Query psy8602
Match_columns 140
No_of_seqs 181 out of 1743
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:00:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8602.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8602hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1865|consensus 100.0 5.4E-31 1.2E-35 207.0 9.2 130 9-138 267-410 (545)
2 COG5560 UBP12 Ubiquitin C-term 100.0 5.5E-29 1.2E-33 197.8 7.2 134 5-139 672-823 (823)
3 cd02667 Peptidase_C19K A subfa 100.0 1.4E-28 3.1E-33 184.5 8.0 128 8-136 111-279 (279)
4 cd02663 Peptidase_C19G A subfa 99.9 3.8E-28 8.1E-33 183.8 7.0 128 9-136 148-300 (300)
5 cd02664 Peptidase_C19H A subfa 99.9 1E-27 2.2E-32 183.4 7.1 125 12-136 138-327 (327)
6 cd02662 Peptidase_C19F A subfa 99.9 2.7E-27 5.9E-32 174.2 7.3 120 9-136 97-240 (240)
7 cd02671 Peptidase_C19O A subfa 99.9 1.3E-26 2.8E-31 177.7 7.4 124 9-136 181-332 (332)
8 cd02673 Peptidase_C19Q A subfa 99.9 3.6E-26 7.9E-31 168.7 9.0 107 28-136 126-245 (245)
9 cd02658 Peptidase_C19B A subfa 99.9 2.1E-26 4.5E-31 174.7 7.7 126 7-136 177-311 (311)
10 cd02668 Peptidase_C19L A subfa 99.9 6E-26 1.3E-30 173.4 8.3 127 10-136 158-324 (324)
11 cd02665 Peptidase_C19I A subfa 99.9 7.1E-26 1.5E-30 165.1 8.2 125 9-136 94-228 (228)
12 cd02659 peptidase_C19C A subfa 99.9 1.4E-25 3.1E-30 171.4 8.2 129 10-139 153-333 (334)
13 cd02660 Peptidase_C19D A subfa 99.9 1.9E-25 4.1E-30 170.4 8.6 127 8-136 176-328 (328)
14 COG5533 UBP5 Ubiquitin C-termi 99.9 2E-25 4.3E-30 165.6 7.6 128 10-139 266-415 (415)
15 cd02674 Peptidase_C19R A subfa 99.9 4.3E-25 9.4E-30 160.6 8.3 127 9-136 85-230 (230)
16 cd02661 Peptidase_C19E A subfa 99.9 4.7E-25 1E-29 166.1 7.3 126 11-136 165-304 (304)
17 cd02657 Peptidase_C19A A subfa 99.9 6.2E-25 1.3E-29 166.2 7.2 119 11-136 163-305 (305)
18 KOG1870|consensus 99.9 5.4E-25 1.2E-29 185.0 6.6 130 9-139 697-842 (842)
19 cd02670 Peptidase_C19N A subfa 99.9 2.1E-24 4.5E-29 158.6 8.4 94 43-136 96-241 (241)
20 cd02669 Peptidase_C19M A subfa 99.9 2.5E-24 5.4E-29 170.6 7.4 98 38-136 325-440 (440)
21 KOG1868|consensus 99.9 3.3E-24 7.1E-29 174.3 5.6 129 10-139 499-647 (653)
22 KOG1866|consensus 99.9 1.1E-24 2.4E-29 175.6 0.6 137 2-139 240-435 (944)
23 cd02672 Peptidase_C19P A subfa 99.9 3.9E-23 8.4E-28 154.4 6.3 120 8-136 117-268 (268)
24 KOG1867|consensus 99.9 3.1E-22 6.6E-27 159.5 6.5 128 10-138 336-484 (492)
25 PF00443 UCH: Ubiquitin carbox 99.9 3.5E-22 7.7E-27 146.4 5.9 92 43-135 156-269 (269)
26 KOG1873|consensus 99.8 3.1E-23 6.7E-28 167.4 -2.6 128 10-138 680-877 (877)
27 cd02257 Peptidase_C19 Peptidas 99.8 5.4E-21 1.2E-25 138.3 8.5 124 10-136 101-255 (255)
28 COG5077 Ubiquitin carboxyl-ter 99.8 5.4E-20 1.2E-24 149.3 4.4 129 11-140 341-513 (1089)
29 KOG1864|consensus 99.8 6.4E-19 1.4E-23 142.8 8.3 132 6-137 419-571 (587)
30 KOG4598|consensus 99.8 5.2E-20 1.1E-24 148.5 0.1 128 11-139 217-442 (1203)
31 cd02666 Peptidase_C19J A subfa 99.6 4.1E-15 8.8E-20 114.7 7.3 59 77-136 277-343 (343)
32 KOG0944|consensus 99.4 4.7E-13 1E-17 108.1 7.2 61 76-138 702-762 (763)
33 KOG1872|consensus 99.3 3.5E-12 7.5E-17 99.7 4.4 63 78-140 401-471 (473)
34 KOG1863|consensus 99.3 3.8E-12 8.3E-17 110.3 4.4 128 10-139 320-486 (1093)
35 COG5207 UBP14 Isopeptidase T [ 99.2 1E-11 2.2E-16 98.3 4.9 59 79-137 686-748 (749)
36 PF13423 UCH_1: Ubiquitin carb 99.2 3.7E-11 8E-16 90.9 7.4 89 29-117 181-295 (295)
37 KOG1871|consensus 99.2 2.5E-11 5.4E-16 93.1 5.9 97 43-139 300-420 (420)
38 KOG2026|consensus 98.4 2.2E-08 4.8E-13 77.0 -1.8 98 38-138 327-441 (442)
39 KOG1275|consensus 98.2 5.2E-06 1.1E-10 70.1 7.0 57 79-135 789-860 (1118)
40 KOG1865|consensus 97.8 8E-06 1.7E-10 65.7 2.0 44 1-44 120-165 (545)
41 cd02660 Peptidase_C19D A subfa 96.8 0.00076 1.7E-08 51.5 2.2 43 1-43 12-58 (328)
42 cd02669 Peptidase_C19M A subfa 96.7 0.00074 1.6E-08 54.1 1.7 47 1-47 131-179 (440)
43 PF15499 Peptidase_C98: Ubiqui 96.4 0.016 3.5E-07 43.0 6.7 42 72-116 210-252 (275)
44 cd02661 Peptidase_C19E A subfa 96.1 0.0035 7.6E-08 47.0 1.9 43 1-43 13-57 (304)
45 COG5560 UBP12 Ubiquitin C-term 96.0 0.003 6.5E-08 52.2 1.4 27 1-27 277-303 (823)
46 cd02658 Peptidase_C19B A subfa 95.9 0.0052 1.1E-07 46.6 2.3 46 1-46 11-60 (311)
47 cd02668 Peptidase_C19L A subfa 95.7 0.0055 1.2E-07 47.0 1.8 56 1-56 11-77 (324)
48 cd02657 Peptidase_C19A A subfa 95.1 0.011 2.4E-07 44.7 1.6 46 1-46 11-59 (305)
49 PF00443 UCH: Ubiquitin carbox 94.6 0.019 4.1E-07 41.6 1.7 56 1-56 13-77 (269)
50 cd02659 peptidase_C19C A subfa 94.4 0.037 8.1E-07 42.3 2.9 46 1-46 14-60 (334)
51 PF05408 Peptidase_C28: Foot-a 94.4 0.052 1.1E-06 38.4 3.3 27 96-122 138-164 (193)
52 cd02667 Peptidase_C19K A subfa 94.4 0.017 3.7E-07 43.3 0.9 20 1-20 11-30 (279)
53 cd02664 Peptidase_C19H A subfa 93.7 0.046 9.9E-07 42.0 2.2 43 1-43 11-53 (327)
54 cd02662 Peptidase_C19F A subfa 92.0 0.068 1.5E-06 39.2 0.9 22 1-22 11-32 (240)
55 KOG1867|consensus 89.9 0.16 3.5E-06 41.5 1.3 47 1-47 173-222 (492)
56 cd02666 Peptidase_C19J A subfa 89.6 0.17 3.6E-06 39.5 1.2 22 1-22 13-34 (343)
57 cd02671 Peptidase_C19O A subfa 86.6 0.33 7.2E-06 37.6 1.1 19 1-19 36-54 (332)
58 COG5533 UBP5 Ubiquitin C-termi 85.6 0.36 7.8E-06 37.2 0.8 24 1-24 83-106 (415)
59 KOG2026|consensus 77.8 1.1 2.4E-05 35.4 1.1 23 1-23 146-168 (442)
60 PF01473 CW_binding_1: Putativ 77.2 3.1 6.8E-05 17.9 2.0 14 102-115 3-16 (19)
61 cd02672 Peptidase_C19P A subfa 75.8 1.9 4.1E-05 32.4 1.8 39 1-40 27-65 (268)
62 PF02099 Josephin: Josephin; 71.7 7 0.00015 27.1 3.7 34 82-120 98-131 (157)
63 KOG1868|consensus 67.0 1.5 3.2E-05 37.2 -0.5 23 1-23 313-335 (653)
64 PF08715 Viral_protease: Papai 66.1 10 0.00022 29.4 3.9 32 88-123 266-297 (320)
65 KOG1870|consensus 65.5 2.6 5.6E-05 36.9 0.6 25 1-25 258-282 (842)
66 KOG1873|consensus 62.7 3.7 7.9E-05 35.3 1.0 24 1-24 217-240 (877)
67 PF08770 SoxZ: Sulphur oxidati 59.4 43 0.00094 21.3 5.7 55 79-138 13-76 (100)
68 PF13423 UCH_1: Ubiquitin carb 57.0 7.5 0.00016 29.3 1.8 42 1-44 12-53 (295)
69 PF01088 Peptidase_C12: Ubiqui 40.0 26 0.00057 25.4 2.3 28 97-124 166-193 (214)
70 KOG0944|consensus 38.5 15 0.00032 31.4 0.9 47 1-47 319-369 (763)
71 PF00770 Peptidase_C5: Adenovi 35.1 72 0.0016 22.6 3.7 31 84-114 21-53 (183)
72 KOG3556|consensus 35.1 6.6 0.00014 32.5 -1.6 33 77-114 624-659 (724)
73 COG5207 UBP14 Isopeptidase T [ 34.5 15 0.00033 30.5 0.4 44 12-59 465-512 (749)
74 PF14509 GH97_C: Glycosyl-hydr 33.5 26 0.00057 22.4 1.3 25 96-120 13-42 (103)
75 TIGR01067 rplN_bact ribosomal 32.9 1.2E+02 0.0026 20.1 4.4 33 83-123 58-90 (122)
76 KOG1887|consensus 29.3 27 0.0006 30.4 1.0 48 76-126 722-772 (806)
77 PTZ00204 hypothetical protein; 29.2 48 0.001 21.0 1.9 38 84-125 36-76 (120)
78 COG0093 RplN Ribosomal protein 28.6 87 0.0019 20.7 3.0 34 82-123 57-90 (122)
79 smart00460 TGc Transglutaminas 28.5 91 0.002 17.3 3.0 20 95-114 47-66 (68)
80 cd00524 SORL Superoxide reduct 28.4 1.4E+02 0.0031 18.0 7.0 46 85-137 18-66 (86)
81 PRK05483 rplN 50S ribosomal pr 28.1 1.7E+02 0.0037 19.3 4.5 34 82-123 57-90 (122)
82 cd03172 SORL_classII Superoxid 27.9 1.7E+02 0.0036 18.6 7.0 46 86-136 26-77 (104)
83 PHA02131 hypothetical protein 26.8 73 0.0016 18.1 2.2 25 95-122 21-45 (70)
84 PHA01365 hypothetical protein 25.8 70 0.0015 19.6 2.1 24 111-134 15-40 (91)
85 PF12252 SidE: Dot/Icm substra 24.9 89 0.0019 28.6 3.3 34 77-114 47-81 (1439)
86 cd05896 Ig1_IL1RAPL-1_like Fir 24.7 56 0.0012 21.0 1.7 14 94-107 80-93 (104)
87 PRK09750 hypothetical protein; 24.5 1.4E+02 0.0031 17.2 3.1 30 79-120 2-31 (64)
88 KOG3646|consensus 23.9 1.1E+02 0.0024 25.1 3.5 40 78-118 124-166 (486)
89 cd05860 Ig4_SCFR Fourth immuno 23.6 2.1E+02 0.0045 18.3 4.8 29 81-110 63-91 (101)
90 cd05751 Ig1_LILRB1_like First 21.9 67 0.0014 19.4 1.6 16 94-109 63-79 (91)
91 cd01269 PLX Pollux (PLX) Phosp 21.3 1.4E+02 0.0031 20.0 3.0 28 78-105 80-107 (129)
92 PF08053 Tna_leader: Tryptopha 21.3 52 0.0011 14.8 0.7 11 108-118 11-21 (24)
93 PTZ00054 60S ribosomal protein 21.2 1.3E+02 0.0029 20.4 3.0 22 102-123 87-108 (139)
No 1
>KOG1865|consensus
Probab=99.97 E-value=5.4e-31 Score=207.01 Aligned_cols=130 Identities=25% Similarity=0.424 Sum_probs=115.2
Q ss_pred cCcHHHHHHhhcccccCccccCcccchhh----hhhhhhhcCCccccccccccc-------cCCCCCCCCCccccccC--
Q psy8602 9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIE----ALFNEFYNGNVEPIDLTKYRS-------DYCSEDEDEGVAPYELN-- 75 (140)
Q Consensus 9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~----~~f~~~~~~~~~~l~l~rf~~-------~~~~~~~~~~~~~~~~~-- 75 (140)
+....|..|...|++..++.+.|..|+.. +++.....|+|++|+||||.. +....++.+|+.||+.+
T Consensus 267 sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~~~~gKI~K~I~fPE~LDl~PyMS~~~ 346 (545)
T KOG1865|consen 267 SLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSNGTGGKISKPVSFPETLDLQPYMSQPN 346 (545)
T ss_pred hHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeeehhccCcccccccccCCcccccccccccCCC
Confidence 44577899999999988888999999984 346666889999999999954 34567888999999985
Q ss_pred CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602 76 LEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138 (140)
Q Consensus 76 ~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~ 138 (140)
..+..|.|||||+|.|.+..+|||++|||..+ .||.+||+.|+.++.+.|++.+||||||.|+
T Consensus 347 e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 347 EGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIESVLSQQAYILFYARK 410 (545)
T ss_pred CCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccceecccceEEEEEee
Confidence 46789999999999999999999999999998 9999999999999999999999999999986
No 2
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=5.5e-29 Score=197.82 Aligned_cols=134 Identities=25% Similarity=0.389 Sum_probs=115.7
Q ss_pred hhhhcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCCCCCCccccccCC----
Q psy8602 5 LQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNL---- 76 (140)
Q Consensus 5 lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~~~~~~~~~~~~~---- 76 (140)
...++...||..|..+|.+.-+.-|+|+.|+..+ ++..+..|.+++||||||......++|+.++..|++..
T Consensus 672 ~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs 751 (823)
T COG5560 672 ERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLS 751 (823)
T ss_pred cCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhcccccccccc
Confidence 3567778889999888888766669999999743 45556788899999999998888888888888776542
Q ss_pred --------CCCcEEEEEEEEeecCCCCCCeEEEEEeC--CCcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602 77 --------EDNRYELCSVIKHSGLNIDVGHYTTYISQ--HKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 77 --------~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~--~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~ 139 (140)
+...|+|+||=+|.| .+++||||||+|+ +++||+|||++|+++.+++...++||+|||+|++
T Consensus 752 ~~~~~~~~p~liydlyavDNHyg-glsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 752 GVEYMVDDPRLIYDLYAVDNHYG-GLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred ceEEeecCcceEEEeeecccccc-ccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEecC
Confidence 347899999999999 9999999999999 4599999999999999999999999999999974
No 3
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=1.4e-28 Score=184.47 Aligned_cols=128 Identities=27% Similarity=0.420 Sum_probs=102.9
Q ss_pred hcCcHHHHHHhhcccccCccccCcccchhh-hhhhhhhcCCccccccccccccCC----------CCCCCCCccccccC-
Q psy8602 8 FSHVPLIRNFFLSTIHKCKLDQYCFLCKIE-ALFNEFYNGNVEPIDLTKYRSDYC----------SEDEDEGVAPYELN- 75 (140)
Q Consensus 8 l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~-~~f~~~~~~~~~~l~l~rf~~~~~----------~~~~~~~~~~~~~~- 75 (140)
.+...+|..|+..+.+..++.|.|..|+.. +.......|++++|+|+||..+.. ..++.+++.++...
T Consensus 111 ~sL~~~L~~~~~~E~l~~~~~~~C~~C~~a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~ 190 (279)
T cd02667 111 CSIESCLKQFTEVEILEGNNKFACENCTKAKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAPFCDPK 190 (279)
T ss_pred CCHHHHHHhhcCeeEecCCCcccCCccCceeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhhccCcc
Confidence 345567888888888877777999999863 334445678899999999976642 22345566666543
Q ss_pred ------CCCCcEEEEEEEEeecCCCCCCeEEEEEeC-----------------------CCcEEEEcCCeeEEecccccc
Q psy8602 76 ------LEDNRYELCSVIKHSGLNIDVGHYTTYISQ-----------------------HKRWFLCDDTKIKPVGITDVL 126 (140)
Q Consensus 76 ------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-----------------------~~~W~~~~D~~v~~~~~~~v~ 126 (140)
..+..|+|+|||+|.| +.++|||+||+|. .+.||.|||+.|++++.+++.
T Consensus 191 ~~~~~~~~~~~Y~L~~vi~H~G-~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~ 269 (279)
T cd02667 191 CNSSEDKSSVLYRLYGVVEHSG-TMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVL 269 (279)
T ss_pred ccccccCCCceEEEEEEEEEeC-CCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCHHHhc
Confidence 2467999999999999 6699999999998 349999999999999999999
Q ss_pred CCCcEEEEEE
Q psy8602 127 NSEAYMLVYE 136 (140)
Q Consensus 127 ~~~aYiLfY~ 136 (140)
+.+||||||+
T Consensus 270 ~~~aYiLfYe 279 (279)
T cd02667 270 KSEAYLLFYE 279 (279)
T ss_pred cCCcEEEEeC
Confidence 9999999995
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=3.8e-28 Score=183.81 Aligned_cols=128 Identities=22% Similarity=0.305 Sum_probs=98.3
Q ss_pred cCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCC--CCCCC---------Cccccc
Q psy8602 9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCS--EDEDE---------GVAPYE 73 (140)
Q Consensus 9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~--~~~~~---------~~~~~~ 73 (140)
+...+|..|+..+....++.|.|+.|.... .......|++++|+|+||..+... ..|.. ++.++.
T Consensus 148 sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~ 227 (300)
T cd02663 148 SITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTT 227 (300)
T ss_pred CHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccc
Confidence 445678888888888777779999998633 233446788999999999865432 22222 222221
Q ss_pred --cCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecccccc--------CCCcEEEEEE
Q psy8602 74 --LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVL--------NSEAYMLVYE 136 (140)
Q Consensus 74 --~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~--------~~~aYiLfY~ 136 (140)
...++..|+|+|||+|.|.++++|||+|++|..+.|++|||+.|++++.++|. +.+||||||+
T Consensus 228 ~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 228 DDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred cccCCCCeEEEEEEEEEEecCCCCCCceEEEEECCCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 11245799999999999955899999999999779999999999999999886 5789999995
No 5
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=1e-27 Score=183.45 Aligned_cols=125 Identities=23% Similarity=0.373 Sum_probs=93.6
Q ss_pred HHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCC-----------CCCCCCcccccc--
Q psy8602 12 PLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCS-----------EDEDEGVAPYEL-- 74 (140)
Q Consensus 12 p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~-----------~~~~~~~~~~~~-- 74 (140)
.+|..|+..+....++.|.|+.|+... .......|++++|+|+||.++... .+..+++.++..
T Consensus 138 ~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~ 217 (327)
T cd02664 138 DLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESK 217 (327)
T ss_pred HHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccccc
Confidence 355556666666666679999997643 233446788999999999765422 122333433321
Q ss_pred -------------------CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC----------------------CcEEEEc
Q psy8602 75 -------------------NLEDNRYELCSVIKHSGLNIDVGHYTTYISQH----------------------KRWFLCD 113 (140)
Q Consensus 75 -------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~----------------------~~W~~~~ 113 (140)
...+..|+|+|||+|.|.++++|||+||+|.. +.||.||
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fn 297 (327)
T cd02664 218 SSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFN 297 (327)
T ss_pred ccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEe
Confidence 12357899999999999668999999999974 4899999
Q ss_pred CCeeEEeccccccC-------CCcEEEEEE
Q psy8602 114 DTKIKPVGITDVLN-------SEAYMLVYE 136 (140)
Q Consensus 114 D~~v~~~~~~~v~~-------~~aYiLfY~ 136 (140)
|+.|++++.++|.+ .+||||||+
T Consensus 298 D~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 298 DSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred CCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 99999999999986 799999995
No 6
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=2.7e-27 Score=174.18 Aligned_cols=120 Identities=25% Similarity=0.373 Sum_probs=96.2
Q ss_pred cCcHHHHHHhhcccccCccccCcccchhhhhhhhhhcCCccccccccccccC-CCCCCCCCccccccCCCCCcEEEEEEE
Q psy8602 9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDY-CSEDEDEGVAPYELNLEDNRYELCSVI 87 (140)
Q Consensus 9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~~~~~~l~l~rf~~~~-~~~~~~~~~~~~~~~~~~~~Y~L~~vi 87 (140)
+...+|..|+..+... .+.|+.| .......|++++|+|+||..+. ....|..+...|+...++..|+|+|||
T Consensus 97 sl~~~L~~~~~~E~l~---~~~C~~C----~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l~~~~Y~L~avi 169 (240)
T cd02662 97 TLEHCLDDFLSTEIID---DYKCDRC----QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERLPKVLYRLRAVV 169 (240)
T ss_pred CHHHHHHHhcCccccc---CcCCCCC----eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCccCCceEEEEEEE
Confidence 3446677777777663 3789999 3334567889999999998765 344455555555554578899999999
Q ss_pred EeecCCCCCCeEEEEEeCC----------------------CcEEEEcCCeeEEeccccc-cCCCcEEEEEE
Q psy8602 88 KHSGLNIDVGHYTTYISQH----------------------KRWFLCDDTKIKPVGITDV-LNSEAYMLVYE 136 (140)
Q Consensus 88 ~H~G~~~~~GHY~~~~~~~----------------------~~W~~~~D~~v~~~~~~~v-~~~~aYiLfY~ 136 (140)
+|.| +.++|||+|++|.+ +.||+|||+.|+++++++| .+.+||||||+
T Consensus 170 ~H~G-~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 170 VHYG-SHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred EEec-cCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 9999 67999999999997 5999999999999999999 88999999995
No 7
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=1.3e-26 Score=177.75 Aligned_cols=124 Identities=24% Similarity=0.368 Sum_probs=94.6
Q ss_pred cCcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCCC------CCC---------CCCc
Q psy8602 9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYCS------EDE---------DEGV 69 (140)
Q Consensus 9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~~------~~~---------~~~~ 69 (140)
+...+|..|+..+....+++|.|+.|+.... ......|++++|+|+||..+... ..| .+++
T Consensus 181 tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~ 260 (332)
T cd02671 181 TLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSL 260 (332)
T ss_pred CHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcccccc
Confidence 4557788999998887777799999976432 22335688999999999865311 122 2233
Q ss_pred cccccCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecccccc---------CCCcEEEEEE
Q psy8602 70 APYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVL---------NSEAYMLVYE 136 (140)
Q Consensus 70 ~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~---------~~~aYiLfY~ 136 (140)
.++.....+..|+|+|||+|.|.++++|||+||+| |++|||+.|++++++++. ..+||||||+
T Consensus 261 ~~~~~~~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 261 EEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYVR----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred ccccCCCCCCeEEEEEEEEEcCCCCCCCeEEEEEE----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 33333445688999999999996689999999999 999999999999887764 3589999995
No 8
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=3.6e-26 Score=168.69 Aligned_cols=107 Identities=29% Similarity=0.548 Sum_probs=82.3
Q ss_pred ccCcccchhhhh---hhhhhcCCccccccccccccCCCC----CCCCCccccccCCCCCcEEEEEEEEeecCCCCCCeEE
Q psy8602 28 DQYCFLCKIEAL---FNEFYNGNVEPIDLTKYRSDYCSE----DEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYT 100 (140)
Q Consensus 28 ~~~C~~C~~~~~---f~~~~~~~~~~l~l~rf~~~~~~~----~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~ 100 (140)
.+.|+.|+.... ......|++++|+|+||....... ....++.++.. ++..|+|+|||+|.|.++++|||+
T Consensus 126 e~~C~~C~~~~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~L~~VV~H~G~~~~~GHY~ 203 (245)
T cd02673 126 EKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKNEEIMKKYCG--TDAKYSLVAVICHLGESPYDGHYI 203 (245)
T ss_pred CccCCCCCCccceeechhhhCChhhEEeeEeeeecccccccccccccccccccC--CCceEEEEEEEEECCCCCCCceEE
Confidence 378999987432 333457889999999996533111 11123444433 567899999999999668999999
Q ss_pred EEEeC---CCcEEEEcCCeeEEecccccc---CCCcEEEEEE
Q psy8602 101 TYISQ---HKRWFLCDDTKIKPVGITDVL---NSEAYMLVYE 136 (140)
Q Consensus 101 ~~~~~---~~~W~~~~D~~v~~~~~~~v~---~~~aYiLfY~ 136 (140)
|++|. .++||.|||+.|+++++++|. +++||||||+
T Consensus 204 a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 204 AYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred EEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 99998 459999999999999999998 5799999995
No 9
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=2.1e-26 Score=174.72 Aligned_cols=126 Identities=17% Similarity=0.325 Sum_probs=96.2
Q ss_pred hhcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccC-CCCCCCCCccccccCCCCCcE
Q psy8602 7 AFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDY-CSEDEDEGVAPYELNLEDNRY 81 (140)
Q Consensus 7 ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~-~~~~~~~~~~~~~~~~~~~~Y 81 (140)
..+...+|..|+..+... ..|..|+... ..+....|++++|+|+||..+. ....+......++....+..|
T Consensus 177 ~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l~~~~Y 252 (311)
T cd02658 177 PVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGKY 252 (311)
T ss_pred CCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcCCCCcE
Confidence 345556677777666553 4677787633 2334467889999999998742 223333333334444467899
Q ss_pred EEEEEEEeecCCCCCCeEEEEEeCC----CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602 82 ELCSVIKHSGLNIDVGHYTTYISQH----KRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136 (140)
Q Consensus 82 ~L~~vi~H~G~~~~~GHY~~~~~~~----~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~ 136 (140)
+|+|||+|.|.++++|||+|++|.. ++||.|||+.|++++..++.+++||||||+
T Consensus 253 ~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 253 ELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 9999999999669999999999998 699999999999999999999999999995
No 10
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=6e-26 Score=173.41 Aligned_cols=127 Identities=21% Similarity=0.296 Sum_probs=96.2
Q ss_pred CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCC-----------CCCCCCCcccccc
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYEL 74 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~ 74 (140)
...+|..|+..+....++.|.|+.|.... .......|++++|+|+||.++.. ..++.+++.++..
T Consensus 158 l~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~ 237 (324)
T cd02668 158 LEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLA 237 (324)
T ss_pred HHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcc
Confidence 34567777777777666669999998643 23334688899999999976532 2234455666533
Q ss_pred C--CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccc---------------------cCCC
Q psy8602 75 N--LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDV---------------------LNSE 129 (140)
Q Consensus 75 ~--~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v---------------------~~~~ 129 (140)
. .++..|+|+|||+|.|.++++|||+|++|.. +.||.|||+.|++++.+.+ .+..
T Consensus 238 ~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (324)
T cd02668 238 ESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRT 317 (324)
T ss_pred cccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCc
Confidence 2 3567899999999999668999999999985 4999999999999977765 2457
Q ss_pred cEEEEEE
Q psy8602 130 AYMLVYE 136 (140)
Q Consensus 130 aYiLfY~ 136 (140)
||||||+
T Consensus 318 ~y~l~y~ 324 (324)
T cd02668 318 AYMLVYK 324 (324)
T ss_pred eEEEEeC
Confidence 9999995
No 11
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=7.1e-26 Score=165.13 Aligned_cols=125 Identities=17% Similarity=0.222 Sum_probs=94.6
Q ss_pred cCcHHHHHHhhcccccCccccCcccchhhhhhhhhhcCCccccccccccccCCCCCCCCCccccccCCCCCcEEEEEEEE
Q psy8602 9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIK 88 (140)
Q Consensus 9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~~~~~~l~l~rf~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~ 88 (140)
+...+|..++..+.......+.+ ++..+.......|++++|||+||.++.....|..+...|+.......|+|+|||+
T Consensus 94 ~L~e~L~~~~~ee~l~~~~~~~~--~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l~~~~Y~L~aVi~ 171 (228)
T cd02665 94 NLHECLEAAMFEGEVELLPSDHS--VKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQIIQQVPYELHAVLV 171 (228)
T ss_pred CHHHHHHHhhhhcccccccccch--hhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCccCCceeEEEEEEE
Confidence 34466777777666644332222 1222223345678999999999998765556666666777766788999999999
Q ss_pred eecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccC--------CCcEEEEEE
Q psy8602 89 HSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLN--------SEAYMLVYE 136 (140)
Q Consensus 89 H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~--------~~aYiLfY~ 136 (140)
|.| ++++|||++++|.. +.||.|||+.|++++.++|.. .+||||||.
T Consensus 172 H~G-~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 172 HEG-QANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred ecC-CCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 999 79999999999864 499999999999999998864 479999994
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=1.4e-25 Score=171.45 Aligned_cols=129 Identities=24% Similarity=0.409 Sum_probs=97.9
Q ss_pred CcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCC-----------CCCCCCCcccccc
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYEL 74 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~ 74 (140)
..++|..|+..+.....+.+.|+.|..... ......|++++|+|+||..+.. ..+..+++.++..
T Consensus 153 l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~ 232 (334)
T cd02659 153 LEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTE 232 (334)
T ss_pred HHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCccccc
Confidence 345677788777766666689999987522 2233578899999999975432 1223344544432
Q ss_pred -------------CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEecccccc-------------
Q psy8602 75 -------------NLEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVL------------- 126 (140)
Q Consensus 75 -------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~------------- 126 (140)
...+..|+|+|||+|.| +.++|||++++|.. +.|+.|||+.|+++++++|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~ 311 (334)
T cd02659 233 KGLAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTY 311 (334)
T ss_pred cccccccccccccCCCCeeEEEEEEEEecC-CCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccccc
Confidence 22467899999999999 89999999999986 59999999999999999884
Q ss_pred ---------CCCcEEEEEEEec
Q psy8602 127 ---------NSEAYMLVYEKKV 139 (140)
Q Consensus 127 ---------~~~aYiLfY~r~~ 139 (140)
+.+||||||+|++
T Consensus 312 ~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 312 DSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred cccccccccccceEEEEEEEeC
Confidence 3469999999975
No 13
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=1.9e-25 Score=170.44 Aligned_cols=127 Identities=26% Similarity=0.364 Sum_probs=99.6
Q ss_pred hcCcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCC----------CCCCCCCccccc
Q psy8602 8 FSHVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYC----------SEDEDEGVAPYE 73 (140)
Q Consensus 8 l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~----------~~~~~~~~~~~~ 73 (140)
.+..++|..|+..+.....+ |.|+.|+.... ......|++++|+|+||..+.. ..+..+++.++.
T Consensus 176 ~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~~~ 254 (328)
T cd02660 176 PTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTPYT 254 (328)
T ss_pred CCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhhhc
Confidence 34456777777777765544 89999997532 3334678899999999986541 122334555554
Q ss_pred c-----------CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC-CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602 74 L-----------NLEDNRYELCSVIKHSGLNIDVGHYTTYISQH-KRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136 (140)
Q Consensus 74 ~-----------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~ 136 (140)
. ...+..|+|+|||+|.| +.++|||++++|.. ++|+.|||+.|++++++++...+||||||.
T Consensus 255 ~~~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 255 SSSIGDTQDSNSLDPDYTYDLFAVVVHKG-TLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred ccccccccccccCCCCceEEEEEEEEeec-cCCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 3 23568899999999999 88999999999999 599999999999999999999999999994
No 14
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2e-25 Score=165.63 Aligned_cols=128 Identities=17% Similarity=0.329 Sum_probs=100.2
Q ss_pred CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCCCCCCccc--------------
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAP-------------- 71 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~~~~~~~~-------------- 71 (140)
..+|++.|-..+.+..+.+|.|+.|..++ .++....|++++|+++||.-. .-..+..|..+
T Consensus 266 l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~-V~~~~kiD~p~gw~~~~~~e~~v~~ 344 (415)
T COG5533 266 LQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHIS-VMGRKKIDTPQGWKNTASVEVNVTL 344 (415)
T ss_pred HHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeeeeeEE-eecccccCCCcchhccCCceecccc
Confidence 67889999998888888889999998743 456668899999999999611 11111111111
Q ss_pred -c--ccCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecc-ccccCCCcEEEEEEEec
Q psy8602 72 -Y--ELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI-TDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 72 -~--~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~-~~v~~~~aYiLfY~r~~ 139 (140)
| ..+-.+.+|.|+|||+|.| ++++|||+++|+.++.|+.|||+.|++++- .+....+||||||+|.+
T Consensus 345 ~f~~~~~~~P~~Y~L~gv~Ch~G-~L~gGHY~s~v~~~~~W~~~dDs~vr~~~~~t~~~~pSsYilFY~r~~ 415 (415)
T COG5533 345 LFNNGIGYIPRKYSLLGVVCHNG-TLNGGHYFSEVKRSGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTRSS 415 (415)
T ss_pred cccCCCCCCccceeEEEEEeecc-eecCceeEEeeeecCceEEechhheeeccceecccCCcceEEEEEecC
Confidence 1 2233678999999999999 999999999999999999999999999964 35556789999999863
No 15
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=4.3e-25 Score=160.64 Aligned_cols=127 Identities=26% Similarity=0.429 Sum_probs=96.6
Q ss_pred cCcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCCCCCC----------CCCcccc--
Q psy8602 9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYCSEDE----------DEGVAPY-- 72 (140)
Q Consensus 9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~~~~~----------~~~~~~~-- 72 (140)
+..++|..++..+.......+.|+.|..... ......|++++|+|+||..+.....+ .+++.++
T Consensus 85 sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~~~~ 164 (230)
T cd02674 85 TLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTPYVD 164 (230)
T ss_pred CHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEeccccccccccccC
Confidence 4455677777666665555689999986443 22335788999999999876422222 2333333
Q ss_pred -ccCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602 73 -ELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136 (140)
Q Consensus 73 -~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~ 136 (140)
.......+|+|+|||+|.| +.++|||++++|.. +.|+.|||+.|++++.+++...+||||||+
T Consensus 165 ~~~~~~~~~Y~L~~vI~H~G-~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 165 TRSFTGPFKYDLYAVVNHYG-SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred cccCCCCceEEEEEEEEeeC-CCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 1123567899999999999 56999999999998 599999999999999999988999999995
No 16
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=4.7e-25 Score=166.05 Aligned_cols=126 Identities=28% Similarity=0.446 Sum_probs=96.8
Q ss_pred cHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCcccccccccccc-C------CCCCCCCCccccccC--CC
Q psy8602 11 VPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSD-Y------CSEDEDEGVAPYELN--LE 77 (140)
Q Consensus 11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~-~------~~~~~~~~~~~~~~~--~~ 77 (140)
...|..++..+....++.+.|+.|..... ......|++++|+|+||..+ . ...+..+++.++... ..
T Consensus 165 ~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~~~~~~ 244 (304)
T cd02661 165 EDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQPNDG 244 (304)
T ss_pred HHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccccCCCC
Confidence 45667777777666556689999987443 22235788999999999876 1 112233445554432 35
Q ss_pred CCcEEEEEEEEeecCCCCCCeEEEEEeCC-CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602 78 DNRYELCSVIKHSGLNIDVGHYTTYISQH-KRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136 (140)
Q Consensus 78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~-~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~ 136 (140)
...|+|+|||+|.|.++++|||++++|.. +.|+.|||..|++++++++.+.+||||||.
T Consensus 245 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 245 PLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred CceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 78999999999999666999999999984 499999999999999999999999999993
No 17
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=6.2e-25 Score=166.19 Aligned_cols=119 Identities=20% Similarity=0.280 Sum_probs=86.8
Q ss_pred cHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCC--C---------CCCCCccccccC
Q psy8602 11 VPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCS--E---------DEDEGVAPYELN 75 (140)
Q Consensus 11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~--~---------~~~~~~~~~~~~ 75 (140)
.++|..++-.+.. ..|..|.... .......|++++|||+||..+... . +..+++.++..
T Consensus 163 ~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~- 236 (305)
T cd02657 163 QDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT- 236 (305)
T ss_pred HHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC-
Confidence 4556666544332 3456665432 233346788999999999865432 1 22223333332
Q ss_pred CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccC-------CCcEEEEEE
Q psy8602 76 LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLN-------SEAYMLVYE 136 (140)
Q Consensus 76 ~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~-------~~aYiLfY~ 136 (140)
++..|+|+|||+|.|.+.++|||+||+|.. +.|+.|||+.|+++++++|.. .+||||||+
T Consensus 237 -~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 237 -PSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred -CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 567999999999999668999999999999 699999999999999999974 589999995
No 18
>KOG1870|consensus
Probab=99.91 E-value=5.4e-25 Score=184.98 Aligned_cols=130 Identities=23% Similarity=0.368 Sum_probs=107.1
Q ss_pred cCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCC----------CCCCcccccc
Q psy8602 9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSED----------EDEGVAPYEL 74 (140)
Q Consensus 9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~----------~~~~~~~~~~ 74 (140)
+...|+..|..+|.+..+..|+|+.|+..+ +...+..|++++||||||.+...... ..+++++|..
T Consensus 697 sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s~~~~ 776 (842)
T KOG1870|consen 697 SLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLSEFVV 776 (842)
T ss_pred cHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcchhhc
Confidence 344577788888888777779999999833 35556789999999999976554333 3345556666
Q ss_pred CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602 75 NLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 75 ~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~ 139 (140)
+.+...|+|+||.+|.| .+.+|||+||+|+.+ +||.|||+.|++++++++.+..||+|||+|++
T Consensus 777 ~~~~~~Y~l~av~nHyG-~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 777 NKEQVLYDLYAVGNHYG-QLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred cCccceeeeeeeecccC-CcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 66669999999999999 899999999999953 99999999999999999999999999999975
No 19
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.91 E-value=2.1e-24 Score=158.62 Aligned_cols=94 Identities=20% Similarity=0.379 Sum_probs=71.9
Q ss_pred hhcCCccccccccccccC---------CCCCCCCCccccccC------------------------CCCCcEEEEEEEEe
Q psy8602 43 FYNGNVEPIDLTKYRSDY---------CSEDEDEGVAPYELN------------------------LEDNRYELCSVIKH 89 (140)
Q Consensus 43 ~~~~~~~~l~l~rf~~~~---------~~~~~~~~~~~~~~~------------------------~~~~~Y~L~~vi~H 89 (140)
...|++++||||||.... ...+..+++.++..+ .....|+|+|||+|
T Consensus 96 ~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H 175 (241)
T cd02670 96 AKAPSCLIICLKRYGKTEGKAQKMFKKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCH 175 (241)
T ss_pred hhCCCeEEEEEEccccCCCcceeCCcEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEe
Confidence 356778889999997643 233445566665322 23468999999999
Q ss_pred ecCCCCCCeEEEEEeCC-------------CcEEEEcCCeeEEeccc------cccCCCcEEEEEE
Q psy8602 90 SGLNIDVGHYTTYISQH-------------KRWFLCDDTKIKPVGIT------DVLNSEAYMLVYE 136 (140)
Q Consensus 90 ~G~~~~~GHY~~~~~~~-------------~~W~~~~D~~v~~~~~~------~v~~~~aYiLfY~ 136 (140)
.|.++++|||+||+|.. +.|+.|||+.|+.+... .+...+||||||+
T Consensus 176 ~G~s~~sGHYva~vr~~~~~~~~~~~~~~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 176 RGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred CCCCCCCcCeEEEEECCcccccccccCCCCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 99668999999999988 38999999998877432 5677899999996
No 20
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=2.5e-24 Score=170.57 Aligned_cols=98 Identities=16% Similarity=0.296 Sum_probs=79.9
Q ss_pred hhhhhhhcCCccccccccccccCCCCCC----------CCCcccccc-----CCCCCcEEEEEEEEeecCCC-CCCeEEE
Q psy8602 38 ALFNEFYNGNVEPIDLTKYRSDYCSEDE----------DEGVAPYEL-----NLEDNRYELCSVIKHSGLNI-DVGHYTT 101 (140)
Q Consensus 38 ~~f~~~~~~~~~~l~l~rf~~~~~~~~~----------~~~~~~~~~-----~~~~~~Y~L~~vi~H~G~~~-~~GHY~~ 101 (140)
+++.....|++++||||||..+.....+ .+|+.|+.. ...+..|+|+|||+|.| +. ++|||++
T Consensus 325 k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~avI~H~G-~~~~sGHY~a 403 (440)
T cd02669 325 KRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVANIVHEG-TPQEDGTWRV 403 (440)
T ss_pred EEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhhhCccccccCCCceEEEEEEEEEec-cCCCCeeEEE
Confidence 3466667899999999999876432222 245666542 13568999999999999 66 9999999
Q ss_pred EEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEE
Q psy8602 102 YISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYE 136 (140)
Q Consensus 102 ~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~ 136 (140)
++|+. ++||.|||+.|+++++++|...+||||||+
T Consensus 404 ~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 404 QLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred EEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 99974 499999999999999999999999999996
No 21
>KOG1868|consensus
Probab=99.90 E-value=3.3e-24 Score=174.31 Aligned_cols=129 Identities=28% Similarity=0.435 Sum_probs=97.2
Q ss_pred CcHHHHHHhhcccccCccccCcccchhhhhh------hhhhcCCccccccccccccCCCCCCCC----------Cccccc
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEALF------NEFYNGNVEPIDLTKYRSDYCSEDEDE----------GVAPYE 73 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f------~~~~~~~~~~l~l~rf~~~~~~~~~~~----------~~~~~~ 73 (140)
.-+|+.-|.-.+....+..|.|+.|+..+.. ..+..|+++++||+||..+.....+.. +..+..
T Consensus 499 L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~~~~ 578 (653)
T KOG1868|consen 499 LEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLSPRF 578 (653)
T ss_pred hHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhchhc
Confidence 4455555555555555666999999986554 345678899999999987642222221 111111
Q ss_pred c--CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602 74 L--NLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 74 ~--~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~ 139 (140)
. ...+..|+|+||++|.| ++++|||+|+|+..+ .|+.|||+.|++++..++.+.+||||||+|.+
T Consensus 579 ~~~~~~~~~Y~L~aVv~H~G-tl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~ 647 (653)
T KOG1868|consen 579 AEKGNNPKSYRLYAVVNHSG-TLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLG 647 (653)
T ss_pred cccCCCccceeeEEEEeccC-cccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCC
Confidence 1 12346699999999999 999999999998864 89999999999999999999999999999864
No 22
>KOG1866|consensus
Probab=99.89 E-value=1.1e-24 Score=175.58 Aligned_cols=137 Identities=23% Similarity=0.417 Sum_probs=110.9
Q ss_pred chhhhhhcCcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccC-----------CCCCCC
Q psy8602 2 NVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDY-----------CSEDED 66 (140)
Q Consensus 2 n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~-----------~~~~~~ 66 (140)
|..+.+=+..+.|.+|...+-+..+++++|++|+.++. ......|+++.|+||||.++. +.++-.
T Consensus 240 ~l~i~~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ 319 (944)
T KOG1866|consen 240 NLDIRHQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRE 319 (944)
T ss_pred eeecccchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchh
Confidence 45555666778899999999999999999999998553 344578999999999997654 234555
Q ss_pred CCccccccC-------------------CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-----cEEEEcCCeeEEecc
Q psy8602 67 EGVAPYELN-------------------LEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-----RWFLCDDTKIKPVGI 122 (140)
Q Consensus 67 ~~~~~~~~~-------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-----~W~~~~D~~v~~~~~ 122 (140)
+|+.|+... ..+.+|+|+||++|+| -+++|||++|++... +||+|||..|++++.
T Consensus 320 ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSG-qAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~ 398 (944)
T KOG1866|consen 320 LDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSG-QASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKM 398 (944)
T ss_pred hcCCceeehhhhhhccccCCcCcccccccCcceeEEEEEEEecc-cccCcchhhhhhhhccCCCCceEeccCccccccch
Confidence 677776431 2468999999999999 999999999998764 999999999999998
Q ss_pred ccccCC--------------------CcEEEEEEEec
Q psy8602 123 TDVLNS--------------------EAYMLVYEKKV 139 (140)
Q Consensus 123 ~~v~~~--------------------~aYiLfY~r~~ 139 (140)
.++... +||||||+|.+
T Consensus 399 n~me~~cfGGey~q~~~~~~~rrR~WNAYmlFYer~~ 435 (944)
T KOG1866|consen 399 NEMENECFGGEYMQMMKRMSYRRRWWNAYMLFYERMD 435 (944)
T ss_pred hhHHHHhhcchhhhcccccchHHHhhhhHHHHHHHhc
Confidence 877531 79999999875
No 23
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.88 E-value=3.9e-23 Score=154.37 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=84.6
Q ss_pred hcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCC----ccccccccccccCCC----------------C
Q psy8602 8 FSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGN----VEPIDLTKYRSDYCS----------------E 63 (140)
Q Consensus 8 l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~----~~~l~l~rf~~~~~~----------------~ 63 (140)
.+..++|..++..+.. +++.|..|+... .......|+ ++.||||||...... .
T Consensus 117 ~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f 193 (268)
T cd02672 117 STFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSP 193 (268)
T ss_pred CCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecc
Confidence 4455677777766533 347899998633 344456788 999999999753211 1
Q ss_pred CCCCCccccc--cCCCCCcEEEEEEEEeecCCCCCCeEEEEEeC------CCcEEEEcCCeeEEeccccccCCCcEEEEE
Q psy8602 64 DEDEGVAPYE--LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQ------HKRWFLCDDTKIKPVGITDVLNSEAYMLVY 135 (140)
Q Consensus 64 ~~~~~~~~~~--~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~------~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY 135 (140)
+..+++.+.. ......+|+|+|||+|.|.+.++|||+|++|. .++||.|||..|+++++ .||||||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiLfY 267 (268)
T cd02672 194 KAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYILLY 267 (268)
T ss_pred cccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheeeec
Confidence 1111111111 11245789999999999955599999999998 35899999999999987 9999999
Q ss_pred E
Q psy8602 136 E 136 (140)
Q Consensus 136 ~ 136 (140)
+
T Consensus 268 ~ 268 (268)
T cd02672 268 Q 268 (268)
T ss_pred C
Confidence 5
No 24
>KOG1867|consensus
Probab=99.86 E-value=3.1e-22 Score=159.54 Aligned_cols=128 Identities=27% Similarity=0.428 Sum_probs=97.0
Q ss_pred CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCC----------CCCCCccccccC
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSE----------DEDEGVAPYELN 75 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~----------~~~~~~~~~~~~ 75 (140)
..+++..+...+.+..+.+..|..|+... .+..-..|.++.++++||....... +..+++.||...
T Consensus 336 ~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~~~ 415 (492)
T KOG1867|consen 336 LLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYCSS 415 (492)
T ss_pred hhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccccc
Confidence 34455555555555555568999998742 3433456778999999996543222 223344444321
Q ss_pred -------CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602 76 -------LEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138 (140)
Q Consensus 76 -------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~ 138 (140)
.++..|+|+|||+|.| +.++|||+||+|..+.|+++||+.|+.+++++|++..||+|||.++
T Consensus 416 ~~~~~~~~~~~~Y~L~AVV~H~G-~~~SGHY~aY~r~~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~ 484 (492)
T KOG1867|consen 416 EKLKSQDNPDHLYELRAVVVHHG-TVGSGHYVAYRRQSGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQE 484 (492)
T ss_pred cccccCCCCCceEEEEEEEEecc-CCCCCceEEEEEeCCCcEEEcCeEEEEeeHHHhhhchhhheehhHH
Confidence 2578999999999999 7999999999999999999999999999999999999999999875
No 25
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.86 E-value=3.5e-22 Score=146.43 Aligned_cols=92 Identities=29% Similarity=0.575 Sum_probs=72.9
Q ss_pred hhcCCccccccccccccC-----------CCCC-CCCCccccccCCC-----CCcEEEEEEEEeecCCCCCCeEEEEEeC
Q psy8602 43 FYNGNVEPIDLTKYRSDY-----------CSED-EDEGVAPYELNLE-----DNRYELCSVIKHSGLNIDVGHYTTYISQ 105 (140)
Q Consensus 43 ~~~~~~~~l~l~rf~~~~-----------~~~~-~~~~~~~~~~~~~-----~~~Y~L~~vi~H~G~~~~~GHY~~~~~~ 105 (140)
...|++++|+++||..+. ...+ +.+++.++..... ...|+|+|||+|.| +.++|||+|++|.
T Consensus 156 ~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G-~~~~GHY~a~v~~ 234 (269)
T PF00443_consen 156 SSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYG-SADSGHYVAYVRD 234 (269)
T ss_dssp EEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEES-STTSEEEEEEEEE
T ss_pred ccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehhhhcccc-ccccceEEEeecc
Confidence 356788999999994332 1233 3455555544333 47999999999999 9999999999998
Q ss_pred CC--cEEEEcCCeeEEeccccccC---CCcEEEEE
Q psy8602 106 HK--RWFLCDDTKIKPVGITDVLN---SEAYMLVY 135 (140)
Q Consensus 106 ~~--~W~~~~D~~v~~~~~~~v~~---~~aYiLfY 135 (140)
.+ +|+.|||+.|++++.++|.. .+||||||
T Consensus 235 ~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 235 SDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp TTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred ccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 87 59999999999999999988 89999999
No 26
>KOG1873|consensus
Probab=99.85 E-value=3.1e-23 Score=167.44 Aligned_cols=128 Identities=28% Similarity=0.446 Sum_probs=95.6
Q ss_pred CcHHHHHHhhcccccCccccCcccchh------hhh-----------h----------h----hhhcCCccccccccccc
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKI------EAL-----------F----------N----EFYNGNVEPIDLTKYRS 58 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~------~~~-----------f----------~----~~~~~~~~~l~l~rf~~ 58 (140)
...||.+|-.-|.+..++.|.|+.|.. +++ + + .-..|||++||||||..
T Consensus 680 vq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKrf~q 759 (877)
T KOG1873|consen 680 VQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKRFFQ 759 (877)
T ss_pred HHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhhhhh
Confidence 345666666666677778899999976 211 0 0 01468899999999965
Q ss_pred cCCC----------CCCCCCcccccc-------CCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC---------------
Q psy8602 59 DYCS----------EDEDEGVAPYEL-------NLEDNRYELCSVIKHSGLNIDVGHYTTYISQH--------------- 106 (140)
Q Consensus 59 ~~~~----------~~~~~~~~~~~~-------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--------------- 106 (140)
+... +++.+++.+++. .+....|+|+|+|.|.| ++.+|||++|+|.+
T Consensus 760 ~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsg-tm~~ghyvayv~~~t~~~~~~~~~~~~~~ 838 (877)
T KOG1873|consen 760 DIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSG-TMSYGHYVAYVRGGTFLDLSAPSNSKDFE 838 (877)
T ss_pred hhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccc-cccCCcchhhhhccchhhccCccccccch
Confidence 4322 222223333321 12446899999999999 99999999999975
Q ss_pred -------CcEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602 107 -------KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138 (140)
Q Consensus 107 -------~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~ 138 (140)
+.||++.|+.|+++++++|+..+||||||+|.
T Consensus 839 sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 839 SDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred hccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 28999999999999999999999999999984
No 27
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.84 E-value=5.4e-21 Score=138.25 Aligned_cols=124 Identities=28% Similarity=0.494 Sum_probs=86.7
Q ss_pred CcHHHHHHhhcccccCccccCcccch---h---hhhhhhhhcCCccccccccccccC-C---------CCCCCCCccccc
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCK---I---EALFNEFYNGNVEPIDLTKYRSDY-C---------SEDEDEGVAPYE 73 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~---~---~~~f~~~~~~~~~~l~l~rf~~~~-~---------~~~~~~~~~~~~ 73 (140)
....|..++..+.... ..|..|. . .+.......|+++.|+++||..+. . ..+..+++.++.
T Consensus 101 l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~~~~ 177 (255)
T cd02257 101 LEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYL 177 (255)
T ss_pred HHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCcccc
Confidence 3444555555554432 4566665 2 122233467889999999997543 1 112222332221
Q ss_pred --------cCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccc-----cCCCcEEEEEE
Q psy8602 74 --------LNLEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDV-----LNSEAYMLVYE 136 (140)
Q Consensus 74 --------~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v-----~~~~aYiLfY~ 136 (140)
.......|+|+|||+|.|.+.++|||++++|.. +.|+.|||..|++++.+++ ...+||+|||+
T Consensus 178 ~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~Y~ 255 (255)
T cd02257 178 SEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255 (255)
T ss_pred ccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEEEC
Confidence 123567899999999999556999999999998 6999999999999999998 56799999995
No 28
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.4e-20 Score=149.34 Aligned_cols=129 Identities=22% Similarity=0.325 Sum_probs=100.8
Q ss_pred cHHHHHHhhcccccCccccCcccchhhhhhhh---hhcCCcccccccccccc-----------CCCCCCCCCccccccC-
Q psy8602 11 VPLIRNFFLSTIHKCKLDQYCFLCKIEALFNE---FYNGNVEPIDLTKYRSD-----------YCSEDEDEGVAPYELN- 75 (140)
Q Consensus 11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~---~~~~~~~~l~l~rf~~~-----------~~~~~~~~~~~~~~~~- 75 (140)
.+.++.|...+.+..++.+.|..-.++..-+- -..||++-|+||||..+ ..+++...|+.||...
T Consensus 341 qeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~d 420 (1089)
T COG5077 341 QESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRD 420 (1089)
T ss_pred HHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCch
Confidence 35677888888888777777776666443221 24678899999999543 3456667788887542
Q ss_pred -----CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCC--------------------
Q psy8602 76 -----LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNS-------------------- 128 (140)
Q Consensus 76 -----~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~-------------------- 128 (140)
..+..|.|+||++|.| .++.|||+|+.|.. +.||+|||++|+.++..+|+..
T Consensus 421 a~ksen~d~vY~LygVlVHsG-Dl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r~~~~~kR 499 (1089)
T COG5077 421 ADKSENSDAVYVLYGVLVHSG-DLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKR 499 (1089)
T ss_pred hhhhcccCcEEEEEEEEEecc-ccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCcccccCCchhhh
Confidence 3458999999999999 99999999999955 4999999999999999988632
Q ss_pred --CcEEEEEEEecC
Q psy8602 129 --EAYMLVYEKKVL 140 (140)
Q Consensus 129 --~aYiLfY~r~~l 140 (140)
+||||.|-|+++
T Consensus 500 fmsAYmLvYlRks~ 513 (1089)
T COG5077 500 FMSAYMLVYLRKSM 513 (1089)
T ss_pred hhhhheeeeehHhH
Confidence 599999999863
No 29
>KOG1864|consensus
Probab=99.78 E-value=6.4e-19 Score=142.81 Aligned_cols=132 Identities=23% Similarity=0.337 Sum_probs=98.6
Q ss_pred hhhcCcHHHHHHhhcccccCccccCcccchh----hhhhhhhhcCCccccccccccccCCCC--CCCCC--ccccc----
Q psy8602 6 QAFSHVPLIRNFFLSTIHKCKLDQYCFLCKI----EALFNEFYNGNVEPIDLTKYRSDYCSE--DEDEG--VAPYE---- 73 (140)
Q Consensus 6 Q~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~----~~~f~~~~~~~~~~l~l~rf~~~~~~~--~~~~~--~~~~~---- 73 (140)
|--+.+++|..|...+.+..++..+|..|.. .+.++....|.++.|+||||.+..... .+... ..|-.
T Consensus 419 e~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~ 498 (587)
T KOG1864|consen 419 ENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLK 498 (587)
T ss_pred ccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeec
Confidence 4556677888888888888888899999976 334555567778999999998764111 11111 11110
Q ss_pred --cCC---CCCcEEEEEEEEeecCCCCCCeEEEEEeCCCc-EEEEcCCeeEEeccccccC---CCcEEEEEEE
Q psy8602 74 --LNL---EDNRYELCSVIKHSGLNIDVGHYTTYISQHKR-WFLCDDTKIKPVGITDVLN---SEAYMLVYEK 137 (140)
Q Consensus 74 --~~~---~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~-W~~~~D~~v~~~~~~~v~~---~~aYiLfY~r 137 (140)
... +...|+|+|||+|.|.+++.|||+||+|..+. |+.|||+.|+.++.+++.. .+.|+++|..
T Consensus 499 ~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~ 571 (587)
T KOG1864|consen 499 DTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV 571 (587)
T ss_pred cccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeE
Confidence 111 23799999999999999999999999999995 9999999999999988865 4677777754
No 30
>KOG4598|consensus
Probab=99.76 E-value=5.2e-20 Score=148.53 Aligned_cols=128 Identities=26% Similarity=0.393 Sum_probs=95.8
Q ss_pred cHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccCC-----------CCCCCCCccc----
Q psy8602 11 VPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAP---- 71 (140)
Q Consensus 11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~---- 71 (140)
.+.|..|...+.+...+++.|..|+.+.. +....-|-++.||||||.+++. .+++.+++..
T Consensus 217 eeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~ 296 (1203)
T KOG4598|consen 217 EEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNK 296 (1203)
T ss_pred HHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhh
Confidence 45688888888888888899999997542 3222234468999999966542 1111111000
Q ss_pred ------------------------------------------c----------------------ccCCCCCcEEEEEEE
Q psy8602 72 ------------------------------------------Y----------------------ELNLEDNRYELCSVI 87 (140)
Q Consensus 72 ------------------------------------------~----------------------~~~~~~~~Y~L~~vi 87 (140)
. ....++..|+|++|.
T Consensus 297 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~im 376 (1203)
T KOG4598|consen 297 EKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVM 376 (1203)
T ss_pred ccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhh
Confidence 0 001257899999999
Q ss_pred EeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccC-------------CCcEEEEEEEec
Q psy8602 88 KHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLN-------------SEAYMLVYEKKV 139 (140)
Q Consensus 88 ~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~-------------~~aYiLfY~r~~ 139 (140)
+|+| +..+|||+||+++-+ .||.|||.+|+-+++++++. .+||||.|+|.+
T Consensus 377 ihsg-~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id 442 (1203)
T KOG4598|consen 377 VHSG-NAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRID 442 (1203)
T ss_pred eecC-CCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcC
Confidence 9999 999999999999987 99999999999999999963 479999999865
No 31
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.58 E-value=4.1e-15 Score=114.66 Aligned_cols=59 Identities=31% Similarity=0.581 Sum_probs=53.0
Q ss_pred CCCcEEEEEEEEeecCCCCCCeEEEEEeCCC--cEEEEcCCeeEEeccccccC------CCcEEEEEE
Q psy8602 77 EDNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLN------SEAYMLVYE 136 (140)
Q Consensus 77 ~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v~~~~~~~v~~------~~aYiLfY~ 136 (140)
.+..|+|+|||+|.| +.++|||++++|... .|+.|||+.|++++.+++.. .+||+|+|.
T Consensus 277 ~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 277 KSYGYRLHAVFIHRG-EASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred CCCceEEEEEEEeec-CCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEeC
Confidence 467899999999999 779999999999764 99999999999999988864 489999994
No 32
>KOG0944|consensus
Probab=99.41 E-value=4.7e-13 Score=108.12 Aligned_cols=61 Identities=25% Similarity=0.516 Sum_probs=53.6
Q ss_pred CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602 76 LEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138 (140)
Q Consensus 76 ~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~ 138 (140)
.++.+|.|+|+|.|.|.+.++|||++++|..++|..|||+.|- ..++--+..+||-||+|.
T Consensus 702 dg~~~Y~L~a~IsHmGts~~sGHYV~hirKegkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 702 DGPGKYALFAFISHMGTSAHSGHYVCHIRKEGKWVLFNDEKVA--ASQEPPKDLGYVYLYTRI 762 (763)
T ss_pred CCCcceeEEEEEecCCCCCCCcceEEEEeecCcEEEEcchhhh--hccCChhhcceEEEEEec
Confidence 4678999999999999999999999999999999999999987 233334578999999995
No 33
>KOG1872|consensus
Probab=99.27 E-value=3.5e-12 Score=99.70 Aligned_cols=63 Identities=32% Similarity=0.540 Sum_probs=57.4
Q ss_pred CCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcCCeeEEeccccccC-------CCcEEEEEEEecC
Q psy8602 78 DNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLN-------SEAYMLVYEKKVL 140 (140)
Q Consensus 78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D~~v~~~~~~~v~~-------~~aYiLfY~r~~l 140 (140)
...|+|.|||-|.|++..+|||++++|.++ .|++|||+.|+.+..+.+.+ ..||||.|.-+.|
T Consensus 401 ~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~~l 471 (473)
T KOG1872|consen 401 SGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKARVL 471 (473)
T ss_pred cceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccccc
Confidence 567999999999999999999999999998 99999999999999988875 3799999987654
No 34
>KOG1863|consensus
Probab=99.26 E-value=3.8e-12 Score=110.27 Aligned_cols=128 Identities=25% Similarity=0.308 Sum_probs=94.4
Q ss_pred CcHHHHHHhhcccccCccccCcccchhhhh----hhhhhcCCccccccccccccC-----------CCCCCCCCcccccc
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDY-----------CSEDEDEGVAPYEL 74 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~-----------~~~~~~~~~~~~~~ 74 (140)
..+.|..|+..|.+..++ ..|..|..... ..-...||++.|+|+||.++. +.++...++.++..
T Consensus 320 l~~sf~~y~~~E~l~gdn-~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~ 398 (1093)
T KOG1863|consen 320 LEDSLHLYFEAEILLGDN-KYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLS 398 (1093)
T ss_pred HHHHHHHhhhHHHhcCCc-cccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhcc
Confidence 445677888878887777 47777765322 223467899999999997653 34445555555533
Q ss_pred C-----CCC-CcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCC----------------Cc
Q psy8602 75 N-----LED-NRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNS----------------EA 130 (140)
Q Consensus 75 ~-----~~~-~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~----------------~a 130 (140)
. ... ..|+|.||.+|.| ..++|||++|++.. +.|+.|||..|+.++..++... .|
T Consensus 399 ~~~~~~~~~~~~y~l~~v~vh~g-~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 477 (1093)
T KOG1863|consen 399 RFKAEESERSAVYSLHAVLVHSG-DAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNA 477 (1093)
T ss_pred ccchhhhhccceeccchhhcccc-cccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCc
Confidence 1 122 4999999999988 99999999999944 3999999999999987776421 28
Q ss_pred EEEEEEEec
Q psy8602 131 YMLVYEKKV 139 (140)
Q Consensus 131 YiLfY~r~~ 139 (140)
|+|+|.|.+
T Consensus 478 ~~lv~~~~s 486 (1093)
T KOG1863|consen 478 YMLVYIRDS 486 (1093)
T ss_pred ceEEEEecC
Confidence 999999875
No 35
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1e-11 Score=98.25 Aligned_cols=59 Identities=31% Similarity=0.635 Sum_probs=54.7
Q ss_pred CcEEEEEEEEeecCCCCCCeEEEEEeCCC----cEEEEcCCeeEEeccccccCCCcEEEEEEE
Q psy8602 79 NRYELCSVIKHSGLNIDVGHYTTYISQHK----RWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137 (140)
Q Consensus 79 ~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~----~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r 137 (140)
..|.|.|||+|.|.++++|||++|+|... +|..+||+.+-.++.=++...+.||.||+|
T Consensus 686 ~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 686 KPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred CcccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 45999999999999999999999999987 999999999988877778889999999988
No 36
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.22 E-value=3.7e-11 Score=90.90 Aligned_cols=89 Identities=20% Similarity=0.314 Sum_probs=61.8
Q ss_pred cCcccchhhhh----hhhhhcCCccccccccccccCCCCCCCC---------Cccccc---------cCCCCCcEEEEEE
Q psy8602 29 QYCFLCKIEAL----FNEFYNGNVEPIDLTKYRSDYCSEDEDE---------GVAPYE---------LNLEDNRYELCSV 86 (140)
Q Consensus 29 ~~C~~C~~~~~----f~~~~~~~~~~l~l~rf~~~~~~~~~~~---------~~~~~~---------~~~~~~~Y~L~~v 86 (140)
..|..|+.... -.....|+++.|+++++.....+..+.. .+..+. ...+..+|+|.|+
T Consensus 181 a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~ 260 (295)
T PF13423_consen 181 AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHFIADDSQSDLEGESGIFKYELRSM 260 (295)
T ss_pred ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeeeccccccccccccccCCCCceEEEEEEE
Confidence 57888876332 2223578899999999876622211100 011011 1235679999999
Q ss_pred EEeecCCCCCCeEEEEEeCC----CcEEEEcCCee
Q psy8602 87 IKHSGLNIDVGHYTTYISQH----KRWFLCDDTKI 117 (140)
Q Consensus 87 i~H~G~~~~~GHY~~~~~~~----~~W~~~~D~~v 117 (140)
|+|.|.+.++|||+|++|.. .+||.|||-.|
T Consensus 261 V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 261 VCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred EEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 99999889999999999997 49999999765
No 37
>KOG1871|consensus
Probab=99.21 E-value=2.5e-11 Score=93.09 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=73.5
Q ss_pred hhcCCccccccccccccCCCC-CCCCC--------------cccc---ccCCCCCcEEEEEEEEeecCCCCCCeEEEEEe
Q psy8602 43 FYNGNVEPIDLTKYRSDYCSE-DEDEG--------------VAPY---ELNLEDNRYELCSVIKHSGLNIDVGHYTTYIS 104 (140)
Q Consensus 43 ~~~~~~~~l~l~rf~~~~~~~-~~~~~--------------~~~~---~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~ 104 (140)
-..|+++++||+||.+..... .+..+ ++++ ........|+|.|++.|.|.+...|||+.-+-
T Consensus 300 eklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~ 379 (420)
T KOG1871|consen 300 EKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVS 379 (420)
T ss_pred hhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeee
Confidence 346778999999997653211 11110 1111 11234578999999999999999999999999
Q ss_pred CCC--cEEEEcCCeeEEeccccccC----CCcEEEEEEEec
Q psy8602 105 QHK--RWFLCDDTKIKPVGITDVLN----SEAYMLVYEKKV 139 (140)
Q Consensus 105 ~~~--~W~~~~D~~v~~~~~~~v~~----~~aYiLfY~r~~ 139 (140)
+.. .|+.+||..|..+..++|+. ..||+|+|+|.+
T Consensus 380 ~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~d 420 (420)
T KOG1871|consen 380 RSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEAD 420 (420)
T ss_pred ecccCceeEeccceeeeccHhhhccccCccchheeEeeecC
Confidence 887 99999999999999999976 379999998864
No 38
>KOG2026|consensus
Probab=98.41 E-value=2.2e-08 Score=77.01 Aligned_cols=98 Identities=12% Similarity=0.272 Sum_probs=80.7
Q ss_pred hhhhhhhcCCccccccccccccCCCCCCCCCcccccc---------------CCCCCcEEEEEEEEeecCCCCCCeEEEE
Q psy8602 38 ALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYEL---------------NLEDNRYELCSVIKHSGLNIDVGHYTTY 102 (140)
Q Consensus 38 ~~f~~~~~~~~~~l~l~rf~~~~~~~~~~~~~~~~~~---------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~ 102 (140)
++|..+.+|+.+++|++||..+....+++.++..|+. ...-..|.|.|.++|. -.-|||...
T Consensus 327 ~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~---~e~~~~riq 403 (442)
T KOG2026|consen 327 MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHE---DEDGNFRIQ 403 (442)
T ss_pred hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhhhhhcccccCccccccchhhhhcC---cccCceEEE
Confidence 6677788999999999999988766666665555441 1123779999999996 467999999
Q ss_pred EeCCC--cEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602 103 ISQHK--RWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138 (140)
Q Consensus 103 ~~~~~--~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~ 138 (140)
+++++ +||.++|-.|++..++.+.-.++||..|++.
T Consensus 404 i~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 404 IYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred EEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 99987 9999999999999999999999999988874
No 39
>KOG1275|consensus
Probab=98.19 E-value=5.2e-06 Score=70.08 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=51.5
Q ss_pred CcEEEEEEEEeecCCCCCCeEEEEEeCCC----------cEEEEcCCeeEEeccccccC-----CCcEEEEE
Q psy8602 79 NRYELCSVIKHSGLNIDVGHYTTYISQHK----------RWFLCDDTKIKPVGITDVLN-----SEAYMLVY 135 (140)
Q Consensus 79 ~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~----------~W~~~~D~~v~~~~~~~v~~-----~~aYiLfY 135 (140)
.+|+|.|+|+|.|.+-+.+|.+++++..+ +||.|||--|.+++++|+.. .-+-||+|
T Consensus 789 ~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 789 VVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred EEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 78999999999998889999999999763 89999999999999998875 35889999
No 40
>KOG1865|consensus
Probab=97.84 E-value=8e-06 Score=65.71 Aligned_cols=44 Identities=30% Similarity=0.665 Sum_probs=37.2
Q ss_pred CchhhhhhcCcHHHHHHhhccccc--CccccCcccchhhhhhhhhh
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHK--CKLDQYCFLCKIEALFNEFY 44 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~--~~~~~~C~~C~~~~~f~~~~ 44 (140)
+|++||||+.+|||.+|++++.+. |.....|..|.++.......
T Consensus 120 aNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~ 165 (545)
T KOG1865|consen 120 ANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRAL 165 (545)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHh
Confidence 699999999999999999999987 44458899999988765443
No 41
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.80 E-value=0.00076 Score=51.47 Aligned_cols=43 Identities=51% Similarity=0.981 Sum_probs=35.3
Q ss_pred CchhhhhhcCcHHHHHHhhcccccC----ccccCcccchhhhhhhhh
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKC----KLDQYCFLCKIEALFNEF 43 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~----~~~~~C~~C~~~~~f~~~ 43 (140)
|||+||||.++|++++++++..... .....|..|.+.+.|..+
T Consensus 12 ~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l 58 (328)
T cd02660 12 MNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEF 58 (328)
T ss_pred HHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHH
Confidence 7999999999999999999875442 122678999998888877
No 42
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.73 E-value=0.00074 Score=54.08 Aligned_cols=47 Identities=34% Similarity=0.447 Sum_probs=36.0
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCc--cccCcccchhhhhhhhhhcCC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCK--LDQYCFLCKIEALFNEFYNGN 47 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~--~~~~C~~C~~~~~f~~~~~~~ 47 (140)
|||+||||.++|+|++++++...... ....|..|.+...+.+++++.
T Consensus 131 mNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~ 179 (440)
T cd02669 131 ANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPR 179 (440)
T ss_pred HHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccc
Confidence 79999999999999999998765421 123466777788888777664
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=96.39 E-value=0.016 Score=43.05 Aligned_cols=42 Identities=36% Similarity=0.778 Sum_probs=34.2
Q ss_pred cccCCCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcCCe
Q psy8602 72 YELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTK 116 (140)
Q Consensus 72 ~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D~~ 116 (140)
+...-++..|.+.+||...- . .-|+++++++.+ .|..+||-.
T Consensus 210 ysF~feg~~Y~Vt~VIQY~~-~--~~HFvtWi~~~dGsWLecDDLk 252 (275)
T PF15499_consen 210 YSFHFEGCLYQVTSVIQYQA-N--LNHFVTWIRDSDGSWLECDDLK 252 (275)
T ss_pred cceeecCeeEEEEEEEEEec-c--CceeEEEEEcCCCCeEeeccCC
Confidence 33344678899999998866 3 569999999998 999999965
No 44
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=96.07 E-value=0.0035 Score=47.03 Aligned_cols=43 Identities=30% Similarity=0.654 Sum_probs=31.4
Q ss_pred CchhhhhhcCcHHHHHHhhcccccC--ccccCcccchhhhhhhhh
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKC--KLDQYCFLCKIEALFNEF 43 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~--~~~~~C~~C~~~~~f~~~ 43 (140)
|||+||+|.++|++++++++..... .....|..|.+...+..+
T Consensus 13 ~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 57 (304)
T cd02661 13 LNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERA 57 (304)
T ss_pred HHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHH
Confidence 7999999999999999998654322 122567888877655444
No 45
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.003 Score=52.25 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.6
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCcc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKL 27 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~ 27 (140)
|||+||||.+++.|+.||+++....+.
T Consensus 277 MNSaLQCL~ht~eLrdyFlsdeye~~i 303 (823)
T COG5560 277 MNSALQCLMHTWELRDYFLSDEYEESI 303 (823)
T ss_pred cchHHHHHhccHHHHHHhhhhhhHhhh
Confidence 899999999999999999999887544
No 46
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.92 E-value=0.0052 Score=46.62 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=33.2
Q ss_pred CchhhhhhcCcHHHHHHhhccccc--C--ccccCcccchhhhhhhhhhcC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHK--C--KLDQYCFLCKIEALFNEFYNG 46 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~--~--~~~~~C~~C~~~~~f~~~~~~ 46 (140)
|||+||||.++|++++++++.... + .....|..|.+.+.+..+.++
T Consensus 11 ~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~ 60 (311)
T cd02658 11 LNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSG 60 (311)
T ss_pred HHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCC
Confidence 799999999999999999873221 1 112567888888776655443
No 47
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.75 E-value=0.0055 Score=46.96 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=39.2
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCc-----------cccCcccchhhhhhhhhhcCCccccccccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCK-----------LDQYCFLCKIEALFNEFYNGNVEPIDLTKY 56 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~-----------~~~~C~~C~~~~~f~~~~~~~~~~l~l~rf 56 (140)
|||+||+|.++|++++++++-..... ....|..|.+.+.|..++.+....+++..|
T Consensus 11 ~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~~~i~p~~f 77 (324)
T cd02668 11 VNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNRSVVDPSGF 77 (324)
T ss_pred HHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCCceEChHHH
Confidence 79999999999999999986543211 012567777788887777665445555444
No 48
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=95.13 E-value=0.011 Score=44.65 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=34.3
Q ss_pred CchhhhhhcCcHHHHHHhhcccccC---ccccCcccchhhhhhhhhhcC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKC---KLDQYCFLCKIEALFNEFYNG 46 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~---~~~~~C~~C~~~~~f~~~~~~ 46 (140)
|||+||+|.++|+++.++++..... .....|..|.+++.|..+...
T Consensus 11 ~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~ 59 (305)
T cd02657 11 LNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKK 59 (305)
T ss_pred HHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhC
Confidence 7999999999999999998765421 112457778888887766544
No 49
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=94.64 E-value=0.019 Score=41.64 Aligned_cols=56 Identities=25% Similarity=0.471 Sum_probs=37.7
Q ss_pred CchhhhhhcCcHHHHHHhhccc------ccC-ccccCcccchhhhhhhhhhcC--Cccccccccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTI------HKC-KLDQYCFLCKIEALFNEFYNG--NVEPIDLTKY 56 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~------~~~-~~~~~C~~C~~~~~f~~~~~~--~~~~l~l~rf 56 (140)
|||+||+|.++|++++++++.. ... .....|..+.+++.+..++.+ ....+++..|
T Consensus 13 lNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i~~~~~ 77 (269)
T PF00443_consen 13 LNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNSSDSSISPSDF 77 (269)
T ss_dssp HHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCSSSSEEHCHHH
T ss_pred HhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcccccceeeccc
Confidence 6999999999999999999751 111 111456777788888777766 3333444333
No 50
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=94.41 E-value=0.037 Score=42.28 Aligned_cols=46 Identities=24% Similarity=0.173 Sum_probs=33.7
Q ss_pred CchhhhhhcCcHHHHHHhhccccc-CccccCcccchhhhhhhhhhcC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHK-CKLDQYCFLCKIEALFNEFYNG 46 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~-~~~~~~C~~C~~~~~f~~~~~~ 46 (140)
|||+||+|.++|++++++++-... ......|..|.+...|..+...
T Consensus 14 ~NsvLQ~L~~~~~f~~~~l~~~~~~~~~~~~~~~~~l~~lf~~~~~~ 60 (334)
T cd02659 14 MNSLLQQLYMTPEFRNAVYSIPPTEDDDDNKSVPLALQRLFLFLQLS 60 (334)
T ss_pred HHHHHHHHhcCHHHHHHHHcCCCcccCcccccHHHHHHHHHHHHHhC
Confidence 799999999999999999985211 1122567788888777665543
No 51
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=94.38 E-value=0.052 Score=38.39 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.1
Q ss_pred CCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602 96 VGHYTTYISQHKRWFLCDDTKIKPVGI 122 (140)
Q Consensus 96 ~GHY~~~~~~~~~W~~~~D~~v~~~~~ 122 (140)
.||-+.+++..+.||.+||+.+-+-++
T Consensus 138 ~~Havfa~~ts~gWy~iDDe~~y~~tP 164 (193)
T PF05408_consen 138 QEHAVFACVTSDGWYAIDDEDFYPWTP 164 (193)
T ss_dssp TTEEEEEEEETTCEEEEETTEEEE---
T ss_pred CcceEEEEEeeCcEEEecCCeeeeCCC
Confidence 699999999999999999999998855
No 52
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=94.36 E-value=0.017 Score=43.33 Aligned_cols=20 Identities=25% Similarity=0.602 Sum_probs=18.8
Q ss_pred CchhhhhhcCcHHHHHHhhc
Q psy8602 1 MNVILQAFSHVPLIRNFFLS 20 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~ 20 (140)
|||+||+|.++|++++++++
T Consensus 11 ~NsvLQ~L~~~~~~~~~~l~ 30 (279)
T cd02667 11 FNAVMQNLSQTPALRELLSE 30 (279)
T ss_pred HHHHHHHHhcCHHHHHHHHH
Confidence 79999999999999999975
No 53
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=93.73 E-value=0.046 Score=42.03 Aligned_cols=43 Identities=26% Similarity=0.161 Sum_probs=29.1
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhhhhh
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEF 43 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~ 43 (140)
|||+||||.++|++++++++..........+..+.....|..+
T Consensus 11 ~NS~LQ~L~~~~~fr~~ll~~~~~~~~~~~~~~~~L~~lf~~l 53 (327)
T cd02664 11 MNSVLQALFMAKDFRRQVLSLNLPRLGDSQSVMKKLQLLQAHL 53 (327)
T ss_pred HHHHHHHHHCcHHHHHHHHcCCccccCCcchHHHHHHHHHHHH
Confidence 7999999999999999999876432111233445555544433
No 54
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=91.98 E-value=0.068 Score=39.24 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.7
Q ss_pred CchhhhhhcCcHHHHHHhhccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTI 22 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~ 22 (140)
|||+||+|.+.|++++++.+..
T Consensus 11 ~ns~lQ~L~~~~~f~~~~~~~~ 32 (240)
T cd02662 11 MNSVLQALASLPSLIEYLEEFL 32 (240)
T ss_pred HHHHHHHHHCCHHHHHHHHHHH
Confidence 7999999999999999987653
No 55
>KOG1867|consensus
Probab=89.91 E-value=0.16 Score=41.49 Aligned_cols=47 Identities=45% Similarity=0.839 Sum_probs=40.7
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCccc---cCcccchhhhhhhhhhcCC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKLD---QYCFLCKIEALFNEFYNGN 47 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~---~~C~~C~~~~~f~~~~~~~ 47 (140)
||+++|++.+.|..+..++.+.+.++.. ..|..|...+.+..++++.
T Consensus 173 mn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~ 222 (492)
T KOG1867|consen 173 MNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGH 222 (492)
T ss_pred HHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCC
Confidence 7999999999999999999999874332 7899999999988887776
No 56
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=89.58 E-value=0.17 Score=39.47 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.1
Q ss_pred CchhhhhhcCcHHHHHHhhccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTI 22 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~ 22 (140)
|||+||+|..+|+|+.+++.-.
T Consensus 13 mNSlLQ~L~~i~~lR~~i~~~~ 34 (343)
T cd02666 13 LNSLLQYFFTIKPLRDLVLNFD 34 (343)
T ss_pred HHHHHHHHHccHHHHHHHHcCC
Confidence 8999999999999999998743
No 57
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=86.55 E-value=0.33 Score=37.57 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=17.0
Q ss_pred CchhhhhhcCcHHHHHHhh
Q psy8602 1 MNVILQAFSHVPLIRNFFL 19 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l 19 (140)
|||+||||.++|.++....
T Consensus 36 mNSvLQ~L~~~p~fr~~l~ 54 (332)
T cd02671 36 LNSVLQVLYFCPGFKHGLK 54 (332)
T ss_pred HHHHHHHHHcChHHHHHHH
Confidence 8999999999999988753
No 58
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=85.57 E-value=0.36 Score=37.22 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.9
Q ss_pred CchhhhhhcCcHHHHHHhhccccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHK 24 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~ 24 (140)
|||+||||..+..|...++.|+..
T Consensus 83 mNc~lQCl~~~~dL~~M~~~~~yl 106 (415)
T COG5533 83 MNCALQCLLSIGDLNTMLQGRFYL 106 (415)
T ss_pred HHHHHHHHHhhhHHHHHhhhhhhh
Confidence 899999999999999988888865
No 59
>KOG2026|consensus
Probab=77.79 E-value=1.1 Score=35.40 Aligned_cols=23 Identities=48% Similarity=0.704 Sum_probs=20.7
Q ss_pred CchhhhhhcCcHHHHHHhhcccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIH 23 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~ 23 (140)
.|+++|.+++.+|+++||+.+.-
T Consensus 146 ~n~vl~~ls~v~PlRnyFl~~~n 168 (442)
T KOG2026|consen 146 ANAVLQALSHVVPLRNYFLLEEN 168 (442)
T ss_pred HHHHHHHHhccchhhhhhccccc
Confidence 48999999999999999999844
No 60
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=77.16 E-value=3.1 Score=17.92 Aligned_cols=14 Identities=14% Similarity=0.771 Sum_probs=10.5
Q ss_pred EEeCCCcEEEEcCC
Q psy8602 102 YISQHKRWFLCDDT 115 (140)
Q Consensus 102 ~~~~~~~W~~~~D~ 115 (140)
+++.++.||.|+++
T Consensus 3 W~~~~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQDNGNWYYFDSD 16 (19)
T ss_dssp EEEETTEEEEETTT
T ss_pred CEEECCEEEEeCCC
Confidence 45666799999875
No 61
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=75.81 E-value=1.9 Score=32.41 Aligned_cols=39 Identities=33% Similarity=0.678 Sum_probs=26.7
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhh
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALF 40 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f 40 (140)
+|++||.+-.+|+++++.......+.. ..|..|.+...|
T Consensus 27 ~n~~lq~~~~~~~~~~~~~~~~~~~~~-~~~l~~el~~lf 65 (268)
T cd02672 27 CNSLLQLLYFIPPFRNFTAIILVACPK-ESCLLCELGYLF 65 (268)
T ss_pred HHHHHHHHHhcHHHHHHHHhhcccCCc-CccHHHHHHHHH
Confidence 699999999999999972111121222 678888875544
No 62
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=71.71 E-value=7 Score=27.09 Aligned_cols=34 Identities=15% Similarity=0.226 Sum_probs=27.0
Q ss_pred EEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEe
Q psy8602 82 ELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPV 120 (140)
Q Consensus 82 ~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~ 120 (140)
...|+|++.+ .|+++.-|-++.||.+|-..-.|.
T Consensus 98 ~~~gfI~N~~-----~HWf~iRki~~~wyNLDS~l~~P~ 131 (157)
T PF02099_consen 98 NEFGFICNLS-----RHWFAIRKIGGQWYNLDSKLKEPE 131 (157)
T ss_dssp CSSEEEEECT-----TEEEEEEEETTEEEEECTTTSS-E
T ss_pred hceEEEeccC-----cceEEEEeeCCeeEeccCCCCCCc
Confidence 4568888855 799999999999999998765544
No 63
>KOG1868|consensus
Probab=66.96 E-value=1.5 Score=37.16 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.7
Q ss_pred CchhhhhhcCcHHHHHHhhcccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIH 23 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~ 23 (140)
||+++||+..++.++..|+++.+
T Consensus 313 mn~ilQCl~~t~~lr~~~L~~~~ 335 (653)
T KOG1868|consen 313 MNSILQCLFSTGELRDNFLSIKL 335 (653)
T ss_pred HHHHHHHHhhccccchhhhhHHH
Confidence 79999999999999988888843
No 64
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=66.05 E-value=10 Score=29.41 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=21.5
Q ss_pred EeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccc
Q psy8602 88 KHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGIT 123 (140)
Q Consensus 88 ~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~ 123 (140)
+-.| +.++|||+ +.+..+.- +|.....+.+..
T Consensus 266 vF~G-~~~~GHYt-~~~~~~~~--~Dg~~~~k~~~~ 297 (320)
T PF08715_consen 266 VFTG-STDSGHYT-HDVAGKAM--YDGDKVKKFSDN 297 (320)
T ss_dssp EEES-CTTTCEEE-EEEESSSE--EETTEEEEESEE
T ss_pred EEEc-CCCccceE-EEccCcee--EEcCcccccCcc
Confidence 3579 88999999 77665533 366666665543
No 65
>KOG1870|consensus
Probab=65.52 E-value=2.6 Score=36.87 Aligned_cols=25 Identities=36% Similarity=0.566 Sum_probs=23.1
Q ss_pred CchhhhhhcCcHHHHHHhhcccccC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKC 25 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~ 25 (140)
||+.+||+.+.|++++||++++...
T Consensus 258 mns~~q~l~~~~~l~e~f~~~~~~~ 282 (842)
T KOG1870|consen 258 MNSALQCLSNTPELLEYFLSDLYDR 282 (842)
T ss_pred chhhhhhhccCcchhHHHHhHhhHh
Confidence 8999999999999999999998754
No 66
>KOG1873|consensus
Probab=62.75 E-value=3.7 Score=35.33 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=21.4
Q ss_pred CchhhhhhcCcHHHHHHhhccccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHK 24 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~ 24 (140)
.||+||+|+.+|-|+..+.+....
T Consensus 217 FNavMQnL~qt~~L~d~l~e~~~S 240 (877)
T KOG1873|consen 217 FNAVMQNLAQTPALRDVLKEEKES 240 (877)
T ss_pred HHHHHHHHhhcHHHHHHHHhhccC
Confidence 499999999999999999887654
No 67
>PF08770 SoxZ: Sulphur oxidation protein SoxZ; InterPro: IPR014880 SoxZ forms an anti parallel beta structure and forms a complex with SoxY. Sulphur oxidation occurs at the thiol of a conserved cysteine residue of the SoxY subunit []. ; PDB: 1V8H_B 2OX5_E 2OXG_E 2OXH_C.
Probab=59.44 E-value=43 Score=21.26 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=33.9
Q ss_pred CcEEEEEEEEe---ecCCCC-CC-----eEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEe
Q psy8602 79 NRYELCSVIKH---SGLNID-VG-----HYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138 (140)
Q Consensus 79 ~~Y~L~~vi~H---~G~~~~-~G-----HY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~ 138 (140)
..=++.+.|.| .|...+ .| ||+..+.. .+||..|-.++...-.+.++|+=|+-+-
T Consensus 13 ~~~~vk~li~HPMetGl~~d~tg~~iPa~~I~~v~v-----~~ng~~v~~~~~~~siS~NP~l~F~~~~ 76 (100)
T PF08770_consen 13 GVVEVKALISHPMETGLRKDQTGKYIPAHFIEEVEV-----TYNGKPVFRADWGPSISENPYLRFSFKG 76 (100)
T ss_dssp EEEEEEEEE----B-S-BB-TTS-BB--B-EEEEEE-----EETTEEEEEEEE-TTB-SS-EEEEEEEE
T ss_pred CcEEEEEEEECCCccccccCCCCCCCChHheEEEEE-----EECCEEEEEEEeCCcccCCCcEEEEEec
Confidence 34567778877 331111 23 77766653 5899999999999999999999998663
No 68
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=57.00 E-value=7.5 Score=29.28 Aligned_cols=42 Identities=36% Similarity=0.841 Sum_probs=32.6
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhhhhhh
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFY 44 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~ 44 (140)
+||.||.+-.+|++.+..++-. .|.. ..|..|...-.|.-+.
T Consensus 12 ~NslLQ~l~f~~~~r~~~l~h~-~c~~-e~cL~cELgfLf~ml~ 53 (295)
T PF13423_consen 12 CNSLLQVLYFIPPLRNFLLSHL-ECPK-EFCLLCELGFLFDMLD 53 (295)
T ss_pred HHHHHHHHHhCHHHHHHHHhCc-CCCc-cccHHHHHHHHHHHhh
Confidence 5999999999999999988877 4433 7889998766554443
No 69
>PF01088 Peptidase_C12: Ubiquitin carboxyl-terminal hydrolase, family 1; InterPro: IPR001578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C12 (ubiquitin C-terminal hydrolase family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. The type example is the human ubiquitin C-terminal hydrolase UCH-L1. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa and 100-200 kDa, IPR001394 from INTERPRO) []: this family are the 20-30 kDa ppeptides which includes the yeast yuh1. Yeast yuh1 protease is known to be active only against small ubiquitin conjugates, being inactive against conjugated beta-galactosidase []. A mammalian homologue, UCH (ubiquitin conjugate hydrolase), is one of the most abundant proteins in the brain []. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process, 0005622 intracellular; PDB: 1CMX_A 4DM9_A 2ETL_A 3IRT_A 3KW5_A 3IFW_A 2LEN_A 3KVF_A 2WDT_C 2WE6_B ....
Probab=40.05 E-value=26 Score=25.41 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCcEEEEcCCeeEEecccc
Q psy8602 97 GHYTTYISQHKRWFLCDDTKIKPVGITD 124 (140)
Q Consensus 97 GHY~~~~~~~~~W~~~~D~~v~~~~~~~ 124 (140)
=||+|||..+|.=|..|..+-.|+.-..
T Consensus 166 ~HFI~fV~~~G~LyELDG~k~~Pi~~G~ 193 (214)
T PF01088_consen 166 FHFIAFVPVDGHLYELDGRKSGPIDHGP 193 (214)
T ss_dssp EEEEEEEEETTEEEEEETTSSS-EEEEE
T ss_pred ccEEEEEeECCeEEEcCCCCCCCeEcCc
Confidence 3999999998899999998877775433
No 70
>KOG0944|consensus
Probab=38.48 E-value=15 Score=31.44 Aligned_cols=47 Identities=21% Similarity=0.525 Sum_probs=32.4
Q ss_pred CchhhhhhcCcHHHHHHhhcc--cccCcc--ccCcccchhhhhhhhhhcCC
Q psy8602 1 MNVILQAFSHVPLIRNFFLST--IHKCKL--DQYCFLCKIEALFNEFYNGN 47 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r--~~~~~~--~~~C~~C~~~~~f~~~~~~~ 47 (140)
|||++|+|...|......+.- +..+.. --.|..|.+.+....+.+++
T Consensus 319 lnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgk 369 (763)
T KOG0944|consen 319 LNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGK 369 (763)
T ss_pred HHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCc
Confidence 799999999999988776655 222322 25678888877665555443
No 71
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=35.09 E-value=72 Score=22.63 Aligned_cols=31 Identities=13% Similarity=0.488 Sum_probs=18.0
Q ss_pred EEEEEeecCCCCCCeEEEEEeCCC--cEEEEcC
Q psy8602 84 CSVIKHSGLNIDVGHYTTYISQHK--RWFLCDD 114 (140)
Q Consensus 84 ~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D 114 (140)
.|||+-.|+...+-|+.|++-++. +-|.||-
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 455555553344449999999987 7777764
No 72
>KOG3556|consensus
Probab=35.09 E-value=6.6 Score=32.53 Aligned_cols=33 Identities=24% Similarity=0.547 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEEeecCCCCCCeEEEEEeCCC---cEEEEcC
Q psy8602 77 EDNRYELCSVIKHSGLNIDVGHYTTYISQHK---RWFLCDD 114 (140)
Q Consensus 77 ~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~---~W~~~~D 114 (140)
....-+|+++++- ...||+++++-.+ .|..||.
T Consensus 624 ~~~~~el~~~l~~-----~t~~~~~~~~~~~~~~a~lf~~~ 659 (724)
T KOG3556|consen 624 PCQNMELFAVLCI-----ETSHYVAFVKYGKDDSAWLFFDS 659 (724)
T ss_pred hhhhHhhhhhhhc-----cccccccHHHhccchhhhhhhcc
Confidence 3455778888653 3479999999887 8886543
No 73
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=34.49 E-value=15 Score=30.54 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=27.5
Q ss_pred HHHHHHhhcccccCccccCcccchhhhhhhh----hhcCCcccccccccccc
Q psy8602 12 PLIRNFFLSTIHKCKLDQYCFLCKIEALFNE----FYNGNVEPIDLTKYRSD 59 (140)
Q Consensus 12 p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~----~~~~~~~~l~l~rf~~~ 59 (140)
.++..||+.... .|.|..|+.+.+..+ ...|++++|+..||...
T Consensus 465 ~~v~a~f~pdti----E~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~lq 512 (749)
T COG5207 465 KSVEAFFLPDTI----EWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSLQ 512 (749)
T ss_pred HHHHheECccce----eeehhhhcCcccccccchhhccCceeEEecceeecc
Confidence 345555555544 399999998554222 24566788888888543
No 74
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=33.49 E-value=26 Score=22.41 Aligned_cols=25 Identities=12% Similarity=0.531 Sum_probs=17.6
Q ss_pred CCeEEEEEeCC--C-cEEE--EcCCeeEEe
Q psy8602 96 VGHYTTYISQH--K-RWFL--CDDTKIKPV 120 (140)
Q Consensus 96 ~GHY~~~~~~~--~-~W~~--~~D~~v~~~ 120 (140)
-|.|+..+|.+ + .||. +|+..-+.+
T Consensus 13 pGeyvviARr~~~G~~Wyvg~in~~~~r~i 42 (103)
T PF14509_consen 13 PGEYVVIARRKRDGDDWYVGGINGEDARTI 42 (103)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEE-TT-EEE
T ss_pred CceEEEEEEEcCCCCCEEEEEeeCCCceEE
Confidence 58999999999 6 9994 565544444
No 75
>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle. This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.
Probab=32.87 E-value=1.2e+02 Score=20.05 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=24.9
Q ss_pred EEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccc
Q psy8602 83 LCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGIT 123 (140)
Q Consensus 83 L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~ 123 (140)
..|||+..-. .+-|.++.|..|||..+-.++.+
T Consensus 58 ~~AvIVrtkk--------~~~r~dG~~i~F~~Na~VLin~~ 90 (122)
T TIGR01067 58 VKAVIVRTKK--------GVRRKDGSYIRFDDNACVLINKN 90 (122)
T ss_pred EEEEEEEeec--------ceEeCCCCEEECCCceEEEECCC
Confidence 3688887652 24566779999999999888764
No 76
>KOG1887|consensus
Probab=29.26 E-value=27 Score=30.40 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=36.9
Q ss_pred CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEE--EEcCCeeEEe-cccccc
Q psy8602 76 LEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWF--LCDDTKIKPV-GITDVL 126 (140)
Q Consensus 76 ~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~--~~~D~~v~~~-~~~~v~ 126 (140)
.+..+|.|++++.-.. . .++|.+++..++.|. ..+|..+..+ ++.+|.
T Consensus 722 ep~t~yrLVSmv~~~e-~--~~~~~C~Aye~Nrwvs~r~~~~~~e~iG~w~dvv 772 (806)
T KOG1887|consen 722 EPNTKYRLVSMVGNHE-E--GEEYICFAYEPNRWVSLRHEDSQGEVVGDWKDVV 772 (806)
T ss_pred CcCceeEEEEEeeecc-c--cceEEEeeccCCcchhhHHHHHHhhhccchHHHH
Confidence 3568999999986553 1 689999999999777 8899888777 444443
No 77
>PTZ00204 hypothetical protein; Provisional
Probab=29.17 E-value=48 Score=21.05 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=24.1
Q ss_pred EEEEEeecCCCCCCeEEEEEeCCC--cEEEEcCCee-EEeccccc
Q psy8602 84 CSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKI-KPVGITDV 125 (140)
Q Consensus 84 ~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D~~v-~~~~~~~v 125 (140)
.|++.|.. +|||.-++-.++ .|-+-|.-.| -++..+.+
T Consensus 36 ~am~l~e~----~~hy~rw~arg~sedwdysn~fvvvc~v~leni 76 (120)
T PTZ00204 36 HAMTLIEI----SGHYHRWVARGESEDWDYSNSFVVVCAVLLENI 76 (120)
T ss_pred ceEEEEec----CCceeehhhcCCcccccccCceEEEEeehhhhh
Confidence 35555554 699999998887 8876665433 23344444
No 78
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=28.57 E-value=87 Score=20.74 Aligned_cols=34 Identities=9% Similarity=0.047 Sum_probs=25.4
Q ss_pred EEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccc
Q psy8602 82 ELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGIT 123 (140)
Q Consensus 82 ~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~ 123 (140)
-+.|||+-.-. .+.|.++.|..|||...-.++++
T Consensus 57 V~~AViVRtkk--------~~rR~DGs~i~FddNA~Viin~~ 90 (122)
T COG0093 57 VVKAVVVRTKK--------EVRRPDGSYIKFDDNAAVIINPD 90 (122)
T ss_pred eEEEEEEEeCC--------ceEcCCCCEEEeCCceEEEECCC
Confidence 46788887651 15677779999999998887654
No 79
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=28.52 E-value=91 Score=17.28 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=16.7
Q ss_pred CCCeEEEEEeCCCcEEEEcC
Q psy8602 95 DVGHYTTYISQHKRWFLCDD 114 (140)
Q Consensus 95 ~~GHY~~~~~~~~~W~~~~D 114 (140)
...|-..-+..++.|+.+|-
T Consensus 47 ~~~H~W~ev~~~~~W~~~D~ 66 (68)
T smart00460 47 WEAHAWAEVYLEGGWVPVDP 66 (68)
T ss_pred CCcEEEEEEEECCCeEEEeC
Confidence 46798888888889999984
No 80
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=28.35 E-value=1.4e+02 Score=18.03 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=30.2
Q ss_pred EEEEeec---CCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEE
Q psy8602 85 SVIKHSG---LNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137 (140)
Q Consensus 85 ~vi~H~G---~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r 137 (140)
.+.+..| ..+.-+||+.++. +.++|..|....... ..+|+.-|..+
T Consensus 18 ~v~V~vg~~~Hpm~~~HyI~wI~-----l~~~d~~v~~~~l~P--~~~P~~~F~l~ 66 (86)
T cd00524 18 DVKVKVGSVPHPMTEEHYIEWIE-----LYFGDEKVGRVELTP--GTKPEATFTVK 66 (86)
T ss_pred EEEEEECCccCCCCCCcEEEEEE-----EEECCeEEEEEECCC--CCCCEEEEEEe
Confidence 4555556 4678899998876 367776777765543 45566666544
No 81
>PRK05483 rplN 50S ribosomal protein L14; Validated
Probab=28.09 E-value=1.7e+02 Score=19.34 Aligned_cols=34 Identities=9% Similarity=0.024 Sum_probs=25.0
Q ss_pred EEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccc
Q psy8602 82 ELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGIT 123 (140)
Q Consensus 82 ~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~ 123 (140)
-..|||+..-. .+-|.++.|..|||..+-.++.+
T Consensus 57 v~~AvIVrtkk--------~~~r~dG~~i~F~dNavVLin~~ 90 (122)
T PRK05483 57 VVKAVVVRTKK--------GVRRPDGSYIRFDDNAAVLLNND 90 (122)
T ss_pred EeeEEEEEecc--------ceecCCCCEEEcCCCEEEEECCC
Confidence 45788887551 24566679999999999888754
No 82
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=27.87 E-value=1.7e+02 Score=18.64 Aligned_cols=46 Identities=13% Similarity=0.015 Sum_probs=27.3
Q ss_pred EEEeecC----CCCCCeEEEEEeCCCcEEEEcCCeeEEeccccc--cCCCcEEEEEE
Q psy8602 86 VIKHSGL----NIDVGHYTTYISQHKRWFLCDDTKIKPVGITDV--LNSEAYMLVYE 136 (140)
Q Consensus 86 vi~H~G~----~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v--~~~~aYiLfY~ 136 (140)
|-+..|. .+..+||+.++.- .++|..|..+..... ...+++.-|..
T Consensus 26 V~V~vG~~v~HPM~~~HyI~wI~l-----~~~~~~v~r~~l~p~~~~~~~P~a~F~l 77 (104)
T cd03172 26 VTVSVGKEIPHPNTTEHHIEWIEL-----YFGVYLLGRVEFTAHGGVYTKPEATFTV 77 (104)
T ss_pred EEEEECCcccCCCCCCeEEEEEEE-----EECCEEEEEEEEeCCCCCCCCCeEEEEE
Confidence 4444452 5788999988763 567767766654332 23445555543
No 83
>PHA02131 hypothetical protein
Probab=26.77 E-value=73 Score=18.14 Aligned_cols=25 Identities=24% Similarity=0.452 Sum_probs=18.1
Q ss_pred CCCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602 95 DVGHYTTYISQHKRWFLCDDTKIKPVGI 122 (140)
Q Consensus 95 ~~GHY~~~~~~~~~W~~~~D~~v~~~~~ 122 (140)
-.|||+--.. .|..|.|..|..++.
T Consensus 21 irgh~~~g~~---c~imfk~~~v~dctf 45 (70)
T PHA02131 21 IRGHYRFGIS---CWIMFKNDQVIDCTF 45 (70)
T ss_pred eccceecceE---EEEEEcCCCEEEeee
Confidence 3578853222 799999999998864
No 84
>PHA01365 hypothetical protein
Probab=25.78 E-value=70 Score=19.61 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=15.2
Q ss_pred EEcCCeeEEe--ccccccCCCcEEEE
Q psy8602 111 LCDDTKIKPV--GITDVLNSEAYMLV 134 (140)
Q Consensus 111 ~~~D~~v~~~--~~~~v~~~~aYiLf 134 (140)
+|+|+.|..+ .+.+..-..-||.|
T Consensus 15 ~fkdskieki~~lps~~dv~~KYiif 40 (91)
T PHA01365 15 CFKDSSIDVIFMSCNNLSPHKKYMII 40 (91)
T ss_pred HhCCCceEEEEEecCCCCccccEEEE
Confidence 5788888887 34343334567775
No 85
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=24.94 E-value=89 Score=28.62 Aligned_cols=34 Identities=24% Similarity=0.355 Sum_probs=25.8
Q ss_pred CCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcC
Q psy8602 77 EDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDD 114 (140)
Q Consensus 77 ~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D 114 (140)
....=-|.|| |....+||++-.++..+ ++|.||.
T Consensus 47 qgfmpvltgv----~p~~~sghwimlikg~gn~y~lfdp 81 (1439)
T PF12252_consen 47 QGFMPVLTGV----SPRQDSGHWIMLIKGQGNQYYLFDP 81 (1439)
T ss_pred cCCceeecCc----CCCCcCceeEEEEEcCCCceEEecc
Confidence 3344455555 55678999999999998 9999985
No 86
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=24.72 E-value=56 Score=21.02 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=12.2
Q ss_pred CCCCeEEEEEeCCC
Q psy8602 94 IDVGHYTTYISQHK 107 (140)
Q Consensus 94 ~~~GHY~~~~~~~~ 107 (140)
-++|+|++-+|+..
T Consensus 80 eDSG~Y~C~~rN~t 93 (104)
T cd05896 80 QDSGLYTCVLRNST 93 (104)
T ss_pred hhCeEEEEEECCCC
Confidence 47899999999876
No 87
>PRK09750 hypothetical protein; Provisional
Probab=24.51 E-value=1.4e+02 Score=17.15 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=21.0
Q ss_pred CcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEe
Q psy8602 79 NRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPV 120 (140)
Q Consensus 79 ~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~ 120 (140)
.+|.+.|.|---|-+ .-.|..|.|...+.-
T Consensus 2 ykY~I~Ati~KpGg~------------P~~W~r~s~~~mtk~ 31 (64)
T PRK09750 2 YMYKITATIEKEGGT------------PTNWTRYSKSKLTKS 31 (64)
T ss_pred ceeEEEEEEECCCCC------------ccceeEecCCcCCHH
Confidence 468888888877721 127999999876543
No 88
>KOG3646|consensus
Probab=23.93 E-value=1.1e+02 Score=25.14 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=32.9
Q ss_pred CCcEEEEEEEEeecCCC---CCCeEEEEEeCCCcEEEEcCCeeE
Q psy8602 78 DNRYELCSVIKHSGLNI---DVGHYTTYISQHKRWFLCDDTKIK 118 (140)
Q Consensus 78 ~~~Y~L~~vi~H~G~~~---~~GHY~~~~~~~~~W~~~~D~~v~ 118 (140)
+..|.--.|+.|.| +. --|=+.+-|+-+-.|+-|||....
T Consensus 124 DsTy~tN~Vv~~tG-~v~~vPPGIfk~sCkiDItwFPFD~Q~C~ 166 (486)
T KOG3646|consen 124 DSTYKTNYVVYSTG-SVLWVPPGIFKSSCKIDITWFPFDDQVCY 166 (486)
T ss_pred CCcceeeEEEccCC-eeeecCCceeeeeeEEEEEEecccccEEE
Confidence 57899999999999 53 467788888887799999997653
No 89
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=23.58 E-value=2.1e+02 Score=18.26 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=19.4
Q ss_pred EEEEEEEEeecCCCCCCeEEEEEeCCCcEE
Q psy8602 81 YELCSVIKHSGLNIDVGHYTTYISQHKRWF 110 (140)
Q Consensus 81 Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~ 110 (140)
|.-.=-.+..- ...+|+|+..+++++.|-
T Consensus 63 Y~S~L~L~Rlk-~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 63 YVSELHLTRLK-GTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEEEEEEeecC-hhhCcEEEEEEECCCCeE
Confidence 43333334444 678999999999987554
No 90
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=21.86 E-value=67 Score=19.40 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=12.2
Q ss_pred CCCCeEEEEEeCCC-cE
Q psy8602 94 IDVGHYTTYISQHK-RW 109 (140)
Q Consensus 94 ~~~GHY~~~~~~~~-~W 109 (140)
.++|+|.|..+... .|
T Consensus 63 ~~~G~Y~C~~~~~~~~~ 79 (91)
T cd05751 63 EHAGRYRCYYRSGVALW 79 (91)
T ss_pred hHCEEEEEEEECCCCcc
Confidence 46899999998863 44
No 91
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=21.33 E-value=1.4e+02 Score=19.99 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=20.4
Q ss_pred CCcEEEEEEEEeecCCCCCCeEEEEEeC
Q psy8602 78 DNRYELCSVIKHSGLNIDVGHYTTYISQ 105 (140)
Q Consensus 78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~ 105 (140)
...=+.+|.|+-......+-||++||-.
T Consensus 80 ~~~~dhFgFIcrEs~~~~~~~f~CyVFq 107 (129)
T cd01269 80 IKHVDHFGFICRESPEPGLSQYICYVFQ 107 (129)
T ss_pred CCCcceEEEEeccCCCCCcceEEEEEEE
Confidence 3456789999988744445699999864
No 92
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=21.26 E-value=52 Score=14.79 Aligned_cols=11 Identities=27% Similarity=0.857 Sum_probs=8.4
Q ss_pred cEEEEcCCeeE
Q psy8602 108 RWFLCDDTKIK 118 (140)
Q Consensus 108 ~W~~~~D~~v~ 118 (140)
+|+.+|...|.
T Consensus 11 kwfnidnkivd 21 (24)
T PF08053_consen 11 KWFNIDNKIVD 21 (24)
T ss_pred eeEeccCeecc
Confidence 79999887653
No 93
>PTZ00054 60S ribosomal protein L23; Provisional
Probab=21.21 E-value=1.3e+02 Score=20.43 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=17.5
Q ss_pred EEeCCCcEEEEcCCeeEEeccc
Q psy8602 102 YISQHKRWFLCDDTKIKPVGIT 123 (140)
Q Consensus 102 ~~~~~~~W~~~~D~~v~~~~~~ 123 (140)
+.|.++.|+.|||..+-.++.+
T Consensus 87 ~rR~dGs~i~F~dNA~VLin~~ 108 (139)
T PTZ00054 87 WRRKDGVFIYFEDNAGVIVNPK 108 (139)
T ss_pred eEcCCCcEEEeCCcEEEEECCC
Confidence 4556669999999999888754
Done!