Query psy8603
Match_columns 184
No_of_seqs 172 out of 1108
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 23:02:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1lkx_A Myosin IE heavy chain; 100.0 1.9E-42 6.5E-47 323.0 6.3 162 1-183 177-345 (697)
2 1kk8_A Myosin heavy chain, str 100.0 3.3E-42 1.1E-46 326.6 7.0 158 1-183 260-419 (837)
3 1w7j_A Myosin VA; motor protei 100.0 6.3E-42 2.2E-46 323.2 7.3 157 1-183 237-396 (795)
4 4db1_A Myosin-7; S1DC, cardiac 100.0 1E-41 3.6E-46 321.0 7.7 158 1-183 261-420 (783)
5 1w9i_A Myosin II heavy chain; 100.0 1.9E-41 6.4E-46 318.6 8.6 157 1-183 256-414 (770)
6 2ycu_A Non muscle myosin 2C, a 100.0 4.8E-41 1.6E-45 323.8 9.5 157 1-183 234-391 (995)
7 1g8x_A Myosin II heavy chain f 100.0 1E-40 3.5E-45 321.6 8.2 157 1-183 256-414 (1010)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 9.4E-41 3.2E-45 323.9 7.8 157 1-183 237-396 (1080)
9 2v26_A Myosin VI; calmodulin-b 100.0 1E-40 3.6E-45 314.7 7.0 159 1-183 219-412 (784)
10 1i84_S Smooth muscle myosin he 100.0 9.9E-41 3.4E-45 326.5 6.4 158 1-183 264-422 (1184)
11 4anj_A Unconventional myosin-V 100.0 1.1E-39 3.8E-44 314.6 6.0 161 1-183 223-416 (1052)
12 1w7j_A Myosin VA; motor protei 69.2 3.5 0.00012 39.0 3.7 43 68-110 521-564 (795)
13 2dfs_A Myosin-5A; myosin-V, in 67.2 3.9 0.00013 40.0 3.7 43 68-110 521-564 (1080)
14 1i84_S Smooth muscle myosin he 67.0 4.3 0.00015 39.8 4.1 44 67-110 551-596 (1184)
15 1g8x_A Myosin II heavy chain f 65.1 4.6 0.00016 39.2 3.7 19 92-110 566-584 (1010)
16 1w9i_A Myosin II heavy chain; 61.7 5.4 0.00018 37.6 3.5 19 92-110 566-584 (770)
17 2v26_A Myosin VI; calmodulin-b 57.5 8 0.00027 36.5 3.8 19 92-110 571-589 (784)
18 1kk8_A Myosin heavy chain, str 54.4 8.2 0.00028 36.7 3.4 20 91-110 575-594 (837)
19 4db1_A Myosin-7; S1DC, cardiac 54.4 8.1 0.00028 36.5 3.3 19 92-110 575-593 (783)
20 2ycu_A Non muscle myosin 2C, a 51.6 9.1 0.00031 37.1 3.2 19 92-110 547-565 (995)
21 1lkx_A Myosin IE heavy chain; 51.5 4.2 0.00014 37.9 0.9 19 92-110 501-519 (697)
22 4anj_A Unconventional myosin-V 48.0 12 0.00043 36.4 3.6 19 92-110 575-593 (1052)
23 3f6w_A XRE-family like protein 37.7 34 0.0012 21.5 3.5 26 139-164 54-79 (83)
24 2r1j_L Repressor protein C2; p 35.1 34 0.0012 20.3 3.1 22 139-160 45-66 (68)
25 3qq6_A HTH-type transcriptiona 32.2 36 0.0012 21.5 2.9 23 138-160 50-72 (78)
26 1adr_A P22 C2 repressor; trans 31.6 46 0.0016 20.2 3.3 22 139-160 45-66 (76)
27 2xi8_A Putative transcription 31.2 42 0.0014 19.7 3.0 21 139-159 41-61 (66)
28 1ufm_A COP9 complex subunit 4; 29.3 41 0.0014 22.4 2.9 20 144-163 33-52 (84)
29 2b5a_A C.BCLI; helix-turn-heli 29.0 48 0.0016 20.2 3.0 23 139-161 50-72 (77)
30 3b7h_A Prophage LP1 protein 11 28.8 43 0.0015 20.5 2.8 23 138-160 47-69 (78)
31 3s8q_A R-M controller protein; 27.1 53 0.0018 20.5 3.0 23 139-161 51-73 (82)
32 3kz3_A Repressor protein CI; f 26.9 20 0.0007 22.6 0.9 25 139-163 52-76 (80)
33 2da7_A Zinc finger homeobox pr 26.7 55 0.0019 21.5 3.0 28 139-166 30-57 (71)
34 2ofy_A Putative XRE-family tra 25.2 55 0.0019 20.6 2.9 22 139-160 55-76 (86)
35 1neq_A DNA-binding protein NER 24.0 64 0.0022 20.6 3.0 19 141-159 48-66 (74)
36 3g5g_A Regulatory protein; tra 23.8 62 0.0021 21.6 3.0 23 139-161 68-90 (99)
37 1e0g_A Membrane-bound lytic mu 23.5 44 0.0015 18.7 1.9 42 137-178 6-47 (48)
38 3omt_A Uncharacterized protein 23.4 29 0.001 21.3 1.2 21 139-159 48-68 (73)
39 1j9i_A GPNU1 DBD;, terminase s 22.3 63 0.0022 19.9 2.6 21 144-164 5-25 (68)
40 2wus_R RODZ, putative uncharac 22.0 73 0.0025 22.0 3.2 23 142-164 56-78 (112)
41 3e7l_A Transcriptional regulat 21.9 66 0.0023 19.6 2.6 22 144-165 35-56 (63)
42 3op9_A PLI0006 protein; struct 21.8 69 0.0024 21.5 3.0 22 139-160 49-70 (114)
43 1g2h_A Transcriptional regulat 20.9 61 0.0021 19.8 2.3 20 144-163 36-55 (61)
44 3t76_A VANU, transcriptional r 20.8 31 0.0011 22.9 0.9 58 67-159 26-83 (88)
45 2k9q_A Uncharacterized protein 20.3 70 0.0024 19.7 2.6 23 139-161 42-64 (77)
No 1
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=100.00 E-value=1.9e-42 Score=323.01 Aligned_cols=162 Identities=20% Similarity=0.366 Sum_probs=143.8
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCC-Cccccccccccc-ccCCCCCccc-hHHHHHHHHhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLK-KIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTV 77 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~-~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l 77 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|. ++++|+||++++ ..++++||++ |+.+++||+++
T Consensus 177 a~I~~yLLEKSRVv~q~~gERnfHIFYqllaG~~~~~~~~l~L~~~~~~y~yL~~~~~~~~~~~dD~~~f~~~~~Am~~l 256 (697)
T 1lkx_A 177 GKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKKSGCFDVSTIDDSGEFKIIVKAMETL 256 (697)
T ss_dssp EEEEEECCCGGGGTCCCTTCCCBHHHHHHHTTSCHHHHHHHTCCSCGGGSHHHHHTTCCCCTTCCHHHHHHHHHHHHHHT
T ss_pred eeeeeeeccCceeeeecCCCCceeehhHHhcCCCHHHHHHhcCCCChhhCccccCCCCcccCCCchHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999998 899999999887 6788999998 99999999999
Q ss_pred hcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHH
Q psy8603 78 HRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKET 157 (184)
Q Consensus 78 ~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~ 157 (184)
||+++++..||++| |||| |||||+|.+........+.+.+.|.+.++.+|.||||++++
T Consensus 257 ----G~~~~e~~~i~~il-----------aaIL------hLGNi~F~~~~~~~~~~~~~~v~~~~~l~~~a~LLgv~~~~ 315 (697)
T 1lkx_A 257 ----GLKESDQNSIWRIL-----------AAIL------HIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQS 315 (697)
T ss_dssp ----TCCHHHHHHHHHHH-----------HHHH------HHTTCCEEEETTC----CEEEESSHHHHHHHHHHHTSCHHH
T ss_pred ----CCCHHHHHHHHHHH-----------HHHH------hcccceEeecccccCCCCcceeCCHHHHHHHHHhhCCCHHH
Confidence 99999999999999 9999 99999998732111123678999999999999999999999
Q ss_pred HHHhHhhceEEec----CeEEEEeCCcccc
Q psy8603 158 LLAALTAKHARAS----DETLVINYRLPEV 183 (184)
Q Consensus 158 L~~aLt~~~~~~~----ge~i~~~~~~~ea 183 (184)
|.++||++++.++ ||.+++|++++||
T Consensus 316 L~~~L~~r~~~~~~g~~~e~i~~~l~~~qA 345 (697)
T 1lkx_A 316 LSIALCYRSISTGVGKRCSVISVPMDCNQA 345 (697)
T ss_dssp HHHHHHBCC----------CCCCBCCHHHH
T ss_pred HHHHHhccEEeeccCCCCCeEEecCCHHHH
Confidence 9999999999999 9999999999997
No 2
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=100.00 E-value=3.3e-42 Score=326.59 Aligned_cols=158 Identities=21% Similarity=0.288 Sum_probs=144.8
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCC-CCcccccccccccccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHL-KKIESYHYLNRIELELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L-~~~~~y~yl~~~~~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+| .+|.+|+||+++...++++||++ |+.+++||+++
T Consensus 260 a~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yL~~g~~~~~~~dD~~~f~~~~~Am~~l- 338 (837)
T 1kk8_A 260 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTVDNIDDVEEFKLCDEAFDIL- 338 (837)
T ss_dssp EEEEEECCCGGGGTCCCTTCCSBHHHHHHTSCSSGGGHHHHTCCSCGGGCTTTCSSCSCBTTBCHHHHHHHHHHHHHHT-
T ss_pred eEEEEEeccCceeeeecCCCCceeehHHHHcCCCHHHHHHhCCCCChhhcccccCCCcccCCcChHHHHHHHHHHHHhc-
Confidence 6899999999999999999999999999999999999999999 68999999999988889999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|..... ++.+.+.+.+.++.+|+||||++++|
T Consensus 339 ---Gfs~~e~~~i~~il-----------AaIL------hLGNi~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L 394 (837)
T 1kk8_A 339 ---GFTKEEKQSMFKCT-----------ASIL------HMGEMKFKQRPR----EEQAESDGTAEAEKVAFLCGINAGDL 394 (837)
T ss_dssp ---TCCHHHHHHHHHHH-----------HHHH------HHTTCCEEC--------CCCEESCSHHHHHHHHHHTSCHHHH
T ss_pred ---CcCHHHHHHHHHHH-----------HHHH------hhccceEEecCC----CCccccCCHHHHHHHHHHHCCCHHHH
Confidence 99999999999999 9999 999999987643 46678899999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.++||.+++|+|++||
T Consensus 395 ~~aL~~~~~~~~~e~v~~~~~~~qA 419 (837)
T 1kk8_A 395 LKALLKPKVKVGTEMVTKGQNMNQV 419 (837)
T ss_dssp HHHHHSCEEC----CEECCCCHHHH
T ss_pred HHHhcCcEEEcCCceEEeCCCHHHH
Confidence 9999999999999999999999987
No 3
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=100.00 E-value=6.3e-42 Score=323.22 Aligned_cols=157 Identities=25% Similarity=0.324 Sum_probs=148.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|.++++|+||++++ ..++++||++ |+.+++||+++
T Consensus 237 a~I~~YLLEKSRVv~q~~gERNfHIFYqLlag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~Am~~l- 315 (795)
T 1w7j_A 237 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLL- 315 (795)
T ss_dssp EEEEEECCCGGGGTCCCTTCCSBHHHHHHHHTTTSGGGGGGCCCCTTTSHHHHTTSCCCCTTCCHHHHHHHHHHHHHHT-
T ss_pred eeceEEecccceEeccCCCCCchHhHHHHHcCCCHHHHHHccCCChHhCccccCCCCCcCCCccHHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999988 5789999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeee-cCHHHHHHHHHhcCCCHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTV-RNTEVVVLISELLRVKKET 157 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~-~~~~~l~~~a~LLgv~~~~ 157 (184)
||+++++..||++| |||| |||||+|...+ .+.+.+ .+.+.++.+|+||||++++
T Consensus 316 ---G~s~~e~~~i~~il-----------aaIL------hLGNi~F~~~~-----~~~~~v~~~~~~l~~~a~LLgv~~~~ 370 (795)
T 1w7j_A 316 ---GISDSYQMGIFRIL-----------AGIL------HLGNVEFASRD-----SDSCAIPPKHDPLTIFCDLMGVDYEE 370 (795)
T ss_dssp ---TCCHHHHHHHHHHH-----------HHHH------HHHTCCCEEEE-----TTEEECCTTCHHHHHHHHHHTCCHHH
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hccCceEeecC-----CcceeecCChHHHHHHHHHhCCCHHH
Confidence 99999999999999 9999 99999998754 245555 7889999999999999999
Q ss_pred HHHhHhhceEEecCeEEEEeCCcccc
Q psy8603 158 LLAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 158 L~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
|.++||++++.++||.+++|++++||
T Consensus 371 L~~aL~~~~~~~~~e~v~~~~~~~qA 396 (795)
T 1w7j_A 371 MAHWLCHRKLATATETYIKPISKLHA 396 (795)
T ss_dssp HHHHHSEEEEECSSCEEEEECCHHHH
T ss_pred HHHHhcccEEEeCCceecCCCCHHHH
Confidence 99999999999999999999999987
No 4
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=100.00 E-value=1e-41 Score=321.00 Aligned_cols=158 Identities=22% Similarity=0.296 Sum_probs=144.7
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCC-CcccccccccccccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLK-KIESYHYLNRIELELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~-~~~~y~yl~~~~~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|. +|.+|+||+++...++++||++ |+.+++||+++
T Consensus 261 a~I~~YLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~~y~yl~~g~~~~~~~dD~~~f~~~~~Am~~l- 339 (783)
T 4db1_A 261 ADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGETTVASIDDAEELMATDNAFDVL- 339 (783)
T ss_dssp EEEEEECCCGGGGTCCCTTCCSBHHHHHHHTCSSHHHHHHTTCCSCGGGCGGGCSSCCCCTTCCHHHHHHHHHHHHHHT-
T ss_pred eEEEEeecccceeeccCCCCCcchhHHHHHcCCCHHHHHHhccCCCHHHCccccCCCcccCCCCcHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999995 7999999999888899999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|..... ++.+.+.+.+.++.+|+||||++++|
T Consensus 340 ---Gfs~~e~~~i~~il-----------aaIL------hLGNi~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L 395 (783)
T 4db1_A 340 ---GFTSEEKNSMYKLT-----------GAIM------HFGNMKFKLKQR----EEQAEPDGTEEADKSAYLMGLNSADL 395 (783)
T ss_dssp ---TCCHHHHHHHHHHH-----------HHHH------HHTTCCEEECTT----SSCEEESCCHHHHHHHHHTTCCHHHH
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhccceeeccCC----CcccccCChHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 999999988653 46778899999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++++++|.+++|++++||
T Consensus 396 ~~aL~~~~i~~~~e~v~~~~~~~qA 420 (783)
T 4db1_A 396 LKGLCHPRVKVGNEYVTKGQNVQQV 420 (783)
T ss_dssp HHHHHSCC------CCCCCCCHHHH
T ss_pred HHhhcceEEEeCCeeEeeCCCHHHH
Confidence 9999999999999999999999987
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=100.00 E-value=1.9e-41 Score=318.64 Aligned_cols=157 Identities=27% Similarity=0.390 Sum_probs=149.4
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccc-cccccccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHY-LNRIELELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~y-l~~~~~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|.++.+|+| |+++...++++||++ |+.+++||+++
T Consensus 256 a~I~~yLLEKSRVv~q~~gERnfHIFYqLlaG~~~~~~~~l~L~~~~~y~yll~~g~~~~~~~dD~~~f~~~~~Am~~l- 334 (770)
T 1w9i_A 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIV- 334 (770)
T ss_dssp EEEEEECCCGGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCTTTSSSSCCCCTTCCHHHHHHHHHHHHHHH-
T ss_pred eEEEEEeccCceeecccCCCCcchhHHHHhcCCCHHHHHHhCCCChhhccccccCCccccCCCchHHHHHHHHHHHHHc-
Confidence 689999999999999999999999999999999999999999999999999 888888889999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|.. . +++.+.+.+.+.++.+|.||||++++|
T Consensus 335 ---Gf~~~e~~~i~~il-----------aaIL------hLGNi~F~~-~----~~~~~~~~~~~~l~~~a~LLgv~~~~L 389 (770)
T 1w9i_A 335 ---GFSQEEQMSIFKII-----------AGIL------HLGNIKFEK-G----AGEGAVLKDKTALNAASTVFGVNPSVL 389 (770)
T ss_dssp ---TCCHHHHHHHHHHH-----------HHHH------HHHTCCCEE-C----SSSSEECSCCHHHHHHHHHHTCCHHHH
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hhcCceEec-C----CCCccccCChHHHHHHHHHhCCCHHHH
Confidence 99999999999999 9999 999999983 2 246678899999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.++||.+++|++++||
T Consensus 390 ~~aL~~~~~~~~~e~v~~~~~~~qA 414 (770)
T 1w9i_A 390 EKALMEPRILAGRDLVAQHLNVEKS 414 (770)
T ss_dssp HHHHHSCEEEETTEEEECCCCHHHH
T ss_pred HHHhhCcEEEeCCeeEEeCCCHHHH
Confidence 9999999999999999999999987
No 6
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=100.00 E-value=4.8e-41 Score=323.81 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=149.9
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccccccccccCCCCCccc-hHHHHHHHHhhhc
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELPSFPGAS-NETLLQKFNTVHR 79 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~dd~~-f~~l~~al~~l~~ 79 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|.+|.+|+||+++...+++ ||++ |..++.||+++
T Consensus 234 a~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~-dD~~~f~~~~~A~~~l-- 310 (995)
T 2ycu_A 234 ANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLTNGPSSSPG-QERELFQETLESLRVL-- 310 (995)
T ss_dssp EEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHTTCCCGGGCTTSTTCSCSSTT-THHHHHHHHHHHHHHT--
T ss_pred eEEEEEeccCCeeeccCCCCCcchhHHHHHcCCCHHHHHHcCCCChHHcccccCCccccCC-cHHHHHHHHHHHHHHc--
Confidence 6899999999999999999999999999999999999999999999999999999888888 8888 99999999999
Q ss_pred CCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHHH
Q psy8603 80 DNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLL 159 (184)
Q Consensus 80 ~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~ 159 (184)
||+++++..||++| |||| |||||+|..... ++.+.+.+.+.++.+|.||||++++|.
T Consensus 311 --g~~~~e~~~i~~il-----------aaIL------hlGni~F~~~~~----~~~~~~~~~~~l~~~a~LLgv~~~~L~ 367 (995)
T 2ycu_A 311 --GFSHEEIISMLRMV-----------SAVL------QFGNIALKRERN----TDQATMPDNTAAQKLCRLLGLGVTDFS 367 (995)
T ss_dssp --TCCHHHHHHHHHHH-----------HHHH------HGGGCCCEECSS----SCCEECSCCHHHHHHHHHTTCCHHHHH
T ss_pred --CCCHHHHHHHHHHH-----------HHHH------hhccceEeecCC----CcccccCChHHHHHHHHHHCCCHHHHH
Confidence 99999999999999 9999 999999988643 466788999999999999999999999
Q ss_pred HhHhhceEEecCeEEEEeCCcccc
Q psy8603 160 AALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 160 ~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
++||++++.++||.+++|+|++||
T Consensus 368 ~~l~~~~~~~~~e~v~~~~~~~qa 391 (995)
T 2ycu_A 368 RALLTPRIKVGRDYVQKAQTKEQA 391 (995)
T ss_dssp HHHHSCEEESSSSEEECCCCHHHH
T ss_pred HHhcCcEEEcCCceecCCCCHHHH
Confidence 999999999999999999999987
No 7
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=100.00 E-value=1e-40 Score=321.64 Aligned_cols=157 Identities=29% Similarity=0.424 Sum_probs=149.9
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|.+|.+|+||++++ ..++++||++ |..++.||+++
T Consensus 256 a~i~~yLLEksRvv~q~~~ERnfHIFYqll~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~l- 334 (1010)
T 1g8x_A 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDEDEFKITRQAMDIV- 334 (1010)
T ss_dssp EEEEEECCCGGGGTCCCTTCCCBHHHHHHHHHCCHHHHHHHTCCCGGGCGGGSSSSCCCCBTCCHHHHHHHHHHHHHHH-
T ss_pred eEEEEEEcCCceeeeecCCCCcchhHHHHHcCCCHHHHHHhCCCChHhcchhcCCCccccCCCChHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999998 7889999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETL 158 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L 158 (184)
||+++++..||++| |||| |||||+|.... .+.+.+.+.+.++.+|.||||++++|
T Consensus 335 ---g~~~~e~~~i~~il-----------aaIL------hLGni~F~~~~-----~~~~~~~~~~~l~~~a~LLgv~~~~L 389 (1010)
T 1g8x_A 335 ---GFSQEEQMSIFKII-----------AGIL------HLGNIKFEKGA-----GEGAVLKDKTALNAASTVFGVNPSVL 389 (1010)
T ss_dssp ---TCCHHHHHHHHHHH-----------HHHH------HHTTCCCBCCT-----TSSCBCSCCHHHHHHHHHHTSCHHHH
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------HhccceEEecC-----CCccccCChHHHHHHHHHHCCCHHHH
Confidence 99999999999999 9999 99999998754 25677889999999999999999999
Q ss_pred HHhHhhceEEecCeEEEEeCCcccc
Q psy8603 159 LAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 159 ~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
.++||++++.++||.+++|+|++||
T Consensus 390 ~~~l~~~~~~~~~e~v~~~~~~~qa 414 (1010)
T 1g8x_A 390 EKALMEPRILAGRDLVAQHLNVEKS 414 (1010)
T ss_dssp HHHHHSCEEESSSSEEECCCCSHHH
T ss_pred HHHHhCcEEEeCCeeEEeCCCHHHH
Confidence 9999999999999999999999987
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=100.00 E-value=9.4e-41 Score=323.88 Aligned_cols=157 Identities=25% Similarity=0.324 Sum_probs=144.3
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc-ccCCCCCccc-hHHHHHHHHhhh
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LELPSFPGAS-NETLLQKFNTVH 78 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~-~~~~~~dd~~-f~~l~~al~~l~ 78 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|.+|.+|+||++++ ..++++||+. |..++.||+++
T Consensus 237 a~i~~yLLEKsRVv~q~~~ERnfHIFYqllag~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~dD~~~f~~~~~A~~~l- 315 (1080)
T 2dfs_A 237 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQGGSPVIDGIDDAKEMVNTRQACTLL- 315 (1080)
T ss_dssp EEEEEECCCCGGGTCCCTTCCSBHHHHHHHHTTTSSGGGGTCCCCTTTCTTTSTTSCCSCTTCCHHHHHHHHHHHHHHT-
T ss_pred ecceeEeecCceeeccCCCCCcchhHHHHHcCCChHHHHHccCCCHHhcCcccCCCCCCCCCccHHHHHHHHHHHHHHc-
Confidence 68999999999999999999999999999999999999999999999999999988 5789999998 99999999999
Q ss_pred cCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeee-cCHHHHHHHHHhcCCCHHH
Q psy8603 79 RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTV-RNTEVVVLISELLRVKKET 157 (184)
Q Consensus 79 ~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~-~~~~~l~~~a~LLgv~~~~ 157 (184)
||+++++..||++| |||| |||||+|...+ ++.+.+ .+.+.++.+|.||||++++
T Consensus 316 ---g~~~~e~~~i~~il-----------aaIL------hLGni~F~~~~-----~~~~~~~~~~~~l~~~a~LLgv~~~~ 370 (1080)
T 2dfs_A 316 ---GISDSYQMGIFRIL-----------AGIL------HLGNVEFASRD-----SDSCAIPPKHDPLTIFCDLMGVDYEE 370 (1080)
T ss_dssp ---TCCHHHHHHHHHHH-----------HHHH------HHTTCCCEEET-----TTEEECCSSCHHHHHHHHHHTCCHHH
T ss_pred ---CCCHHHHHHHHHHH-----------HHHH------hccCceEEecC-----CcceeecCChHHHHHHHHHhCCCHHH
Confidence 99999999999999 9999 99999998754 245555 7889999999999999999
Q ss_pred HHHhHhhceEEecCeEEEEeCCcccc
Q psy8603 158 LLAALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 158 L~~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
|.++||++++.++||.+++|++++||
T Consensus 371 L~~~l~~~~~~~~~e~i~~~~~~~qa 396 (1080)
T 2dfs_A 371 MAHWLCHRKLATATETYIKPISKLHA 396 (1080)
T ss_dssp HHHHHHEEEECC----EEEECCHHHH
T ss_pred HHHHhcccEEEeCCceEEeCCCHHHH
Confidence 99999999999999999999999987
No 9
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=100.00 E-value=1e-40 Score=314.70 Aligned_cols=159 Identities=28% Similarity=0.450 Sum_probs=139.1
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccccccccc-----------------------
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIEL----------------------- 57 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~----------------------- 57 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|.++.+|+||+++..
T Consensus 219 a~I~~YLLEKSRVv~q~~gERNfHIFYqLlaG~~~~~~~~l~L~~~~~y~yL~~g~~~~~~~~~~~~~i~~~~~s~~~~~ 298 (784)
T 2v26_A 219 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLK 298 (784)
T ss_dssp EEEEEECCCCGGGTCCCTTCCSBHHHHHHHHHSCHHHHHHTTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHH
T ss_pred eeeeeeeccCCeEeeecCCCCcchhhHHHHcCCCHHHHHHcCCCChhhCccccCCCcccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999999999999999999988741
Q ss_pred ----cCCCCCccc-hHHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCC
Q psy8603 58 ----ELPSFPGAS-NETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHH 132 (184)
Q Consensus 58 ----~~~~~dd~~-f~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~ 132 (184)
..+++||++ |+.+++||+++ ||+++++..||++| |||| |||||+|.+... .
T Consensus 299 ~~~~~~~~~dD~~~f~~~~~Am~~l----G~~~~e~~~i~~il-----------aaIL------hLGNi~F~~~~~---~ 354 (784)
T 2v26_A 299 AGSLKDPLLDDHGDFIRMCTAMKKI----GLDDEEKLDLFRVV-----------AGVL------HLGNIDFEEAGS---T 354 (784)
T ss_dssp HCCBCCSSCCHHHHHHHHHHHHHHT----TCCHHHHHHHHHHH-----------HHHH------HHHTCCEEECTT---T
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHc----CCCHHHHHHHHHHH-----------HHHH------hcccceeeeccC---C
Confidence 345789988 99999999999 99999999999999 9999 999999988432 1
Q ss_pred Cceeee--cCHHHHHHHHHhcCCCHHHHHHhHhhceEE-----ecCeEEEEeCCcccc
Q psy8603 133 DESVTV--RNTEVVVLISELLRVKKETLLAALTAKHAR-----ASDETLVINYRLPEV 183 (184)
Q Consensus 133 ~~~~~~--~~~~~l~~~a~LLgv~~~~L~~aLt~~~~~-----~~ge~i~~~~~~~ea 183 (184)
++.+.+ .+.+.++.+|+||||++++|.++||++++. ++||.+++|++++||
T Consensus 355 ~~~~~v~~~~~~~l~~~a~LLgv~~~~L~~aL~~r~~~t~~g~~~ge~i~~~l~~~qA 412 (784)
T 2v26_A 355 SGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQA 412 (784)
T ss_dssp TSSEEECGGGHHHHHHHHHHHTCCHHHHHHHHHEEEC-----------CEEECCHHHH
T ss_pred CCccccccCCHHHHHHHHHHhCCCHHHHHHHHhhcEEeccccCCCCCeEeecCCHHHH
Confidence 344455 468899999999999999999999999987 689999999999987
No 10
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=100.00 E-value=9.9e-41 Score=326.51 Aligned_cols=158 Identities=22% Similarity=0.390 Sum_probs=150.8
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCcccccccccccccCCCCCccc-hHHHHHHHHhhhc
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELPSFPGAS-NETLLQKFNTVHR 79 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~dd~~-f~~l~~al~~l~~ 79 (184)
|+|++|||||||||+|++||||||||||||+|++++++..|+|.+|.+|+||+++...++++||+. |..++.||+++
T Consensus 264 a~i~~ylLEksRv~~q~~~ErnfhiFYqll~g~~~~~~~~l~l~~~~~~~yl~~~~~~~~~~~d~~~f~~~~~a~~~l-- 341 (1184)
T 1i84_S 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIPAQQDDEMFQETLEAMTIM-- 341 (1184)
T ss_dssp EEEEECCCCCGGGSCCCTTCCCCTHHHHHHHHCCHHHHHHTTCCCTTSCSSCTTSSCCCTTCCHHHHHHHHHHHHHHH--
T ss_pred eEEeEeecCCceeeeecCCCCchhhHHHHHcCCCHHHHHHcCCCChHhCCccCCCCcCCCCCChHHHHHHHHHHHHhc--
Confidence 689999999999999999999999999999999999999999999999999999888889999998 99999999999
Q ss_pred CCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHHHHHhcCCCHHHHH
Q psy8603 80 DNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLL 159 (184)
Q Consensus 80 ~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~ 159 (184)
||+++++..||++| |||| |||||+|..... ++.+.+.+.+.+..+|.||||++++|.
T Consensus 342 --g~~~~e~~~i~~il-----------aaiL------hlGni~f~~~~~----~~~~~~~~~~~~~~~a~lLg~~~~~l~ 398 (1184)
T 1i84_S 342 --GFTEEEQTSILRVV-----------SSVL------QLGNIVFKKERN----TDQASMPDNTAAQKVCHLMGINVTDFT 398 (1184)
T ss_dssp --TCCHHHHHHHHHHH-----------HHHH------HTTTCCCBCCTT----TSCCBCCCSHHHHHHHHHTTSCHHHHH
T ss_pred --eeCHHHHHHHHHHH-----------HHHH------hhcCceeeccCC----CcCcccCChHHHHHHHHHHCCCHHHHH
Confidence 99999999999999 9999 999999987643 466778899999999999999999999
Q ss_pred HhHhhceEEecCeEEEEeCCcccc
Q psy8603 160 AALTAKHARASDETLVINYRLPEV 183 (184)
Q Consensus 160 ~aLt~~~~~~~ge~i~~~~~~~ea 183 (184)
++||++++.+++|.+++|+|++||
T Consensus 399 ~~l~~~~~~~~~e~~~~~~~~~~a 422 (1184)
T 1i84_S 399 RSILTPRIKVGRDVVQKAQTKEQA 422 (1184)
T ss_dssp HHHHSCCCCCTTSCCCCCCCHHHH
T ss_pred HHhcCcEEEeCCceEecCCCHHHH
Confidence 999999999999999999999987
No 11
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=100.00 E-value=1.1e-39 Score=314.63 Aligned_cols=161 Identities=29% Similarity=0.445 Sum_probs=136.0
Q ss_pred CeeeeeecccceecccCCCCCchhhHHHHHhCCCHHHHhhcCCCCccccccccccc------------------------
Q psy8603 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE------------------------ 56 (184)
Q Consensus 1 a~i~~YLLEKSRVv~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~------------------------ 56 (184)
|+|++|||||||||+|++||||||||||||+|+++++++.|+|.+|++|+||+++.
T Consensus 223 a~I~~YLLEKSRVv~q~~gERNfHIFYqLlaGa~~~~r~~l~L~~~~~y~yL~qg~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1052)
T 4anj_A 223 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYFANKETDKQILQNRKSPEYLK 302 (1052)
T ss_dssp EEEEEECCCSGGGTCCCTTCCSBHHHHHHHHHCCHHHHHHHTCCCGGGCHHHHTSCCCCBCCHHHHTTSCGGGCCHHHHH
T ss_pred EEEeccccccCceeecCCCCCCcccHHHHhcCCCHHHHHHcCCCChHhCchhcCCCccccccccchhhhcccccchhhcc
Confidence 68999999999999999999999999999999999999999999999999998752
Q ss_pred ---ccCCCCCccc-hHHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCC
Q psy8603 57 ---LELPSFPGAS-NETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHH 132 (184)
Q Consensus 57 ---~~~~~~dd~~-f~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~ 132 (184)
..++++||+. |..+++||+++ ||+++++..||++| |||| |||||+|.+.... ..
T Consensus 303 ~g~~~~~~~dD~~~f~~~~~Am~~l----Gfs~~e~~~I~~iL-----------AaIL------hLGNi~F~~~~~~-~~ 360 (1052)
T 4anj_A 303 AGSLKDPLLDDHGDFIRMCTAMKKI----GLDDEEKLDLFRVV-----------AGVL------HLGNIDFEEAGST-SG 360 (1052)
T ss_dssp HCCBCCSSCCHHHHHHHHHHHHHHH----TCCHHHHHHHHHHH-----------HHHH------HHHTCCEEC-------
T ss_pred CCCccCCCcchHHHHHHHHHHHHHc----CCCHHHHHHHHHHH-----------HHHH------hhcceeEEecCCC-CC
Confidence 3467889988 99999999999 99999999999999 9999 9999999875431 12
Q ss_pred CceeeecCHHHHHHHHHhcCCCHHHHHHhHhhceEE-----ecCeEEEEeCCcccc
Q psy8603 133 DESVTVRNTEVVVLISELLRVKKETLLAALTAKHAR-----ASDETLVINYRLPEV 183 (184)
Q Consensus 133 ~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~~~~~-----~~ge~i~~~~~~~ea 183 (184)
.+.+.+.+.+.++.+|+||||++++|.++||++++. ++||.+++|++++||
T Consensus 361 ~~~~~~~~~~~l~~~a~LLgv~~~~L~~aLt~r~~~~~~~~~~~e~i~~~l~~~qA 416 (1052)
T 4anj_A 361 GCNLKNKSTQALEYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQA 416 (1052)
T ss_dssp -CEECGGGHHHHHHHHHHTTCCHHHHHHHHHEEC-------------CEECCHHHH
T ss_pred CcccccCChHHHHHHHHHhCCCHHHHHHHHhhceeeecccccCceEEEecCCHHHH
Confidence 234456678899999999999999999999998874 689999999999987
No 12
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=69.16 E-value=3.5 Score=39.03 Aligned_cols=43 Identities=37% Similarity=0.675 Sum_probs=26.3
Q ss_pred HHHHHHHHhhh-cCCCCCccccccceeeeeeccCcceeeeccce
Q psy8603 68 ETLLQKFNTVH-RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 68 ~~l~~al~~l~-~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
+.+.+.|...+ .++.....+...-..+.|.||||+|.|++.-+
T Consensus 521 ~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gf 564 (795)
T 1w7j_A 521 DTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGF 564 (795)
T ss_dssp HHHHHHHHHHHTTTCTTEECCTTCSSEEEEECSSCEEEEECTTH
T ss_pred HHHHHHHHHHhhccCCccccCCCCCCceEEEecceEEEEechhH
Confidence 34444444433 33343333333345788999999999997776
No 13
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=67.22 E-value=3.9 Score=39.98 Aligned_cols=43 Identities=37% Similarity=0.675 Sum_probs=26.0
Q ss_pred HHHHHHHHhhh-cCCCCCccccccceeeeeeccCcceeeeccce
Q psy8603 68 ETLLQKFNTVH-RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 68 ~~l~~al~~l~-~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL 110 (184)
..+.+.|...+ .++.....+...-..+.|.||||+|.|++.-+
T Consensus 521 ~~f~~kl~~~~~~~~~~f~~p~~~~~~F~I~HyAG~V~Y~~~gf 564 (1080)
T 2dfs_A 521 DTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQCEGF 564 (1080)
T ss_dssp HHHHHHHHHHHBTTBSSEECCTTCSSEEEEECSSCEEEEECTTH
T ss_pred HHHHHHHHHHhhcCCCCccCCCCCCCceEEEecceEEEEehhhH
Confidence 34444544433 33343333333345788899999999997777
No 14
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=67.03 E-value=4.3 Score=39.82 Aligned_cols=44 Identities=20% Similarity=0.535 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhhcCCCCCccccc--cceeeeeeccCcceeeeccce
Q psy8603 67 NETLLQKFNTVHRDNPFYEIPQR--RENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 67 f~~l~~al~~l~~~~gf~~~e~~--~i~~il~~h~ag~V~y~aaIL 110 (184)
...+.+.|...+.++.....+.. .-..+.|.||||+|.|.+.-+
T Consensus 551 d~~~~~kl~~~~~~~~~~~~~~~~~~~~~F~i~Hyag~V~Y~~~gf 596 (1184)
T 1i84_S 551 DTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNASAW 596 (1184)
T ss_dssp HHHHHHHHHHHTSSCTTEEECSSCTTTCEEEEECSSCEEEEECTTH
T ss_pred hHHHHHHHHHHhCCCCCccCCCCCCCCCcEEEECCCceEEeccCCc
Confidence 44555666555444443332221 345788899999999997776
No 15
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=65.08 E-value=4.6 Score=39.22 Aligned_cols=19 Identities=42% Similarity=0.753 Sum_probs=16.7
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
-.+.|.||||+|.|++.-+
T Consensus 566 ~~F~i~HyAG~V~Y~~~gf 584 (1010)
T 1g8x_A 566 TEFGVTHYAGQVMYEIQDW 584 (1010)
T ss_dssp SEEEEEETTEEEEEECTTH
T ss_pred CCEEEeeeceEEEEeecCc
Confidence 4788999999999998777
No 16
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=61.69 E-value=5.4 Score=37.62 Aligned_cols=19 Identities=42% Similarity=0.753 Sum_probs=16.8
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
..+.|.||||+|.|++.-+
T Consensus 566 ~~F~I~HyAG~V~Y~~~gf 584 (770)
T 1w9i_A 566 TEFGVTHYAGQVMYEIQDW 584 (770)
T ss_dssp SEEEEEETTEEEEEECTTH
T ss_pred CceEeeccCccccccccCh
Confidence 6788999999999998777
No 17
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=57.47 E-value=8 Score=36.52 Aligned_cols=19 Identities=37% Similarity=0.934 Sum_probs=16.5
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
..+.|.||||+|.|++.-+
T Consensus 571 ~~F~I~HyAG~V~Y~~~gf 589 (784)
T 2v26_A 571 EGFIIRHFAGAVCYETTQF 589 (784)
T ss_dssp SEEEEEETTEEEEEECTTH
T ss_pred CceEeeecCccEeeeccCH
Confidence 3688899999999997777
No 18
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=54.43 E-value=8.2 Score=36.71 Aligned_cols=20 Identities=35% Similarity=0.652 Sum_probs=16.9
Q ss_pred ceeeeeeccCcceeeeccce
Q psy8603 91 ENAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 91 i~~il~~h~ag~V~y~aaIL 110 (184)
-..+.|.||||+|.|++.-+
T Consensus 575 ~~~F~I~HyAG~V~Y~~~gf 594 (837)
T 1kk8_A 575 PAHFELHHYAGNVPYSITGW 594 (837)
T ss_dssp CCSEEEEETTEEEEECCSSH
T ss_pred CCceEEeeccCcccccHHHH
Confidence 35678899999999997777
No 19
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=54.41 E-value=8.1 Score=36.48 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=16.2
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
..+.|.||||+|.|++.-+
T Consensus 575 ~~F~I~HyAG~V~Y~~~gf 593 (783)
T 4db1_A 575 AHFSLIHYAGIVDYNIIGW 593 (783)
T ss_dssp CCEEEEETTEEEEECCTTH
T ss_pred CCeEEeCcCCceEEeCcCh
Confidence 4578899999999997766
No 20
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=51.59 E-value=9.1 Score=37.07 Aligned_cols=19 Identities=47% Similarity=0.880 Sum_probs=16.3
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
..+.|.||||+|.|++.-+
T Consensus 547 ~~F~i~HyAG~V~Y~~~gf 565 (995)
T 2ycu_A 547 ADFSVLHYAGKVDYKANEW 565 (995)
T ss_dssp SSEEEEETTEEEEECCTTH
T ss_pred CeeEEECCCCCccccccch
Confidence 5678899999999997776
No 21
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=51.50 E-value=4.2 Score=37.90 Aligned_cols=19 Identities=42% Similarity=0.835 Sum_probs=16.7
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
..+.|.||||+|.|++.-+
T Consensus 501 ~~F~I~HyAG~V~Y~~~gf 519 (697)
T 1lkx_A 501 TCFRLKHYAGDVTYDVRGF 519 (697)
T ss_dssp TEEEEEETTEEEEEECTTH
T ss_pred CceeeeeeeeEEEEccCCh
Confidence 5788899999999997777
No 22
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=48.00 E-value=12 Score=36.42 Aligned_cols=19 Identities=37% Similarity=0.934 Sum_probs=16.3
Q ss_pred eeeeeeccCcceeeeccce
Q psy8603 92 NAFIVKHYAGKVKYQSGPY 110 (184)
Q Consensus 92 ~~il~~h~ag~V~y~aaIL 110 (184)
-.+.|.||||.|+|++.-+
T Consensus 575 ~~F~I~HyAG~V~Y~~~gf 593 (1052)
T 4anj_A 575 EGFIIRHFAGAVCYETTQF 593 (1052)
T ss_dssp SEEEEEETTEEEEEECTTH
T ss_pred CCeEEEcCCccEEEecCCh
Confidence 3588999999999997777
No 23
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=37.74 E-value=34 Score=21.49 Aligned_cols=26 Identities=15% Similarity=0.064 Sum_probs=22.2
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHhHhh
Q psy8603 139 RNTEVVVLISELLRVKKETLLAALTA 164 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~aLt~ 164 (184)
.+.+.+..+|..|||+.+.|...+..
T Consensus 54 ~~~~~l~~l~~~l~~~~~~l~~~~~~ 79 (83)
T 3f6w_A 54 LDVIEFMDFCRGIGTDPYALLSKLEA 79 (83)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 46788999999999999999877654
No 24
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=35.10 E-value=34 Score=20.25 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=18.6
Q ss_pred cCHHHHHHHHHhcCCCHHHHHH
Q psy8603 139 RNTEVVVLISELLRVKKETLLA 160 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~ 160 (184)
.+.+.+..+|..||++.+.|..
T Consensus 45 ~~~~~l~~i~~~l~~~~~~l~~ 66 (68)
T 2r1j_L 45 PNGENLLALSKALQCSPDYLLK 66 (68)
T ss_dssp CBHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHhc
Confidence 3567899999999999998864
No 25
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=32.22 E-value=36 Score=21.54 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=19.6
Q ss_pred ecCHHHHHHHHHhcCCCHHHHHH
Q psy8603 138 VRNTEVVVLISELLRVKKETLLA 160 (184)
Q Consensus 138 ~~~~~~l~~~a~LLgv~~~~L~~ 160 (184)
..+.+.+..+|..|||+.+.|..
T Consensus 50 ~p~~~~l~~ia~~l~v~~~~l~~ 72 (78)
T 3qq6_A 50 NPSIQFLEKVSAVLDVSVHTLLD 72 (78)
T ss_dssp CCBHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHCcCHHHHhC
Confidence 34678899999999999998865
No 26
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.60 E-value=46 Score=20.18 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHhcCCCHHHHHH
Q psy8603 139 RNTEVVVLISELLRVKKETLLA 160 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~ 160 (184)
.+.+.+..+|..|||+.+.|..
T Consensus 45 ~~~~~l~~ia~~l~~~~~~l~~ 66 (76)
T 1adr_A 45 PNGENLLALSKALQCSPDYLLK 66 (76)
T ss_dssp CCHHHHHHHHHHTTSCHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhc
Confidence 4677899999999999998864
No 27
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=31.15 E-value=42 Score=19.68 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHhcCCCHHHHH
Q psy8603 139 RNTEVVVLISELLRVKKETLL 159 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~ 159 (184)
.+.+.+..+|..||++.+.|.
T Consensus 41 ~~~~~l~~i~~~l~~~~~~l~ 61 (66)
T 2xi8_A 41 PSLQLALKIAYYLNTPLEDIF 61 (66)
T ss_dssp CCHHHHHHHHHHTTSCHHHHE
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 467889999999999998874
No 28
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=29.33 E-value=41 Score=22.38 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.5
Q ss_pred HHHHHHhcCCCHHHHHHhHh
Q psy8603 144 VVLISELLRVKKETLLAALT 163 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt 163 (184)
+..+|++|+++.++.++.|.
T Consensus 33 l~~La~ll~ls~~~vE~~ls 52 (84)
T 1ufm_A 33 FEELGALLEIPAAKAEKIAS 52 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 78999999999977766554
No 29
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=28.95 E-value=48 Score=20.23 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=19.5
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHh
Q psy8603 139 RNTEVVVLISELLRVKKETLLAA 161 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~a 161 (184)
.+.+.+..+|..||++.+.|...
T Consensus 50 ~~~~~l~~la~~l~~~~~~l~~~ 72 (77)
T 2b5a_A 50 ISLINIHKICAALDIPASTFFRK 72 (77)
T ss_dssp CBHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHhcc
Confidence 45678999999999999998753
No 30
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=28.78 E-value=43 Score=20.51 Aligned_cols=23 Identities=4% Similarity=0.083 Sum_probs=19.1
Q ss_pred ecCHHHHHHHHHhcCCCHHHHHH
Q psy8603 138 VRNTEVVVLISELLRVKKETLLA 160 (184)
Q Consensus 138 ~~~~~~l~~~a~LLgv~~~~L~~ 160 (184)
..+.+.+..+|..|||+.+.|..
T Consensus 47 ~~~~~~l~~ia~~l~~~~~~l~~ 69 (78)
T 3b7h_A 47 RPTITTIRKVCGTLGISVHDFFD 69 (78)
T ss_dssp CCCHHHHHHHHHHHTCCHHHHTC
T ss_pred CCCHHHHHHHHHHcCCCHHHHhc
Confidence 34678899999999999998853
No 31
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=27.07 E-value=53 Score=20.51 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHh
Q psy8603 139 RNTEVVVLISELLRVKKETLLAA 161 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~a 161 (184)
.+.+.+..+|..|||+.+.|..-
T Consensus 51 ~~~~~l~~ia~~l~v~~~~l~~~ 73 (82)
T 3s8q_A 51 LTIKSLELIMKGLEVSDVVFFEM 73 (82)
T ss_dssp CBHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhcC
Confidence 46788999999999999998754
No 32
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=26.90 E-value=20 Score=22.63 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=20.6
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHhHh
Q psy8603 139 RNTEVVVLISELLRVKKETLLAALT 163 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~aLt 163 (184)
.+.+.+..+|..|||+.++|...|.
T Consensus 52 ~~~~~~~~ia~~l~v~~~~l~~~l~ 76 (80)
T 3kz3_A 52 LNAYNAALLAKILKVSVEEFSPSIA 76 (80)
T ss_dssp CCHHHHHHHHHHHTSCGGGTCHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHhHHHH
Confidence 4568899999999999987766654
No 33
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.65 E-value=55 Score=21.45 Aligned_cols=28 Identities=14% Similarity=0.180 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHhHhhce
Q psy8603 139 RNTEVVVLISELLRVKKETLLAALTAKH 166 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~aLt~~~ 166 (184)
.+.+.+..+|.-+|++.+.+..+++.++
T Consensus 30 Ps~eei~~LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 30 PNSDELLKISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 4567899999999999999999999875
No 34
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=25.22 E-value=55 Score=20.64 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=18.9
Q ss_pred cCHHHHHHHHHhcCCCHHHHHH
Q psy8603 139 RNTEVVVLISELLRVKKETLLA 160 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~ 160 (184)
.+.+.+..+|..|||+.++|..
T Consensus 55 p~~~~l~~ia~~l~v~~~~l~~ 76 (86)
T 2ofy_A 55 PAFFTIAAVARVLDLSLDDVAA 76 (86)
T ss_dssp CBHHHHHHHHHHTTCCHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHhc
Confidence 4567899999999999999864
No 35
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=24.00 E-value=64 Score=20.59 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCCCHHHHH
Q psy8603 141 TEVVVLISELLRVKKETLL 159 (184)
Q Consensus 141 ~~~l~~~a~LLgv~~~~L~ 159 (184)
+.....+|..|||+++.|.
T Consensus 48 p~~~~~IA~aLgv~~~~L~ 66 (74)
T 1neq_A 48 PKGEQIIANALETKPEVIW 66 (74)
T ss_dssp HHHHHHHHHHTTSCHHHHC
T ss_pred ccHHHHHHHHHCcCHHHHh
Confidence 4445569999999999874
No 36
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=23.83 E-value=62 Score=21.57 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=19.9
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHh
Q psy8603 139 RNTEVVVLISELLRVKKETLLAA 161 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~a 161 (184)
.+.+.+..+|..|||+.+.|...
T Consensus 68 ps~~~l~~ia~~l~v~~~~l~~~ 90 (99)
T 3g5g_A 68 LTIKSLELIMKGLEVSDVVFFEM 90 (99)
T ss_dssp CBHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCHHHHhcc
Confidence 46788999999999999998764
No 37
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=23.47 E-value=44 Score=18.74 Aligned_cols=42 Identities=12% Similarity=0.110 Sum_probs=28.5
Q ss_pred eecCHHHHHHHHHhcCCCHHHHHHhHhhceEEecCeEEEEeC
Q psy8603 137 TVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINY 178 (184)
Q Consensus 137 ~~~~~~~l~~~a~LLgv~~~~L~~aLt~~~~~~~ge~i~~~~ 178 (184)
.+...+.+..+|.-.|++.++|.++=-.......|+.+..|.
T Consensus 6 ~V~~GDtl~~Ia~~~~~~~~~l~~~N~~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 6 RVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFV 47 (48)
T ss_dssp EECTTCCHHHHHHHHTCCHHHHHHHCSCGGGCCTTEEEECCC
T ss_pred EEcCCCcHHHHHHHHCcCHHHHHHhCCCCCcCCcCCEEEEec
Confidence 455556799999999999999877432222234577777664
No 38
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=23.44 E-value=29 Score=21.31 Aligned_cols=21 Identities=29% Similarity=0.339 Sum_probs=18.0
Q ss_pred cCHHHHHHHHHhcCCCHHHHH
Q psy8603 139 RNTEVVVLISELLRVKKETLL 159 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~ 159 (184)
.+.+.+..+|..|||+.+.|.
T Consensus 48 ~~~~~l~~ia~~l~v~~~~l~ 68 (73)
T 3omt_A 48 PSLETLFDIAEALNVDVRELI 68 (73)
T ss_dssp CCHHHHHHHHHHHTSCGGGGB
T ss_pred CCHHHHHHHHHHHCcCHHHHh
Confidence 567889999999999988763
No 39
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=22.32 E-value=63 Score=19.93 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=17.5
Q ss_pred HHHHHHhcCCCHHHHHHhHhh
Q psy8603 144 VVLISELLRVKKETLLAALTA 164 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~ 164 (184)
...+|++|||+...|......
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 457899999999999887654
No 40
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=21.98 E-value=73 Score=22.01 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCCCHHHHHHhHhh
Q psy8603 142 EVVVLISELLRVKKETLLAALTA 164 (184)
Q Consensus 142 ~~l~~~a~LLgv~~~~L~~aLt~ 164 (184)
..+..+|..|||+.++|...+-.
T Consensus 56 ~~l~~iA~~Lgv~~~~L~~~~~~ 78 (112)
T 2wus_R 56 SYIKRYSEFLELSPDEMLKLYEE 78 (112)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCHHHHHHHHHh
Confidence 56889999999999999876543
No 41
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=21.93 E-value=66 Score=19.63 Aligned_cols=22 Identities=9% Similarity=0.125 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCHHHHHHhHhhc
Q psy8603 144 VVLISELLRVKKETLLAALTAK 165 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt~~ 165 (184)
...+|++|||+...|..-|-.-
T Consensus 35 ~~~aA~~LGisr~tL~rklkk~ 56 (63)
T 3e7l_A 35 LKRTAEEIGIDLSNLYRKIKSL 56 (63)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHCcCHHHHHHHHHHh
Confidence 5689999999999998876543
No 42
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=21.81 E-value=69 Score=21.46 Aligned_cols=22 Identities=9% Similarity=0.311 Sum_probs=19.4
Q ss_pred cCHHHHHHHHHhcCCCHHHHHH
Q psy8603 139 RNTEVVVLISELLRVKKETLLA 160 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~ 160 (184)
.+.+.+..+|..|||+.+.|..
T Consensus 49 p~~~~l~~la~~l~v~~~~l~~ 70 (114)
T 3op9_A 49 PDIEKLIRLATYFHLSIDELVG 70 (114)
T ss_dssp CCHHHHHHHHHHHTCCHHHHHT
T ss_pred CCHHHHHHHHHHhCCCHHHHhc
Confidence 5678899999999999999864
No 43
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=20.89 E-value=61 Score=19.77 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCHHHHHHhHh
Q psy8603 144 VVLISELLRVKKETLLAALT 163 (184)
Q Consensus 144 l~~~a~LLgv~~~~L~~aLt 163 (184)
...+|++|||+...|..-|-
T Consensus 36 ~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 36 TRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp HHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH
Confidence 56799999999999877664
No 44
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.77 E-value=31 Score=22.91 Aligned_cols=58 Identities=12% Similarity=0.095 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhhcCCCCCccccccceeeeeeccCcceeeeccceecCCCccccceeeecCCCCCCCCceeeecCHHHHHH
Q psy8603 67 NETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVL 146 (184)
Q Consensus 67 f~~l~~al~~l~~~~gf~~~e~~~i~~il~~h~ag~V~y~aaIL~~~~~~~lGni~f~~~~~~~~~~~~~~~~~~~~l~~ 146 (184)
++.++..+... |+++.+......|= -.- +.+++ . +. . .+.+.+..
T Consensus 26 ~~rLk~lR~~~----glTq~eLA~~~GiS-----------~~t--------is~iE-----~----G~--~-~s~~~l~k 70 (88)
T 3t76_A 26 YNKLWKLLIDR----DMKKGELREAVGVS-----------KST--------FAKLG-----K----NE--N-VSLTVLLA 70 (88)
T ss_dssp CHHHHHHHHHT----TCCHHHHHHHHTCC-----------HHH--------HHHHH-----T----TC--C-CCHHHHHH
T ss_pred HHHHHHHHHHc----CCCHHHHHHHHCcC-----------HHH--------HHHHH-----c----CC--C-cCHHHHHH
Confidence 77888888888 99987765443221 111 11211 1 11 2 37789999
Q ss_pred HHHhcCCCHHHHH
Q psy8603 147 ISELLRVKKETLL 159 (184)
Q Consensus 147 ~a~LLgv~~~~L~ 159 (184)
+|..|||+.++|.
T Consensus 71 Ia~~L~v~~~~L~ 83 (88)
T 3t76_A 71 ICEYLNCDFGDII 83 (88)
T ss_dssp HHHHHTCCGGGTC
T ss_pred HHHHHCcCHHHHh
Confidence 9999999998875
No 45
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=20.32 E-value=70 Score=19.71 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHhcCCCHHHHHHh
Q psy8603 139 RNTEVVVLISELLRVKKETLLAA 161 (184)
Q Consensus 139 ~~~~~l~~~a~LLgv~~~~L~~a 161 (184)
.+.+.+..+|..|||+.+.|...
T Consensus 42 p~~~~l~~ia~~l~v~~~~l~~~ 64 (77)
T 2k9q_A 42 PVVVKYIAFLRSKGVDLNALFDR 64 (77)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHhCcCHHHHhCc
Confidence 34678999999999999998764
Done!