RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8603
(184 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 105 bits (264), Expect = 7e-27
Identities = 48/177 (27%), Positives = 78/177 (44%), Gaps = 18/177 (10%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
V YLLEKSRIC QG+ ERNYH+FY L AGAS+ R LHL +++ YLNR
Sbjct: 219 GFVSHYLLEKSRICVQGKEERNYHIFYRLCAGASEDIRERLHLSSPDNFRYLNRGCTRYF 278
Query: 61 SFPGASNETLLQKFNTVHRDNPFYEIP--------QRRENAFIVKHYAGKVKYQSGPYTL 112
+ + L + + + + P R A + + + +
Sbjct: 279 ANKETDKQILQNRKSPEYLKAGSLKDPLLDDHGDFIRMCTAMKKIGL--DDEEKLDLFRV 336
Query: 113 DNG----GPERNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 165
G G N++F S ++ ++T+ + +ELL + ++ L +LT +
Sbjct: 337 VAGVLHLG---NIDFEEAGS-TSGGCNLKNKSTQALEYCAELLGLDQDDLRVSLTTR 389
Score = 56.1 bits (136), Expect = 7e-10
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 10/56 (17%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ----------RRENAFIVKHYAGKVKYQS 107
P S++ + H+D+ IP+ R + FI++H+AG V Y++
Sbjct: 531 LPQPSDQHFTSAVHQKHKDHFRLSIPRKSKLAIHRNIRDDEGFIIRHFAGAVCYET 586
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 93.6 bits (233), Expect = 8e-23
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLN 53
A ++ YLLEKSR+ Q ERNYH+FY L A A+ + +L L +HY
Sbjct: 237 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTK 289
Score = 57.4 bits (139), Expect = 3e-10
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 62 FPGASNETLLQKFNTVHRD-NPFYEIPQRRENAFIVKHYAGKVKYQS 107
P S++T QK H + +E P+ AFI+KH+A KV+YQ
Sbjct: 515 MPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQC 561
Score = 36.6 bits (85), Expect = 0.003
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYR 179
NVEF R S D + + + +L+ V E + L + + ET +
Sbjct: 337 NVEFASRDS----DSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKPIS 392
Query: 180 LPEVL 184
+
Sbjct: 393 KLHAI 397
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 92.7 bits (231), Expect = 2e-22
Identities = 23/53 (43%), Positives = 31/53 (58%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLN 53
A ++ YLLEKSR+ Q ERNYH+FY L A A+ + +L L +HY
Sbjct: 237 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTK 289
Score = 57.3 bits (139), Expect = 3e-10
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 62 FPGASNETLLQKFNTVHRD-NPFYEIPQRRENAFIVKHYAGKVKYQS 107
P S++T QK H + +E P+ AFI+KH+A KV+YQ
Sbjct: 515 MPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQC 561
Score = 34.2 bits (79), Expect = 0.018
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVIN 177
NVEF R S D + + + +L+ V E + L + + ET +
Sbjct: 337 NVEFASRDS----DSCAIPPKHDPLTIFCDLMGVDYEEMAHWLCHRKLATATETYIKP 390
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 92.3 bits (230), Expect = 2e-22
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 58.8 bits (143), Expect = 9e-11
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 62 FPGASNETLLQKFNTVH-RDNPFYEIPQRRENAFIVKHYAGKVKYQS 107
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEI 581
Score = 30.7 bits (70), Expect = 0.31
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVIN 177
N++F E +++ + S + V L AL A + + +
Sbjct: 356 NIKFEKGA-----GEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQH 408
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 92.4 bits (230), Expect = 2e-22
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLN 53
A ++ YLLEKSR Q + E ++H+FY LL GA +Q + L L+ Y +L
Sbjct: 234 ANIETYLLEKSRAIRQAKDECSFHIFYQLLGGAGEQLKADLLLEPCSHYRFLT 286
Score = 58.5 bits (142), Expect = 1e-10
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIP--QRRENAFIVKHYAGKVKYQS 107
FP A++++ ++K +P ++ P R + F V HYAGKV Y++
Sbjct: 515 FPKATDKSFVEKVAQEQGGHPKFQRPRHLRDQADFSVLHYAGKVDYKA 562
Score = 33.9 bits (78), Expect = 0.023
Identities = 6/65 (9%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYR 179
N+ ++ + T+ + + LL + AL + + +
Sbjct: 332 NIALKRERN----TDQATMPDNTAAQKLCRLLGLGVTDFSRALLTPRIKVGRDYVQKAQT 387
Query: 180 LPEVL 184
+
Sbjct: 388 KEQAD 392
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 91.7 bits (228), Expect = 4e-22
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 256 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 309
Score = 57.8 bits (140), Expect = 2e-10
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 62 FPGASNETLLQKFNTVH-RDNPFYEIPQRRENAFIVKHYAGKVKYQS 107
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+
Sbjct: 535 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEI 581
Score = 30.8 bits (70), Expect = 0.29
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVIN 177
N++F E +++ + S + V L AL A + + +
Sbjct: 356 NIKFEKGA-----GEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQH 408
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 91.2 bits (227), Expect = 6e-22
Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 27/186 (14%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKK-IESYHYLNRIELEL 59
A ++ YLLEKSR+ Q ERNYH+FY + + A + + + Y ++N+ L +
Sbjct: 260 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTV 319
Query: 60 PSFPGASN-ETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPE 118
+ + + F+ + + E + K A L G
Sbjct: 320 DNIDDVEEFKLCDEAFDILG-------FTK-EEKQSMFKCTAS---------ILHMG--- 359
Query: 119 RNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINY 178
++F R +E T ++ L + LL AL + E +
Sbjct: 360 -EMKFKQRPR----EEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQ 414
Query: 179 RLPEVL 184
+ +V+
Sbjct: 415 NMNQVV 420
Score = 52.3 bits (126), Expect = 1e-08
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 62 FPGASNETLLQKFNTVHR-DNPFYEIPQ------RRENAFIVKHYAGKVKYQS 107
FP A +++ K H N + P + F + HYAG V Y
Sbjct: 539 FPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSI 591
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 89.5 bits (223), Expect = 2e-21
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKK-IESYHYLNR 54
+ YLLEKSR+ + +GER++H+FY +L G S L L +Y YL +
Sbjct: 177 GKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKK 231
Score = 56.4 bits (137), Expect = 5e-10
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ------RRENAFIVKHYAGKVKYQS 107
++++T L NP + + F +KHYAG V Y
Sbjct: 465 IAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTYDV 516
Score = 36.8 bits (86), Expect = 0.003
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAK 165
N+ F +V V +T+ + + L+ +++L AL +
Sbjct: 278 NITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYR 323
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 87.7 bits (218), Expect = 1e-20
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKK-IESYHYLNRIELEL 59
A ++ YLLEKSR+ Q + ER+YH+FY +L+ + L + Y ++++ E +
Sbjct: 261 ADIETYLLEKSRVIFQLKAERDYHIFYQILSNKKPELLDMLLITNNPYDYAFISQGETTV 320
Query: 60 PS 61
S
Sbjct: 321 AS 322
Score = 54.6 bits (132), Expect = 2e-09
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 62 FPGASNETLLQKFNTVH-RDNPFYEIPQ----RRENAFIVKHYAGKVKYQS 107
FP A++ T K H + ++ P+ + E F + HYAG V Y
Sbjct: 540 FPKATDMTFKAKLFDNHLGKSANFQKPRNIKGKPEAHFSLIHYAGIVDYNI 590
Score = 33.8 bits (78), Expect = 0.024
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLV 175
N++F ++ +E TE + L+ + LL L + +E +
Sbjct: 361 NMKFKLKQR----EEQAEPDGTEEADKSAYLMGLNSADLLKGLCHPRVKVGNEYVT 412
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 86.0 bits (213), Expect = 3e-20
Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 26/185 (14%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A ++ YLLEKSR Q + ER +H+FYYL+AGAS+Q R+ L L+ +Y +L+ + +P
Sbjct: 264 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIP 323
Query: 61 SFPGASN-ETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPER 119
+ + L+ + F E E I++ + L G
Sbjct: 324 AQQDDEMFQETLEAMTIMG----FTE----EEQTSILRVVSS---------VLQLG---- 362
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYR 179
N+ F ++ + ++ + + L+ + ++ + + +
Sbjct: 363 NIVFKKERN----TDQASMPDNTAAQKVCHLMGINVTDFTRSILTPRIKVGRDVVQKAQT 418
Query: 180 LPEVL 184
+
Sbjct: 419 KEQAD 423
Score = 56.4 bits (136), Expect = 6e-10
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIP--QRRENAFIVKHYAGKVKYQS 107
FP A++ + ++K ++ ++ + + F + HYAGKV Y +
Sbjct: 546 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNA 593
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.023
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 9/36 (25%)
Query: 37 DRHSLHLKKIESYHYLNRIELELP-SFPG-ASNETL 70
++ +L KK+++ ++L S P A T+
Sbjct: 18 EKQAL--KKLQA-----SLKLYADDSAPALAIKATM 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.023
Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 37/169 (21%)
Query: 2 VVQKYLLEKSRICSQGRGERNYHVF-YYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
VV K L K + + E + YL ++ ++LH ++ Y+ + +
Sbjct: 407 VVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 61 SFP---------------GASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKV-- 103
P + + F V D F + Q+ + + +G +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF--LEQKIRHDSTAWNASGSILN 522
Query: 104 ------KYQSGPYTLDN-GGPERNV----EFVPRKSA--YHHDESVTVR 139
Y+ PY DN ER V +F+P+ + +R
Sbjct: 523 TLQQLKFYK--PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.26
Identities = 22/141 (15%), Positives = 41/141 (29%), Gaps = 65/141 (46%)
Query: 68 ETLLQKFNTVHRDNPFYEIPQRRE------NA---FIVKHYAG-------------KVKY 105
+ + K N+ +P ++ N +V +G K K
Sbjct: 350 QDYVNKTNS--------HLPAGKQVEISLVNGAKNLVV---SGPPQSLYGLNLTLRKAKA 398
Query: 106 QSG------PYTLDNGGPER----NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKK 155
SG P++ ER + F+P S +H S LL
Sbjct: 399 PSGLDQSRIPFS------ERKLKFSNRFLPVASPFH----------------SHLLVPAS 436
Query: 156 ETLLAALTAKHARASDETLVI 176
+ + L + + + + I
Sbjct: 437 DLINKDLVKNNVSFNAKDIQI 457
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
3udx_A* 3ue0_A* 3ue1_A*
Length = 731
Score = 28.4 bits (64), Expect = 1.4
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 51 YLNRIELELPSFPGASNETLLQKFNTVHRDN-PFYEIPQRRENAFI 95
Y L P ++ L+ ++ + +IP +AF+
Sbjct: 11 YFQSHMLLKPLQVYTADNQLIAEYGGKLSIPVEYKQIPPNFIHAFL 56
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B
2bbn_B
Length = 590
Score = 27.7 bits (62), Expect = 2.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 141 TEVVVLISELLRVKKETLL 159
T V++L E+L L+
Sbjct: 94 TTVIILAGEILAQCAPYLI 112
>1hn0_A Chondroitin ABC lyase I; chondroitinase ABC I, chonroitin
digestion, mechanism; 1.90A {Proteus vulgaris} SCOP:
a.102.3.2 b.18.1.17 b.24.1.1 b.30.5.2
Length = 1021
Score = 27.5 bits (60), Expect = 3.2
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 12/71 (16%)
Query: 48 SYHYLNRIELELPSFPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGK----V 103
SY Y+ F A+ E + + +N Y++ ++ ++ I+
Sbjct: 872 SYEYM--------VFLDATPEKMGEMAQKFRENNGLYQVLRKDKDVHIILDKLSNVTGYA 923
Query: 104 KYQSGPYTLDN 114
YQ
Sbjct: 924 FYQPASIEDKW 934
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 26.3 bits (57), Expect = 4.3
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 49 YHYLNRIELELPSFPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSG 108
+ ++R+E +L LL + + D Q +V+HY KVK +
Sbjct: 25 FLKVSRLEAQLLLERYPECGNLLLRPSGDGADGVSVTTRQMHNGTHVVRHY--KVKREGP 82
Query: 109 PYTLDNGGP 117
Y +D P
Sbjct: 83 KYVIDVEQP 91
>3loi_A Putative uncharacterized protein; beta barrel, unknown function;
2.10A {Branchiostoma belcheri tsingtauense} PDB: 3lzz_A*
Length = 172
Score = 25.8 bits (56), Expect = 8.8
Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 1/74 (1%)
Query: 15 SQGRGERNY-HVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELPSFPGASNETLLQK 73
G+R+ + YYL+ H + + ++ +++ + G+ + ++L
Sbjct: 44 EGFDGKRSVLTMIYYLMQAGQPDPFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSILGN 103
Query: 74 FNTVHRDNPFYEIP 87
+P
Sbjct: 104 PLEHPEARHQVVVP 117
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,772,602
Number of extensions: 156881
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 41
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.5 bits)