BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8603
(184 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 222 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 275
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 534 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 593
Query: 112 LDN 114
N
Sbjct: 594 EKN 596
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 223 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 276
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 535 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 594
Query: 112 LDN 114
N
Sbjct: 595 EKN 597
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 223 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 276
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 509 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 568
Query: 112 LDN 114
N
Sbjct: 569 EKN 571
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 219 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 272
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 531 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 590
Query: 112 LDN 114
N
Sbjct: 591 EKN 593
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 222 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 275
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 534 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 593
Query: 112 LDN 114
N
Sbjct: 594 EKN 596
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 232 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 285
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 544 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 603
Query: 112 LDN 114
N
Sbjct: 604 EKN 606
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 232 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 285
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 544 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHENIRDDEGFIIRHFAGAVCYETTQFV 603
Query: 112 LDN 114
N
Sbjct: 604 EKN 606
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 222 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 275
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 534 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 593
Query: 112 LDN 114
N
Sbjct: 594 EKN 596
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 222 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 275
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 508 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 567
Query: 112 LDN 114
N
Sbjct: 568 EKN 570
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 223 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 276
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 535 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 594
Query: 112 LDN 114
N
Sbjct: 595 EKN 597
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 220 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 273
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 532 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 591
Query: 112 LDN 114
N
Sbjct: 592 EKN 594
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 222 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNR 275
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQSGPYT 111
P S++ + H+D+ IP+ R + FI++H+AG V Y++ +
Sbjct: 508 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYETTQFV 567
Query: 112 LDN 114
N
Sbjct: 568 EKN 570
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSTSERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 255 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 308
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 534 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 593
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 594 DLELCFKDSS 603
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 255 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 308
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 534 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 593
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 594 DLELCFKDSS 603
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 267 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 320
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 546 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 605
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 606 DLELCFKDSS 615
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 267 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 320
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 546 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 605
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 606 DLELCFKDSS 615
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 255 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 308
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 534 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 593
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 594 DLELCFKDSS 603
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 255 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 308
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 534 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 593
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 594 DLELCFKDSS 603
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 255 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 308
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 534 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 593
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 594 DLELCFKDSS 603
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 267 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 320
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 546 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 605
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 606 DLELCFKDSS 615
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 267 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 320
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 546 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 605
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 606 DLELCFKDSS 615
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 255 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 308
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 534 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 593
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 594 DLELCFKDSS 603
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 58 ELPSFPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGG 116
E FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N
Sbjct: 531 EQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKD 590
Query: 117 P-ERNVEFVPRKSA 129
P ++++E + S+
Sbjct: 591 PLQQDLELCFKDSS 604
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 58 ELPSFPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGG 116
E FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N
Sbjct: 531 EQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKD 590
Query: 117 P-ERNVEFVPRKSA 129
P ++++E + S+
Sbjct: 591 PLQQDLELCFKDSS 604
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 58 ELPSFPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGG 116
E FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N
Sbjct: 531 EQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKD 590
Query: 117 P-ERNVEFVPRKSA 129
P ++++E + S+
Sbjct: 591 PLQQDLELCFKDSS 604
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSTTERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSTTERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 62 FPGASNETLLQKFNT-VHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGP-ER 119
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+ + N P ++
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQ 594
Query: 120 NVEFVPRKSA 129
++E + S+
Sbjct: 595 DLELCFKDSS 604
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 60.8 bits (146), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A ++ YLLEKSR Q + ER +H+FYYL+AGAS+Q R+ L L+ +Y +L+ + +P
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIP 323
Query: 61 S 61
+
Sbjct: 324 A 324
Score = 28.5 bits (62), Expect = 2.4, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ--RRENAFIVKHYAGKVKYQSGPYTLDNGGP 117
FP A++ + ++K ++ ++ + + + F + HYAGKV Y + + N P
Sbjct: 546 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDP 603
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 60.5 bits (145), Expect = 5e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A ++ YLLEKSR Q + ER +H+FYYL+AGAS+Q R+ L L+ +Y +L+ + +P
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIP 323
Query: 61 S 61
+
Sbjct: 324 A 324
Score = 28.5 bits (62), Expect = 2.5, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ--RRENAFIVKHYAGKVKYQSGPYTLDNGGP 117
FP A++ + ++K ++ ++ + + + F + HYAGKV Y + + N P
Sbjct: 546 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDP 603
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 60.5 bits (145), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A ++ YLLEKSR Q + ER +H+FYYL+AGAS+Q R+ L L+ +Y +L+ + +P
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIP 323
Query: 61 S 61
+
Sbjct: 324 A 324
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ--RRENAFIVKHYAGKVKYQSGPYTLDNGGP 117
FP A++ + ++K ++ ++ + + + F + HYAGKV Y + + N P
Sbjct: 546 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDP 603
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 60.1 bits (144), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A ++ YLLEKSR Q + ER +H+FYYL+AGAS+Q R+ L L+ +Y +L+ + +P
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIP 323
Query: 61 S 61
+
Sbjct: 324 A 324
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ--RRENAFIVKHYAGKVKYQSGPYTLDNGGP 117
FP A++ + ++K ++ ++ + + + F + HYAGKV Y + + N P
Sbjct: 546 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDP 603
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 60.1 bits (144), Expect = 6e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A ++ YLLEKSR Q + ER +H+FYYL+AGAS+Q R+ L L+ +Y +L+ + +P
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIP 323
Query: 61 S 61
+
Sbjct: 324 A 324
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ--RRENAFIVKHYAGKVKYQSGPYTLDNGGP 117
FP A++ + ++K ++ ++ + + + F + HYAGKV Y + + N P
Sbjct: 546 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDP 603
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 59.3 bits (142), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A ++ YLLEKSR Q + ER +H+FYYL+AGAS+Q R+ L L+ +Y +L+ + +P
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIP 323
Query: 61 S 61
+
Sbjct: 324 A 324
Score = 27.7 bits (60), Expect = 4.1, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ--RRENAFIVKHYAGKVKYQSGPYTLDNGGP 117
FP A++ + ++K ++ ++ + + + F + HYAGKV Y + + N P
Sbjct: 546 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAWLTKNMDP 603
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYL 52
A ++ YLLEKSR Q + E ++H+FY LL GA +Q + L L+ Y +L
Sbjct: 234 ANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFL 285
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ--RRENAFIVKHYAGKVKYQSGPYTLDNGGP 117
FP A++++ ++K +P ++ P+ R + F V HYAGKV Y++ + + N P
Sbjct: 515 FPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKANEWLMKNMDP 572
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHY 51
A ++ YLLEKSR+ Q ERNYH+FY L A A+ + +L L +HY
Sbjct: 237 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHY 287
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 62 FPGASNETLLQK-FNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQS 107
P S++T QK +NT +E P+ AFI+KH+A KV+YQ
Sbjct: 515 MPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQC 561
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHY 51
A ++ YLLEKSR+ Q ERNYH+FY L A A+ + +L L +HY
Sbjct: 237 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHY 287
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 62 FPGASNETLLQKFNTVHRDN-PFYEIPQRRENAFIVKHYAGKVKYQS 107
P S++T QK H + +E P+ AFI+KH+A KV+YQ
Sbjct: 515 MPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQC 561
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHY 51
A ++ YLLEKSR+ Q ERNYH+FY L A A+ + +L L +HY
Sbjct: 237 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHY 287
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 62 FPGASNETLLQKFNTVHRDN-PFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDN 114
P S++T QK H + +E P+ AFI+KH+A KV+YQ + N
Sbjct: 515 MPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGFLEKN 568
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 3 VQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLK-KIESYHYLNR 54
+ YLLEKSR+ + +GER++H+FY +L G S L L +Y YL +
Sbjct: 179 ITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKK 231
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 43.9 bits (102), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 3 VQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLK-KIESYHYLNR 54
+ YLLEKSR+ + +GER++H+FY +L G S L L +Y YL +
Sbjct: 179 ITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKK 231
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 43.9 bits (102), Expect = 6e-05, Method: Composition-based stats.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGA 33
A ++ YLLEKSR+ Q ERNYH+FY LL+ A
Sbjct: 265 ADIETYLLEKSRVTYQQSAERNYHIFYQLLSPA 297
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 41.6 bits (96), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHL-KKIESYHYLNRIELEL 59
A ++ YLLEKSR+ Q ER+YH+FY +++ + L + YHY+++ E+ +
Sbjct: 260 ADIETYLLEKSRVTFQLPAERSYHIFYQIMSNKKPELIDMLLITTNPYDYHYVSQGEITV 319
Query: 60 PS 61
PS
Sbjct: 320 PS 321
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGA 33
A ++ YLLEKSR+ Q ERNYH+FY + + A
Sbjct: 260 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 292
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGA 33
A ++ YLLEKSR+ Q ERNYH+FY + + A
Sbjct: 260 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 292
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGA 33
A ++ YLLEKSR+ Q ERNYH+FY + + A
Sbjct: 260 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 292
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGA 33
A ++ YLLEKSR+ Q ERNYH+FY + + A
Sbjct: 256 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 288
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGA 33
A ++ YLLEKSR+ Q ERNYH+FY + + A
Sbjct: 255 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 287
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGA 33
A ++ YLLEKSR+ Q ERNYH+FY + + A
Sbjct: 261 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 293
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 40.8 bits (94), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGA 33
A ++ YLLEKSR+ Q ERNYH+FY + + A
Sbjct: 262 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNA 294
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLA 31
A ++ YLLEKSR+ Q + ER+YH+FY +L+
Sbjct: 261 ADIETYLLEKSRVIFQLKAERDYHIFYQILS 291
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHL-KKIESYHYLNRIELEL 59
A ++ YLLE SR+ Q ER+YH+FY +++ + L + YHY++ E+ +
Sbjct: 263 ADIETYLLEXSRVTFQLPAERSYHIFYQIMSNXXPELIDMLLITTNPYDYHYVSEGEITV 322
Query: 60 PS 61
PS
Sbjct: 323 PS 324
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHL-KKIESYHYLNRIELEL 59
A ++ YLLE SR+ Q ER+YH+FY +++ + L + YHY++ E+ +
Sbjct: 260 ADIETYLLEXSRVTFQLPAERSYHIFYQIMSNXXPELIDMLLITTNPYDYHYVSEGEITV 319
Query: 60 PS 61
PS
Sbjct: 320 PS 321
>pdb|3HJB|A Chain A, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|B Chain B, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|C Chain C, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|D Chain D, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae
Length = 574
Score = 34.3 bits (77), Expect = 0.045, Method: Composition-based stats.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 3/89 (3%)
Query: 23 YHVFYYLLAGASDQDRHSLHLKKIESY--HYLNRIELELPSFPGASNETLLQKFNTVHRD 80
Y F LLAGA + D+H ++ ES L I + +F GA +E +L +HR
Sbjct: 312 YDNFVELLAGAHEMDQHFVN-TPFESNIPVILALIGIWYNNFHGAESEAILPYDQYLHRF 370
Query: 81 NPFYEIPQRRENAFIVKHYAGKVKYQSGP 109
+++ N V V YQ+GP
Sbjct: 371 AAYFQQGNMESNGKYVDRNGNPVTYQTGP 399
>pdb|3NBU|A Chain A, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|B Chain B, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|C Chain C, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|D Chain D, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|E Chain E, Crystal Structure Of Pgi Glucosephosphate Isomerase
pdb|3NBU|F Chain F, Crystal Structure Of Pgi Glucosephosphate Isomerase
Length = 549
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Query: 26 FYYLLAGASDQDRH-SLHLKKIESYHYLNRIELELPSFPGASNETLLQKFNTVHRDNPFY 84
F LL+GA D+H S + L I + +F GA E +L +HR ++
Sbjct: 290 FVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEAILPYDQYMHRFAAYF 349
Query: 85 EIPQRRENAFIVKHYAGKVKYQSGP 109
+ N V V YQ+GP
Sbjct: 350 QQGNMESNGKYVDRNGNVVDYQTGP 374
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,703,864
Number of Sequences: 62578
Number of extensions: 231594
Number of successful extensions: 570
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 116
length of query: 184
length of database: 14,973,337
effective HSP length: 93
effective length of query: 91
effective length of database: 9,153,583
effective search space: 832976053
effective search space used: 832976053
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)