RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8603
(184 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 140 bits (355), Expect = 4e-39
Identities = 77/184 (41%), Positives = 100/184 (54%), Gaps = 24/184 (13%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
AVV+KYLLEKSRI SQ + ERNYHVFYYLL GAS+++R L K Y YLN+ L++
Sbjct: 176 AVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIE 235
Query: 61 SFPGASNE--TLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPE 118
+E L Q V F Q++ A + S L
Sbjct: 236 DGEDEKHEFERLKQAMEMVG----FLAATQKQIFAVL-----------SAVLLLG----- 275
Query: 119 RNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINY 178
NV + R + YH DES+ V N EVV L+S+LL+VK+ETL+ ALT K +ETL++ Y
Sbjct: 276 -NVTYKKRAT-YHRDESLEVGNPEVVDLLSQLLKVKRETLMEALTKKRTVTVNETLILPY 333
Query: 179 RLPE 182
L E
Sbjct: 334 SLSE 337
Score = 83.0 bits (205), Expect = 8e-19
Identities = 30/49 (61%), Positives = 39/49 (79%)
Query: 58 ELPSFPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQ 106
E +FP A+++TLL KFN H+DN +YE PQ +E AFI++HYAGKVKYQ
Sbjct: 458 EESNFPHATSQTLLAKFNQQHKDNKYYEGPQVKEPAFIIQHYAGKVKYQ 506
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 97.2 bits (243), Expect = 6e-24
Identities = 32/53 (60%), Positives = 40/53 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLN 53
A ++ YLLEKSR+ SQ +GERNYH+FY LLAGAS++ + L LK E Y YLN
Sbjct: 174 AKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLN 226
Score = 58.7 bits (143), Expect = 1e-10
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQRR-ENAFIVKHYAGKVKYQSGPYTLDNGGPERN 120
FP +++T L+K N H+ +P + P+++ FI+KHYAG V Y G E+N
Sbjct: 454 FPKGTDQTFLEKLNQHHKKHPHFSKPKKKGRTEFIIKHYAGDVTYDV------TGFLEKN 507
Query: 121 VEFVPR 126
+ +
Sbjct: 508 KDTLSD 513
Score = 34.8 bits (81), Expect = 0.017
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYR 179
N+EF ++ TV++ E + +ELL V E L ALT + + E +
Sbjct: 274 NIEFEEGRNDNAA---STVKDKEELSNAAELLGVDPEELEKALTKRKIKTGGEVITKPLN 330
Query: 180 LPEVL 184
+ + L
Sbjct: 331 VEQAL 335
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 95.8 bits (239), Expect = 2e-23
Identities = 60/190 (31%), Positives = 85/190 (44%), Gaps = 33/190 (17%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A + YLLEKSR+ SQ GERN+H+FY LLAGAS ++R L LK+ ESY YLN+
Sbjct: 166 AKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQ--GGCN 223
Query: 61 SFPGASN----ETLLQKFNTVHRDNPFYEIPQRRENAF--IVKHYAGKVKYQSGPYTLDN 114
G + E L + ++ + + I+ + L
Sbjct: 224 DVDGIDDAEEFEELKEALKSL-------GFSEEEIESIFRIL----------AAILHL-- 264
Query: 115 GGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 174
G N+EF E+ V+NTEV+ +ELL + E L ALT K + E +
Sbjct: 265 G----NIEFKSVGGE--GQEAAEVKNTEVLSKAAELLGLDPEELEEALTYKVTKVGGEVI 318
Query: 175 VINYRLPEVL 184
I E +
Sbjct: 319 TIPLTKEEAV 328
Score = 51.1 bits (123), Expect = 5e-08
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 61 SFPGASNETLLQKFNTVHRDNP-FYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPER 119
FP ++ET L+K N + N FY + F +KHYAG V Y + G E+
Sbjct: 446 LFPKGTDETFLEKLNNKLKSNNAFYPAKKNAPTEFTIKHYAGDVTYDA------RGFLEK 499
Query: 120 NVEFVPR 126
N + +
Sbjct: 500 NKDVLSP 506
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 88.9 bits (221), Expect = 5e-21
Identities = 28/54 (51%), Positives = 38/54 (70%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
++ YLLEKSR+ Q GERN+H+FY LLAGAS Q++ L LK + Y YL++
Sbjct: 168 GNIETYLLEKSRVVYQTPGERNFHIFYQLLAGASAQEKKELGLKDPKDYAYLSQ 221
Score = 39.2 bits (92), Expect = 7e-04
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 62 FPGASNETLLQKFNTVHRDN-PFYEIP--QRRENAFIVKHYAGKVKYQ 106
FP A+++T L+K P + P + + +F VKHYAG V+Y
Sbjct: 449 FPKATDQTFLEKLLDTFSSKHPHFSKPRFGQGDTSFTVKHYAGDVEYN 496
Score = 27.3 bits (61), Expect = 6.6
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLV 175
N++F ++ +E V +TE + +I+ LL V E L AL + + ET+
Sbjct: 268 NIKFKQDQN----EEQAVVEDTEELEIIAGLLGVDPEELEKALLKRRIKTGRETVT 319
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 82.1 bits (203), Expect = 1e-18
Identities = 31/52 (59%), Positives = 35/52 (67%)
Query: 3 VQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
V YLLEKSRIC Q ERNYH+FY L AGAS+ R LHL + + YLNR
Sbjct: 172 VSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNR 223
Score = 27.1 bits (60), Expect = 6.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 7/32 (21%)
Query: 76 TVHRDNPFYEIPQRRENAFIVKHYAGKVKYQS 107
VHR+ R + FI++H+AG V Y++
Sbjct: 513 AVHRN-------LRDDEGFIIRHFAGAVCYET 537
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 81.1 bits (201), Expect = 3e-18
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 6 YLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
YLLEKSR+ SQ +GERN+H+FY LLAGAS+Q L L+K E Y+YLN+
Sbjct: 173 YLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQ 221
Score = 37.6 bits (88), Expect = 0.002
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 65 ASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKY 105
+++T L+K N +P + + F +KHYAG V Y
Sbjct: 456 GTDQTFLEKLNKKFSSHPHSDHFSSGSDEFRIKHYAGDVTY 496
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 76.7 bits (189), Expect = 9e-17
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 37/184 (20%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYL---NRIEL 57
A +++YLLEKSRI Q R ERNYH+FY +LAG S ++ L L + YHYL I
Sbjct: 165 AKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITC 224
Query: 58 ELPSFPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYA-----GKVKYQSGPYTL 112
E + F + +E I K A G +++++ +
Sbjct: 225 E--------GRDDAKDFADIRSAMKVLMFTD-QEIWEIFKLLAAILHIGNLRFEAT--EV 273
Query: 113 DNGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDE 172
DN + V +T + +++LL V + L+ ALT++ E
Sbjct: 274 DNL------------------AACEVDDTPNLQRVAQLLGVPIQDLMDALTSRTIFTRGE 315
Query: 173 TLVI 176
T+V
Sbjct: 316 TVVT 319
Score = 49.4 bits (118), Expect = 2e-07
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 52 LNRIEL--ELPSFPGASNETLLQKFNTVHRDNPFYEIPQRR-ENAFIVKHYAGKVKYQS 107
LN + L E FP +++T+L+K ++ H + Y P+ E F + H+AG V Y +
Sbjct: 435 LNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKPKSTQETQFGINHFAGVVFYDT 493
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 74.2 bits (183), Expect = 8e-16
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHL-KKIESYHYLNRIELEL 59
A ++ YLLEKSR+ Q GERNYH+FY LL+GA + + L L Y YL++ EL +
Sbjct: 180 ADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGELTI 239
Query: 60 PS 61
P
Sbjct: 240 PG 241
Score = 42.2 bits (100), Expect = 6e-05
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 62 FPGASNETLLQKFNTVHRDNP--FYEIPQRRENAFIVKHYAGKVKYQ 106
FP A+++T ++K H + + F + HYAG V Y
Sbjct: 460 FPKATDKTFVEKLYDNHLGKSKFKKPKKGKAKAHFSLVHYAGTVDYN 506
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 73.1 bits (180), Expect = 2e-15
Identities = 28/53 (52%), Positives = 36/53 (67%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLN 53
A ++ YLLEKSR+ Q GERNYH+FY L AGA Q+ LHL + ++YLN
Sbjct: 171 ANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLN 223
Score = 45.0 bits (107), Expect = 7e-06
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 15/109 (13%)
Query: 63 PGASNETLLQKFNTVH--RDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERN 120
P S+E+ QK + NP +E P+ + +F VKH+A V+Y +G E+N
Sbjct: 453 PKGSDESWAQKLYNKLPKKKNPHFEKPRFGQTSFTVKHFADDVEYDV------DGFLEKN 506
Query: 121 VEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARA 169
+ V DE + V + E+L + ++ +AK A
Sbjct: 507 RDTVS-------DEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPA 548
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 72.4 bits (178), Expect = 4e-15
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLN 53
A ++ YLLEKSR+ Q + ERNYH+FY LLAG ++ + L L+ + Y YL+
Sbjct: 235 AKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLS 287
Score = 44.7 bits (106), Expect = 1e-05
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 63 PGASNETLLQKFNTVHRD--NPFYEIPQRRENAFIVKHYAGKVKYQ 106
P A++E+ K NP ++ + R+N F+VKHYAG V+Y
Sbjct: 515 PHATDESFTSKLAQRLNKNSNPKFKKSRFRDNKFVVKHYAGDVEYD 560
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 71.8 bits (176), Expect = 6e-15
Identities = 52/188 (27%), Positives = 85/188 (45%), Gaps = 35/188 (18%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIE-LEL 59
A +Q +LLEKSR+ RGER+YH+FY L AGA + L+LK Y YL + +
Sbjct: 170 AKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSI 229
Query: 60 PSFPGASN-ETLLQKFNTVHRDNPFYEIPQR-RENAFIVKH---YAGKVKYQSGPYTLDN 114
A TL++ + VH I + +EN F + + G V + +DN
Sbjct: 230 NGVDDAQRFHTLVEALDIVH-------ISKEDQENVFAMLAAVLWLGNVSFT----VIDN 278
Query: 115 GGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETL 174
E +VE V DE+++ ++L+ E L+ AL+ + +++ +
Sbjct: 279 ---ENHVEPVA-------DEALST--------AAKLIGCNIEDLMLALSTRKMHVNNDNI 320
Query: 175 VINYRLPE 182
V L +
Sbjct: 321 VQKLTLQQ 328
Score = 36.3 bits (84), Expect = 0.006
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 58 ELPSFPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQS 107
E +FP A++ T K + N + R AF V+HYAG+V Y +
Sbjct: 446 EESTFPNATDLTFANKLKQHLKTNSCFR--GERGGAFTVRHYAGEVTYDT 493
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 71.2 bits (175), Expect = 8e-15
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLN 53
A ++ YLLE+SR+C ERNYH FY L A A +D L + +HYLN
Sbjct: 171 AAIRTYLLERSRVCQISDPERNYHCFYQLCA-APPEDVKKYKLGDPKEFHYLN 222
Score = 49.3 bits (118), Expect = 3e-07
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQS 107
FP +++ET QK +D+ +E P+ AF + HYAG V YQ+
Sbjct: 452 FPKSTHETFAQKLYQTFKDHKRFEKPKLSRTAFTIDHYAGDVTYQT 497
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 70.7 bits (173), Expect = 1e-14
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A+ +YLLEKSRI Q + ERNYH+FY LLAG Q R + L++ E+Y+YLN+
Sbjct: 166 AITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQ 219
Score = 44.5 bits (105), Expect = 9e-06
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQ 106
FP A++ T LQK + H NP Y P+ F +KHYAGKV YQ
Sbjct: 446 FPQATDHTFLQKCHYHHGANPLYSKPKMPLPEFTIKHYAGKVTYQ 490
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 70.1 bits (172), Expect = 2e-14
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 3 VQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELPSF 62
+ +LLEKSR+ +Q ER+YH+FY LL GA+D+ + LK +E Y Y+N L++P
Sbjct: 266 IVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINPKCLDVPGI 325
Query: 63 PGASN-ETLLQKFNT 76
+ E +++ F++
Sbjct: 326 DDVKDFEEVMESFDS 340
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 63 PGASNETLLQKFNTVHRDNPFYEIPQRREN-AFIVKHYAGKVKY 105
PG ++E + NT ++NP Y+ + N F++KH G ++Y
Sbjct: 548 PGGTDEKFVSSCNTNLKNNPKYKPAKVDSNKNFVIKHTIGDIQY 591
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 51.8 bits (124), Expect = 4e-08
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 29/182 (15%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDR---HSLHLKKIESY----HYLN 53
A + +YLLEKSR+ Q GE+N+H+FYY+ AG +++ + + L K Y
Sbjct: 166 ARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRV 225
Query: 54 RIELELPSFPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLD 113
++ F E + Q F + F + + + L+
Sbjct: 226 VQDITSNKFYKDQFEQIEQCFRVI---------------GFTDEEVGSVYRILAA--ILN 268
Query: 114 NGGPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDET 173
G ++EF S + D+S V N + + LL ++ + L ALT+ ET
Sbjct: 269 LG----DIEFGSVASEHQTDKS-RVSNVAALENAASLLCIRSDELQEALTSHCVVTRGET 323
Query: 174 LV 175
+V
Sbjct: 324 IV 325
Score = 41.7 bits (98), Expect = 9e-05
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 7/64 (10%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERNV 121
FP A+++TL++KF + F+ P+R E +F + HYAGKV Y + G E+N
Sbjct: 458 FPQATDQTLVEKFEDNLKSK-FFWRPKRVELSFGIHHYAGKVLYNAS------GFLEKNR 510
Query: 122 EFVP 125
+F+P
Sbjct: 511 DFLP 514
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 767
Score = 43.3 bits (102), Expect = 3e-05
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIES 48
A +Q LLE+SR+ + GE N+ VF LLAG R LHL+++
Sbjct: 167 ASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAE 214
>gnl|CDD|164919 PHA02458, A, protein A*; Reviewed.
Length = 341
Score = 28.7 bits (64), Expect = 1.7
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 8/91 (8%)
Query: 3 VQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELPSF 62
V KY+ +KS I +G N S + + +L KK+ ++L S
Sbjct: 172 VAKYVNKKSDIDMAAKGLGNKE------WNNSLKTKMALLPKKLFRIRMSRNFGMKLLSM 225
Query: 63 PGASNETLLQKFNTVHRDNPFYEIPQRRENA 93
S E L+Q + PF I ++NA
Sbjct: 226 AHLSAECLIQLTQVGYDVTPFNNI--LKQNA 254
>gnl|CDD|222768 PHA00002, A, DNA replication initiation protein gpA.
Length = 515
Score = 28.3 bits (63), Expect = 2.4
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 3 VQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELPSF 62
V KY+ +KS +G N S + + +L KK ++L S
Sbjct: 346 VAKYVNKKSDQDQAAKGLGNKK------WNNSLKTKMALLPKKEFRIRMSRNFGMKLLSM 399
Query: 63 PGASNETLLQKFNTVHRDNPFYEIPQRRENA 93
S E L++ + PF +I ++NA
Sbjct: 400 AHLSAEVLIELTQVGYDVTPFNQI--LKQNA 428
>gnl|CDD|180865 PRK07178, PRK07178, pyruvate carboxylase subunit A; Validated.
Length = 472
Score = 28.1 bits (63), Expect = 2.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 9/29 (31%)
Query: 34 SDQDRHSLHLKKI-ESYH--------YLN 53
S+ DRH+LH+K+ E+Y YLN
Sbjct: 33 SEADRHALHVKRADEAYSIGADPLAGYLN 61
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat
lipoprotein. This protein family occurs in strictly
within a subset of Gram-negative bacterial species with
the proposed PEP-CTERM/exosortase system, analogous to
the LPXTG/sortase system common in Gram-positive
bacteria. This protein occurs in a species if and only
if a transmembrane histidine kinase (TIGR02916) and a
DNA-binding response regulator (TIGR02915) also occur.
The present of tetratricopeptide repeats (TPR) suggests
protein-protein interaction, possibly for the regulation
of PEP-CTERM protein expression, since many PEP-CTERM
proteins in these genomes are preceded by a proposed DNA
binding site for the response regulator.
Length = 899
Score = 28.1 bits (63), Expect = 3.0
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 29 LLAGASDQDRHSLHLKKIE-SYHYLNRIELELPSFPGA 65
LLAGAS L +E +Y YLN+I P+ A
Sbjct: 299 LLAGAS-----EYQLGNLEQAYQYLNQILKYAPNSHQA 331
>gnl|CDD|235394 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1290
Score = 27.8 bits (63), Expect = 4.4
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 64 GASNETLLQKFNTVHRDNPFYEIPQRR 90
G S+E L F +V R NP E+ +RR
Sbjct: 454 GQSSEDL--DFASVQRGNP--EM-ERR 475
>gnl|CDD|234534 TIGR04286, MSEP-CTERM, MSEP-CTERM protein. Members of this protein
family average over 900 residues in length and appear to
have multiple membrane-spanning helices in the
N-terminal half. The extreme C-terminal region consists
of a motif with consensus sequence MSEP, then a
transmembrane alpha helix, then a short region with
several basic residues. This region, hereby dubbed
MSEP-CTERM, resembles other putative sorting signals
associated with the archaeosortase/exosortase protein
family (see TIGR04178). Genes for all members of this
family are found next to a gene for exosortase K.
Length = 920
Score = 27.0 bits (60), Expect = 7.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 50 HYLNRIELELPSFPGASNETLLQKFNTVHR 79
HYLN L L FP ET F +H+
Sbjct: 552 HYLNGNTLSLRVFPFKKEETRKTGFEVIHK 581
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,366,967
Number of extensions: 857117
Number of successful extensions: 677
Number of sequences better than 10.0: 1
Number of HSP's gapped: 671
Number of HSP's successfully gapped: 51
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.2 bits)