Query psy8602
Match_columns 140
No_of_seqs 181 out of 1743
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 23:01:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8602.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8602hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 7.7E-30 2.6E-34 196.0 8.8 132 7-139 210-359 (367)
2 3i3t_A Ubiquitin carboxyl-term 100.0 9E-30 3.1E-34 193.8 7.1 131 8-139 206-351 (355)
3 3nhe_A Ubiquitin carboxyl-term 100.0 5.6E-29 1.9E-33 188.9 11.2 130 9-139 197-343 (348)
4 2gfo_A Ubiquitin carboxyl-term 100.0 7.6E-29 2.6E-33 192.7 7.4 129 10-139 250-396 (396)
5 1nb8_A Ubiquitin carboxyl-term 99.9 1.2E-27 4E-32 183.4 7.8 128 11-139 154-315 (353)
6 3mhs_A Ubiquitin carboxyl-term 99.9 4.2E-27 1.4E-31 186.3 7.6 129 10-140 321-475 (476)
7 1vjv_A Ubiquitin carboxyl-term 99.9 4.7E-27 1.6E-31 183.1 7.7 63 78-140 343-415 (415)
8 2ayn_A Ubiquitin carboxyl-term 99.9 4.8E-27 1.7E-31 182.1 5.8 112 29-140 210-395 (404)
9 2f1z_A Ubiquitin carboxyl-term 99.9 1.5E-26 5.1E-31 185.3 8.4 128 11-139 323-484 (522)
10 3ihp_A Ubiquitin carboxyl-term 99.9 7.4E-23 2.5E-27 171.7 7.7 59 79-139 795-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 98.3 4.2E-07 1.4E-11 69.5 4.4 33 78-115 274-309 (374)
12 2y6e_A Ubiquitin carboxyl-term 96.8 0.00038 1.3E-08 52.8 1.7 56 1-56 20-82 (367)
13 3nhe_A Ubiquitin carboxyl-term 96.5 0.00074 2.5E-08 50.4 1.2 44 1-44 21-69 (348)
14 1vjv_A Ubiquitin carboxyl-term 96.2 0.001 3.5E-08 51.3 0.9 56 1-56 36-100 (415)
15 2gfo_A Ubiquitin carboxyl-term 96.1 0.0008 2.7E-08 51.8 -0.3 47 1-47 74-127 (396)
16 3mhs_A Ubiquitin carboxyl-term 96.1 0.0015 5.2E-08 51.2 1.1 45 1-45 153-201 (476)
17 3i3t_A Ubiquitin carboxyl-term 96.1 0.0013 4.4E-08 49.2 0.6 47 1-47 15-65 (355)
18 1nb8_A Ubiquitin carboxyl-term 95.9 0.0033 1.1E-07 47.5 2.1 45 1-45 18-62 (353)
19 2ayn_A Ubiquitin carboxyl-term 95.9 0.0013 4.4E-08 50.4 -0.3 46 1-46 26-76 (404)
20 2f1z_A Ubiquitin carboxyl-term 95.2 0.0096 3.3E-07 47.3 2.7 45 1-45 187-231 (522)
21 3ihp_A Ubiquitin carboxyl-term 94.9 0.01 3.5E-07 50.2 2.1 46 1-46 356-406 (854)
22 3mp2_A Non-structural protein 83.6 2.1 7.1E-05 30.2 5.0 35 85-122 162-196 (211)
23 1qmy_A Protease, leader protea 82.2 1.5 5.2E-05 29.0 3.6 37 82-122 108-144 (167)
24 2fe8_A PP1AB, ORF1AB, replicas 71.6 5.2 0.00018 29.9 4.4 37 84-122 260-296 (315)
25 2oxg_Z SOXZ protein; immunoglo 62.2 25 0.00086 21.7 5.9 54 79-137 18-80 (108)
26 3o65_A Putative ataxin-3-like 57.2 21 0.00072 24.6 4.9 53 82-139 109-169 (191)
27 1v8h_A Sulfur oxidation protei 52.5 38 0.0013 20.8 6.8 55 78-137 16-79 (107)
28 2ww6_A Fibritin, T4 fibritin; 44.8 9 0.00031 17.6 1.0 14 101-114 12-25 (27)
29 4ekf_A Adenain; alpha and beta 32.5 52 0.0018 22.8 3.7 31 84-114 40-72 (204)
30 2wdt_A Ubiquitin carboxyl-term 31.8 26 0.0009 24.8 2.3 26 96-121 162-187 (232)
31 3rii_A Ubiquitin carboxyl-term 31.4 24 0.00083 25.0 2.0 26 96-121 167-192 (233)
32 1cmx_A Protein (ubiquitin YUH1 30.9 28 0.00097 24.7 2.3 26 95-120 163-189 (235)
33 4dm9_A Ubiquitin carboxyl-term 30.9 25 0.00086 24.9 2.0 27 95-121 163-189 (228)
34 1xd3_A Ubiquitin carboxyl-term 30.1 26 0.0009 24.8 2.0 26 96-121 167-192 (230)
35 1flt_X FLT-1, VGR1, FMS-like t 25.4 81 0.0028 18.8 3.4 35 79-113 53-88 (95)
36 3ihr_A Ubiquitin carboxyl-term 24.3 37 0.0013 25.4 2.0 26 96-121 162-187 (328)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=99.96 E-value=7.7e-30 Score=196.01 Aligned_cols=132 Identities=21% Similarity=0.399 Sum_probs=106.1
Q ss_pred hhcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCC---------C-CCCCcccc
Q psy8602 7 AFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSE---------D-EDEGVAPY 72 (140)
Q Consensus 7 ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~---------~-~~~~~~~~ 72 (140)
..+...+|..|+..+.+..++.|.|+.|+... .......|++++|||+||.++.... + +.+++.++
T Consensus 210 ~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 289 (367)
T 2y6e_A 210 TVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEF 289 (367)
T ss_dssp CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGG
T ss_pred CCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhh
Confidence 34566788888888888777779999998632 3444568899999999997654322 2 23555665
Q ss_pred ccCC--CCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602 73 ELNL--EDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 73 ~~~~--~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~ 139 (140)
.... .+..|+|+|||+|.| +.++|||+||+|.. +.||.|||+.|+++++++|.+.+||||||+|++
T Consensus 290 ~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 359 (367)
T 2y6e_A 290 VCNLSARPYVYDLIAVSNHYG-AMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRD 359 (367)
T ss_dssp BSCSSSCCCEEEEEEEEEEEC-SSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECC
T ss_pred ccCCCCCCceEEEEEEeecCC-CCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcC
Confidence 5432 467999999999999 79999999999986 499999999999999999999999999999986
No 2
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.96 E-value=9e-30 Score=193.79 Aligned_cols=131 Identities=19% Similarity=0.341 Sum_probs=103.9
Q ss_pred hcCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCCCC----------CCccccc
Q psy8602 8 FSHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSEDED----------EGVAPYE 73 (140)
Q Consensus 8 l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~~~----------~~~~~~~ 73 (140)
.+..++|..|+..+....++.+.|+.|+... .......|++++|||+||..+.....+. +++.++.
T Consensus 206 ~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~~~ 285 (355)
T 3i3t_A 206 VSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGDFA 285 (355)
T ss_dssp CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGGGB
T ss_pred cCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchhhc
Confidence 3556778888888888777779999998643 2334467899999999998664333332 3444443
Q ss_pred cC-CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602 74 LN-LEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 74 ~~-~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~ 139 (140)
.. .+...|+|+|||+|.| +.++|||+||+|..+.||.|||+.|+++++++|.+.+||||||+|++
T Consensus 286 ~~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~ 351 (355)
T 3i3t_A 286 SDKAGSPVYQLYALCNHSG-SVHYGHYTALCRCQTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQ 351 (355)
T ss_dssp C----CCEEEEEEEEEEEE-ETTEEEEEEEEEETTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC-
T ss_pred cCCCCCcceEEEEEEEecC-CCCCCeEEEEEEcCCeEEEEcCCCcEECCHHHcCCCCcEEEEEEecc
Confidence 32 2456899999999999 89999999999999999999999999999999999999999999975
No 3
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=99.96 E-value=5.6e-29 Score=188.93 Aligned_cols=130 Identities=21% Similarity=0.363 Sum_probs=103.9
Q ss_pred cCcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCCCCCC----------CCcccccc
Q psy8602 9 SHVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCSEDED----------EGVAPYEL 74 (140)
Q Consensus 9 ~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~~~~~----------~~~~~~~~ 74 (140)
+...+|..|+..+....++.+.|+.|+... .......|++++|||+||..+.....+. +++.++..
T Consensus 197 sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~~~~ 276 (348)
T 3nhe_A 197 TLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLREFAS 276 (348)
T ss_dssp EHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGGGBC
T ss_pred CHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhhhcC
Confidence 445678888888888777779999998643 2334568899999999997654333333 34444433
Q ss_pred C-CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602 75 N-LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 75 ~-~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~ 139 (140)
. .....|+|+|||+|.| +.++|||+||+|.. +.||.|||+.|+++++++|.+.+||||||+|++
T Consensus 277 ~~~~~~~Y~L~avv~H~G-~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~ 343 (348)
T 3nhe_A 277 ENTNHAVYNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELAS 343 (348)
T ss_dssp TTCCCCEEEEEEEEEEEE-CSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC
T ss_pred CCCCCCcEEEEEEEEccC-CCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecC
Confidence 2 3567899999999999 89999999999984 499999999999999999999999999999986
No 4
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.95 E-value=7.6e-29 Score=192.69 Aligned_cols=129 Identities=26% Similarity=0.406 Sum_probs=104.8
Q ss_pred CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccCCC---------CC-CCCCccccccC
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDYCS---------ED-EDEGVAPYELN 75 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~~~---------~~-~~~~~~~~~~~ 75 (140)
...+|..|+..+.+..++.|.|+.|+..+ .......|++++|||+||..+... .+ +.+|+.++...
T Consensus 250 L~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~ 329 (396)
T 2gfo_A 250 LQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIG 329 (396)
T ss_dssp HHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGGBCS
T ss_pred HHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhccccccccC
Confidence 34678888888888777779999998643 344456889999999999765422 22 34666676654
Q ss_pred C--CCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602 76 L--EDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 76 ~--~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~ 139 (140)
+ ....|+|+|||+|.| ++++|||+||+|.. +.||.|||+.|+++++++|.+.+||||||+|++
T Consensus 330 ~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 330 PKNNLKKYNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp CCSSCCCBEEEEEEEEES-CTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred CCCCCceEEEEEEEEecC-CCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 2 357899999999999 99999999999986 499999999999999999999999999999874
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.94 E-value=1.2e-27 Score=183.41 Aligned_cols=128 Identities=18% Similarity=0.246 Sum_probs=97.9
Q ss_pred cHHHHHHhhcccccCccccCcccchhh---hhhhhhhcCCccccccccccccCC-----------CCCCCCCccccccC-
Q psy8602 11 VPLIRNFFLSTIHKCKLDQYCFLCKIE---ALFNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYELN- 75 (140)
Q Consensus 11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~---~~f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~~- 75 (140)
.++|..|+..+.+..++.|.|..|... +.......|++++|||+||.++.. ..+..+++.++...
T Consensus 154 ~~~L~~~~~~E~l~~~~~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~ 233 (353)
T 1nb8_A 154 FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT 233 (353)
T ss_dssp HHHHHHHTCCEEECTTTCEECGGGCEECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSC
T ss_pred HHHHHHhhCccccCCCccccCCcCccEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhccc
Confidence 456788888888877667899998653 234445688999999999976431 22334455555543
Q ss_pred --CCCCcEEEEEEEEeecCCCCCCeEEEEEeC--CCcEEEEcCCeeEEeccccccC---------------CCcEEEEEE
Q psy8602 76 --LEDNRYELCSVIKHSGLNIDVGHYTTYISQ--HKRWFLCDDTKIKPVGITDVLN---------------SEAYMLVYE 136 (140)
Q Consensus 76 --~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~--~~~W~~~~D~~v~~~~~~~v~~---------------~~aYiLfY~ 136 (140)
..+..|+|+|||+|.| +.++|||+||+|. .+.||.|||+.|+++++++|.. .+||||||+
T Consensus 234 ~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~ 312 (353)
T 1nb8_A 234 DPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYI 312 (353)
T ss_dssp CTTSCCEEEEEEEEEEES-STTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEE
T ss_pred CCCCCceEEEEEEEEEeC-CCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEE
Confidence 2467899999999999 7899999999996 3499999999999999988763 579999999
Q ss_pred Eec
Q psy8602 137 KKV 139 (140)
Q Consensus 137 r~~ 139 (140)
|++
T Consensus 313 r~~ 315 (353)
T 1nb8_A 313 RES 315 (353)
T ss_dssp ETT
T ss_pred ECc
Confidence 975
No 6
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.94 E-value=4.2e-27 Score=186.29 Aligned_cols=129 Identities=19% Similarity=0.360 Sum_probs=100.1
Q ss_pred CcHHHHHHhhcccccCccccCcccchhhh----hhhhhhcCCccccccccccccC----------CCCCCCCCccccccC
Q psy8602 10 HVPLIRNFFLSTIHKCKLDQYCFLCKIEA----LFNEFYNGNVEPIDLTKYRSDY----------CSEDEDEGVAPYELN 75 (140)
Q Consensus 10 ~~p~L~~~~l~r~~~~~~~~~C~~C~~~~----~f~~~~~~~~~~l~l~rf~~~~----------~~~~~~~~~~~~~~~ 75 (140)
...+|..|+..+.... .++.|+.|.... .......|++++|+|+||..+. ...+..+++.++...
T Consensus 321 l~~~L~~~~~~E~l~~-~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~~~~ 399 (476)
T 3mhs_A 321 LYECLDSFHKKEQLKD-FNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNYCST 399 (476)
T ss_dssp HHHHHHHHHCCEECSS-CCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGGBSC
T ss_pred HHHHHHHhcChhhccC-CCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhhcCc
Confidence 3456777887777753 338999998643 2334468899999999997532 122334455555432
Q ss_pred -----------CCCCcEEEEEEEEeecCCCCCCeEEEEEeCCC-cEEEEcCCeeEEeccccccCCCcEEEEEEEecC
Q psy8602 76 -----------LEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTKIKPVGITDVLNSEAYMLVYEKKVL 140 (140)
Q Consensus 76 -----------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~-~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~l 140 (140)
..+..|+|+|||+|.| +.++|||++|+|..+ +||.|||+.|+++++++|...+||||||+|+++
T Consensus 400 ~~~~~~~~~~~~~~~~Y~L~avv~H~G-~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~ 475 (476)
T 3mhs_A 400 KEKDKHSENGKVPDIIYELIGIVSHKG-TVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQV 475 (476)
T ss_dssp CBCCC--CCCBCCCEEEEEEEEEEEEE-CSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEEE
T ss_pred ccccccccccCCCCCcEEEEEEEEeCC-CCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEecC
Confidence 2346799999999999 899999999999854 999999999999999999999999999999864
No 7
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.94 E-value=4.7e-27 Score=183.15 Aligned_cols=63 Identities=30% Similarity=0.582 Sum_probs=58.2
Q ss_pred CCcEEEEEEEEeecCCCCCCeEEEEEeC---CCcEEEEcCCeeEEeccccccCCC-------cEEEEEEEecC
Q psy8602 78 DNRYELCSVIKHSGLNIDVGHYTTYISQ---HKRWFLCDDTKIKPVGITDVLNSE-------AYMLVYEKKVL 140 (140)
Q Consensus 78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~---~~~W~~~~D~~v~~~~~~~v~~~~-------aYiLfY~r~~l 140 (140)
+..|+|+|||+|.|.++++|||+||+|. .+.||.|||+.|+++++++|.... ||||||+|++|
T Consensus 343 ~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~l 415 (415)
T 1vjv_A 343 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL 415 (415)
T ss_dssp SSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred CceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecCC
Confidence 4789999999999977999999999999 459999999999999999998765 99999999986
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.93 E-value=4.8e-27 Score=182.09 Aligned_cols=112 Identities=18% Similarity=0.226 Sum_probs=86.3
Q ss_pred cCcccchhh----hhhhhhhcCCccccccccccccCC-----------CCCCCCCccccccC------------------
Q psy8602 29 QYCFLCKIE----ALFNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYELN------------------ 75 (140)
Q Consensus 29 ~~C~~C~~~----~~f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~~------------------ 75 (140)
+.|..|... +.......|++++|||+||.++.. ..+..+++.+|...
T Consensus 210 ~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~ 289 (404)
T 2ayn_A 210 KQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLED 289 (404)
T ss_dssp CEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTTTTGGGTCTTC
T ss_pred ecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcchhhhHHhhhhc
Confidence 678888753 234445688999999999976532 12233445444321
Q ss_pred ---------------------------------CCCCcEEEEEEEEeecCCCCCCeEEEEEeC-CCcEEEEcCCeeEEec
Q psy8602 76 ---------------------------------LEDNRYELCSVIKHSGLNIDVGHYTTYISQ-HKRWFLCDDTKIKPVG 121 (140)
Q Consensus 76 ---------------------------------~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~W~~~~D~~v~~~~ 121 (140)
..+..|+|+|||+|.|.++++|||+||+|. .+.||.|||+.|++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~~~~~W~~fnD~~V~~v~ 369 (404)
T 2ayn_A 290 KKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVT 369 (404)
T ss_dssp ----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEEETTEEEEEBTTBCCCBC
T ss_pred ccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEECCCCeEEEeecccceecC
Confidence 234789999999999976999999999998 6699999999999999
Q ss_pred cccccCCC-------cEEEEEEEecC
Q psy8602 122 ITDVLNSE-------AYMLVYEKKVL 140 (140)
Q Consensus 122 ~~~v~~~~-------aYiLfY~r~~l 140 (140)
+++|.... ||||||+|+++
T Consensus 370 ~~~v~~~~~g~~~~~aYiLfY~r~~~ 395 (404)
T 2ayn_A 370 PEDILRLSGGGDWHIAYVLLYGPRRV 395 (404)
T ss_dssp HHHHGGGGSSSSSCEEEEEEEECC--
T ss_pred HHHHHhhhCCCCCceEEEEEEEecCC
Confidence 99998765 99999999864
No 9
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.93 E-value=1.5e-26 Score=185.25 Aligned_cols=128 Identities=18% Similarity=0.247 Sum_probs=100.7
Q ss_pred cHHHHHHhhcccccCccccCcccchhhh---hhhhhhcCCccccccccccccCC-----------CCCCCCCccccccC-
Q psy8602 11 VPLIRNFFLSTIHKCKLDQYCFLCKIEA---LFNEFYNGNVEPIDLTKYRSDYC-----------SEDEDEGVAPYELN- 75 (140)
Q Consensus 11 ~p~L~~~~l~r~~~~~~~~~C~~C~~~~---~f~~~~~~~~~~l~l~rf~~~~~-----------~~~~~~~~~~~~~~- 75 (140)
.++|..|+..+.+..++.|.|..|.... .......|++++|||+||.++.. ..+..+++.++...
T Consensus 323 ~~~L~~~~~~E~l~~~n~~~C~~c~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~ 402 (522)
T 2f1z_A 323 FESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT 402 (522)
T ss_dssp HHHHHHHTCEEEECTTSCBCCGGGCSBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSC
T ss_pred hHHHHHhhceeecCCcceeecCcCCccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccc
Confidence 4678888888888777778999987532 34445688999999999976432 23344566666543
Q ss_pred --CCCCcEEEEEEEEeecCCCCCCeEEEEEeCC--CcEEEEcCCeeEEeccccccC---------------CCcEEEEEE
Q psy8602 76 --LEDNRYELCSVIKHSGLNIDVGHYTTYISQH--KRWFLCDDTKIKPVGITDVLN---------------SEAYMLVYE 136 (140)
Q Consensus 76 --~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~--~~W~~~~D~~v~~~~~~~v~~---------------~~aYiLfY~ 136 (140)
..+..|+|+|||+|.| +.++|||+||+|.. +.||.|||+.|++++.++|.. .+||||||+
T Consensus 403 ~~~~~~~Y~L~avv~H~G-~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~ 481 (522)
T 2f1z_A 403 DPKDPANYILHAVLVHSG-DNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYI 481 (522)
T ss_dssp CTTSCCEEEEEEEEEEEC-SSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEE
T ss_pred cCCCCcEEEEEEEEEecc-cCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEE
Confidence 2467899999999999 78999999999963 499999999999999988863 579999999
Q ss_pred Eec
Q psy8602 137 KKV 139 (140)
Q Consensus 137 r~~ 139 (140)
|++
T Consensus 482 r~~ 484 (522)
T 2f1z_A 482 RES 484 (522)
T ss_dssp ETT
T ss_pred ECC
Confidence 975
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.87 E-value=7.4e-23 Score=171.67 Aligned_cols=59 Identities=25% Similarity=0.555 Sum_probs=53.7
Q ss_pred CcEEEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEEec
Q psy8602 79 NRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKKV 139 (140)
Q Consensus 79 ~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r~~ 139 (140)
..|+|+|||+|.|.+.++|||+||+|..++||.|||+.|+++ ++.....||||||+|.+
T Consensus 795 ~~Y~L~avi~H~G~~~~~GHY~~~~~~~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 795 GKYQLFAFISHMGTSTMCGHYVCHIKKEGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp SEEEEEEEEEEESSCSSCCEEEEEEEETTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred ceEEEEEEEEeecCCCCCcCeEEEEEeCCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 379999999999988889999999999999999999999997 45567899999999974
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=98.32 E-value=4.2e-07 Score=69.54 Aligned_cols=33 Identities=24% Similarity=0.577 Sum_probs=28.0
Q ss_pred CCcEEEEEEEEeecCCCCCCeEEEEEeCC---CcEEEEcCC
Q psy8602 78 DNRYELCSVIKHSGLNIDVGHYTTYISQH---KRWFLCDDT 115 (140)
Q Consensus 78 ~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~---~~W~~~~D~ 115 (140)
...|+|+|||+ +++|||+||||.+ +.|+.||-.
T Consensus 274 sg~yeL~aVlt-----adsgHYvafVK~~~~d~~W~~FDsm 309 (374)
T 2vhf_A 274 CQNMELFAVLC-----IETSHYVAFVKYGKDDSAWLFFDSM 309 (374)
T ss_dssp -CCEEEEEEEE-----EETTEEEEEEECSSSTTCEEEEETT
T ss_pred ceeEEEEEEEE-----ccCCceEEEEEecCCCCCeEEEech
Confidence 37899999999 6689999999983 399999974
No 12
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=96.81 E-value=0.00038 Score=52.77 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=37.8
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCcc-------ccCcccchhhhhhhhhhcCCccccccccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKL-------DQYCFLCKIEALFNEFYNGNVEPIDLTKY 56 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~-------~~~C~~C~~~~~f~~~~~~~~~~l~l~rf 56 (140)
|||+||||.++|++++++++.....+. ...+..+.+...+..++.+....+.+..|
T Consensus 20 mNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~ 82 (367)
T 2y6e_A 20 MNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMF 82 (367)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHH
T ss_pred HHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHH
Confidence 799999999999999999876543211 12345566677777777665444444444
No 13
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=96.46 E-value=0.00074 Score=50.38 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=32.8
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCcc-----ccCcccchhhhhhhhhh
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKL-----DQYCFLCKIEALFNEFY 44 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~-----~~~C~~C~~~~~f~~~~ 44 (140)
|||+||||.++|++++++++....... ...|..|.+...+..++
T Consensus 21 ~NsvLQ~L~~~~~~r~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~ 69 (348)
T 3nhe_A 21 MNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIW 69 (348)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTGGGGTSCSSCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHhcchhhHhhccCCCcccHHHHHHHHHHHHHH
Confidence 799999999999999999886443211 24566677777777666
No 14
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=96.25 E-value=0.001 Score=51.25 Aligned_cols=56 Identities=16% Similarity=0.213 Sum_probs=38.6
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCccc---------cCcccchhhhhhhhhhcCCccccccccc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKLD---------QYCFLCKIEALFNEFYNGNVEPIDLTKY 56 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~---------~~C~~C~~~~~f~~~~~~~~~~l~l~rf 56 (140)
|||+||||.++|+++++++.-....... ..|..|.+.+.|..++......+.+..|
T Consensus 36 mNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~~~~~v~p~~~ 100 (415)
T 1vjv_A 36 LNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVL 100 (415)
T ss_dssp HHHHHHHHHHSHHHHHHHHTCCGGGCCSCTTSTTHHHHHHHHHHHHHHHHHHHCC-CCEECCHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhcccccccCCcccccccchhHHHHHHHHHHHHHhcCCCCccCHHHH
Confidence 7999999999999999998754332111 3477888888888777654334444433
No 15
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=96.13 E-value=0.0008 Score=51.81 Aligned_cols=47 Identities=17% Similarity=0.356 Sum_probs=30.7
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCcc-------ccCcccchhhhhhhhhhcCC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKL-------DQYCFLCKIEALFNEFYNGN 47 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~-------~~~C~~C~~~~~f~~~~~~~ 47 (140)
|||+||||.++|+|++|++......+. ...+..+.+...+..++.+.
T Consensus 74 mNSvLQ~L~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 127 (396)
T 2gfo_A 74 MNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQ 127 (396)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTHHHHCCTTCTTSCTTHHHHHHHHHHHHHHHSC
T ss_pred HhHHHHHhhCCHHHHHHHHcCcchhhhcccCCCCcccHHHHHHHHHHHHHHcCC
Confidence 799999999999999999886532111 02233444555555555544
No 16
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=96.09 E-value=0.0015 Score=51.24 Aligned_cols=45 Identities=31% Similarity=0.634 Sum_probs=35.1
Q ss_pred CchhhhhhcCcHHHHHHhhcccccC----ccccCcccchhhhhhhhhhc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKC----KLDQYCFLCKIEALFNEFYN 45 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~----~~~~~C~~C~~~~~f~~~~~ 45 (140)
|||+||||.++|+++++++...+.. .....|..|.+.+.+..++.
T Consensus 153 mNSvLQ~L~~~p~fr~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 201 (476)
T 3mhs_A 153 MSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSCALDKIVHELYG 201 (476)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTHHHHHCSSCCTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCHHHHHHHHhcchhhhccCCCcccchHHHHHHHHHHHhh
Confidence 7999999999999999999765431 12267888888888776655
No 17
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=96.05 E-value=0.0013 Score=49.20 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=32.5
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCc----cccCcccchhhhhhhhhhcCC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCK----LDQYCFLCKIEALFNEFYNGN 47 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~----~~~~C~~C~~~~~f~~~~~~~ 47 (140)
|||+||||.++|++++++++...... ....|..+.+...+..++.+.
T Consensus 15 ~NSvLQ~L~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~ 65 (355)
T 3i3t_A 15 LNAVLQCLSSTRPLRDFCLRRDFRQEVPGGGRAQELTEAFADVIGALWHPD 65 (355)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTHHHHC------CHHHHHHHHHHHHTSSCS
T ss_pred HHHHHHHHhCCHHHHHHHHhchHHHhcCCCCchhHHHHHHHHHHHHHhcCC
Confidence 79999999999999999987543211 113456666677777666543
No 18
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=95.88 E-value=0.0033 Score=47.55 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=32.1
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhhhhhhc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYN 45 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~ 45 (140)
|||+||||.++|+++.+++.-.........|..|.+.+.|..++.
T Consensus 18 mNSvLQ~L~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~ 62 (353)
T 1nb8_A 18 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQH 62 (353)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSCCTTSCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHhCCCCCCcccccHHHHHHHHHHHHhh
Confidence 799999999999999998653222112245677777777766654
No 19
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=95.85 E-value=0.0013 Score=50.36 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=34.1
Q ss_pred CchhhhhhcCcHHHHHHhhccccc--Cc---cccCcccchhhhhhhhhhcC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHK--CK---LDQYCFLCKIEALFNEFYNG 46 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~--~~---~~~~C~~C~~~~~f~~~~~~ 46 (140)
|||+||||.++|+++.+++.-... .. ....|..|.+...|..++.+
T Consensus 26 mNSvLQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lf~~l~~~ 76 (404)
T 2ayn_A 26 MNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKT 76 (404)
T ss_dssp HHHHHHHHHTCHHHHHHHHTCCCCC------CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCHHHHHHHHhcccccccCCCCCcccHHHHHHHHHHHHHhcC
Confidence 799999999999999999875432 11 11457788888888777653
No 20
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=95.20 E-value=0.0096 Score=47.34 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=31.9
Q ss_pred CchhhhhhcCcHHHHHHhhcccccCccccCcccchhhhhhhhhhc
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYN 45 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~~~~~~~C~~C~~~~~f~~~~~ 45 (140)
|||+||||.++|+++.+++.-.........|..|.+.+.|..+..
T Consensus 187 mNSvLQ~L~~~~~fr~~~~~~~~~~~~~~~~~~~~l~~lf~~l~~ 231 (522)
T 2f1z_A 187 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQH 231 (522)
T ss_dssp HHHHHHHHHTCHHHHHHHHTCCCCSSCTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHhhccccCCcccchHHHHHHHHHHHHhc
Confidence 799999999999999988653222112245667777777776654
No 21
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=94.89 E-value=0.01 Score=50.15 Aligned_cols=46 Identities=15% Similarity=0.270 Sum_probs=34.8
Q ss_pred CchhhhhhcCcHHHHHHhhccccc-----CccccCcccchhhhhhhhhhcC
Q psy8602 1 MNVILQAFSHVPLIRNFFLSTIHK-----CKLDQYCFLCKIEALFNEFYNG 46 (140)
Q Consensus 1 ~n~~lQ~l~~~p~L~~~~l~r~~~-----~~~~~~C~~C~~~~~f~~~~~~ 46 (140)
|||+||||.++|+++.+++..... ......|..|.+.+.+..++++
T Consensus 356 mNSvLQ~L~~~p~fr~~ll~~~~~~~~~~~~~~~~~l~~~l~~L~~~L~s~ 406 (854)
T 3ihp_A 356 LNSVVQVLFSIPDFQRKYVDKLEKIFQNAPTDPTQDFSTQVAKLGHGLLSG 406 (854)
T ss_dssp HHHHHHHHTTSHHHHHHHTTTHHHHHHHCCSCGGGCHHHHHHHHHHHHHSC
T ss_pred hhHHHHHHhCcHHHHHHHHhhhhhhhccccCCccccHHHHHHHHHHHHhcc
Confidence 799999999999999999864321 1122567888888888777654
No 22
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=83.56 E-value=2.1 Score=30.19 Aligned_cols=35 Identities=26% Similarity=0.351 Sum_probs=28.1
Q ss_pred EEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602 85 SVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI 122 (140)
Q Consensus 85 ~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~ 122 (140)
+-++-.| +.++|||+.+....+ +.+|...+.+++.
T Consensus 162 ~~~vF~G-~~~~GHY~~~~~~~~--~~vDG~~~~~~~~ 196 (211)
T 3mp2_A 162 MHAVYTG-TTQNGHYMVDDIEHG--YCVDGMGIKPLKK 196 (211)
T ss_dssp EEEEEES-CTTTCEEEEEETTTT--EEEETTEEECCCC
T ss_pred eEEEEEc-CCCCceEEEEecccc--eEEeCCceeEccc
Confidence 3444489 899999999977665 8999999998863
No 23
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=82.21 E-value=1.5 Score=28.99 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=29.7
Q ss_pred EEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602 82 ELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI 122 (140)
Q Consensus 82 ~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~ 122 (140)
+..|-|.-.| .+|-+-++-.++.||.+||+...+-++
T Consensus 108 DfhAgIflkg----~eHAVFa~~TS~GWyaiDDe~fypwtP 144 (167)
T 1qmy_A 108 DFHAGIFLKG----QEHAVFACVTSNGWYAIDDEDFYPWTP 144 (167)
T ss_dssp GEEEEEEEET----TTEEEEEECCTTSSEEEETTEEEECCC
T ss_pred hhhhheeecC----CCceEEEEEccCceEEecccccccCCC
Confidence 4445554455 689999999999999999999999855
No 24
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=71.57 E-value=5.2 Score=29.87 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=27.7
Q ss_pred EEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEecc
Q psy8602 84 CSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI 122 (140)
Q Consensus 84 ~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~~~ 122 (140)
++..+-.| +.++|||+-+.-.... +.+|...+.+++.
T Consensus 260 ~~a~vF~G-~~~~GHYt~~~~~~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTG-NYQCGHYTHITAKETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEES-CGGGCEEEEEEESSSE-EEEETTEEEEESE
T ss_pred EEEEEEEC-CCCccceEEEecCCce-eEEeCCcceeccc
Confidence 33344489 8889999988764433 7999999999874
No 25
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=62.17 E-value=25 Score=21.75 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=40.0
Q ss_pred CcEEEEEEEEeecCC--CC-------CCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEE
Q psy8602 79 NRYELCSVIKHSGLN--ID-------VGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137 (140)
Q Consensus 79 ~~Y~L~~vi~H~G~~--~~-------~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r 137 (140)
...++...|.|--.+ .. -.||+..+.. .+||..|-.++.....+.++|+=|+-+
T Consensus 18 ~~~~vk~~I~HPMetGl~~d~~g~~IPa~~I~~v~~-----~~ng~~v~~~~~~~~iS~NP~~~F~~~ 80 (108)
T 2oxg_Z 18 ETVTVKALISHKMESGQRKDADGKLIPRSIINRFTC-----ELNGVNVVDVAIDPAVSTNPYFEFDAK 80 (108)
T ss_dssp EEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE-----EETTEEEEEEEECTTBCSSCEEEEEEE
T ss_pred CCEEEEEEeECCCccccccCcCCCccchHheEEEEE-----EECCEEEEEEEeCCccccCCeEEEEEe
Confidence 356677788883211 11 1688877763 589999999999999999999999865
No 26
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=57.18 E-value=21 Score=24.62 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=36.4
Q ss_pred EEEEEEEeecCCCCCCeEEEEEeCCCcEEEEcCCeeEEe--ccccc------cCCCcEEEEEEEec
Q psy8602 82 ELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPV--GITDV------LNSEAYMLVYEKKV 139 (140)
Q Consensus 82 ~L~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~D~~v~~~--~~~~v------~~~~aYiLfY~r~~ 139 (140)
...|.|++.. -|+++..|-++.||.+|-..-.|. +...+ +..+.|=+|=.+-+
T Consensus 109 ~~~~FI~N~~-----~HWfaiRkigg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~ 169 (191)
T 3o65_A 109 NERSFICNYK-----QHWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGD 169 (191)
T ss_dssp GCCEEEEEES-----SCEEEEEEETTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESC
T ss_pred hhhhhhhccc-----cceeeEEecCCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3468888875 799999999999999998654443 22211 13467777766644
No 27
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=52.50 E-value=38 Score=20.84 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=40.7
Q ss_pred CCcEEEEEEEEeecCC---------CCCCeEEEEEeCCCcEEEEcCCeeEEeccccccCCCcEEEEEEE
Q psy8602 78 DNRYELCSVIKHSGLN---------IDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137 (140)
Q Consensus 78 ~~~Y~L~~vi~H~G~~---------~~~GHY~~~~~~~~~W~~~~D~~v~~~~~~~v~~~~aYiLfY~r 137 (140)
....++...|.|--.+ .--.||+..+.. .+||..|-.++.....+.++|+=|+-+
T Consensus 16 g~~~~vk~~I~HPmetGl~~D~~g~~iPa~~I~~v~~-----~~ng~~v~~~~~~~~iS~nP~~~F~~~ 79 (107)
T 1v8h_A 16 GEEFRLQVVAQHPNEPGTRRDAEGKLIPAKYINLVEV-----YFEGEKVAEARPGPSTSANPLYAFKFK 79 (107)
T ss_dssp TCEEEEEEEECCCCBCSCCBCTTSCBCCCBCEEEEEE-----EETTEEEEEECCCSSCCSSCEEEEEEE
T ss_pred CCcEEEEEEeECCCCccccccccCCcCchHheEEEEE-----EECCEEEEEEEeCCccccCCeEEEEEe
Confidence 3456677788883311 112588877763 589999999999999999999999865
No 28
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=44.80 E-value=9 Score=17.60 Aligned_cols=14 Identities=21% Similarity=0.698 Sum_probs=10.7
Q ss_pred EEEeCCCcEEEEcC
Q psy8602 101 TYISQHKRWFLCDD 114 (140)
Q Consensus 101 ~~~~~~~~W~~~~D 114 (140)
+|+|..+.|...++
T Consensus 12 ~Yvr~dg~WV~l~t 25 (27)
T 2ww6_A 12 AYVRKFGEWVLLST 25 (27)
T ss_dssp EEEEETTEEEEGGG
T ss_pred eeEEEcCeEEEccc
Confidence 58888889987654
No 29
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=32.46 E-value=52 Score=22.75 Aligned_cols=31 Identities=13% Similarity=0.443 Sum_probs=19.8
Q ss_pred EEEEEeecCCCCCCeEEEEEeCCC--cEEEEcC
Q psy8602 84 CSVIKHSGLNIDVGHYTTYISQHK--RWFLCDD 114 (140)
Q Consensus 84 ~~vi~H~G~~~~~GHY~~~~~~~~--~W~~~~D 114 (140)
.|||+-.|+...+-|+.|++-++. +.|.||-
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 455555553344449999999987 7888874
No 30
>2wdt_A Ubiquitin carboxyl-terminal hydrolase L3; hydrolase-protein binding complex, enzyme-ligand complex, UB isopeptidase, UCH-L superfamily, cystein proteinase, peptid hydrolase; 2.30A {Plasmodium falciparum} PDB: 2we6_A
Probab=31.84 E-value=26 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCcEEEEcCCeeEEec
Q psy8602 96 VGHYTTYISQHKRWFLCDDTKIKPVG 121 (140)
Q Consensus 96 ~GHY~~~~~~~~~W~~~~D~~v~~~~ 121 (140)
.=||+|||..+|.-|..|..+-.|++
T Consensus 162 ~~HFI~fV~~~G~LyELDG~k~gPi~ 187 (232)
T 2wdt_A 162 DTHFIVFVQIEGKIIELDGRKDHPTV 187 (232)
T ss_dssp CEEEEEEEESSSEEEEECTTSSSCEE
T ss_pred CeEEEEEEEeCCEEEEccCCCCCCcc
Confidence 35999999998899999988776664
No 31
>3rii_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; alpha-beta-alpha fold, thiol hydroalse, cysteine protease, deubiquitinating enzyme; 2.00A {Homo sapiens} SCOP: d.3.1.0 PDB: 3ris_A 3sqa_A 3tb3_A 3a7s_A
Probab=31.35 E-value=24 Score=25.02 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=21.7
Q ss_pred CCeEEEEEeCCCcEEEEcCCeeEEec
Q psy8602 96 VGHYTTYISQHKRWFLCDDTKIKPVG 121 (140)
Q Consensus 96 ~GHY~~~~~~~~~W~~~~D~~v~~~~ 121 (140)
.=||+|||..++.-|..|..+-.|+.
T Consensus 167 ~~HFIafV~~dG~LyELDG~k~gPi~ 192 (233)
T 3rii_A 167 AFHFVSYVPVNGRLYELDGLREGPID 192 (233)
T ss_dssp GSEEEEEEEETTEEEEECTTSSSCEE
T ss_pred ceeEEEEEEeCCeEEEcCCCCCCCcc
Confidence 35999999998899999998766653
No 32
>1cmx_A Protein (ubiquitin YUH1-UBAL); ubiquitin hydrolase, deubiquitinating enzyme, cysteine protease, enzyme specificity; 2.25A {Synthetic} SCOP: d.3.1.6
Probab=30.93 E-value=28 Score=24.73 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.2
Q ss_pred CCCeEEEEEeCCCcEEEEcCCe-eEEe
Q psy8602 95 DVGHYTTYISQHKRWFLCDDTK-IKPV 120 (140)
Q Consensus 95 ~~GHY~~~~~~~~~W~~~~D~~-v~~~ 120 (140)
..-||+|||..+|.-|..|..+ -.|+
T Consensus 163 ~~~HFI~fV~~~G~LyELDG~k~~gPi 189 (235)
T 1cmx_A 163 TNLHYITYVEENGGIFELDGRNLSGPL 189 (235)
T ss_dssp CSEEEEEEEECSSEEEEECTTCTTCCE
T ss_pred CCeEEEEEEeeCCEEEEecCCCCCCCe
Confidence 3459999999888999999887 5554
No 33
>4dm9_A Ubiquitin carboxyl-terminal hydrolase isozyme L1; ubiquitin hydrolase, ligase, hydrolase, ligase-inhibitor COM; HET: PHQ GME; 2.35A {Homo sapiens} PDB: 3kw5_A 2etl_A* 3irt_A 3kvf_A 3ifw_A 2len_A
Probab=30.90 E-value=25 Score=24.87 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=22.1
Q ss_pred CCCeEEEEEeCCCcEEEEcCCeeEEec
Q psy8602 95 DVGHYTTYISQHKRWFLCDDTKIKPVG 121 (140)
Q Consensus 95 ~~GHY~~~~~~~~~W~~~~D~~v~~~~ 121 (140)
..=||+|||..+|.-|..|..+-.|+.
T Consensus 163 ~~~HFIafV~~dG~LyELDG~k~gPi~ 189 (228)
T 4dm9_A 163 VNFHFILFNNVDGHLYELDGRMPFPVN 189 (228)
T ss_dssp CCEEEEEEEEETTEEEEECTTSSSCEE
T ss_pred CCceEEEEEEeCCeEEEcCCCCCCCce
Confidence 445999999998899999998766653
No 34
>1xd3_A Ubiquitin carboxyl-terminal esterase L3; enzyme-ligand complex, active site crossover loop, hydrolase; HET: GVE; 1.45A {Homo sapiens} SCOP: d.3.1.6 PDB: 1uch_A*
Probab=30.14 E-value=26 Score=24.78 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCcEEEEcCCeeEEec
Q psy8602 96 VGHYTTYISQHKRWFLCDDTKIKPVG 121 (140)
Q Consensus 96 ~GHY~~~~~~~~~W~~~~D~~v~~~~ 121 (140)
.=||+|||..+|.-|..|..+-.|++
T Consensus 167 ~~HFI~fV~~~G~LyELDG~k~gPi~ 192 (230)
T 1xd3_A 167 DLHFIALVHVDGHLYELDGRKPFPIN 192 (230)
T ss_dssp CEEEEEEEEETTEEEEECTTSSSCEE
T ss_pred CeEEEEEEeeCCEEEEccCCCCCCee
Confidence 45999999998899999988776664
No 35
>1flt_X FLT-1, VGR1, FMS-like tyrosine kinase 1; complex (growth factor-transferase), FLT-1 receptor, cystine glycoprotein; 1.70A {Homo sapiens} SCOP: b.1.1.4 PDB: 1qsv_A 1qsz_A 1qty_X 2xac_C 1rv6_X*
Probab=25.37 E-value=81 Score=18.78 Aligned_cols=35 Identities=9% Similarity=0.090 Sum_probs=25.3
Q ss_pred CcEEE-EEEEEeecCCCCCCeEEEEEeCCCcEEEEc
Q psy8602 79 NRYEL-CSVIKHSGLNIDVGHYTTYISQHKRWFLCD 113 (140)
Q Consensus 79 ~~Y~L-~~vi~H~G~~~~~GHY~~~~~~~~~W~~~~ 113 (140)
..|+- .|+++|.-.....|.|+|-++.++.++.=+
T Consensus 53 ~~~D~k~Gf~I~~~~~~~~g~y~C~a~~~g~~~~S~ 88 (95)
T 1flt_X 53 IIWDSRKGFIISNATYKEIGLLTCEATVNGHLYKTN 88 (95)
T ss_dssp EEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred eeECCCCCEEEeCCCcccCcEEEEEEEECCEEEEEE
Confidence 44554 378888775677899999999988665533
No 36
>3ihr_A Ubiquitin carboxyl-terminal hydrolase isozyme L5; center for eukaryotic structural genomics, UCH37, UCH-L5, UB hydrolase, proteasome, INO80; 2.95A {Homo sapiens}
Probab=24.32 E-value=37 Score=25.43 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCcEEEEcCCeeEEec
Q psy8602 96 VGHYTTYISQHKRWFLCDDTKIKPVG 121 (140)
Q Consensus 96 ~GHY~~~~~~~~~W~~~~D~~v~~~~ 121 (140)
.-||+|||..+|.-|..|..+-.|+.
T Consensus 162 ~~HFIafV~~dG~LyELDG~k~gPI~ 187 (328)
T 3ihr_A 162 AFHFVSYVPVNGRLYELDGLREGPID 187 (328)
T ss_dssp CEEEEEEEEETTEEEEEETTSSSCEE
T ss_pred ceeEEEEEeeCCEEEEcCCCCCCCcc
Confidence 35999999998899999998866663
Done!