RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8602
(140 letters)
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 67.4 bits (163), Expect = 8e-15
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 5/119 (4%)
Query: 23 HKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDN--R 80
+ L + L + + K ++ E+ ++ Y + ++N +
Sbjct: 230 RRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNNLKK 289
Query: 81 YELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGITDVLNSEAYMLVYEK 137
Y L SV H G +D GHYT Y + +RWF DD ++ + ++ V +S AY+L Y
Sbjct: 290 YNLFSVSNHYG-GLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTS 347
Score = 37.8 bits (86), Expect = 2e-04
Identities = 9/59 (15%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQ-------YCFLCKIEALFNEFYNGNVEPID 52
MN ILQ + P + ++F ++ +++ + + + G I
Sbjct: 27 MNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYIS 85
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 65.5 bits (158), Expect = 4e-14
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 62 SEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI-SQHKRWFLCDDTKIKPV 120
+ E A + Y+L +V+ H G + GHY +++ + W DD K+ V
Sbjct: 299 VKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIV 358
Query: 121 GITDVLNSE-------AYMLVYEKK 138
D+L AY+L+Y +
Sbjct: 359 TPEDILRLSGGGDWHIAYVLLYGPR 383
Score = 37.4 bits (85), Expect = 2e-04
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 1 MNVILQAFSHVPLIRNFFLSTIHKCKLD-----QYCFLCKIEALFNEFYNGN--VEPIDL 53
MN +Q VP +++ + + LF+ + + PI L
Sbjct: 16 MNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIIL 75
Query: 54 TK 55
+
Sbjct: 76 LQ 77
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 64.4 bits (155), Expect = 9e-14
Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 15/133 (11%)
Query: 6 QAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDYCSEDE 65
+ I+ F + K + + V ++ SE+
Sbjct: 215 RCRGRKRCIKKFSIQRFPKILVLHLKR-FSESRIRTSKLTTFVNFPLRDLDLREFASENT 273
Query: 66 DEGVAPYELNLEDNRYELCSVIKHSGLNIDVGHYTTYI--SQHKRWFLCDDTKIKPVGIT 123
+ V Y L +V HSG GHYT Y W +D+ + P+ +
Sbjct: 274 NHAV-----------YNLYAVSNHSG-TTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSS 321
Query: 124 DVLNSEAYMLVYE 136
V S+AY+L YE
Sbjct: 322 QVRTSDAYLLFYE 334
Score = 35.9 bits (81), Expect = 8e-04
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 1 MNVILQAFSHVPLIRNFFLSTIHKCKLD-----QYCFLCKIEALFNEFYNGN 47
MN ILQ S+ +R++ L ++ L + + L + +
Sbjct: 15 MNSILQCLSNTRELRDYCLQRLYMRDLHHGSNAHTALVEEFAKLIQTIWTSS 66
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 60.2 bits (144), Expect = 3e-12
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 77 EDNRYELCSVIKHSGLNIDVGHYTTYI---SQHKRWFLCDDTKIKPVGITDVLNSE---- 129
Y L VI H G N + GHY +I +W+ +D K+ V + +
Sbjct: 324 PSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE 383
Query: 130 ---AYMLVYEKKVL 140
A +L+Y+ L
Sbjct: 384 SDSALILMYKGFGL 397
Score = 34.4 bits (77), Expect = 0.002
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 9/61 (14%)
Query: 1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQY---------CFLCKIEALFNEFYNGNVEPI 51
+N LQA V +R+ L+ + + +++ F N + + +
Sbjct: 18 LNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSV 77
Query: 52 D 52
Sbjct: 78 L 78
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 42.0 bits (97), Expect = 7e-06
Identities = 23/117 (19%), Positives = 41/117 (35%), Gaps = 18/117 (15%)
Query: 39 LFNEFYNGNVEPIDLTKYRSDYCSEDEDEGVAPYELNLEDNRYELCSVIKHSGLNIDVGH 98
L Y+ + R ++ + + + Y L +V+ HSG N GH
Sbjct: 199 LMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDN-HGGH 257
Query: 99 YTTYISQ--HKRWFLCDDTKIKPVGITDVLN---------------SEAYMLVYEKK 138
Y Y++ +W DD + + + + AYMLVY ++
Sbjct: 258 YVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE 314
Score = 39.7 bits (91), Expect = 4e-05
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 1 MNVILQAFSHVPLIRNFFLSTIHKCKLDQYCFLCKIEALFNEFYNGNVEPIDLTKYRSDY 60
MN +LQ +R + ++ +F E + + +P+ K +
Sbjct: 18 MNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSD-KPVGTKKLTKSF 76
Query: 61 CSEDEDEG 68
E D
Sbjct: 77 GWETLDSF 84
>d1wjqa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 26.0 bits (57), Expect = 1.0
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 84 CSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVG 121
+V + V H+ + + + W D I PVG
Sbjct: 34 ATVADTDDHRVKV-HFDGWNNCYDYWIDADSPDIHPVG 70
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 136
Score = 26.3 bits (58), Expect = 1.1
Identities = 5/18 (27%), Positives = 7/18 (38%)
Query: 94 IDVGHYTTYISQHKRWFL 111
I Y Y S+ R +
Sbjct: 86 IRPDGYNVYRSEKHRLPV 103
>d1wjsa_ b.34.9.3 (A:) Lethal(3)malignant brain tumor-like 3
protein, L3MBTL3 (KIAA1798) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 127
Score = 26.0 bits (57), Expect = 1.1
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 84 CSVIKHSGLNIDVGHYTTYISQHKRWFLCDDTKIKPVG 121
+V + G I + H+ Y + W D I PVG
Sbjct: 34 LTVAEVCGYRIKL-HFDGYSDCYDFWVNADALDIHPVG 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.140 0.434
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 534,354
Number of extensions: 23761
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 17
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.2 bits)