Query psy8603
Match_columns 184
No_of_seqs 172 out of 1108
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 23:02:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8603.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8603hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01381 MYSc_type_VII Myosin m 100.0 5.5E-41 1.2E-45 313.4 10.6 161 1-184 165-327 (671)
2 cd01377 MYSc_type_II Myosin mo 100.0 6.8E-41 1.5E-45 313.8 10.7 158 1-183 180-339 (693)
3 COG5022 Myosin heavy chain [Cy 100.0 9.7E-42 2.1E-46 328.8 4.9 158 1-184 235-394 (1463)
4 PTZ00014 myosin-A; Provisional 100.0 5.8E-41 1.3E-45 318.0 9.6 161 1-183 264-427 (821)
5 cd01383 MYSc_type_VIII Myosin 100.0 1.2E-40 2.6E-45 311.3 10.1 158 1-183 170-329 (677)
6 cd01380 MYSc_type_V Myosin mot 100.0 3.1E-40 6.7E-45 309.4 10.5 159 1-184 171-331 (691)
7 cd01385 MYSc_type_IX Myosin mo 100.0 4.2E-40 9.1E-45 308.4 11.0 161 1-183 176-338 (692)
8 cd01378 MYSc_type_I Myosin mot 100.0 8.1E-40 1.7E-44 305.8 10.6 157 1-183 168-330 (674)
9 cd01387 MYSc_type_XV Myosin mo 100.0 7.5E-40 1.6E-44 306.1 10.2 161 1-184 166-328 (677)
10 cd01384 MYSc_type_XI Myosin mo 100.0 1.1E-39 2.3E-44 304.8 9.9 157 1-183 171-332 (674)
11 cd00124 MYSc Myosin motor doma 100.0 2.5E-39 5.4E-44 303.1 11.1 160 1-183 166-327 (679)
12 cd01379 MYSc_type_III Myosin m 100.0 4.8E-39 1E-43 299.5 10.7 162 1-184 166-334 (653)
13 smart00242 MYSc Myosin. Large 100.0 4.6E-39 9.9E-44 301.2 10.5 160 1-184 174-335 (677)
14 cd01382 MYSc_type_VI Myosin mo 100.0 1.1E-38 2.5E-43 299.7 10.9 159 1-183 170-363 (717)
15 KOG0164|consensus 100.0 2E-39 4.3E-44 296.1 3.5 156 1-183 178-335 (1001)
16 PF00063 Myosin_head: Myosin h 100.0 2.2E-38 4.8E-43 297.0 8.8 158 1-183 169-328 (689)
17 KOG0162|consensus 100.0 3.7E-36 8E-41 275.2 3.8 157 1-184 186-348 (1106)
18 cd01386 MYSc_type_XVIII Myosin 100.0 3.2E-35 7E-40 277.6 9.3 146 1-173 167-315 (767)
19 KOG0163|consensus 100.0 6.7E-33 1.4E-37 254.6 4.4 159 2-183 224-417 (1259)
20 KOG0161|consensus 100.0 8E-32 1.7E-36 269.0 2.6 158 1-183 254-413 (1930)
21 KOG0160|consensus 100.0 6.2E-31 1.3E-35 247.8 7.6 157 1-184 175-333 (862)
22 KOG4229|consensus 99.9 8.4E-26 1.8E-30 217.4 0.2 161 1-184 228-391 (1062)
23 KOG0162|consensus 79.7 4.7 0.0001 39.3 6.0 41 67-110 478-518 (1106)
24 cd01385 MYSc_type_IX Myosin mo 76.0 3.1 6.8E-05 40.1 3.8 44 67-110 467-510 (692)
25 cd01384 MYSc_type_XI Myosin mo 74.0 3.8 8.2E-05 39.4 3.8 43 68-110 458-500 (674)
26 cd01387 MYSc_type_XV Myosin mo 72.3 4.6 0.0001 38.8 3.9 43 68-110 452-494 (677)
27 cd01381 MYSc_type_VII Myosin m 71.6 6.5 0.00014 37.8 4.7 44 67-110 452-496 (671)
28 cd01378 MYSc_type_I Myosin mot 68.4 4.2 9.1E-05 39.1 2.7 42 69-110 460-501 (674)
29 cd01380 MYSc_type_V Myosin mot 67.7 4.1 9E-05 39.2 2.6 20 91-110 483-502 (691)
30 smart00242 MYSc Myosin. Large 67.3 5.2 0.00011 38.4 3.1 21 90-110 483-503 (677)
31 COG5022 Myosin heavy chain [Cy 66.0 6.2 0.00013 40.8 3.4 19 92-110 546-564 (1463)
32 PTZ00014 myosin-A; Provisional 58.5 11 0.00024 37.2 3.6 43 68-110 553-596 (821)
33 cd01377 MYSc_type_II Myosin mo 55.2 14 0.0003 35.7 3.7 44 67-110 465-510 (693)
34 cd00124 MYSc Myosin motor doma 54.9 12 0.00026 35.9 3.2 44 67-110 452-496 (679)
35 cd01382 MYSc_type_VI Myosin mo 53.3 15 0.00033 35.6 3.6 18 93-110 523-540 (717)
36 cd01379 MYSc_type_III Myosin m 49.1 7.6 0.00017 37.2 0.9 19 92-110 487-505 (653)
37 PF10075 PCI_Csn8: COP9 signal 48.1 19 0.00042 27.1 2.9 39 144-182 100-138 (143)
38 COG4103 Uncharacterized protei 47.5 22 0.00047 27.7 3.0 20 141-160 123-142 (148)
39 PF12728 HTH_17: Helix-turn-he 47.5 20 0.00043 21.9 2.3 24 144-167 4-27 (51)
40 PF00063 Myosin_head: Myosin h 43.3 8.8 0.00019 36.7 0.3 28 89-122 482-509 (689)
41 PHA01976 helix-turn-helix prot 39.9 34 0.00075 21.9 2.7 22 138-159 41-62 (67)
42 PF08667 BetR: BetR domain; I 39.4 12 0.00026 29.2 0.4 20 140-159 50-69 (147)
43 PF02954 HTH_8: Bacterial regu 37.8 39 0.00084 20.1 2.5 20 143-162 20-39 (42)
44 cd01383 MYSc_type_VIII Myosin 37.6 41 0.00089 32.4 3.9 18 93-110 479-496 (677)
45 PRK06369 nac nascent polypepti 37.0 1.8E+02 0.0039 21.8 7.5 77 69-165 9-101 (115)
46 PF13443 HTH_26: Cro/C1-type H 36.6 24 0.00052 22.4 1.5 22 139-160 38-59 (63)
47 TIGR01764 excise DNA binding d 36.6 38 0.00082 19.7 2.4 23 144-166 4-26 (49)
48 PF01381 HTH_3: Helix-turn-hel 36.4 32 0.00069 21.0 2.1 21 138-158 35-55 (55)
49 KOG0164|consensus 35.6 18 0.00038 35.4 1.0 44 67-110 466-516 (1001)
50 KOG0160|consensus 35.3 37 0.0008 33.8 3.2 25 86-110 476-500 (862)
51 PF01476 LysM: LysM domain; I 34.3 56 0.0012 18.9 2.8 39 138-177 3-44 (44)
52 cd04762 HTH_MerR-trunc Helix-T 33.0 51 0.0011 19.0 2.5 24 144-167 3-26 (49)
53 PF12244 DUF3606: Protein of u 33.0 58 0.0012 21.0 2.9 30 134-163 13-42 (57)
54 cd01386 MYSc_type_XVIII Myosin 30.7 61 0.0013 31.8 3.8 19 92-110 515-535 (767)
55 KOG4229|consensus 28.0 49 0.0011 33.7 2.7 44 67-110 517-561 (1062)
56 TIGR02899 spore_safA spore coa 27.6 60 0.0013 18.3 2.1 36 142-177 5-43 (44)
57 cd04761 HTH_MerR-SF Helix-Turn 27.1 68 0.0015 18.9 2.4 24 144-167 3-26 (49)
58 PHA02591 hypothetical protein; 27.0 70 0.0015 22.4 2.6 21 143-163 61-81 (83)
59 smart00530 HTH_XRE Helix-turn- 25.9 55 0.0012 18.5 1.8 19 140-158 38-56 (56)
60 PF00376 MerR: MerR family reg 25.5 80 0.0017 18.5 2.4 18 144-161 2-19 (38)
61 smart00497 IENR1 Intron encode 25.0 68 0.0015 19.4 2.1 30 142-171 18-47 (53)
62 PF03683 UPF0175: Uncharacteri 24.8 64 0.0014 21.9 2.1 25 144-168 37-61 (76)
63 PF00356 LacI: Bacterial regul 23.4 1.1E+02 0.0024 18.8 2.8 22 144-165 2-23 (46)
64 PF00325 Crp: Bacterial regula 22.9 1E+02 0.0022 17.7 2.4 19 145-163 6-24 (32)
65 COG2901 Fis Factor for inversi 21.6 78 0.0017 22.8 2.0 20 145-164 75-94 (98)
66 cd07311 terB_like_1 tellurium 21.4 81 0.0018 24.4 2.3 24 139-162 108-131 (150)
67 PF13309 HTH_22: HTH domain 21.3 1E+02 0.0022 20.2 2.5 20 143-162 44-63 (64)
68 PF13411 MerR_1: MerR HTH fami 21.2 1.1E+02 0.0023 19.5 2.6 20 144-163 3-22 (69)
69 PF12844 HTH_19: Helix-turn-he 21.1 95 0.0021 19.5 2.3 21 139-159 39-59 (64)
70 PF13560 HTH_31: Helix-turn-he 20.3 1.1E+02 0.0023 19.5 2.4 22 138-159 41-62 (64)
71 KOG0161|consensus 20.0 75 0.0016 34.5 2.4 22 89-110 563-584 (1930)
No 1
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=5.5e-41 Score=313.41 Aligned_cols=161 Identities=27% Similarity=0.402 Sum_probs=151.3
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++||||||||++|++|||||||||||++|++++++++|+|.++.+|+||++++ ..++++||+. |+.+++||+.+
T Consensus 165 a~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~al~~l- 243 (671)
T cd01381 165 AKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFADIRSAMKVL- 243 (671)
T ss_pred EEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999887 5678999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|.+.+. ...+.+.+.|.+.+..||+||||+.++|
T Consensus 244 ---G~~~~e~~~i~~il-----------aaIL------hLGni~F~~~~~--~~~~~~~i~~~~~l~~~a~LLgv~~~~L 301 (671)
T cd01381 244 ---MFTDQEIWEIFKLL-----------AAIL------HIGNLRFEATEV--DNLAACEVDDTPNLQRVAQLLGVPIQDL 301 (671)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhcceEEeeccC--CCCCceeeCChHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 999999987653 1246788999999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCccccC
Q psy8603 159 LAALTAKHARASDETLVINYRLPEVL 184 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea~ 184 (184)
.++||++++.++||.+++|++++||.
T Consensus 302 ~~~lt~~~~~~~~e~i~~~~~~~qA~ 327 (671)
T cd01381 302 MDALTSRTIFTRGETVVTPLSREQAV 327 (671)
T ss_pred hhhhceEEEEeCCceEEecCCHHHHH
Confidence 99999999999999999999999873
No 2
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=6.8e-41 Score=313.85 Aligned_cols=158 Identities=30% Similarity=0.429 Sum_probs=150.1
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCc-ccccccccccccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKI-ESYHYLNRIELELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~-~~y~yl~~~~~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|+++ .+|+||++++...++++|+. |+.+++||+.+
T Consensus 180 a~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~d~~~f~~~~~al~~l- 258 (693)
T cd01377 180 ADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELTIPGVDDAEEFKLTDEAFDIL- 258 (693)
T ss_pred EEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCccCCCCcHHHHHHHHHHHHHHc-
Confidence 6899999999999999999999999999999999999999999975 99999999887788999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|.+... ++.+.+.|.+.+..||+||||++++|
T Consensus 259 ---G~~~~e~~~i~~iL-----------aaIL------hLGni~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L 314 (693)
T cd01377 259 ---GFSDEEKNSIFKIV-----------AAIL------HLGNIKFKQRQR----EEQAELDGTEEADKAAHLLGVNSADL 314 (693)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhcceEEEecCC----CCccccCChHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 999999988643 46678899999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.++||.+++|++++||
T Consensus 315 ~~~l~~~~~~~~~e~i~~~~~~~~A 339 (693)
T cd01377 315 LKALLHPRIKVGREWVTKGQNVEQV 339 (693)
T ss_pred HHHhcceEEEECCeeEeeCCCHHHH
Confidence 9999999999999999999999987
No 3
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.7e-42 Score=328.79 Aligned_cols=158 Identities=26% Similarity=0.398 Sum_probs=150.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|.|++|||||||||+|+.+||||||||||++|.++..+..+++..|++|.|+++++ ..++++||++ |+.++.||+++
T Consensus 235 A~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~t~~Alkti- 313 (1463)
T COG5022 235 AKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKITLDALKTI- 313 (1463)
T ss_pred hhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHHHHHHHHHh-
Confidence 78999999999999999999999999999999777777788889999999999997 6799999988 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |+|||+|..++ ++.+.++|.+.++.+|.|||||++.|
T Consensus 314 ---Gi~~eeq~~IF~iL-----------AaIL------hiGNIef~~~r-----~g~a~~~~~~~~~~~c~LLgId~~~f 368 (1463)
T COG5022 314 ---GIDEEEQDQIFKIL-----------AAIL------HIGNIEFKEDR-----NGAAIFSDNSVLDKACYLLGIDPSLF 368 (1463)
T ss_pred ---CCChHHHHHHHHHH-----------HHHH------hhcceeeeecc-----cchhhcCCchHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 99999999875 57788999999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCccccC
Q psy8603 159 LAALTAKHARASDETLVINYRLPEVL 184 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea~ 184 (184)
.++|++++|+++||.|..|++..||+
T Consensus 369 ~k~lvk~~ikt~~E~i~~~~n~~QA~ 394 (1463)
T COG5022 369 VKWLVKRQIKTGGEWIVVPLNLEQAL 394 (1463)
T ss_pred HHHHHHhHhhcCceEEEecCCHHHHH
Confidence 99999999999999999999999985
No 4
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=5.8e-41 Score=318.00 Aligned_cols=161 Identities=29% Similarity=0.436 Sum_probs=148.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccccccccccCCCCCccc-hHHHHHHHHhhhc
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELPSFPGAS-NETLLQKFNTVHR 79 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~dd~~-f~~l~~al~~l~~ 79 (184)
|+|++|||||||||+|++||||||||||||+|++++++++|+|.++.+|+||+++...++++||+. |+.+++||+.+
T Consensus 264 a~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~dD~~~f~~~~~A~~~l-- 341 (821)
T PTZ00014 264 GSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGIDDVKDFEEVMESFDSM-- 341 (821)
T ss_pred EEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCCCCccCCCCchHHHHHHHHHHHHHc--
Confidence 689999999999999999999999999999999999999999999999999998777889999998 99999999999
Q ss_pred CCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecC--HHHHHHHHHhcCCCHHH
Q psy8603 80 DNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRN--TEVVVLISELLRVKKET 157 (184)
Q Consensus 80 ~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~--~~~l~~~a~LLgv~~~~ 157 (184)
||+++++..||++| |||| |||||+|.+.... +..+.+.+.+ .+.+..+|+||||+.++
T Consensus 342 --g~s~~e~~~If~il-----------aaIL------hLGNi~F~~~~~~-~~~~~~~i~~~~~~~l~~~a~LLgv~~~~ 401 (821)
T PTZ00014 342 --GLSESQIEDIFSIL-----------SGVL------LLGNVEIEGKEEG-GLTDAAAISDESLEVFNEACELLFLDYES 401 (821)
T ss_pred --CCCHHHHHHHHHHH-----------HHHH------hhcceeEeccccC-CCCCceeccCCCHHHHHHHHHHhCCCHHH
Confidence 99999999999999 9999 9999999876431 1234556654 56999999999999999
Q ss_pred HHHhHhhceEEecCeEEEEeCCcccc
Q psy8603 158 LLAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 158 L~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
|.++||++++.++||.+++|+|++||
T Consensus 402 L~~~L~~~~~~~~~e~i~~~~~~~qA 427 (821)
T PTZ00014 402 LKKELTVKVTYAGNQKIEGPWSKDES 427 (821)
T ss_pred HHHHhhceEEEeCCeeEecCCCHHHH
Confidence 99999999999999999999999987
No 5
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=1.2e-40 Score=311.31 Aligned_cols=158 Identities=28% Similarity=0.422 Sum_probs=148.7
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++||||||||++|++||||||||||||+|++++++++|+|.++.+|+||++++ ..++++||+. |+.+++||+.+
T Consensus 170 a~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~l- 248 (677)
T cd01383 170 AKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHTLVEALDIV- 248 (677)
T ss_pred EEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999986 5678999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||+|| |||| |||||+|.+.++ ++.+.+.+.+.+..||+||||+.++|
T Consensus 249 ---G~~~~e~~~I~~iL-----------aaIL------hLGNi~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L 304 (677)
T cd01383 249 ---HISKEDQENVFAML-----------AAVL------WLGNVSFTVIDN----ENHVEPVADEALSTAAKLIGCNIEDL 304 (677)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhcceEEEecCC----CcccccCChHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 999999987643 34566778889999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.++||.+.+|++++||
T Consensus 305 ~~~l~~~~~~~~~e~~~~~~~~~qa 329 (677)
T cd01383 305 MLALSTRKMHVNNDNIVQKLTLQQA 329 (677)
T ss_pred HHHhhhcEEEeCCceEeecCCHHHH
Confidence 9999999999999999999999997
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=3.1e-40 Score=309.37 Aligned_cols=159 Identities=28% Similarity=0.385 Sum_probs=147.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|++++++++|+|.++.+|+||++++ ..++++||+. |+.+++||+.+
T Consensus 171 a~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f~~~~~al~~l- 249 (691)
T cd01380 171 ANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDFNATVQALTLL- 249 (691)
T ss_pred EEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999987 5678899998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|.+.++ ++.+...+.+.+..||+||||++++|
T Consensus 250 ---g~s~~e~~~I~~iL-----------aaIL------hLGni~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L 305 (691)
T cd01380 250 ---GISEEQQMDIFKLL-----------AALL------HLGNIEIEATRN----DSSSISPKDENLQIACELLGVDASDL 305 (691)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hccceeeeccCC----ccceecCChHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 999999998653 23234456789999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCccccC
Q psy8603 159 LAALTAKHARASDETLVINYRLPEVL 184 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea~ 184 (184)
.++||++++.++||.+++|+|++||.
T Consensus 306 ~~~l~~~~~~~~~e~i~~~~~~~qA~ 331 (691)
T cd01380 306 RKWLVKRQIVTRSEKIVKPLTKEQAI 331 (691)
T ss_pred HHHHHhCEEEECCeeEEecCCHHHHH
Confidence 99999999999999999999999983
No 7
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=4.2e-40 Score=308.38 Aligned_cols=161 Identities=47% Similarity=0.645 Sum_probs=149.5
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccccccccccC-CCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELEL-PSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~-~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++||||||||++|++||||||||||||+|++++++.+++|.++.+|+||++++... +++||+. |..+++||+.+
T Consensus 176 a~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~~~~~al~~l- 254 (692)
T cd01385 176 AVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFERLKQAMEMV- 254 (692)
T ss_pred EEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999888999999987543 5889988 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||++++++.||++| |||| |||||+|.+..+. +.++.+.+.|++.+..||+||||++++|
T Consensus 255 ---G~~~~~~~~i~~iL-----------aaIL------hLGni~F~~~~~~-~~~~~~~~~~~~~l~~~a~LLgv~~~~L 313 (692)
T cd01385 255 ---GFLAATQKQIFAVL-----------SAVL------LLGNVTYKKRATY-HRDESLEVGNPEVVDLLSQLLKVKRETL 313 (692)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hccCceeeecccC-CCCCceecCCHHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 9999999876431 2356788999999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.++||.+++|++++||
T Consensus 314 ~~~l~~~~~~~~~e~i~~~~~~~qa 338 (692)
T cd01385 314 MEALTKKRTVTVNETLILPYSLSEA 338 (692)
T ss_pred HHHhccCeEEeCCCeEEecCCHHHH
Confidence 9999999999999999999999987
No 8
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=8.1e-40 Score=305.85 Aligned_cols=157 Identities=29% Similarity=0.425 Sum_probs=149.0
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++||||||||++|++|||||||||||++|++++++++|+|.++.+|+||++++ ..+++++|+. |+.+++||+.+
T Consensus 168 a~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~l- 246 (674)
T cd01378 168 GKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKETQNAMKVI- 246 (674)
T ss_pred EEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999987 4788999988 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|...++ +.+.+.|.+.++.||+||||+.++|
T Consensus 247 ---G~s~~e~~~i~~il-----------aaIL------hLGni~f~~~~~-----~~~~~~~~~~l~~~a~LLgv~~~~L 301 (674)
T cd01378 247 ---GFSEDEQDEIFRIV-----------AAIL------HLGNVQFAENGD-----GAAVISDKDVLDFAAYLLGVDPSEL 301 (674)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhcceEEeccCC-----CccccCChHHHHHHHHHcCCCHHHH
Confidence 99999999999999 9999 999999987653 3478899999999999999999999
Q ss_pred HHhHhhceEEecC----eEEEEeCCcccc
Q psy8603 159 LAALTAKHARASD----ETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~g----e~i~~~~~~~ea 183 (184)
.++|+++++.++| |.+++|++++||
T Consensus 302 ~~~l~~~~~~~~~~~~~e~i~~~~~~~~a 330 (674)
T cd01378 302 EKALTSRTIETGGGGRGEVYDVPLNVEQA 330 (674)
T ss_pred HHHhcccEEEeCCCCCceeEEecCCHHHH
Confidence 9999999999998 999999999987
No 9
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=7.5e-40 Score=306.08 Aligned_cols=161 Identities=31% Similarity=0.433 Sum_probs=149.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|+++++|+.|+|.++.+|+||++++ ..+++.+|+. |+.+++||+.+
T Consensus 166 a~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~l- 244 (677)
T cd01387 166 AITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRRLLAAMEVL- 244 (677)
T ss_pred EEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999887 4567888888 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||++++++.||+|| |||| |||||+|..... +..+.+.+.+++.+..+|+||||+.++|
T Consensus 245 ---g~~~~e~~~i~~iL-----------aaIL------hLGni~F~~~~~--~~~~~~~~~~~~~l~~~a~LLgv~~~~L 302 (677)
T cd01387 245 ---GFSSEDQDSIFRIL-----------ASIL------HLGNVYFEKRET--DAQEVASVVSAREIQAVAELLQISPEGL 302 (677)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhcCeEEeeccC--CCCcccccCCHHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 999999987642 1235578899999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCccccC
Q psy8603 159 LAALTAKHARASDETLVINYRLPEVL 184 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea~ 184 (184)
.++||++.+.++||.+.+|++++||.
T Consensus 303 ~~~lt~~~~~~~~e~i~~~~~~~~a~ 328 (677)
T cd01387 303 QKAITFKVTETRREKIFTPLTVESAV 328 (677)
T ss_pred HHHhccCeEEeCCceEeccCCHHHHH
Confidence 99999999999999999999999983
No 10
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.1e-39 Score=304.75 Aligned_cols=157 Identities=25% Similarity=0.358 Sum_probs=145.0
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++||||||||++|++|||||||||||++| +++++++|+|.++..|+||++++ ..+++++|+. |+.+++||+.+
T Consensus 171 a~i~~yLLEksRv~~~~~gErnfHIFYqLl~g-~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~~~~al~~l- 248 (674)
T cd01384 171 AAIRTYLLERSRVCQISDPERNYHCFYQLCAA-PPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLATRRAMDVV- 248 (674)
T ss_pred EEEEEEecccCceeecCCCCCchhHHHHHHcC-CHHHHHHcCCCChHhCccccCCCCccccccchHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999 88899999999999999999987 5678899988 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeec---CHHHHHHHHHhcCCCH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVR---NTEVVVLISELLRVKK 155 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~ 155 (184)
||+++++..||++| |||| |||||+|.+... .+++.+. +.+.+..||+||||+.
T Consensus 249 ---G~~~~e~~~I~~iL-----------aaIL------hLGni~F~~~~~----~~~~~~~~~~~~~~l~~~a~LLgv~~ 304 (674)
T cd01384 249 ---GISEEEQDAIFRVV-----------AAIL------HLGNIEFAKGEE----IDSSVLKDEKSEFHLKTAAELLMCDE 304 (674)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hccceeeeccCC----CCcccccCcccHHHHHHHHHHhCCCH
Confidence 99999999999999 9999 999999987643 2334443 4689999999999999
Q ss_pred HHHHHhHhhceEEecCeEEEEeCCcccc
Q psy8603 156 ETLLAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 156 ~~L~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
++|.++|+++++.++||.+++|++++||
T Consensus 305 ~~L~~~L~~~~~~~~~e~i~~~~~~~~a 332 (674)
T cd01384 305 KALEDALCKRVMVTPEEVITKPLDPDSA 332 (674)
T ss_pred HHHHHHhcccEEEeCCceEEecCCHHHH
Confidence 9999999999999999999999999987
No 11
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=2.5e-39 Score=303.13 Aligned_cols=160 Identities=37% Similarity=0.494 Sum_probs=149.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccccccccc-cCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIEL-ELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~-~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++||||||||++|++||||||||||||+|++++++++|+|.++++|+||+++.. ..++++|+. |+.+++||+.+
T Consensus 166 a~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~l- 244 (679)
T cd00124 166 AKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEELKEALKSL- 244 (679)
T ss_pred EEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHHHHHHHHHc-
Confidence 689999999999999999999999999999999999999999999999999999874 458899988 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|.+.... ..+.+.+.|.+.++.+|+||||+.++|
T Consensus 245 ---g~~~~e~~~i~~iL-----------aaIL------hLGni~f~~~~~~--~~~~~~~~~~~~l~~~a~LLgv~~~~L 302 (679)
T cd00124 245 ---GFSEEEIESIFRIL-----------AAIL------HLGNIEFKSVGGE--GQEAAEVKNTEVLSKAAELLGLDPEEL 302 (679)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhcCeeEEecCCC--CcceeecCCHHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 9999999887542 122478899999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.++||.+++|++++||
T Consensus 303 ~~~l~~~~~~~~~~~~~~~~~~~~a 327 (679)
T cd00124 303 EEALTYKVTKVGGEVITIPLTKEEA 327 (679)
T ss_pred HHHhhccEEEeCCceEEecCCHHHH
Confidence 9999999999999999999999987
No 12
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=4.8e-39 Score=299.51 Aligned_cols=162 Identities=25% Similarity=0.401 Sum_probs=145.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHH-hhcCCCCcccccccccccc-cCCCCCc----cc-hHHHHHH
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDR-HSLHLKKIESYHYLNRIEL-ELPSFPG----AS-NETLLQK 73 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~-~~l~L~~~~~y~yl~~~~~-~~~~~dd----~~-f~~l~~a 73 (184)
|+|++||||||||++|++|||||||||||++|++++++ +.|+|.++..|+||+++.. .+++++| +. |+.+++|
T Consensus 166 a~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~~~f~~~~~a 245 (653)
T cd01379 166 ARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYKDQFEQIEQC 245 (653)
T ss_pred EEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHHHHHHHHHHH
Confidence 68999999999999999999999999999999997765 7899999999999998873 3555543 45 9999999
Q ss_pred HHhhhcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCC
Q psy8603 74 FNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRV 153 (184)
Q Consensus 74 l~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv 153 (184)
|+.+ ||++++++.||+|| |||| |||||+|.+.+.. ...+.+.+.|.+.+..+|+||||
T Consensus 246 l~~l----g~~~~e~~~I~~iL-----------aaIL------hLGNi~F~~~~~~-~~~~~~~i~~~~~l~~~A~LLgv 303 (653)
T cd01379 246 FRVI----GFTDEEVGSVYRIL-----------AAIL------NLGDIEFGSVASE-HQTDKSRVSNVAALENAASLLCI 303 (653)
T ss_pred HHHc----CCCHHHHHHHHHHH-----------HHHH------hhcceEEEecccc-CCCcccccCCHHHHHHHHHHhCC
Confidence 9999 99999999999999 9999 9999999876531 12356788999999999999999
Q ss_pred CHHHHHHhHhhceEEecCeEEEEeCCccccC
Q psy8603 154 KKETLLAALTAKHARASDETLVINYRLPEVL 184 (184)
Q Consensus 154 ~~~~L~~aLt~~~~~~~ge~i~~~~~~~ea~ 184 (184)
+.++|.++||++++.++||.+++|++++||.
T Consensus 304 ~~~~L~~~L~~~~~~~~ge~i~~~~~~~qA~ 334 (653)
T cd01379 304 RSDELQEALTSHCVVTRGETIVRHNTVEKAT 334 (653)
T ss_pred CHHHHHHHhcccEEEeCCceeeecCCHHHHH
Confidence 9999999999999999999999999999873
No 13
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=4.6e-39 Score=301.16 Aligned_cols=160 Identities=34% Similarity=0.495 Sum_probs=148.2
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++||||||||++|++|||||||||||++|++++++++|+|.++.+|+||++++ ..+++.+|+. |+.+++||+.+
T Consensus 174 a~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~~~~al~~l- 252 (677)
T smart00242 174 AKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFKETLNAMRVL- 252 (677)
T ss_pred EEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999985 5678889988 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|.+.+.. +....+.+.+.+..||+||||+.++|
T Consensus 253 ---G~~~~e~~~I~~iL-----------aaIL------hLGni~F~~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L 309 (677)
T smart00242 253 ---GFSEEEQESIFKIL-----------AAIL------HLGNIEFEEGRND---NAASTVKDKEELENAAELLGVDPEEL 309 (677)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhcceeEEecCCC---CcccccCCHHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 9999999876541 22234889999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCccccC
Q psy8603 159 LAALTAKHARASDETLVINYRLPEVL 184 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea~ 184 (184)
.++|+++++.++||.+++|++++||.
T Consensus 310 ~~~l~~~~~~~~~e~~~~~~~~~~a~ 335 (677)
T smart00242 310 EKALTKRKIKTGGEVITKPLNVEQAL 335 (677)
T ss_pred HHHhcccEEEeCCceEEecCCHHHHH
Confidence 99999999999999999999999873
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.1e-38 Score=299.71 Aligned_cols=159 Identities=27% Similarity=0.420 Sum_probs=143.3
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccccccccc-----------------------
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIEL----------------------- 57 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~----------------------- 57 (184)
|+|++||||||||++|++||||||||||||+|++++++++|+|.++..|+||+++..
T Consensus 170 a~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 249 (717)
T cd01382 170 GFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQNRKSPEHLK 249 (717)
T ss_pred EEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999999999997531
Q ss_pred ----cCCCCCccc-hHHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCC
Q psy8603 58 ----ELPSFPGAS-NETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHH 132 (184)
Q Consensus 58 ----~~~~~dd~~-f~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~ 132 (184)
..+++||+. |+.+++||+.+ ||+++++..||+|| |||| |||||+|.+.+. .
T Consensus 250 ~~~~~~~~~dD~~~f~~~~~Al~~l----g~s~~e~~~i~~iL-----------aaIL------hLGni~F~~~~~---~ 305 (717)
T cd01382 250 KGALKDPLLDDYGDFQRMCVALKKI----GLDDTEKLDLFRVV-----------AGVL------HLGNIDFEEAGS---T 305 (717)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHc----CCCHHHHHHHHHHH-----------HHHH------hcCceeEeccCC---C
Confidence 235678888 99999999999 99999999999999 9999 999999987543 1
Q ss_pred Cceee--ecCHHHHHHHHHhcCCCHHHHHHhHhhceEE-----ecCeEEEEeCCcccc
Q psy8603 133 DESVT--VRNTEVVVLISELLRVKKETLLAALTAKHAR-----ASDETLVINYRLPEV 183 (184)
Q Consensus 133 ~~~~~--~~~~~~l~~~a~LLgv~~~~L~~aLt~~~~~-----~~ge~i~~~~~~~ea 183 (184)
.+.|. ..+.+.+..||+||||++++|.++||++++. ++||.+.+|++++||
T Consensus 306 ~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA 363 (717)
T cd01382 306 SGGCNVKNQSEQSLEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQA 363 (717)
T ss_pred CCcceecCCCHHHHHHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHH
Confidence 23333 3578899999999999999999999999998 889999999999987
No 15
>KOG0164|consensus
Probab=100.00 E-value=2e-39 Score=296.14 Aligned_cols=156 Identities=31% Similarity=0.446 Sum_probs=147.1
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCC-CcccccccccccccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLK-KIESYHYLNRIELELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~-~~~~y~yl~~~~~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
+.|.+|||||||||.|.+|||||||||||+.|++++++.+|+|+ ++..|.||+++...+.+++|++ |+.++.||++|
T Consensus 178 G~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg~~~v~sinD~~dfk~V~~Am~vI- 256 (1001)
T KOG0164|consen 178 GHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQGSAKVSSINDASDFKAVQKAMRVI- 256 (1001)
T ss_pred chHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhhhhhhcccccHHHHHHHHHHHHHc-
Confidence 35889999999999999999999999999999999999999998 6999999999987788999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++|+..+|+|+ |+|| |||||.|.... ++..+.+...+..+|+||++++++|
T Consensus 257 ---gFs~eEVe~v~~ii-----------AavL------hLGNv~f~~~e------d~~~~~~~~~l~~~aell~v~~del 310 (1001)
T KOG0164|consen 257 ---GFSEEEVESVLSII-----------AAVL------HLGNVEFADNE------DSSGIVNGAQLKYIAELLSVTGDEL 310 (1001)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hccceEEeecC------cccccchhHHHHHHHHHHcCCHHHH
Confidence 99999999999999 9999 99999999864 4455667799999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.++||.+.+++++.||
T Consensus 311 ~~aL~~Rtvaa~~e~v~k~hn~~qA 335 (1001)
T KOG0164|consen 311 ERALTSRTVAAGGEIVLKQHNVEQA 335 (1001)
T ss_pred HHHHHHHHHHhccchhhccccHHHH
Confidence 9999999999999999999999987
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=2.2e-38 Score=297.01 Aligned_cols=158 Identities=35% Similarity=0.523 Sum_probs=139.0
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++||||||||+.|++|||||||||||++|++++++++|+|.++.+|+||++++ ..+++.+|+. |+.+++||+.+
T Consensus 169 ~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~~l~~al~~l- 247 (689)
T PF00063_consen 169 AKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQELKDALKTL- 247 (689)
T ss_dssp EEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHHHHHHHHHHT-
T ss_pred cceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhhhhhhhhccc-
Confidence 58999999999999999999999999999999999999999999999999999966 5667888888 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|.+..+ ++.+.+.|.+.++.+|+||||+.++|
T Consensus 248 ---g~~~~e~~~I~~iL-----------aaIL------hLGni~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L 303 (689)
T PF00063_consen 248 ---GFSDEEIDDIFRIL-----------AAIL------HLGNIEFVEDES----DESAEVENSEELQKAAELLGVDSEEL 303 (689)
T ss_dssp ---T--HHHHHHHHHHH-----------HHHH------HHTTSSEEEETT----SSSEEESTSHHHHHHHHHTTS-HHHH
T ss_pred ---cCchhHHHHHHHHH-----------HHHh------hhcccccccccc----ccceeechHHHHHHhhhhcCCCHHHH
Confidence 99999999999999 9999 999999998864 56778999999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.+++|.+++|++++||
T Consensus 304 ~~~l~~~~~~~~~e~~~~~~~~~~a 328 (689)
T PF00063_consen 304 EKALTTRTIKVGGETVTKPLSVEQA 328 (689)
T ss_dssp HHHHHSEEEESTTSEEEEE-BHHHH
T ss_pred HHHHhhccccccccccccccchhhh
Confidence 9999999999999999999999987
No 17
>KOG0162|consensus
Probab=100.00 E-value=3.7e-36 Score=275.21 Aligned_cols=157 Identities=23% Similarity=0.380 Sum_probs=147.8
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
++|++|||||||||.|.+|||||||||||++|++.+.|..+|+..|+.|.|++.++ ..++++||.. |++++.||+++
T Consensus 186 gkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq~Tl~AM~vI- 264 (1106)
T KOG0162|consen 186 GKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQETLHAMKVI- 264 (1106)
T ss_pred chhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHHHHHHHheec-
Confidence 57999999999999999999999999999999999999999999999999999988 6889999987 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
|+.++||+.||+++ |+|| |||||.|.+. +.-+.|.+.+.++..|.||||+...|
T Consensus 265 ---Gi~~~eQ~~v~rmv-----------a~IL------~lGNIsF~Ee------~~~a~V~~~~~~~f~ayLlgi~s~~l 318 (1106)
T KOG0162|consen 265 ---GINQEEQDEVLRMV-----------AGIL------HLGNISFIEE------GNYAAVSDKSVLEFPAYLLGIDSARL 318 (1106)
T ss_pred ---cCChHHHHHHHHHH-----------HHHH------hccceeEEee------CCcceeccchHHHhHHHHhcCCHHHH
Confidence 99999999999999 9999 9999999984 35678999999999999999999999
Q ss_pred HHhHhhceEEec----CeEEEEeCCccccC
Q psy8603 159 LAALTAKHARAS----DETLVINYRLPEVL 184 (184)
Q Consensus 159 ~~aLt~~~~~~~----ge~i~~~~~~~ea~ 184 (184)
.++||.|.|..+ .|.+..|++++||.
T Consensus 319 ~~~Lt~R~M~s~~G~kr~~~~v~LNv~QA~ 348 (1106)
T KOG0162|consen 319 EEKLTSRIMESKWGGKREVIHVPLNVEQAS 348 (1106)
T ss_pred HHHHHHHHHhhcccccceeEEecccHHHHH
Confidence 999999998763 59999999999983
No 18
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=3.2e-35 Score=277.64 Aligned_cols=146 Identities=24% Similarity=0.199 Sum_probs=126.5
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc--ccCCCCCccc-hHHHHHHHHhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE--LELPSFPGAS-NETLLQKFNTV 77 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~--~~~~~~dd~~-f~~l~~al~~l 77 (184)
|+|++|||||||||+|++||||||||||||+|++++++++|+|.++..+.+.+... ...++++|+. |+.+++||+.+
T Consensus 167 a~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~~~~~Al~~l 246 (767)
T cd01386 167 ASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFSRLQQAMEVL 246 (767)
T ss_pred EEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999999999999999999999765433332222 2245677877 99999999999
Q ss_pred hcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHH
Q psy8603 78 HRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKET 157 (184)
Q Consensus 78 ~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~ 157 (184)
||+++++..||+|| |||| |||||+|... .+.+.+.+.+.+..||.||||+.++
T Consensus 247 ----Gfs~~e~~~If~iL-----------aaIL------hLGNi~f~~~------~~~~~~~~~~~~~~vA~LLgv~~~~ 299 (767)
T cd01386 247 ----GISEGEQRAIWRVL-----------AAIY------HLGAAGATKV------AGRKQFARPEWAQKAAELLGCPLEE 299 (767)
T ss_pred ----CCCHHHHHHHHHHH-----------HHHH------hccCceeeec------CCccccCCHHHHHHHHHHhCCCHHH
Confidence 99999999999999 9999 9999999862 2346788999999999999999999
Q ss_pred HHHhHhhceEEecCeE
Q psy8603 158 LLAALTAKHARASDET 173 (184)
Q Consensus 158 L~~aLt~~~~~~~ge~ 173 (184)
|.++|++++++.+++.
T Consensus 300 L~~al~~~~~~~~~~~ 315 (767)
T cd01386 300 LSSATFKHTLRGGINQ 315 (767)
T ss_pred HHHHhcccEEeeccee
Confidence 9999999988777543
No 19
>KOG0163|consensus
Probab=99.97 E-value=6.7e-33 Score=254.57 Aligned_cols=159 Identities=27% Similarity=0.403 Sum_probs=139.5
Q ss_pred eeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccccccccc----------cC------------
Q psy8603 2 VVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIEL----------EL------------ 59 (184)
Q Consensus 2 ~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~----------~~------------ 59 (184)
-|++|||||||||.|+.+||||||||||++|+++++++.|.|..|++|+||+.+.. .+
T Consensus 224 yvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~nr~S~~~~~~ 303 (1259)
T KOG0163|consen 224 YVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPGNRKSKNHQQK 303 (1259)
T ss_pred hhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcccccCcccccc
Confidence 47899999999999999999999999999999999999999999999999996630 01
Q ss_pred -----CCCCccc-hHHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCC
Q psy8603 60 -----PSFPGAS-NETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHD 133 (184)
Q Consensus 60 -----~~~dd~~-f~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~ 133 (184)
|-+||-. |..+..||..+ |++++|...||+++ |||| |||||+|....++. .
T Consensus 304 ~~~kD~iidD~~dF~rl~~Al~~~----Glsd~Ekl~i~s~v-----------A~vL------HLGNieFEE~~dds--r 360 (1259)
T KOG0163|consen 304 GSLKDPIIDDYQDFHRLEKALKLL----GLSDTEKLFIWSTV-----------AAVL------HLGNIEFEEIPDDS--R 360 (1259)
T ss_pred CcccCcccccHHHHHHHHHHHHhc----CCChHHHHHHHHHH-----------HHHH------HccccchhcccCcC--C
Confidence 2246666 99999999999 99999999999999 9999 99999998876432 3
Q ss_pred ceeeec--CHHHHHHHHHhcCCCHHHHHHhHhhceEEe-----cCeEEEEeCCcccc
Q psy8603 134 ESVTVR--NTEVVVLISELLRVKKETLLAALTAKHARA-----SDETLVINYRLPEV 183 (184)
Q Consensus 134 ~~~~~~--~~~~l~~~a~LLgv~~~~L~~aLt~~~~~~-----~ge~i~~~~~~~ea 183 (184)
+.|.+. +...+..+|+|||++.++|.-.||.+.|.+ +|-.|..|+.+.||
T Consensus 361 GGC~v~n~seqsL~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA 417 (1259)
T KOG0163|consen 361 GGCQVSNGSEQSLTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEA 417 (1259)
T ss_pred CceecccCchhhHHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhh
Confidence 456665 578999999999999999999999998854 57889999999987
No 20
>KOG0161|consensus
Probab=99.97 E-value=8e-32 Score=268.95 Aligned_cols=158 Identities=29% Similarity=0.415 Sum_probs=150.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCC-cccccccccccccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKK-IESYHYLNRIELELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~-~~~y~yl~~~~~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|.|++||||||||++|+++||||||||||++|.++.++..|.|++ +.+|.|+.++...++++||+. |..+..||+.+
T Consensus 254 a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~~i~g~dd~eef~~t~~a~~il- 332 (1930)
T KOG0161|consen 254 ADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGESTIPGVDDAEEFQETDEAMDIL- 332 (1930)
T ss_pred hhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccCCCCCcchHHHHHHHHHHHHHh-
Confidence 679999999999999999999999999999999999999999985 899999999988899999999 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..+|+++ |+|+ |+||+.|..... .+.+.+.+.+....+|.|||++.++|
T Consensus 333 ---gfs~~E~~~~~~i~-----------sail------hlGn~~f~~~~~----~~qa~~~~~~~a~ka~~llg~~~~~~ 388 (1930)
T KOG0161|consen 333 ---GFSEEEKISIFRIV-----------SAIL------HLGNIKFKQEPR----EEQAEFDNTEVADKACHLLGINVEEF 388 (1930)
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------Hhcchhhhcccc----ccccCCCCchHHHHHHHHcCCCHHHH
Confidence 99999999999999 9999 999999998753 57788999999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.+++++++++++++.+.+..+.+||
T Consensus 389 ~~al~~priKvg~e~v~k~q~~~q~ 413 (1930)
T KOG0161|consen 389 LKALLRPRIKVGREWVSKAQNVEQV 413 (1930)
T ss_pred HHHhcccceeccchhhhhcchHHHH
Confidence 9999999999999999999988876
No 21
>KOG0160|consensus
Probab=99.97 E-value=6.2e-31 Score=247.79 Aligned_cols=157 Identities=25% Similarity=0.353 Sum_probs=145.0
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|.|++||||||||+.++++|||||||||+|+|.+ +++.+|+|..+..|.|+++++ ..+++++|+. |..++.||..+
T Consensus 175 A~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~-~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~~t~~A~~~v- 252 (862)
T KOG0160|consen 175 AKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAP-EELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFLSTTEAMLFV- 252 (862)
T ss_pred ceeeeEEeecceeeecCccccchHHHHHHhcCCc-hhhhccCcCccccceecccccchhhcccccHHHHHHHHHHHHHh-
Confidence 6799999999999999999999999999999999 999999999999999999998 5788999988 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
|++.+++..||+++ +++| |+||++|..... .+++...+. .+..+|+|||++.+.|
T Consensus 253 ---gi~~~~q~~if~ll-----------a~il------hlGni~f~~~~~----~~~~~~~~~-~~~~~a~Llg~~~~~l 307 (862)
T KOG0160|consen 253 ---GISESHQELIFRLL-----------AAIL------HLGNIQFSSGVE----ETSSSPVDD-HLWTAAELLGCDEEAL 307 (862)
T ss_pred ---cCChHHHHHHHHHH-----------HHHh------ccCceEeecccc----cccccccch-HHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 999999988764 233334444 8999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCccccC
Q psy8603 159 LAALTAKHARASDETLVINYRLPEVL 184 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea~ 184 (184)
...|+.+.+.+++|+|+++++..||+
T Consensus 308 ~~~L~~r~i~~~~e~i~k~l~~~qa~ 333 (862)
T KOG0160|consen 308 EQWLSKRKILTARESIVKPLTLSQAV 333 (862)
T ss_pred HHHHHHHHhhcccceeecccCHHHHH
Confidence 99999999999999999999998874
No 22
>KOG4229|consensus
Probab=99.91 E-value=8.4e-26 Score=217.38 Aligned_cols=161 Identities=29% Similarity=0.402 Sum_probs=149.7
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccC-CCCCccc-hHHHHHHHHhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LEL-PSFPGAS-NETLLQKFNTV 77 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~-~~~dd~~-f~~l~~al~~l 77 (184)
|++..||||||||+.|..+||||||||++++|.+.+++..+.|..+++|.||+++. ..+ ++.++.. |..+..+|..+
T Consensus 228 aki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v~ 307 (1062)
T KOG4229|consen 228 AKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQFIRLEAAMSVV 307 (1062)
T ss_pred chHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhHHHHHHHHHHh
Confidence 67889999999999999999999999999999999999999999999999999988 445 6777777 99999999999
Q ss_pred hcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHH
Q psy8603 78 HRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKET 157 (184)
Q Consensus 78 ~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~ 157 (184)
||..+++.+|++++ +||| |+|||.|...... ..+.+.+.|...+..+|.||.++.+.
T Consensus 308 ----~f~~~~~~si~~~l-----------a~il------~~gni~~~~~~~~--~~d~~~v~~~~~v~~vA~lL~~~~~~ 364 (1062)
T KOG4229|consen 308 ----GFTDKVLGSIFKSL-----------AAIL------HIGNISYIKFALD--QQDSAEVENEEAVERVACLLLIKEKL 364 (1062)
T ss_pred ----ccchhHHHHHHHhc-----------ccce------eecceeHHhhhcc--cccchhcccchHHHHHHHHhhcCHHH
Confidence 99999999999999 9999 9999999876542 46778899999999999999999999
Q ss_pred HHHhHhhceEEecCeEEEEeCCccccC
Q psy8603 158 LLAALTAKHARASDETLVINYRLPEVL 184 (184)
Q Consensus 158 L~~aLt~~~~~~~ge~i~~~~~~~ea~ 184 (184)
|.+++|.++...+||.+..++++++|.
T Consensus 365 l~~alt~~~~~~~ge~~~~~l~~~~A~ 391 (1062)
T KOG4229|consen 365 LQEALTARVNVTRGELLLAPLLVERAV 391 (1062)
T ss_pred hhhhhcccceeeehhhhhhhhhHHHhc
Confidence 999999999999999999999999884
No 23
>KOG0162|consensus
Probab=79.68 E-value=4.7 Score=39.26 Aligned_cols=41 Identities=39% Similarity=0.841 Sum_probs=26.4
Q ss_pred hHHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccce
Q psy8603 67 NETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 67 f~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
.+.+.+.|+.++.++.-.+. .--.++|+||||+|+|+...+
T Consensus 478 Dqa~~qrLn~~~~s~phF~~---~s~~FvIkHYAGdVtYdi~G~ 518 (1106)
T KOG0162|consen 478 DQALLQRLNKLFGSHPHFES---RSNGFVIKHYAGDVTYDIDGF 518 (1106)
T ss_pred HHHHHHHHHHHhcCCCcccc---ccCceEEEEeccceeeecccc
Confidence 56777777755433333321 123578999999999995444
No 24
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=75.98 E-value=3.1 Score=40.05 Aligned_cols=44 Identities=59% Similarity=0.986 Sum_probs=27.7
Q ss_pred hHHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccce
Q psy8603 67 NETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 67 f~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
.+.+.+.|...+.++.+.......--.+.|+||||+|+|.+.-+
T Consensus 467 d~~~l~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gf 510 (692)
T cd01385 467 SQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQIKDF 510 (692)
T ss_pred HHHHHHHHHHHhCCCCCccCCCCCCCeEEEEEecceeeecCCCH
Confidence 34455555554444444333332334688999999999997777
No 25
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=74.02 E-value=3.8 Score=39.40 Aligned_cols=43 Identities=37% Similarity=0.686 Sum_probs=26.1
Q ss_pred HHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccce
Q psy8603 68 ETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 68 ~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
+.+.+.|...+.++.....+...-..+.|+||||+|+|.+.-+
T Consensus 458 ~~f~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gf 500 (674)
T cd01384 458 ETFAQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQTDQF 500 (674)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCeeEEEEecceeeecCCCH
Confidence 3444555444333333332333335788999999999997777
No 26
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=72.28 E-value=4.6 Score=38.84 Aligned_cols=43 Identities=44% Similarity=0.720 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccce
Q psy8603 68 ETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 68 ~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
+.+.+.+..-+.++.........--.+.|+||||+|+|.+--+
T Consensus 452 ~~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gf 494 (677)
T cd01387 452 HTFLQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQVHKF 494 (677)
T ss_pred HHHHHHHHHhccCCccccCCCCCCCeeEEEEeCceeeecCCCh
Confidence 3444455443333343333222234688999999999997666
No 27
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=71.57 E-value=6.5 Score=37.80 Aligned_cols=44 Identities=25% Similarity=0.531 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhhcCCC-CCccccccceeeeeeccCcceeeeccce
Q psy8603 67 NETLLQKFNTVHRDNP-FYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 67 f~~l~~al~~l~~~~g-f~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
.+.+.+.|...+.++. |.......--.+.|+||||+|+|.+.-+
T Consensus 452 d~~f~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gf 496 (671)
T cd01381 452 DQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDTRGF 496 (671)
T ss_pred HHHHHHHHHHHhcCCCCcccCCCCCCCceEEEEecceEeeccCCH
Confidence 3445555544433223 3222222234688899999999997777
No 28
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=68.39 E-value=4.2 Score=39.07 Aligned_cols=42 Identities=31% Similarity=0.557 Sum_probs=24.6
Q ss_pred HHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccce
Q psy8603 69 TLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 69 ~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
.+.+.|..-+.++.........-..+.|+||||+|+|.+--+
T Consensus 460 ~~~~kl~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gf 501 (674)
T cd01378 460 TFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTYSVEGF 501 (674)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCCcEEEEEeceeeeecCcCH
Confidence 444444443332232222223335688899999999997776
No 29
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=67.72 E-value=4.1 Score=39.22 Aligned_cols=20 Identities=35% Similarity=0.772 Sum_probs=17.1
Q ss_pred ceeeeeeccCcceeeeccce
Q psy8603 91 ENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 91 i~~il~~h~ag~V~y~aaIL 110 (184)
--.+.|+||||+|+|++.-+
T Consensus 483 ~~~F~I~HyAG~V~Y~v~gf 502 (691)
T cd01380 483 QTSFTVKHFADDVEYDVDGF 502 (691)
T ss_pred CCeeEEEEccCCcccccccH
Confidence 35688999999999997777
No 30
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=67.32 E-value=5.2 Score=38.40 Aligned_cols=21 Identities=43% Similarity=0.858 Sum_probs=17.3
Q ss_pred cceeeeeeccCcceeeeccce
Q psy8603 90 RENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 90 ~i~~il~~h~ag~V~y~aaIL 110 (184)
.--.+.|+||||+|+|.+.-+
T Consensus 483 ~~~~F~I~H~AG~V~Y~~~gf 503 (677)
T smart00242 483 GRTEFIIKHYAGDVTYDVTGF 503 (677)
T ss_pred CCCeEEEEecceeEeecCccH
Confidence 344688999999999997777
No 31
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=65.99 E-value=6.2 Score=40.84 Aligned_cols=19 Identities=53% Similarity=1.024 Sum_probs=15.6
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
-.++++||||+|.|..--+
T Consensus 546 ~~FvvkHYAgDVeY~veg~ 564 (1463)
T COG5022 546 NKFVVKHYAGDVEYDVEGF 564 (1463)
T ss_pred CceEEEeecccceeeccch
Confidence 3688999999999995555
No 32
>PTZ00014 myosin-A; Provisional
Probab=58.53 E-value=11 Score=37.15 Aligned_cols=43 Identities=23% Similarity=0.526 Sum_probs=25.5
Q ss_pred HHHHHHHHhhhcCCC-CCccccccceeeeeeccCcceeeeccce
Q psy8603 68 ETLLQKFNTVHRDNP-FYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 68 ~~l~~al~~l~~~~g-f~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
+.+.+.|..-+.++. |.......--.+.|.||||+|+|.+.-+
T Consensus 553 ~~f~~kl~~~~~~~~~f~~~~~~~~~~F~I~HyAG~V~Y~~~gf 596 (821)
T PTZ00014 553 EKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQYCASGF 596 (821)
T ss_pred HHHHHHHHHHhcCCCCccCCCCCCCCceEEEEeceeeeeccCcH
Confidence 344555544433333 3322222234678899999999997777
No 33
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=55.24 E-value=14 Score=35.73 Aligned_cols=44 Identities=25% Similarity=0.474 Sum_probs=25.7
Q ss_pred hHHHHHHHHhhhcCCC-C-CccccccceeeeeeccCcceeeeccce
Q psy8603 67 NETLLQKFNTVHRDNP-F-YEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 67 f~~l~~al~~l~~~~g-f-~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
.+.+.+.|...+.++. + .......--.+.|+||||+|+|.+.-+
T Consensus 465 D~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gf 510 (693)
T cd01377 465 DKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYNIDGW 510 (693)
T ss_pred HHHHHHHHHHHhcCCCcccccCCCCCCCcEEEEeeceeEeeccccH
Confidence 3445555554432222 2 122223334678899999999997777
No 34
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=54.87 E-value=12 Score=35.89 Aligned_cols=44 Identities=34% Similarity=0.641 Sum_probs=26.2
Q ss_pred hHHHHHHHHhhhcCCCC-CccccccceeeeeeccCcceeeeccce
Q psy8603 67 NETLLQKFNTVHRDNPF-YEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 67 f~~l~~al~~l~~~~gf-~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
.+.+.+.|...+.++.. .......--.+.|+||||+|+|.+.-+
T Consensus 452 d~~~~~kl~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gf 496 (679)
T cd00124 452 DETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDARGF 496 (679)
T ss_pred HHHHHHHHHHHhcCCcccccCCCCCCCceEEEeeceeEEecCCCH
Confidence 34455555544432232 222223334688999999999997777
No 35
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=53.27 E-value=15 Score=35.58 Aligned_cols=18 Identities=39% Similarity=0.970 Sum_probs=15.9
Q ss_pred eeeeeccCcceeeeccce
Q psy8603 93 AFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 93 ~il~~h~ag~V~y~aaIL 110 (184)
.+.|+||||+|+|.+.-+
T Consensus 523 ~F~I~HyAG~V~Y~v~gf 540 (717)
T cd01382 523 GFIIRHFAGAVCYETTQF 540 (717)
T ss_pred CEEEEecceeEeecCCCh
Confidence 588999999999997777
No 36
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=49.09 E-value=7.6 Score=37.22 Aligned_cols=19 Identities=42% Similarity=0.791 Sum_probs=16.6
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
..+.|+||||+|+|.+.-+
T Consensus 487 ~~F~I~HyAG~V~Y~~~gf 505 (653)
T cd01379 487 LSFGIHHYAGKVLYNASGF 505 (653)
T ss_pred CceEEEEeceeEeecCCCH
Confidence 4688999999999997777
No 37
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=48.15 E-value=19 Score=27.11 Aligned_cols=39 Identities=13% Similarity=0.179 Sum_probs=24.0
Q ss_pred HHHHHHhcCCCHHHHHHhHhhceEEecCeEEEEeCCccc
Q psy8603 144 VVLISELLRVKKETLLAALTAKHARASDETLVINYRLPE 182 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~~~~~~~ge~i~~~~~~~e 182 (184)
+..+|++||++.++|.+.+..+-=...++.+..+.++++
T Consensus 100 ~~~la~~Lg~~~~el~~~~~~~gW~~d~~~~~~~~~~~~ 138 (143)
T PF10075_consen 100 LSDLAEMLGLSEEELEKFIKSRGWTVDGDGVLFPPNPEE 138 (143)
T ss_dssp HHHHHHHTTS-HHHHHHHHHHHT-EE-----EE---HHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCEECCCccEEecCCcc
Confidence 789999999999999999998866666666666554443
No 38
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.54 E-value=22 Score=27.74 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCCCHHHHHH
Q psy8603 141 TEVVVLISELLRVKKETLLA 160 (184)
Q Consensus 141 ~~~l~~~a~LLgv~~~~L~~ 160 (184)
...+.++|+||||+++++..
T Consensus 123 d~vi~RvAeLLgV~~~d~V~ 142 (148)
T COG4103 123 DHVIWRVAELLGVSPEDRVR 142 (148)
T ss_pred HHHHHHHHHHhCCCHHHHHH
Confidence 45789999999999999854
No 39
>PF12728 HTH_17: Helix-turn-helix domain
Probab=47.47 E-value=20 Score=21.93 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.7
Q ss_pred HHHHHHhcCCCHHHHHHhHhhceE
Q psy8603 144 VVLISELLRVKKETLLAALTAKHA 167 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~~~~ 167 (184)
+..+|++|||+...+.+.+....+
T Consensus 4 ~~e~a~~l~is~~tv~~~~~~g~i 27 (51)
T PF12728_consen 4 VKEAAELLGISRSTVYRWIRQGKI 27 (51)
T ss_pred HHHHHHHHCcCHHHHHHHHHcCCC
Confidence 567999999999999998877655
No 40
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=43.29 E-value=8.8 Score=36.68 Aligned_cols=28 Identities=36% Similarity=0.729 Sum_probs=20.5
Q ss_pred ccceeeeeeccCcceeeeccceecCCCcccccee
Q psy8603 89 RRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVE 122 (184)
Q Consensus 89 ~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~ 122 (184)
..-..+.|+||||+|+|.+.-+ .-.|-+
T Consensus 482 ~~~~~F~I~HyaG~V~Y~v~gf------leKNrD 509 (689)
T PF00063_consen 482 TSKSSFTIKHYAGDVTYDVEGF------LEKNRD 509 (689)
T ss_dssp STTSCEEEEETTEEEEEE-TTH------HHHHHE
T ss_pred cCCCceEeecccCcceeccccc------cccccc
Confidence 3456678899999999998877 556544
No 41
>PHA01976 helix-turn-helix protein
Probab=39.94 E-value=34 Score=21.87 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.1
Q ss_pred ecCHHHHHHHHHhcCCCHHHHH
Q psy8603 138 VRNTEVVVLISELLRVKKETLL 159 (184)
Q Consensus 138 ~~~~~~l~~~a~LLgv~~~~L~ 159 (184)
.++.+.+..+|..|||+.+.|.
T Consensus 41 ~p~~~~l~~ia~~l~v~~~~l~ 62 (67)
T PHA01976 41 LPNLKTLLRLADALGVTLDWLC 62 (67)
T ss_pred CCCHHHHHHHHHHHCcCHHHHh
Confidence 4567889999999999999884
No 42
>PF08667 BetR: BetR domain; InterPro: IPR013975 CheY-like phosphoacceptor (or receiver [REC]) domain is a common module in a variety of response regulators of the bacterial signal transduction systems. BetR is one of the many response regulators and is encoded mainly in Burkholderia spp. It is a N-terminal helix-turn-helix domain (HTH) and has been shown to be related to the XRE-type HTH domain (IPR001387 from INTERPRO), it has been suggested that BetR would have dimerization, protein-protein interaction, and activation/relief-of-inhibition properties [].
Probab=39.38 E-value=12 Score=29.25 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=17.8
Q ss_pred CHHHHHHHHHhcCCCHHHHH
Q psy8603 140 NTEVVVLISELLRVKKETLL 159 (184)
Q Consensus 140 ~~~~l~~~a~LLgv~~~~L~ 159 (184)
+.+.+..+|+.+|++.++|.
T Consensus 50 tl~EI~~Ia~~fgvS~d~l~ 69 (147)
T PF08667_consen 50 TLEEIKKIAKHFGVSPDELF 69 (147)
T ss_pred CHHHHHHHHHHhCcCHHHHH
Confidence 45679999999999999998
No 43
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=37.78 E-value=39 Score=20.09 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.3
Q ss_pred HHHHHHHhcCCCHHHHHHhH
Q psy8603 143 VVVLISELLRVKKETLLAAL 162 (184)
Q Consensus 143 ~l~~~a~LLgv~~~~L~~aL 162 (184)
.+..+|++|||+...|..-|
T Consensus 20 n~~~aA~~Lgisr~tL~~kl 39 (42)
T PF02954_consen 20 NVSKAARLLGISRRTLYRKL 39 (42)
T ss_dssp -HHHHHHHHTS-HHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
Confidence 36899999999999887654
No 44
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=37.60 E-value=41 Score=32.45 Aligned_cols=18 Identities=50% Similarity=1.018 Sum_probs=15.8
Q ss_pred eeeeeccCcceeeeccce
Q psy8603 93 AFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 93 ~il~~h~ag~V~y~aaIL 110 (184)
.+.|+||||+|+|.+.-+
T Consensus 479 ~F~I~HyAG~V~Y~v~gf 496 (677)
T cd01383 479 AFTVRHYAGEVTYDTTGF 496 (677)
T ss_pred ceEEEEeccceeecCCCh
Confidence 578899999999997777
No 45
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=36.98 E-value=1.8e+02 Score=21.77 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=48.9
Q ss_pred HHHHHHHhhhcCCCCCccccccceeeeeec----------------cCcceeeeccceecCCCccccceeeecCCCCCCC
Q psy8603 69 TLLQKFNTVHRDNPFYEIPQRRENAFIVKH----------------YAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHH 132 (184)
Q Consensus 69 ~l~~al~~l~~~~gf~~~e~~~i~~il~~h----------------~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~ 132 (184)
..+++|+.+ |+.-+++ .+-++.|+- -.|.-+|+ -.|.-.+.....
T Consensus 9 k~rkmmkkm----Gik~e~i-~v~~V~Ir~~~~~~Vi~~P~V~~m~~~g~~tY~----------I~Ge~~~e~~~~---- 69 (115)
T PRK06369 9 KMKQMMKQM----GIDVEEL-DVEEVIIRLKDKEIVFENPQVTVMDAQGQKTYQ----------IVGEPEEVEKEA---- 69 (115)
T ss_pred HHHHHHHHc----CCcchhc-CeEEEEEEeCCEEEEEcCCeEEEEecCCCcEEE----------EEeccEEeeccc----
Confidence 567889999 9998888 777776542 12223333 234433332110
Q ss_pred CceeeecCHHHHHHHHHhcCCCHHHHHHhHhhc
Q psy8603 133 DESVTVRNTEVVVLISELLRVKKETLLAALTAK 165 (184)
Q Consensus 133 ~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~~ 165 (184)
....--+.+.++.+++-.||+.++-.+||...
T Consensus 70 -~~~~~i~~edI~lv~~q~gvs~~~A~~AL~~~ 101 (115)
T PRK06369 70 -EKEVEIPEEDIELVAEQTGVSEEEARKALEEA 101 (115)
T ss_pred -cccCCCCHHHHHHHHHHHCcCHHHHHHHHHHc
Confidence 00112467789999999999999999988653
No 46
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=36.56 E-value=24 Score=22.36 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=15.5
Q ss_pred cCHHHHHHHHHhcCCCHHHHHH
Q psy8603 139 RNTEVVVLISELLRVKKETLLA 160 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~ 160 (184)
.+.+.+..+|..|||++++|..
T Consensus 38 ~~~~~l~~ia~~l~~~~~el~~ 59 (63)
T PF13443_consen 38 PSLDTLEKIAKALNCSPEELFE 59 (63)
T ss_dssp --HHHHHHHHHHHT--HHHCTE
T ss_pred ccHHHHHHHHHHcCCCHHHHhh
Confidence 4567899999999999998753
No 47
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=36.55 E-value=38 Score=19.74 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCHHHHHHhHhhce
Q psy8603 144 VVLISELLRVKKETLLAALTAKH 166 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~~~ 166 (184)
+..+|++|||+...+...+-...
T Consensus 4 ~~e~a~~lgis~~ti~~~~~~g~ 26 (49)
T TIGR01764 4 VEEAAEYLGVSKDTVYRLIHEGE 26 (49)
T ss_pred HHHHHHHHCCCHHHHHHHHHcCC
Confidence 56799999999999998876554
No 48
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=36.42 E-value=32 Score=21.03 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.9
Q ss_pred ecCHHHHHHHHHhcCCCHHHH
Q psy8603 138 VRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 138 ~~~~~~l~~~a~LLgv~~~~L 158 (184)
..+.+.+..+|..||++.+.|
T Consensus 35 ~~~~~~~~~ia~~l~~~~~~l 55 (55)
T PF01381_consen 35 NPSLDTLKKIAKALGVSPEYL 55 (55)
T ss_dssp TSBHHHHHHHHHHHTSEHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHC
Confidence 356788999999999999875
No 49
>KOG0164|consensus
Probab=35.62 E-value=18 Score=35.38 Aligned_cols=44 Identities=32% Similarity=0.588 Sum_probs=25.2
Q ss_pred hHHHHHHHHhhhcCCCCCcccc-------ccceeeeeeccCcceeeeccce
Q psy8603 67 NETLLQKFNTVHRDNPFYEIPQ-------RRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 67 f~~l~~al~~l~~~~gf~~~e~-------~~i~~il~~h~ag~V~y~aaIL 110 (184)
...++++|+..+.+++-....+ ...-.+-|+||||+|+|+.--+
T Consensus 466 D~tfL~~l~~~~~~H~Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gF 516 (1001)
T KOG0164|consen 466 DETFLEKLNQKLKKHPHYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGF 516 (1001)
T ss_pred hHHHHHHHHHHhhhCCcchhhhccccccccCccceeEEEeccceEEEEEee
Confidence 4455666666655445443222 1123344669999999994333
No 50
>KOG0160|consensus
Probab=35.33 E-value=37 Score=33.77 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=17.8
Q ss_pred cccccceeeeeeccCcceeeeccce
Q psy8603 86 IPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 86 ~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
.+...--.+.+.||||.|.|++..+
T Consensus 476 kpr~~~~~f~v~hyAg~v~y~~~~f 500 (862)
T KOG0160|consen 476 KPRLSRTDFRVAHYAGDVTYDTEGF 500 (862)
T ss_pred CCCCCcCCcccccccCccccchhhh
Confidence 3443434567899999999996655
No 51
>PF01476 LysM: LysM domain; InterPro: IPR018392 This domain is about 40 residues long and is found in a variety of enzymes involved in bacterial cell wall degradation []. This domain may have a general peptidoglycan binding function.; GO: 0016998 cell wall macromolecule catabolic process; PDB: 2DJP_A 3ZQD_A 1Y7M_B 4A52_A 2L9Y_A 1E0G_A.
Probab=34.29 E-value=56 Score=18.92 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=24.3
Q ss_pred ecCHHHHHHHHHhcCCCHHHHHHhH---hhceEEecCeEEEEe
Q psy8603 138 VRNTEVVVLISELLRVKKETLLAAL---TAKHARASDETLVIN 177 (184)
Q Consensus 138 ~~~~~~l~~~a~LLgv~~~~L~~aL---t~~~~~~~ge~i~~~ 177 (184)
|...+.+..+|.-.|++.++|.++= .... ...|+.+..|
T Consensus 3 V~~gDtl~~IA~~~~~~~~~l~~~N~~~~~~~-l~~G~~l~iP 44 (44)
T PF01476_consen 3 VQPGDTLWSIAKRYGISVDELMELNPNIDSDN-LQPGQKLCIP 44 (44)
T ss_dssp E-TT--HHHHHHHTTS-HHHHHHHCCTTHGGC-GGTTEEEEEC
T ss_pred ECcCCcHHHHHhhhhhhHhHHHHhcCCCCccc-CCCCCEEEeC
Confidence 4455779999999999999998753 2222 4456666554
No 52
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=33.02 E-value=51 Score=18.97 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=19.4
Q ss_pred HHHHHHhcCCCHHHHHHhHhhceE
Q psy8603 144 VVLISELLRVKKETLLAALTAKHA 167 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~~~~ 167 (184)
+..+|++|||+...+....-...+
T Consensus 3 ~~e~a~~lgvs~~tl~~~~~~g~~ 26 (49)
T cd04762 3 TKEAAELLGVSPSTLRRWVKEGKL 26 (49)
T ss_pred HHHHHHHHCcCHHHHHHHHHcCCC
Confidence 467899999999999988765543
No 53
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=32.98 E-value=58 Score=21.04 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=25.5
Q ss_pred ceeeecCHHHHHHHHHhcCCCHHHHHHhHh
Q psy8603 134 ESVTVRNTEVVVLISELLRVKKETLLAALT 163 (184)
Q Consensus 134 ~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt 163 (184)
+.+.+.++..+..-|+-|||+.++|..|.-
T Consensus 13 ~~I~~~e~~ev~ywa~~~gvt~~~L~~AV~ 42 (57)
T PF12244_consen 13 DRIDLSEPYEVRYWAKRFGVTEEQLREAVR 42 (57)
T ss_pred HhcCCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 445667888999999999999999998864
No 54
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=30.67 E-value=61 Score=31.84 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.0
Q ss_pred eeeeeeccCcc--eeeeccce
Q psy8603 92 NAFIVKHYAGK--VKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~--V~y~aaIL 110 (184)
..+.|+||||. |+|.+.-+
T Consensus 515 ~~F~I~HyAG~~~V~Y~~~gf 535 (767)
T cd01386 515 LQFVLFHLLGTNPVLYDVTGW 535 (767)
T ss_pred CcEEEEEcCCCCceEecCCCH
Confidence 45889999995 99998777
No 55
>KOG4229|consensus
Probab=28.02 E-value=49 Score=33.71 Aligned_cols=44 Identities=43% Similarity=0.762 Sum_probs=27.4
Q ss_pred hHHHHHHHHhhhcCCCCCcccccc-ceeeeeeccCcceeeeccce
Q psy8603 67 NETLLQKFNTVHRDNPFYEIPQRR-ENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 67 f~~l~~al~~l~~~~gf~~~e~~~-i~~il~~h~ag~V~y~aaIL 110 (184)
-..+..++...+..+.+....... --.++|+||||+|+|+....
T Consensus 517 d~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~f 561 (1062)
T KOG4229|consen 517 DQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGF 561 (1062)
T ss_pred HHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhH
Confidence 455556666554333333333333 34788999999999996665
No 56
>TIGR02899 spore_safA spore coat assembly protein SafA. in which one of which is found in most examples of endospore-forming bacteria. Lysin motifs are repeated in many proteins.
Probab=27.65 E-value=60 Score=18.33 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCCHHHHHHh---HhhceEEecCeEEEEe
Q psy8603 142 EVVVLISELLRVKKETLLAA---LTAKHARASDETLVIN 177 (184)
Q Consensus 142 ~~l~~~a~LLgv~~~~L~~a---Lt~~~~~~~ge~i~~~ 177 (184)
+.+..+|+-+|++.++|.++ +........|+.+..|
T Consensus 5 dtl~~IA~~~~~~~~~l~~~N~~~~~~~~~~~g~~l~ip 43 (44)
T TIGR02899 5 DTLWKIAKKYGVDFDELIQANPQLSNPNLIYPGMKIKIP 43 (44)
T ss_pred CCHHHHHHHHCcCHHHHHHHhhcCCCCCCcCCCCEEecC
Confidence 45888999999999988664 1122234456666554
No 57
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.07 E-value=68 Score=18.88 Aligned_cols=24 Identities=17% Similarity=-0.014 Sum_probs=18.7
Q ss_pred HHHHHHhcCCCHHHHHHhHhhceE
Q psy8603 144 VVLISELLRVKKETLLAALTAKHA 167 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~~~~ 167 (184)
+..+|+++||+...|....-.-.+
T Consensus 3 ~~e~a~~~gv~~~tlr~~~~~g~l 26 (49)
T cd04761 3 IGELAKLTGVSPSTLRYYERIGLL 26 (49)
T ss_pred HHHHHHHHCcCHHHHHHHHHCCCC
Confidence 467899999999999877554443
No 58
>PHA02591 hypothetical protein; Provisional
Probab=27.00 E-value=70 Score=22.44 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=17.2
Q ss_pred HHHHHHHhcCCCHHHHHHhHh
Q psy8603 143 VVVLISELLRVKKETLLAALT 163 (184)
Q Consensus 143 ~l~~~a~LLgv~~~~L~~aLt 163 (184)
..+.||++|||+.+...+.|-
T Consensus 61 SqeqIA~~LGVsqetVrKYL~ 81 (83)
T PHA02591 61 TVEKIASLLGVSVRKVRRYLE 81 (83)
T ss_pred CHHHHHHHhCCCHHHHHHHHh
Confidence 468999999999988877663
No 59
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=25.87 E-value=55 Score=18.48 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.0
Q ss_pred CHHHHHHHHHhcCCCHHHH
Q psy8603 140 NTEVVVLISELLRVKKETL 158 (184)
Q Consensus 140 ~~~~l~~~a~LLgv~~~~L 158 (184)
+.+.+..+++.||++++.|
T Consensus 38 ~~~~~~~i~~~~~~~~~~~ 56 (56)
T smart00530 38 SLETLKKLAKALGVSLDEL 56 (56)
T ss_pred CHHHHHHHHHHhCCChhhC
Confidence 6678999999999998753
No 60
>PF00376 MerR: MerR family regulatory protein; InterPro: IPR000551 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these is the MerR subfamily. MerR, which is found in many bacterial species mediates the mercuric-dependent induction of the mercury resistance operon. In the absence of mercury merR represses transcription by binding tightly, as a dimer, to the 'mer' operator region; when mercury is present the dimeric complex binds a single ion and becomes a potent transcriptional activator, while remaining bound to the mer site. Members of the family include the mercuric resistance operon regulatory protein merR; Bacillus subtilis bltR and bmrR; Bacillus glnR; Streptomyces coelicolor hspR; Bradyrhizobium japonicum nolA; Escherichia coli superoxide response regulator soxR; and Streptomyces lividans transcriptional activator tipA [, , , , , ]. Other members include hypothetical proteins from E. coli, B. subtilis and Haemophilus influenzae. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3HH0_A 2DG6_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q07_A 1Q06_A 1Q05_B ....
Probab=25.49 E-value=80 Score=18.53 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHHHHHhcCCCHHHHHHh
Q psy8603 144 VVLISELLRVKKETLLAA 161 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~a 161 (184)
...+|+++||+...|...
T Consensus 2 i~e~A~~~gvs~~tlR~y 19 (38)
T PF00376_consen 2 IGEVAKLLGVSPRTLRYY 19 (38)
T ss_dssp HHHHHHHHTS-HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHH
Confidence 356899999999998754
No 61
>smart00497 IENR1 Intron encoded nuclease repeat motif. Repeat of unknown function, but possibly DNA-binding via helix-turn-helix motif (Ponting, unpublished).
Probab=25.03 E-value=68 Score=19.39 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=24.3
Q ss_pred HHHHHHHHhcCCCHHHHHHhHhhceEEecC
Q psy8603 142 EVVVLISELLRVKKETLLAALTAKHARASD 171 (184)
Q Consensus 142 ~~l~~~a~LLgv~~~~L~~aLt~~~~~~~g 171 (184)
+.+..+|+.||++...+..++-......+|
T Consensus 18 ~S~~eAa~~lg~~~~~I~~~~~~~~~~~gg 47 (53)
T smart00497 18 SSIREAAKYLGISHSSISKYLNTGKKFKGG 47 (53)
T ss_pred cCHHHHHHHhCCCHHHHHHHHhCCCccCCe
Confidence 357889999999999999999886665443
No 62
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=24.76 E-value=64 Score=21.89 Aligned_cols=25 Identities=16% Similarity=0.144 Sum_probs=22.4
Q ss_pred HHHHHHhcCCCHHHHHHhHhhceEE
Q psy8603 144 VVLISELLRVKKETLLAALTAKHAR 168 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~~~~~ 168 (184)
+..+|+++|++.-++...|..+-+.
T Consensus 37 ~gkAAelag~s~~eF~~~L~~~gI~ 61 (76)
T PF03683_consen 37 LGKAAELAGMSRWEFLELLKERGIP 61 (76)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCCCC
Confidence 7899999999999999999888664
No 63
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=23.43 E-value=1.1e+02 Score=18.83 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCHHHHHHhHhhc
Q psy8603 144 VVLISELLRVKKETLLAALTAK 165 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~~ 165 (184)
+..+|+++||+......+|-.+
T Consensus 2 i~dIA~~agvS~~TVSr~ln~~ 23 (46)
T PF00356_consen 2 IKDIAREAGVSKSTVSRVLNGP 23 (46)
T ss_dssp HHHHHHHHTSSHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHhCC
Confidence 5789999999999999999866
No 64
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=22.88 E-value=1e+02 Score=17.67 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.1
Q ss_pred HHHHHhcCCCHHHHHHhHh
Q psy8603 145 VLISELLRVKKETLLAALT 163 (184)
Q Consensus 145 ~~~a~LLgv~~~~L~~aLt 163 (184)
+.+|..||+..+.....|.
T Consensus 6 ~diA~~lG~t~ETVSR~l~ 24 (32)
T PF00325_consen 6 QDIADYLGLTRETVSRILK 24 (32)
T ss_dssp HHHHHHHTS-HHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHH
Confidence 5689999999998888775
No 65
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=21.62 E-value=78 Score=22.78 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=17.6
Q ss_pred HHHHHhcCCCHHHHHHhHhh
Q psy8603 145 VLISELLRVKKETLLAALTA 164 (184)
Q Consensus 145 ~~~a~LLgv~~~~L~~aLt~ 164 (184)
.++|.+||++...|.+-|..
T Consensus 75 trAa~mLGinR~TLRKKLkq 94 (98)
T COG2901 75 TRAALMLGINRGTLRKKLKK 94 (98)
T ss_pred HHHHHHHcccHHHHHHHHHH
Confidence 58999999999999998764
No 66
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=21.42 E-value=81 Score=24.45 Aligned_cols=24 Identities=13% Similarity=0.136 Sum_probs=19.2
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHhH
Q psy8603 139 RNTEVVVLISELLRVKKETLLAAL 162 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~aL 162 (184)
.....+.++|.+||++..++...+
T Consensus 108 ~E~~lL~~iA~~LGis~~~~~~l~ 131 (150)
T cd07311 108 GEVAAVRKAASLLGISEDEVQKLE 131 (150)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345679999999999998887643
No 67
>PF13309 HTH_22: HTH domain
Probab=21.25 E-value=1e+02 Score=20.15 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=16.8
Q ss_pred HHHHHHHhcCCCHHHHHHhH
Q psy8603 143 VVVLISELLRVKKETLLAAL 162 (184)
Q Consensus 143 ~l~~~a~LLgv~~~~L~~aL 162 (184)
.+..+|+.|||+...+-..|
T Consensus 44 av~~vA~~L~iS~~TVY~YL 63 (64)
T PF13309_consen 44 AVEYVAEKLGISRATVYRYL 63 (64)
T ss_pred HHHHHHHHHCCCHHHHHHHc
Confidence 58999999999998876654
No 68
>PF13411 MerR_1: MerR HTH family regulatory protein; PDB: 2JML_A 3GP4_A 3GPV_B.
Probab=21.15 E-value=1.1e+02 Score=19.51 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCHHHHHHhHh
Q psy8603 144 VVLISELLRVKKETLLAALT 163 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt 163 (184)
+..+|+++||+.+.|....-
T Consensus 3 i~eva~~~gvs~~tlr~y~~ 22 (69)
T PF13411_consen 3 IKEVAKLLGVSPSTLRYYER 22 (69)
T ss_dssp HHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 46789999999999987654
No 69
>PF12844 HTH_19: Helix-turn-helix domain; PDB: 3LIS_B 3LFP_A 2XIU_B 2GZU_B 2XJ3_A 1UTX_A 2XI8_B 3F6W_C 3EUS_B.
Probab=21.14 E-value=95 Score=19.50 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.6
Q ss_pred cCHHHHHHHHHhcCCCHHHHH
Q psy8603 139 RNTEVVVLISELLRVKKETLL 159 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~ 159 (184)
.+...+..+|..|||+.+.|.
T Consensus 39 ~~~~~l~~i~~~~~v~~~~l~ 59 (64)
T PF12844_consen 39 PSVSTLKKIAEALGVSLDELF 59 (64)
T ss_dssp -BHHHHHHHHHHHTS-HHHHC
T ss_pred CCHHHHHHHHHHhCCCHHHHh
Confidence 446789999999999999875
No 70
>PF13560 HTH_31: Helix-turn-helix domain; PDB: 3F51_C 3F52_A 3PXP_A 2OFY_A.
Probab=20.26 E-value=1.1e+02 Score=19.50 Aligned_cols=22 Identities=9% Similarity=0.099 Sum_probs=16.1
Q ss_pred ecCHHHHHHHHHhcCCCHHHHH
Q psy8603 138 VRNTEVVVLISELLRVKKETLL 159 (184)
Q Consensus 138 ~~~~~~l~~~a~LLgv~~~~L~ 159 (184)
..+.+.+..+|..||++.+++.
T Consensus 41 ~p~~~~l~~l~~~l~~~~~~~~ 62 (64)
T PF13560_consen 41 RPSPDTLQRLARALGVPPDERA 62 (64)
T ss_dssp S-BHHHHHHHHHHTT--HHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHc
Confidence 3567899999999999988764
No 71
>KOG0161|consensus
Probab=20.03 E-value=75 Score=34.52 Aligned_cols=22 Identities=36% Similarity=0.724 Sum_probs=17.5
Q ss_pred ccceeeeeeccCcceeeeccce
Q psy8603 89 RRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 89 ~~i~~il~~h~ag~V~y~aaIL 110 (184)
.....+++.||||+|-|.+.-+
T Consensus 563 ~~~~~F~l~HyaG~V~Y~~~~W 584 (1930)
T KOG0161|consen 563 KAEAHFALVHYAGTVDYNVDGW 584 (1930)
T ss_pred cchhhhheeeecceeccCccch
Confidence 4455677889999999997766
Done!