RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8603
(184 letters)
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 58.2 bits (140), Expect = 6e-11
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A ++ YLLEKSR+ Q ERNYH+FY L A A+ + +L L +HY +
Sbjct: 175 ANMRTYLLEKSRVVFQAEEERNYHIFYQLCASAALPEFKTLRLGNANYFHYTKQ 228
Score = 43.6 bits (102), Expect = 6e-06
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Query: 62 FPGASNETLLQKFNTVHRD-NPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPERN 120
P S++T QK H + +E P+ AFI+KH+A KV+YQ G E+N
Sbjct: 453 MPKGSDDTWAQKLYNTHLNKCALFEKPRLSNKAFIIKHFADKVEYQC------EGFLEKN 506
Query: 121 VEFVPR 126
+ V
Sbjct: 507 KDTVYE 512
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 56.7 bits (136), Expect = 2e-10
Identities = 27/61 (44%), Positives = 42/61 (68%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNRIELELP 60
A ++ YLLEKSR Q + ER +H+FYYL+AGAS+Q R+ L L+ +Y +L+ + +P
Sbjct: 186 ANIETYLLEKSRAIRQAKDERTFHIFYYLIAGASEQMRNDLLLEGFNNYTFLSNGHVPIP 245
Query: 61 S 61
+
Sbjct: 246 A 246
Score = 42.8 bits (100), Expect = 8e-06
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIPQ--RRENAFIVKHYAGKVKYQS 107
FP A++ + ++K ++ ++ + + + F + HYAGKV Y +
Sbjct: 468 FPKATDTSFVEKLIQEQGNHAKFQKSKQLKDKTEFCILHYAGKVTYNA 515
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 55.9 bits (134), Expect = 3e-10
Identities = 34/183 (18%), Positives = 62/183 (33%), Gaps = 25/183 (13%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIES-YHYLNRIELEL 59
A ++ YLLEKSR+ Q ERNYH+FY + + A + + + Y ++N+ L +
Sbjct: 212 ADIETYLLEKSRVTYQQSAERNYHIFYQICSNAIPELNDVMLVTPDSGLYSFINQGCLTV 271
Query: 60 PSFPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPER 119
+ L + + E + K A +
Sbjct: 272 DNIDDVEEFKLCDEAFDILGFTK-------EEKQSMFKCTASILHMG------------- 311
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYR 179
++F R +E T ++ L + LL AL + E +
Sbjct: 312 EMKFKQR----PREEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKVKVGTEMVTKGQN 367
Query: 180 LPE 182
+ +
Sbjct: 368 MNQ 370
Score = 36.6 bits (84), Expect = 0.001
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 7/54 (12%)
Query: 61 SFPGASNETLLQKFNTVHRDNPFYEI-------PQRRENAFIVKHYAGKVKYQS 107
FP A +++ K H P + F + HYAG V Y
Sbjct: 490 MFPKADDKSFQDKLYQNHMGKNRMFTKPGKPTRPNQGPAHFELHHYAGNVPYSI 543
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 53.9 bits (129), Expect = 2e-09
Identities = 33/182 (18%), Positives = 63/182 (34%), Gaps = 20/182 (10%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDR-HSLHLKKIESYHYLNRIELEL 59
+ YLLEKSR+ + +GER++H+FY +L G S +Y YL +
Sbjct: 169 GKITNYLLEKSRVVGRTQGERSFHIFYQMLKGLSQSKLDELGLTPNAPAYEYLKK----- 223
Query: 60 PSFPGASNETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPER 119
S +F + + + + + I + A +
Sbjct: 224 SGCFDVSTIDDSGEFKIIVKAMETLGLKE-SDQNSIWRILAAILHIG------------- 269
Query: 120 NVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLVINYR 179
N+ F +V V +T+ + + L+ +++L AL +
Sbjct: 270 NITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSISTGVGKRCSVIS 329
Query: 180 LP 181
+P
Sbjct: 330 VP 331
Score = 40.4 bits (94), Expect = 6e-05
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 62 FPGASNETLLQKFNTVHRDNPFYEIP------QRRENAFIVKHYAGKVKY 105
++++T L NP + + F +KHYAG V Y
Sbjct: 457 IAKSTDQTFLDSICKQFEKNPHLQSYVVSKDRSIGDTCFRLKHYAGDVTY 506
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 53.6 bits (128), Expect = 2e-09
Identities = 39/177 (22%), Positives = 64/177 (36%), Gaps = 11/177 (6%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHL-KKIESYHYLNRIELEL 59
A ++ YLLEKSR+ Q ER+YH+FY +++ + L + YHY++ E+ +
Sbjct: 214 ADIETYLLEKSRVTFQLPAERSYHIFYQIMSNKKPELIDMLLITTNPYDYHYVSEGEITV 273
Query: 60 PSFPGASN-ETLLQKFNTVHRDNPFYEIPQRRENAFIVKHYAGKVKYQSGPYTLDNGGPE 118
PS + + E + V HY G +K++ E
Sbjct: 274 PSIDDQEELMATDSAIDILGFSAD--EKTAIYKLTGAVMHY-GNLKFKQKQ---REEQAE 327
Query: 119 RNVEFVPRKSAYHHDESVTVRNTEVVVLISELLRVKKETLLAALTAKHARASDETLV 175
+ V K+AY + L + V E + T S L
Sbjct: 328 PDGTEVADKAAYLMGLNSAELLK---ALCYPRVGVGNEAVTKGETVSEVHNSVGALA 381
Score = 35.1 bits (80), Expect = 0.004
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 62 FPGASNETLLQKFNTVH-RDNPFYEIP----QRRENAFIVKHYAGKVKYQS 107
FP A++ + K H + ++ P + E F + HYAG V Y
Sbjct: 493 FPKATDTSFKNKLYDEHLGKSNNFQKPKPAKGKAEAHFSLVHYAGTVDYNI 543
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 52.4 bits (125), Expect = 6e-09
Identities = 30/54 (55%), Positives = 41/54 (75%)
Query: 1 AVVQKYLLEKSRICSQGRGERNYHVFYYLLAGASDQDRHSLHLKKIESYHYLNR 54
A +Q YLLEKSR+ Q ERNYH+FY LLAGA+ +++ +LHL ES++YLN+
Sbjct: 209 ASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQ 262
Score = 41.6 bits (97), Expect = 2e-05
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 62 FPGASNETLLQKFNTVH-RDNPFYEIPQRRENAFIVKHYAGKVKYQS 107
FP A++ TL+ K ++ + N YE P+ + F V HYAG+V Y+
Sbjct: 488 FPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEI 534
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075
{Jannaschia sp. ccs1 [TaxId: 290400]}
Length = 113
Score = 24.3 bits (53), Expect = 5.5
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
Query: 17 GRGERNYH--VFYYLLA 31
GR ERN + V YY+L
Sbjct: 87 GRSERNKYRAVVYYMLT 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.385
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 664,564
Number of extensions: 29095
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 16
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.1 bits)