RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8602
(140 letters)
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 71.7 bits (176), Expect = 5e-16
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 15/93 (16%)
Query: 51 IDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKR 108
+DL+ Y S+ + + + +YEL +V+ HSG + D GHY Y+ +
Sbjct: 171 LDLSPYLSEGEKDSDSDN--------GSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGK 222
Query: 109 WFLCDDTKIKPVGITDVL-----NSEAYMLVYE 136
W+ +D K+ V +VL +S AY+L YE
Sbjct: 223 WYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 70.1 bits (172), Expect = 3e-15
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 58 SDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK-RWFLCDDTK 116
+ Y S + L+ D Y+L +V+ H G +D GHYT Y Q +WF DD
Sbjct: 251 TPYTSSSIGDTQDSNSLD-PDYTYDLFAVVVHKG-TLDTGHYTAYCRQGDGQWFKFDDAM 308
Query: 117 IKPVGITDVLNSEAYMLVY 135
I V +VL S+AY+L Y
Sbjct: 309 ITRVSEEEVLKSQAYLLFY 327
Score = 52.0 bits (125), Expect = 1e-08
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1 MNVILQAFSHVPLIRNFFLSTIHKCKLD----QYCFLCKIEALFNEF-YNGNVEP 50
MNVILQA H PL+RN+FLS H C C C ++ +F EF Y+G+ P
Sbjct: 12 MNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSGDRSP 66
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 68.6 bits (168), Expect = 1e-14
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 13/89 (14%)
Query: 49 EPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQ--H 106
+DL+ Y + +E +YEL +V+ HSG ++ GHY YI +
Sbjct: 236 LELDLSSYLEEELEGEEPPT-----------KYELVAVVVHSGSSLSGGHYIAYIKKREK 284
Query: 107 KRWFLCDDTKIKPVGITDVLNSEAYMLVY 135
+W DD K+ V +VL S AY+L Y
Sbjct: 285 NKWVKFDDEKVSVVTEEEVLRSSAYILFY 313
Score = 31.2 bits (71), Expect = 0.13
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 1 MNVILQAFSHVPLIRNFFLS---TIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDL 53
MN +LQA +P +R++ L + + LF+ + N + +
Sbjct: 15 MNSVLQALFSIPPLRDYLLQNSSELINPLGSLNQLPRALADLFHALQSPNSKNASV 70
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 64.6 bits (158), Expect = 3e-13
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 70 APYELNLEDN--RYELCSVIKHSGLNIDVGHYTTYI-SQHKRWFLCDDTKIKPVGITDVL 126
+PY D +Y+L +V+ HSG + GHY Y+ S + +W+ DD+K+ PV I VL
Sbjct: 235 SPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVL 294
Query: 127 NSEAYMLVY 135
+ +AY+L Y
Sbjct: 295 SQKAYILFY 303
Score = 31.1 bits (71), Expect = 0.14
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 1 MNVILQAFSHVPLIRNFFLSTIHK--CKLDQYCFLCKIEA 38
+N +LQ +H P + N+ LS H C + +C +C +EA
Sbjct: 13 LNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEA 52
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 61.9 bits (151), Expect = 1e-12
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 77 EDNRYELCSVIKHSGLNIDVGHYTTY--ISQHKRWFLCDDTKIKPVGITDVLNSEAYMLV 134
+Y+L +V+ H G +++ GHYT Y ++ W+ DD+++ V + V++S AY+L
Sbjct: 170 GPFKYDLYAVVNHYG-SLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILF 228
Query: 135 YE 136
YE
Sbjct: 229 YE 230
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 53.2 bits (128), Expect = 3e-09
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 33/111 (29%)
Query: 49 EPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHK- 107
E +DL + C+ ED+ Y L V++HSG + GHY Y+
Sbjct: 179 EILDLAPFCDPKCNSSEDK---------SSVLYRLYGVVEHSGT-MRSGHYVAYVKVRPP 228
Query: 108 ----------------------RWFLCDDTKIKPVGITDVLNSEAYMLVYE 136
+W+ D+ ++ V + +VL SEAY+L YE
Sbjct: 229 QQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 52.6 bits (127), Expect = 5e-09
Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 28/112 (25%)
Query: 51 IDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQ--HKR 108
+D+ Y + + + E YEL V+ HSG + GHY +YI +
Sbjct: 225 LDMEPYTEKG---LAKKEGDSEKKDSESYIYELHGVLVHSG-DAHGGHYYSYIKDRDDGK 280
Query: 109 WFLCDDTKIKPVGITDVL----------------------NSEAYMLVYEKK 138
W+ +D + P D + AYML YE+K
Sbjct: 281 WYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERK 332
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 51.8 bits (124), Expect = 1e-08
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGITDVLNS 128
Y L +V+ HSG I GHYT Y+ RW L DD+++K D L +
Sbjct: 272 YRLFAVVMHSGATISSGHYTAYV----RWLLFDDSEVKVTEEKDFLEA 315
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 49.6 bits (119), Expect = 6e-08
Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 17/85 (20%)
Query: 69 VAPYELNL---------EDNRYELCSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKP 119
V P EL L D YEL +V+ H G + GHY + + H W L DD ++
Sbjct: 216 VFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKSHGGWLLFDDETVEK 275
Query: 120 VGITDVLN--------SEAYMLVYE 136
+ V + AY+L Y+
Sbjct: 276 IDENAVEEFFGDSPNQATAYVLFYQ 300
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 48.5 bits (116), Expect = 1e-07
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 24/84 (28%)
Query: 76 LEDNRYELCSVIKHSGLNIDVGHYTTY----------------------ISQHKRWFLCD 113
L Y L +V+ H G + GHY Y S W+
Sbjct: 158 LPKVLYRLRAVVVHYGSH-SSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRIS 216
Query: 114 DTKIKPVGITDVL-NSEAYMLVYE 136
DT +K V ++VL AYML YE
Sbjct: 217 DTTVKEVSESEVLEQKSAYMLFYE 240
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 45.8 bits (109), Expect = 1e-06
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 9/65 (13%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSE-------AY 131
YEL +VI H G + D GHY ++ +W DD K+ V D+L AY
Sbjct: 241 YELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAY 300
Query: 132 MLVYE 136
+L+Y+
Sbjct: 301 ILLYK 305
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 45.3 bits (107), Expect = 2e-06
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138
Y+L +V H G + GHYT Y + W+L DD++I V D + S AY+L Y +K
Sbjct: 764 YDLYAVDNHYGG-LSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 43.3 bits (102), Expect = 9e-06
Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 21/138 (15%)
Query: 13 LIRNFFLSTIHKCKLDQYCFLCKIE--------ALFNEFYNGNVEPIDLTKYRSDYCSED 64
LI NF + +++ C CK E F E + N++ L SDY ++
Sbjct: 115 LISNFKTWS----PIEKDCSSCKCESAISSERIMTFPECLSINLKRYKLRIATSDYLKKN 170
Query: 65 EDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTY---ISQHKRWFLCDDTKIKPVG 121
E E + Y D +Y L +VI H G + GHY Y + W C D +I+PV
Sbjct: 171 E-EIMKKYCG--TDAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVS 227
Query: 122 ITDVLN---SEAYMLVYE 136
DV S Y++ Y+
Sbjct: 228 KNDVSTNARSSGYLIFYD 245
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 42.3 bits (99), Expect = 2e-05
Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 51 IDLTKYRS-DYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYISQHKRW 109
ID + E + + +Y L V+ H+G ++ GHY + + + W
Sbjct: 326 IDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNG-TLNGGHYFSEVKRSGTW 384
Query: 110 FLCDDTKIKPVG-ITDVLNSEAYMLVYEK 137
+ DD++++ T + +Y+L Y +
Sbjct: 385 NVYDDSQVRKGSRTTSGSHPSSYILFYTR 413
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 39.6 bits (93), Expect = 2e-04
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 80 RYELCSVIKHSGLNIDVGHYTTYISQ----HKRWFLCDDTKIKPVGITDVLNSEAYMLVY 135
+YEL + I H G ++ GHY +I + +W L +D K+ + Y+ Y
Sbjct: 251 KYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFY 310
Query: 136 E 136
+
Sbjct: 311 Q 311
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 39.9 bits (93), Expect = 2e-04
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 25/85 (29%)
Query: 78 DNRYELCSVIKHSGLNIDVGHYTTYISQHK--RWFLCDDTKIKPVGITDVLN-------- 127
D Y L V+ HSG ++ GHY + K RW+ DDT++ +VL
Sbjct: 428 DAVYVLYGVLVHSG-DLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHP 486
Query: 128 --------------SEAYMLVYEKK 138
AYMLVY +K
Sbjct: 487 YKDKIRDHSGIKRFMSAYMLVYLRK 511
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 39.3 bits (91), Expect = 3e-04
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
Query: 55 KYRSDYCSEDEDEGVAPYELNLEDNR------------YELCSVIKHSGLNIDVGHYTTY 102
K R +C D+D E+ E+ + Y L +VI H G +I GHY +
Sbjct: 650 KRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWF 709
Query: 103 I----SQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137
I +W L +D K +VL Y+ ++++
Sbjct: 710 IRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 38.2 bits (89), Expect = 6e-04
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 23/87 (26%)
Query: 73 ELNLEDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVL---- 126
E + YEL V+ H G++ GHY +I Q W+ +D ++ + +
Sbjct: 238 ESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNS 297
Query: 127 -----------------NSEAYMLVYE 136
+ AYMLVY+
Sbjct: 298 EDPAKPRKSEIKKGTHSSRTAYMLVYK 324
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 36.5 bits (85), Expect = 0.002
Identities = 14/19 (73%), Positives = 15/19 (78%)
Query: 2 NVILQAFSHVPLIRNFFLS 20
NVI+QA SHV IRNFFL
Sbjct: 132 NVIIQALSHVKPIRNFFLL 150
Score = 30.7 bits (70), Expect = 0.20
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 80 RYELCSVIKHSGLNIDVGHYTTYISQHKR--WFLCDDTKIKPVGITDVLNSEAYMLVYE 136
+Y L + I H G + G + + WF D +K V + SE+Y+ ++E
Sbjct: 382 KYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 33.5 bits (77), Expect = 0.020
Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 34 CKIEA-LFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGL 92
K N ++ +D+ +DE V L+ YEL V+ H G
Sbjct: 209 LKRYNVTPNGNWSRLNTFVDIPLEIRLPHFIQDDEMVNEGPLSGNFK-YELQGVVCHIGD 267
Query: 93 NIDVGHYTTYI----SQHKRWFLCDD 114
+ GH ++I S+ +W+L +D
Sbjct: 268 STHSGHLVSFIRVAPSEDDQWYLFND 293
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 32.8 bits (75), Expect = 0.039
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 29/85 (34%)
Query: 81 YELCSVIKHSGLNIDVGHYTTYI----------------------SQHKRWFLCDDTKIK 118
Y L +V+ HSG + + GHY TY + K W+L +D+++
Sbjct: 243 YRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVT 302
Query: 119 PVGITDVLNSE-------AYMLVYE 136
V N Y+L YE
Sbjct: 303 FSSFESVQNVTSRFPKDTPYILFYE 327
>gnl|CDD|201881 pfam01597, GCV_H, Glycine cleavage H-protein. This is a family of
glycine cleavage H-proteins, part of the glycine
cleavage multienzyme complex (GCV) found in bacteria and
the mitochondria of eukaryotes. GCV catalyzes the
catabolism of glycine in eukaryotes. A lipoyl group is
attached to a completely conserved lysine residue. The H
protein shuttles the methylamine group of glycine from
the P protein to the T protein.
Length = 122
Score = 27.3 bits (61), Expect = 1.7
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 102 YISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVY 135
Y +H W + VGITD +E LV+
Sbjct: 3 YTKEH-EWVKVEGDGTATVGITDFAQAELGDLVF 35
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome.
Length = 268
Score = 27.5 bits (61), Expect = 2.2
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 2 NVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFN 41
N +LQ +P RNF + C + C LC++ LF+
Sbjct: 28 NSLLQLLYFIPPFRNFTAIILVACPKE-SCLLCELGYLFS 66
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 27.5 bits (61), Expect = 2.7
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 19/73 (26%)
Query: 83 LCSVIKHSGLNIDVGHYTTYISQHK-------------RWFLCDDTKIKPVG-----ITD 124
LCS + H G +++ GHY ++ +W DD + I
Sbjct: 169 LCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVSNGFNIPA 228
Query: 125 VLNSE-AYMLVYE 136
E YML Y+
Sbjct: 229 ARLLEDPYMLFYQ 241
>gnl|CDD|119386 cd00163, RNase_A, RNase A family, or Pancreatic RNases family;
includes vertebrate RNase homologs to the bovine
pancreatic ribonuclease A (RNase A). Many of these
enzymes have special biological activities; for example,
some stimulate the development of vascular endothelial
cells, dendritic cells, and neurons, are
cytotoxic/anti-tumoral and/or anti-pathogenic. RNase A
is involved in endonucleolytic cleavage of
3'-phosphomononucleotides and 3'-phosphooligonucleotides
ending in C-P or U-P with 2',3'-cyclic phosphate
intermediates. The catalytic mechanism is a
transphosphorylation of P-O 5' bonds on the 3' side of
pyrimidines and subsequent hydrolysis to generate 3'
phosphate groups. The RNase A family proteins have a
conserved catalytic triad (two histidines and one
lysine); recently some family members lacking the
catalytic residues have been identified. They also share
three or four disulfide bonds. The most conserved
disulfide bonds are close to the N and C termini and
contribute most significantly to the conformational
stability. 8 RNase A homologs had initially been
identified in the human genome, pancreatic RNase (RNase
1), Eosinophil Derived Neurotoxin (EDN/RNASE 2),
Eosinophil Cationic Protein (ECP/RNase 3), RNase 4,
Angiogenin (RNase 5), RNase 6 or k6, the skin derived
RNase (RNase 7) and RNase 8. These eight human genes are
all located in a cluster on chromosome 14. Recent
genomic analysis has extended the family to 13
sequences. However only the first eight identified human
RNases, which are refered to as "canonical" RNases,
contain the catalytic residues required for RNase A
activity. The new genes corresponding to RNases 9-13 are
also located in the same chromosome cluster and seem to
be related to male-reproductive functions. RNases 9-13
have the characteristic disulfide bridge pattern but are
unlikely to share RNase activity. The RNase A family
most likely started off in vertebrates as a host-defense
protein, and comparative analysis in mammals and birds
indicates that the family may have originated from a
RNase 5-like gene. This hypothesis is supported by the
fact that only RNase 5-like RNases have been reported
outside the mammalian class. The RNase 5 group would
therefore be the most ancient form of this family, and
all other members would have arisen during mammalian
evolution.
Length = 119
Score = 26.2 bits (58), Expect = 3.7
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 89 HSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVGI 122
G I Y T ++ CDD I PV +
Sbjct: 85 TGGSRIPNCRYNTTYTEKFILVTCDDKPIVPVHL 118
>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family. Transcription of the AUX/IAA
family of genes is rapidly induced by the plant hormone
auxin. Some members of this family are longer and
contain an N terminal DNA binding domain. The function
of this region is uncertain.
Length = 188
Score = 26.1 bits (58), Expect = 6.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 94 IDVGHYTTY---ISQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEKK 138
+D+ Y +Y S ++ F C I G+ D+LN Y+ YE K
Sbjct: 106 VDLKMYKSYDELSSALEKMFSCFT--IGESGLLDLLNGSEYVPTYEDK 151
>gnl|CDD|234198 TIGR03400, 18S_RNA_Rcl1p, 18S rRNA biogenesis protein RCL1.
Members of this strictly eukaryotic protein family are
not RNA 3'-phosphate cyclase (6.5.1.4), but rather a
homolog with a distinct function, found in the
nucleolus and required for ribosomal RNA processing.
Homo sapiens has both a member of this RCL (RNA
terminal phosphate cyclase like) family and EC 6.5.1.4,
while Saccharomyces has a member of this family only.
Length = 360
Score = 26.0 bits (58), Expect = 8.8
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
Query: 50 PIDLTKYRSDYCSEDEDEGVAPYELNL 76
P+ +TK RSD DE+ G+ YE++
Sbjct: 22 PVRITKIRSD----DENPGLRDYEVSF 44
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.434
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,008,852
Number of extensions: 605097
Number of successful extensions: 440
Number of sequences better than 10.0: 1
Number of HSP's gapped: 420
Number of HSP's successfully gapped: 45
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)