E Chain E, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|G Chain G, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
Length = 355
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
Y+L ++ HSG ++ GHYT W + +D+++ PV V +SE Y+L Y+
Sbjct: 294 YQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 348
>pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|C Chain C, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 373
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
Y+L ++ HSG ++ GHYT W + +D+++ PV V +SE Y+L Y+
Sbjct: 313 YQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 367
>pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|E Chain E, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 370
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
Y+L ++ HSG ++ GHYT W + +D+++ PV V +SE Y+L Y+
Sbjct: 307 YQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQ 361
>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex
Length = 374
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
Y L +V HSG + GHYT Y W +D+ + P+ + V S+AY+L YE
Sbjct: 310 YNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 366
>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With
Ubiquitin
Length = 348
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
Y L +V HSG + GHYT Y W +D+ + P+ + V S+AY+L YE
Sbjct: 284 YNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 340
>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin
Length = 359
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
Y L +V HSG + GHYT Y W +D+ + P+ + V S+AY+L YE
Sbjct: 284 YNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 340
>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
pdb|3V6E|A Chain A, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 367
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
Y L +V HSG + GHYT Y W +D+ + P+ + V S+AY+L YE
Sbjct: 303 YNLYAVSNHSGTTMG-GHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYE 359
>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module
Length = 471
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 59 DYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYIS-QHKRWFLCDDTKI 117
+YCS E + + + D YEL ++ H G ++ GHY + +WF +D+ +
Sbjct: 390 NYCSTKEKDKHSE-NGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMV 447
Query: 118 KPVGITDVLNSEAYMLVY 135
+ +VL +AY+L Y
Sbjct: 448 SSISQEEVLKEQAYLLFY 465
>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FIP|E Chain E, Structure Of The Saga Ubp8(S144n)SGF11(1-72,
Delta-Znf)SUS1SGF73 Dub Module
pdb|4FK5|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11SUS1SGF73 DUB MODULE
Length = 476
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 59 DYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYIS-QHKRWFLCDDTKI 117
+YCS E + + + D YEL ++ H G ++ GHY + +WF +D+ +
Sbjct: 395 NYCSTKEKDKHSE-NGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMV 452
Query: 118 KPVGITDVLNSEAYMLVY 135
+ +VL +AY+L Y
Sbjct: 453 SSISQEEVLKEQAYLLFY 470
>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
pdb|3MHS|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE BOUND
Ubiquitin Aldehyde
pdb|4FJC|A Chain A, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
pdb|4FJC|E Chain E, Structure Of The Saga Ubp8SGF11(1-72, Delta-Znf)SUS1SGF73
DUB Module
Length = 476
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 59 DYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYIS-QHKRWFLCDDTKI 117
+YCS E + + + D YEL ++ H G ++ GHY + +WF +D+ +
Sbjct: 395 NYCSTKEKDKHSE-NGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMV 452
Query: 118 KPVGITDVLNSEAYMLVY 135
+ +VL +AY+L Y
Sbjct: 453 SSISQEEVLKEQAYLLFY 470
>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|B Chain B, Covalent Ubiquitin-Usp5 Complex
Length = 854
Score = 37.4 bits (85), Expect = 0.003, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 51 IDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWF 110
+D+++ RS S E V P ++ +Y+L + I H G + GHY +I + RW
Sbjct: 768 MDISEGRSAADSISESVPVGP-KVRDGPGKYQLFAFISHMGTSTMCGHYVCHIKKEGRWV 826
Query: 111 LCDDTKI 117
+ +D K+
Sbjct: 827 IYNDQKV 833
>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|B Chain B, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|C Chain C, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|D Chain D, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|E Chain E, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
pdb|2Y6E|F Chain F, Ubiquitin Specific Protease 4 Is Inhibited By Its
Ubiquitin- Like Domain
Length = 367
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQ--HKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138
Y+L +V H G + VGHYT Y + +W+ DD+ + ++ AY+L Y+++
Sbjct: 300 YDLIAVSNHYGA-MGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRR 358
>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|B Chain B, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYN|C Chain C, Structure Of Usp14, A Proteasome-Associated
Deubiquitinating Enzyme
pdb|2AYO|A Chain A, Structure Of Usp14 Bound To Ubquitin Aldehyde
Length = 404
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSE-------AYM 132
Y+L +V+ H G + GHY +++ + + W DD K+ V D+L AY+
Sbjct: 328 YDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYV 387
Query: 133 LVY 135
L+Y
Sbjct: 388 LLY 390
>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin
Carboxyl-terminal Hydrolase 8
Length = 396
Score = 34.3 bits (77), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 80 RYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSEAYMLVY 135
+Y L SV H G +D GHYT Y + +RWF DD ++ + ++ V +S AY+L Y
Sbjct: 336 KYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 392
>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 396
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 80 RYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSEAYMLVY 135
+Y L SV H G +D GHYT Y + +RWF DD ++ + ++ V +S AY+L Y
Sbjct: 336 KYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFY 392
>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase
6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A
Resolution
Length = 415
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYIS---QHKRWFLCDDTKIKPV 120
Y L VI H G N + GHY +I +W+ +D K+ V
Sbjct: 346 YNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVV 388
>pdb|1N4C|A Chain A, Nmr Structure Of The J-Domain And Clathrin Substrate
Binding Domain Of Bovine Auxilin
Length = 182
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 110 FLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
+TK KPVG+ D++ E VY K VL
Sbjct: 113 LWAGETKWKPVGMADLVTPEQVKKVYRKAVL 143
>pdb|1XI5|J Chain J, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|K Chain K, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|L Chain L, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|M Chain M, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|N Chain N, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|O Chain O, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|P Chain P, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|Q Chain Q, Clathrin D6 Coat With Auxilin J-Domain
pdb|1XI5|R Chain R, Clathrin D6 Coat With Auxilin J-Domain
Length = 114
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 110 FLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
+TK KPVG+ D++ E VY K VL
Sbjct: 45 LWAGETKWKPVGMADLVTPEQVKKVYRKAVL 75
>pdb|2QWN|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
Length = 94
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 110 FLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
+TK KPVG+ D++ E VY K VL
Sbjct: 30 LWAGETKWKPVGMADLVTPEQVKKVYRKAVL 60
>pdb|2QWO|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|B Chain B, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 92
Score = 29.6 bits (65), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 110 FLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
+TK KPVG+ D++ E VY K VL
Sbjct: 29 LWAGETKWKPVGMADLVTPEQVKKVYRKAVL 59
>pdb|1NZ6|A Chain A, Crystal Structure Of Auxilin J-Domain
pdb|1NZ6|B Chain B, Crystal Structure Of Auxilin J-Domain
Length = 101
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 110 FLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140
+TK KPVG D++ E VY K VL
Sbjct: 32 LWAGETKWKPVGXADLVTPEQVKKVYRKAVL 62
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect
pdb|3JVZ|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 7 AFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNG--NVEPIDLTKYRSDYCSED 64
A H L+ FF+ +K L + L +E++ +E+YN + D T+ +C ++
Sbjct: 130 AVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTELDLMFCIDE 189
Query: 65 EDEGVAPYELNLEDNRYELCSVIKHSGLNIDV---GHYTTYISQHKRWFLCDDTKIKPVG 121
E+ G Y+++L+ N E+ ++ ID+ + + + FL T++ P+
Sbjct: 190 ENFGQT-YQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPID 248
Query: 122 ITDVLN 127
+ + +
Sbjct: 249 LIKIFD 254
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect
pdb|3JW0|D Chain D, E2~ubiquitin-Hect
Length = 385
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Query: 7 AFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNG--NVEPIDLTKYRSDYCSED 64
A H L+ FF+ +K L + L +E++ +E+YN + D T+ +C ++
Sbjct: 130 AVFHGKLLDGFFIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTELDLMFCIDE 189
Query: 65 EDEGVAPYELNLEDNRYELCSVIKHSGLNIDV---GHYTTYISQHKRWFLCDDTKIKPVG 121
E+ G Y+++L+ N E+ ++ ID+ + + + FL T++ P+
Sbjct: 190 ENFGQT-YQVDLKPNGSEIMVTNENKREYIDLVIQWRFVNRVQKQMNAFLEGFTELLPID 248
Query: 122 ITDVLN 127
+ + +
Sbjct: 249 LIKIFD 254
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase
Length = 392
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 7 AFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNG--NVEPIDLTKYRSDYCSED 64
A H L+ FF+ +K L + L E++ +E+YN + D T+ +C ++
Sbjct: 145 AVFHGKLLDGFFIRPFYKXXLGKQITLNDXESVDSEYYNSLKWILENDPTELDLXFCIDE 204
Query: 65 EDEGVAPYELNLEDNRYELCSVIKHSGLNIDV---GHYTTYISQHKRWFLCDDTKIKPVG 121
E+ G Y+++L+ N E+ ++ ID+ + + + FL T++ P+
Sbjct: 205 ENFGQT-YQVDLKPNGSEIXVTNENKREYIDLVIQWRFVNRVQKQXNAFLEGFTELLPID 263
Query: 122 ITDVLNSEAYMLV 134
+ + + L+
Sbjct: 264 LIKIFDENELELL 276
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 25.8 bits (55), Expect = 8.5, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 45 NGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYEL 83
NG ++ D+ Y + C+ D+ E V Y L +N Y++
Sbjct: 858 NGKIKAADIQLYINGGCTPDDSELVIEYALLKLENAYKI 896
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.140 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,410,060
Number of Sequences: 62578
Number of extensions: 182225
Number of successful extensions: 325
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 28
length of query: 140
length of database: 14,973,337
effective HSP length: 89
effective length of query: 51
effective length of database: 9,403,895
effective search space: 479598645
effective search space used: 479598645
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)