Query psy8604
Match_columns 70
No_of_seqs 124 out of 1031
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 23:03:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 99.9 1.3E-24 2.9E-29 167.6 3.4 63 1-63 619-687 (1463)
2 PTZ00014 myosin-A; Provisional 99.9 1.3E-23 2.8E-28 157.8 2.7 63 1-63 652-720 (821)
3 cd01384 MYSc_type_XI Myosin mo 99.9 3.2E-23 6.9E-28 153.3 3.4 63 1-63 556-624 (674)
4 cd01383 MYSc_type_VIII Myosin 99.9 2.6E-23 5.6E-28 153.8 2.9 63 1-63 562-630 (677)
5 cd01378 MYSc_type_I Myosin mot 99.9 2.5E-23 5.5E-28 153.8 2.8 63 1-63 556-624 (674)
6 cd01379 MYSc_type_III Myosin m 99.9 3.6E-23 7.8E-28 152.6 3.3 63 1-63 539-607 (653)
7 cd01387 MYSc_type_XV Myosin mo 99.9 3.8E-23 8.3E-28 152.9 3.4 64 1-64 561-630 (677)
8 cd01377 MYSc_type_II Myosin mo 99.9 3.9E-23 8.5E-28 153.1 3.3 64 1-64 576-645 (693)
9 cd01385 MYSc_type_IX Myosin mo 99.9 4.4E-23 9.5E-28 152.9 3.4 63 1-63 575-643 (692)
10 cd01381 MYSc_type_VII Myosin m 99.9 4.2E-23 9.2E-28 152.6 2.8 63 1-63 553-621 (671)
11 cd01380 MYSc_type_V Myosin mot 99.9 7E-23 1.5E-27 151.7 3.5 64 1-64 575-644 (691)
12 cd00124 MYSc Myosin motor doma 99.9 9.5E-23 2.1E-27 150.6 3.2 63 1-63 563-631 (679)
13 cd01386 MYSc_type_XVIII Myosin 99.9 1E-22 2.2E-27 152.2 3.3 63 1-63 623-713 (767)
14 cd01382 MYSc_type_VI Myosin mo 99.9 9.6E-23 2.1E-27 151.5 2.9 63 1-63 601-669 (717)
15 smart00242 MYSc Myosin. Large 99.9 1.8E-22 4E-27 149.2 3.1 63 1-63 559-627 (677)
16 PF00063 Myosin_head: Myosin h 99.8 4.9E-21 1.1E-25 141.1 0.9 65 1-65 580-650 (689)
17 KOG0161|consensus 99.8 2.5E-19 5.5E-24 142.1 3.6 62 1-62 651-718 (1930)
18 KOG0160|consensus 99.7 8.1E-18 1.8E-22 126.8 0.5 63 1-63 556-624 (862)
19 KOG0162|consensus 99.7 1.6E-17 3.5E-22 123.8 1.3 61 2-62 574-640 (1106)
20 KOG0164|consensus 99.6 1.6E-16 3.5E-21 118.3 3.2 61 1-61 573-639 (1001)
21 KOG0163|consensus 99.4 2.2E-13 4.7E-18 102.6 2.4 60 1-60 654-719 (1259)
22 KOG4229|consensus 63.5 2.7 5.8E-05 34.0 0.3 60 3-62 658-724 (1062)
23 cd01378 MYSc_type_I Myosin mot 61.7 2.5 5.5E-05 32.3 -0.1 25 45-69 577-601 (674)
24 smart00751 BSD domain in trans 56.0 12 0.00025 19.0 1.9 17 45-61 30-46 (51)
25 COG5022 Myosin heavy chain [Cy 54.9 8.6 0.00019 32.2 1.8 25 45-69 640-664 (1463)
26 KOG4229|consensus 52.7 2.3 5E-05 34.4 -1.6 57 3-59 805-867 (1062)
27 cd01377 MYSc_type_II Myosin mo 49.9 12 0.00027 28.8 1.9 25 45-69 597-621 (693)
28 PF03909 BSD: BSD domain ; I 47.2 18 0.00039 19.0 1.8 19 46-64 36-54 (62)
29 cd01384 MYSc_type_XI Myosin mo 46.2 15 0.00033 28.2 1.9 25 45-69 577-601 (674)
30 cd01379 MYSc_type_III Myosin m 44.3 17 0.00037 27.9 1.9 25 45-69 560-584 (653)
31 PTZ00095 40S ribosomal protein 43.9 21 0.00045 23.1 2.0 29 16-44 110-138 (169)
32 cd01382 MYSc_type_VI Myosin mo 42.7 18 0.0004 28.0 1.9 25 45-69 622-646 (717)
33 cd01385 MYSc_type_IX Myosin mo 42.1 19 0.00042 27.8 1.9 25 45-69 596-620 (692)
34 PF10140 YukC: WXG100 protein 42.1 20 0.00044 25.6 1.9 19 45-63 108-126 (359)
35 cd01380 MYSc_type_V Myosin mot 41.3 20 0.00044 27.6 1.9 25 45-69 596-620 (691)
36 cd00124 MYSc Myosin motor doma 41.2 20 0.00044 27.5 1.9 25 45-69 584-608 (679)
37 cd01383 MYSc_type_VIII Myosin 41.0 17 0.00037 28.0 1.4 25 45-69 583-607 (677)
38 cd01387 MYSc_type_XV Myosin mo 40.7 21 0.00045 27.5 1.9 25 45-69 582-606 (677)
39 cd01386 MYSc_type_XVIII Myosin 40.3 20 0.00044 28.1 1.8 21 49-69 670-690 (767)
40 cd01381 MYSc_type_VII Myosin m 39.6 21 0.00045 27.5 1.7 25 45-69 574-598 (671)
41 PTZ00014 myosin-A; Provisional 36.0 23 0.00049 28.1 1.5 25 45-69 673-697 (821)
42 PF02296 Alpha_adaptin_C: Alph 34.6 24 0.00052 21.0 1.2 18 46-63 4-21 (113)
43 smart00242 MYSc Myosin. Large 34.0 28 0.0006 26.8 1.6 25 45-69 580-604 (677)
44 COG4899 Uncharacterized protei 32.9 19 0.00042 23.0 0.6 14 8-21 48-61 (166)
45 KOG4671|consensus 30.8 18 0.00039 24.0 0.2 28 10-38 51-78 (201)
46 PRK09333 30S ribosomal protein 30.7 49 0.0011 21.0 2.1 28 17-44 87-114 (150)
47 PF07962 Swi3: Replication For 29.7 37 0.00081 19.1 1.4 25 45-70 50-74 (83)
48 KOG2690|consensus 29.5 26 0.00056 25.0 0.8 17 44-60 200-216 (331)
49 COG5425 Usg protein, probable 28.8 31 0.00067 19.9 0.9 24 45-69 46-69 (90)
50 COG5132 BUD31 Cell cycle contr 27.5 20 0.00044 22.3 -0.0 15 10-24 101-115 (146)
51 PF10260 SAYSvFN: Uncharacteri 27.5 58 0.0013 18.1 1.9 21 16-36 51-71 (71)
52 PF08120 Toxin_32: Tamulustoxi 27.1 61 0.0013 15.3 1.6 19 9-27 2-20 (35)
53 PF02960 K1: K1 glycoprotein; 26.6 23 0.0005 21.7 0.1 21 11-38 92-112 (130)
54 PF01090 Ribosomal_S19e: Ribos 25.4 22 0.00047 22.3 -0.1 29 16-44 85-113 (139)
55 PF05912 DUF870: Caenorhabditi 23.6 21 0.00045 21.5 -0.5 13 11-23 76-88 (114)
56 PRK10167 hypothetical protein; 21.9 42 0.00091 21.6 0.7 25 46-70 28-52 (169)
57 KOG3030|consensus 21.5 31 0.00068 24.3 0.0 34 5-39 134-168 (317)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.90 E-value=1.3e-24 Score=167.65 Aligned_cols=63 Identities=41% Similarity=0.663 Sum_probs=61.0
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||++|.|+.||..+|+.||||+||+|+| ||.|++|++|++||++|.-
T Consensus 619 m~tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p 687 (1463)
T COG5022 619 MSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSP 687 (1463)
T ss_pred HHHHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcc
Confidence 67899999999999999999999999999999999999999997 9999999999999999876
No 2
>PTZ00014 myosin-A; Provisional
Probab=99.88 E-value=1.3e-23 Score=157.78 Aligned_cols=63 Identities=30% Similarity=0.504 Sum_probs=60.3
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||+.|.|+.||..+|++||+|+||+|++ ||+|++|.+|++||++|..
T Consensus 652 m~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~ 720 (821)
T PTZ00014 652 MSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDL 720 (821)
T ss_pred HHHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCc
Confidence 67899999999999999999999999999999999999999997 9999999999999999864
No 3
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.87 E-value=3.2e-23 Score=153.30 Aligned_cols=63 Identities=33% Similarity=0.568 Sum_probs=60.2
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||+.++|+.||...|.+||+|+||+|++ ||+|++|.+|+.||+.|.-
T Consensus 556 ~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~ 624 (674)
T cd01384 556 METLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAP 624 (674)
T ss_pred HHHHhccCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCc
Confidence 56789999999999999999999999999999999999999997 9999999999999999864
No 4
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.87 E-value=2.6e-23 Score=153.83 Aligned_cols=63 Identities=32% Similarity=0.615 Sum_probs=60.1
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||+.|.|+.||..+|++||+|+|++|++ ||+|++|.+|++||+.+.-
T Consensus 562 ~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~ 630 (677)
T cd01383 562 MQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLL 630 (677)
T ss_pred HHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCc
Confidence 56789999999999999999999999999999999999999997 9999999999999999865
No 5
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.87 E-value=2.5e-23 Score=153.76 Aligned_cols=63 Identities=33% Similarity=0.610 Sum_probs=60.3
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||+.++|+.||..+|++||+|+||+|++ ||+|++|++|++||+.+.-
T Consensus 556 m~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~ 624 (674)
T cd01378 556 VETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSP 624 (674)
T ss_pred HHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCc
Confidence 56789999999999999999999999999999999999999997 9999999999999999865
No 6
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.87 E-value=3.6e-23 Score=152.60 Aligned_cols=63 Identities=32% Similarity=0.626 Sum_probs=60.1
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|.+|+||||||||||+.+.|+.||...|.+||+|+|++|++ ||+|++|++|+.||+.|..
T Consensus 539 ~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~ 607 (653)
T cd01379 539 LSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAY 607 (653)
T ss_pred HHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhcc
Confidence 56789999999999999999999999999999999999999997 9999999999999999864
No 7
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.87 E-value=3.8e-23 Score=152.89 Aligned_cols=64 Identities=34% Similarity=0.651 Sum_probs=60.7
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGML 64 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~~ 64 (70)
|+.|++|+||||||||||+.+.|+.||..+|++||+|+|++|++ ||+|++|++|++||+.|...
T Consensus 561 ~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~ 630 (677)
T cd01387 561 VEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVAL 630 (677)
T ss_pred HHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcc
Confidence 56789999999999999999999999999999999999999997 99999999999999999654
No 8
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.87 E-value=3.9e-23 Score=153.11 Aligned_cols=64 Identities=34% Similarity=0.535 Sum_probs=60.6
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGML 64 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~~ 64 (70)
|++|++|+||||||||||+.+.|+.||...|.+||+|+||+|++ ||.|++|++|++||+.|...
T Consensus 576 ~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~rY~~L~~~ 645 (693)
T cd01377 576 MTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQRYEILAPN 645 (693)
T ss_pred HHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHHHHHhCcc
Confidence 56789999999999999999999999999999999999999997 99999999999999998653
No 9
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.87 E-value=4.4e-23 Score=152.88 Aligned_cols=63 Identities=52% Similarity=0.748 Sum_probs=60.0
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|+.|++|+||||||||||+.+.|+.||..+|.+||+|+|++|++ ||.|++|++|++||+.+..
T Consensus 575 ~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~ 643 (692)
T cd01385 575 METLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLP 643 (692)
T ss_pred HHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCc
Confidence 56789999999999999999999999999999999999999997 9999999999999999863
No 10
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.87 E-value=4.2e-23 Score=152.55 Aligned_cols=63 Identities=41% Similarity=0.654 Sum_probs=60.3
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||+.+.|+.||..+|.+||+|+||+|++ ||+|++|.+|+.||+.+.-
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~ 621 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVP 621 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCc
Confidence 56789999999999999999999999999999999999999997 9999999999999999875
No 11
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.87 E-value=7e-23 Score=151.75 Aligned_cols=64 Identities=39% Similarity=0.618 Sum_probs=60.7
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGML 64 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~~ 64 (70)
|++|++|+||||||||||+.+.|+.||..+|++||+|+|++|++ ||+|++|++|+.||+.|.-.
T Consensus 575 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~ry~~L~~~ 644 (691)
T cd01380 575 MSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFAQRYRVLVPS 644 (691)
T ss_pred HHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHHHHHHHhCcc
Confidence 56789999999999999999999999999999999999999997 99999999999999998754
No 12
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.86 E-value=9.5e-23 Score=150.63 Aligned_cols=63 Identities=44% Similarity=0.709 Sum_probs=60.0
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||+.+.|+.||...|.+||+|+|++|++ ||.|++|++|++||+.+.-
T Consensus 563 ~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~ 631 (679)
T cd00124 563 MATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAP 631 (679)
T ss_pred HHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCc
Confidence 56789999999999999999999999999999999999999997 9999999999999998864
No 13
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.86 E-value=1e-22 Score=152.19 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=58.7
Q ss_pred CCCCCCCCCceeeeecCCCCCC----------------------CCCccHHHHHHHHHHhCccccC------CCCCCCHH
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKI----------------------PNNFDIDTVLRQLRYTGMLKTD------IPNNFDID 52 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~----------------------p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~ 52 (70)
|++|++|+||||||||||+.|. |+.||...|++||+|+||+|++ ||+|++|.
T Consensus 623 m~~L~~t~phfIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~ 702 (767)
T cd01386 623 IDTLRRSGLHFVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLG 702 (767)
T ss_pred HHHHhccCCeeEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHH
Confidence 5679999999999999999874 7899999999999999999997 99999999
Q ss_pred HHHHHHhhhhh
Q psy8604 53 TVQRQLRYTGM 63 (70)
Q Consensus 53 ~F~~ry~~~~~ 63 (70)
+|+.||+.|..
T Consensus 703 ~F~~RY~~L~~ 713 (767)
T cd01386 703 EFVRRFGLLAE 713 (767)
T ss_pred HHHHHHHhhCh
Confidence 99999998864
No 14
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.86 E-value=9.6e-23 Score=151.50 Aligned_cols=63 Identities=24% Similarity=0.414 Sum_probs=59.8
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||+.+.|+.||..+|++||+|+||+|++ ||+|++|.+|+.||+.+..
T Consensus 601 m~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~ 669 (717)
T cd01382 601 LEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMVSVLDLMQGGFPSRASFHELYNMYKKYMP 669 (717)
T ss_pred HHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhcchHHHHHHHHccCchhhhHHHHHHHHHHhCC
Confidence 56799999999999999999999999999999999999999997 9999999999999997754
No 15
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.85 E-value=1.8e-22 Score=149.17 Aligned_cols=63 Identities=46% Similarity=0.715 Sum_probs=60.1
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|+.|++|+||||||||||+.+.|+.||...|.+||+|+|++|++ ||+|++|++|+.||+.+.-
T Consensus 559 ~~~l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~ 627 (677)
T smart00242 559 MDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLP 627 (677)
T ss_pred HHHHhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCc
Confidence 56789999999999999999999999999999999999999997 9999999999999998865
No 16
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.80 E-value=4.9e-21 Score=141.13 Aligned_cols=65 Identities=45% Similarity=0.709 Sum_probs=54.9
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGMLK 65 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~~~ 65 (70)
|+.|++|+||||||||||+.+.|+.||..+|.+||+++|++|++ ||.|++|.+|++||+.|.-..
T Consensus 580 ~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~~~eF~~RY~~L~~~~ 650 (689)
T PF00063_consen 580 MDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLTFDEFLRRYKCLLPSS 650 (689)
T ss_dssp HHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEEHHHHHHHHGGGSTTC
T ss_pred HhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecchhhhhhhhceechhh
Confidence 45789999999999999999999999999999999999999996 999999999999999987643
No 17
>KOG0161|consensus
Probab=99.76 E-value=2.5e-19 Score=142.14 Aligned_cols=62 Identities=34% Similarity=0.605 Sum_probs=58.9
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTG 62 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~ 62 (70)
|++|++|+|||||||.||..|.||.+|..+|+.||+|.||+|++ ||+|++|.+|.+||..+.
T Consensus 651 m~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~lla 718 (1930)
T KOG0161|consen 651 MTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYELLA 718 (1930)
T ss_pred HHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHhhh
Confidence 67899999999999999999999999999999999999999997 999999999999999443
No 18
>KOG0160|consensus
Probab=99.67 E-value=8.1e-18 Score=126.79 Aligned_cols=63 Identities=37% Similarity=0.559 Sum_probs=60.3
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~~ 63 (70)
|++|++|+||||||||||..+.|..||..+|.+||+|+|+||++ ||.|.+|.+|+.||..+.-
T Consensus 556 m~~l~~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~ 624 (862)
T KOG0160|consen 556 METLNSTPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP 624 (862)
T ss_pred HHHhcCCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc
Confidence 56899999999999999999999999999999999999999997 9999999999999998865
No 19
>KOG0162|consensus
Probab=99.66 E-value=1.6e-17 Score=123.85 Aligned_cols=61 Identities=28% Similarity=0.506 Sum_probs=57.7
Q ss_pred CCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhh
Q psy8604 2 NTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTG 62 (70)
Q Consensus 2 ~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~ 62 (70)
++|.+|.||||||||||++|.|+.||...|++|+.|+|+-|++ |.+|..|+.|++||.+|.
T Consensus 574 eTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyails 640 (1106)
T KOG0162|consen 574 ETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILS 640 (1106)
T ss_pred HHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecC
Confidence 4688999999999999999999999999999999999999997 999999999999998764
No 20
>KOG0164|consensus
Probab=99.63 E-value=1.6e-16 Score=118.29 Aligned_cols=61 Identities=28% Similarity=0.538 Sum_probs=57.9
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHhhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYT 61 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~ 61 (70)
|++|.+.+|+||||||||+.|.|+.||..++..|.+++|++|++ |..|.+|+.|+.|||.+
T Consensus 573 v~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi 639 (1001)
T KOG0164|consen 573 VKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMI 639 (1001)
T ss_pred HHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhh
Confidence 45788999999999999999999999999999999999999997 99999999999999975
No 21
>KOG0163|consensus
Probab=99.37 E-value=2.2e-13 Score=102.56 Aligned_cols=60 Identities=27% Similarity=0.533 Sum_probs=54.1
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCcccc------CCCCCCCHHHHHHHHhh
Q psy8604 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT------DIPNNFDIDTVQRQLRY 60 (70)
Q Consensus 1 m~~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~------~~p~r~~~~~F~~ry~~ 60 (70)
|.+|++|..|||||||||....+..||...++.||+|+|+... +||.|.+|.+...-|+-
T Consensus 654 ldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCsGm~SVL~LMq~GyPSR~~F~dLYamYkk 719 (1259)
T KOG0163|consen 654 LDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCSGMISVLELMQHGYPSRTSFADLYAMYKK 719 (1259)
T ss_pred HHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHh
Confidence 4578999999999999999999999999999999999997433 49999999999888864
No 22
>KOG4229|consensus
Probab=63.55 E-value=2.7 Score=34.02 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=46.2
Q ss_pred CCCCCCCceeeeecCCCCCCCCCccHH-HHHHHHHHhCccccC------CCCCCCHHHHHHHHhhhh
Q psy8604 3 TLNQANPFFIRCIKSNTMKIPNNFDID-TVLRQLRYTGMLKTD------IPNNFDIDTVQRQLRYTG 62 (70)
Q Consensus 3 ~L~~t~~hfIrCIkPN~~k~p~~fd~~-~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~~~~ 62 (70)
.|.....|+.|||++|+.-.+..++.. .+..++...|..++- +..++.+.+++..++...
T Consensus 658 ~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1062)
T KOG4229|consen 658 ALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSE 724 (1062)
T ss_pred hcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhccccccc
Confidence 466677999999999999999888877 788888888877764 455677777666655443
No 23
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=61.70 E-value=2.5 Score=32.32 Aligned_cols=25 Identities=44% Similarity=0.790 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 577 ~p~~Fd~~~V~~QLr~~GvLE~iri 601 (674)
T cd01378 577 SPNDFDESRVLHQVKYLGLLENVRV 601 (674)
T ss_pred CchhcCHHHHHHHHHhcChHHHHHH
Confidence 4677999999999999999999997
No 24
>smart00751 BSD domain in transcription factors and synapse-associated proteins.
Probab=56.03 E-value=12 Score=19.04 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=14.4
Q ss_pred CCCCCCHHHHHHHHhhh
Q psy8604 45 IPNNFDIDTVQRQLRYT 61 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~ 61 (70)
=|..++.++|+.||=+.
T Consensus 30 VP~~~se~~FW~ryF~~ 46 (51)
T smart00751 30 VPKVLSEEEFWARYFYL 46 (51)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 58999999999998554
No 25
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=54.92 E-value=8.6 Score=32.22 Aligned_cols=25 Identities=44% Similarity=0.626 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|+.++-...+.+.|++|++||+||
T Consensus 640 ~p~~fD~~mVL~QLr~~GVlE~IRI 664 (1463)
T COG5022 640 SPWTFDNQMVLSQLRCCGVLETIRI 664 (1463)
T ss_pred CccccchHHHHHHHHhcchhhheee
Confidence 5778889999999999999999998
No 26
>KOG4229|consensus
Probab=52.67 E-value=2.3 Score=34.35 Aligned_cols=57 Identities=32% Similarity=0.374 Sum_probs=44.1
Q ss_pred CCCCCCCceeeeecCCCCCCCCCccHHHHHHHHHHhCccccC------CCCCCCHHHHHHHHh
Q psy8604 3 TLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKTD------IPNNFDIDTVQRQLR 59 (70)
Q Consensus 3 ~L~~t~~hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~g~le~~------~p~r~~~~~F~~ry~ 59 (70)
.+....+.|++|++-|..+....|+...|..|+.+.|+.+.. +...++..++...++
T Consensus 805 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~ 867 (1062)
T KOG4229|consen 805 YLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSR 867 (1062)
T ss_pred hhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhcccccc
Confidence 345567889999999988888899999999999999976664 555566655555444
No 27
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=49.89 E-value=12 Score=28.79 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-+...++.|++|++|++||
T Consensus 597 ~p~~Fd~~~V~~QLr~~GvlEtvri 621 (693)
T cd01377 597 KPGKLDAHLVLDQLRCNGVLEGIRI 621 (693)
T ss_pred CCCccCHHHHHHHHHhcchHHHHHH
Confidence 4778999999999999999999997
No 28
>PF03909 BSD: BSD domain ; InterPro: IPR005607 The BSD domain is an about 60-residue long domain named after the BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins in which it is found. Additionally, it is also found in several hypothetical proteins. The BSD domain occurs in one or two copies in a variety of species ranging from primal protozoan to human. It can be found associated with other domains such as the BTB domain (see PDOC50097 from PROSITEDOC) or the U-box in multidomain proteins. The function of the BSD domain is yet unknown []. Secondary structure prediction indicates the presence of three predicted alpha helices, which probably form a three-helical bundle in small domains. The third predicted helix contains neighbouring phenylalanine and tryptophan residues - less common amino acids that are invariant in all the BSD domains identified and that are the most striking sequence features of the domain []. Some proteins known to contain one or two BSD domains are listed below: Mammalian TFIIH basal transcription factor complex p62 subunit (GTF2H1). Yeast RNA polymerase II transcription factor B 73 kDa subunit (TFB1), the homologue of BTF2. Yeast DOS2 protein. It is involved in single-copy DNA replication and ubiquitination. Drosophila synapse-associated protein SAP47. Mammalian SYAP1. Various Arabidopsis thaliana (Mouse-ear cress) hypothetical proteins.; PDB: 1X3A_A 1PFJ_A 2RNR_B 2DII_A.
Probab=47.15 E-value=18 Score=19.00 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHhhhhhh
Q psy8604 46 PNNFDIDTVQRQLRYTGML 64 (70)
Q Consensus 46 p~r~~~~~F~~ry~~~~~~ 64 (70)
|..++.++|+.||-+....
T Consensus 36 P~~~~e~~FW~rYf~~~~~ 54 (62)
T PF03909_consen 36 PSKMSEEEFWKRYFYRLHK 54 (62)
T ss_dssp TTTS-HHHHHHHHHCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999766543
No 29
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=46.20 E-value=15 Score=28.23 Aligned_cols=25 Identities=36% Similarity=0.632 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 577 ~p~~fd~~~V~~QLr~~GvlE~iri 601 (674)
T cd01384 577 KPGIFENENVLQQLRCGGVLEAIRI 601 (674)
T ss_pred CCCccCHHHHHHHHHHcchHHHHHH
Confidence 4678999999999999999999997
No 30
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=44.33 E-value=17 Score=27.91 Aligned_cols=25 Identities=48% Similarity=0.810 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 560 ~~~~fd~~~V~~QLr~~GvlE~iri 584 (653)
T cd01379 560 QAKKFDAEKVLKQLRYTGILETARI 584 (653)
T ss_pred CccccCHHHHHHHHHHcchHHHHHH
Confidence 4778999999999999999999987
No 31
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=43.90 E-value=21 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=20.7
Q ss_pred cCCCCCCCCCccHHHHHHHHHHhCccccC
Q psy8604 16 KSNTMKIPNNFDIDTVLRQLRYTGMLKTD 44 (70)
Q Consensus 16 kPN~~k~p~~fd~~~v~~Ql~~~g~le~~ 44 (70)
+|+.....+---...+++||...|++|..
T Consensus 110 ~P~h~~~aSg~iiR~~LQqLE~~glVek~ 138 (169)
T PTZ00095 110 APNHTVRASGKILRWICQQLEKLGLVEQG 138 (169)
T ss_pred CCCcccCCchHHHHHHHHHHHHCCCEEec
Confidence 45554445545567799999999999854
No 32
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=42.72 E-value=18 Score=27.99 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 622 ~p~~fd~~~V~~QLr~~GvLE~vri 646 (717)
T cd01382 622 VSHQFEGAQILSQLQCSGMVSVLDL 646 (717)
T ss_pred CCCCCChHHHHHHHHhcchHHHHHH
Confidence 4678999999999999999999997
No 33
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=42.11 E-value=19 Score=27.75 Aligned_cols=25 Identities=68% Similarity=0.919 Sum_probs=22.9
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 596 ~p~~Fd~~~V~~QLr~~GvlE~iri 620 (692)
T cd01385 596 IENCFDDELVLRQLRYTGMLETVRI 620 (692)
T ss_pred CcCccCHHHHHHHHHhhchHHHHHH
Confidence 4678999999999999999999987
No 34
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=42.09 E-value=20 Score=25.65 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=12.3
Q ss_pred CCCCCCHHHHHHHHhhhhh
Q psy8604 45 IPNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~ 63 (70)
-|..++-++|+.+||.+.+
T Consensus 108 ~P~~~~ee~fl~qyKali~ 126 (359)
T PF10140_consen 108 PPYELDEEDFLKQYKALII 126 (359)
T ss_dssp S-----HHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 4677899999999999876
No 35
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=41.28 E-value=20 Score=27.61 Aligned_cols=25 Identities=40% Similarity=0.608 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 596 ~~~~fd~~~V~~QLr~~GvlE~iri 620 (691)
T cd01380 596 KPFKFEPKRVLQQLRACGVLETIRI 620 (691)
T ss_pred CcCccCHHHHHHHHHHhchHHHHHH
Confidence 4667999999999999999999997
No 36
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=41.24 E-value=20 Score=27.46 Aligned_cols=25 Identities=52% Similarity=0.856 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 584 ~p~~fd~~~V~~QLr~~GvlE~iri 608 (679)
T cd00124 584 KPNAFDSGKVLQQLRYLGILETIRI 608 (679)
T ss_pred CCCccChHHHHHHHHHhchHHHHHH
Confidence 4677999999999999999999987
No 37
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=40.96 E-value=17 Score=28.03 Aligned_cols=25 Identities=36% Similarity=0.630 Sum_probs=22.8
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 583 ~p~~fd~~~V~~QLr~~GvlE~iri 607 (677)
T cd01383 583 LPGIYEQGLVLQQLRCCGVLEVVRI 607 (677)
T ss_pred CcCccchhhhHHHhhhccHHHHHHH
Confidence 4678999999999999999999997
No 38
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=40.70 E-value=21 Score=27.54 Aligned_cols=25 Identities=52% Similarity=0.798 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 582 ~~~~Fd~~~V~~QLr~~GvlE~vri 606 (677)
T cd01387 582 EPGLFEPDVVMAQLRYSGVLETVRI 606 (677)
T ss_pred CccccChHHHHHHHHHhchHHHHHH
Confidence 4677999999999999999999997
No 39
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=40.27 E-value=20 Score=28.08 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=17.7
Q ss_pred CCHHHHHHHHhhhhhhhhhcc
Q psy8604 49 FDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 49 ~~~~~F~~ry~~~~~~~~~~~ 69 (70)
++-...+++.|++|++|++||
T Consensus 670 fd~~~V~~QLr~~GvlE~iri 690 (767)
T cd01386 670 LDIPLLRSQLRGSQILEAARL 690 (767)
T ss_pred cCHHHHHHHHHhcccHHHHHH
Confidence 444568899999999999997
No 40
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=39.55 E-value=21 Score=27.53 Aligned_cols=25 Identities=48% Similarity=0.794 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 574 ~~~~fd~~~V~~QLr~~Gvle~iri 598 (671)
T cd01381 574 EPMVFDRELCVRQLRYSGMMETIRI 598 (671)
T ss_pred ccCccChHHHHHHHHhcchHHHHHH
Confidence 3667999999999999999999997
No 41
>PTZ00014 myosin-A; Provisional
Probab=36.03 E-value=23 Score=28.06 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.7
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-...+++.|++|++|++||
T Consensus 673 ~p~~fd~~~V~~QLr~~GvLE~iri 697 (821)
T PTZ00014 673 KPLDWNSSKVLIQLHSLSILEALQL 697 (821)
T ss_pred CccccchHhHHHHhhhhhHHHHHHH
Confidence 4677999999999999999999997
No 42
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. AP adaptor alpha-adaptin can be divided into a trunk domain and the C-terminal appendage domain (or ear domain), separated by a linker region. The C-terminal appendage domain regulates translocation of endocytic accessory proteins to the bud site []. This entry represents a subdomain of the appendage (ear) domain of alpha-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1KYF_A 1B9K_A 1QTS_A 1KYU_A 2VJ0_A 1KY6_A 1W80_A 3HS8_A 1KYD_A 1QTP_A ....
Probab=34.57 E-value=24 Score=21.00 Aligned_cols=18 Identities=11% Similarity=0.272 Sum_probs=11.6
Q ss_pred CCCCCHHHHHHHHhhhhh
Q psy8604 46 PNNFDIDTVQRQLRYTGM 63 (70)
Q Consensus 46 p~r~~~~~F~~ry~~~~~ 63 (70)
|..++-++|++|.|.+|-
T Consensus 4 p~~l~~~~Ff~RWkql~~ 21 (113)
T PF02296_consen 4 PTTLSSEDFFQRWKQLGG 21 (113)
T ss_dssp E----HHHHHHHHTTT-S
T ss_pred CccCCHHHHHHHHHhccC
Confidence 567888999999999973
No 43
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=34.01 E-value=28 Score=26.78 Aligned_cols=25 Identities=48% Similarity=0.806 Sum_probs=22.5
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
-|..+.-....++.|++|++|++||
T Consensus 580 ~~~~Fd~~~V~~QLr~~Gvle~iri 604 (677)
T smart00242 580 KPGDFDSSLVLHQLRYLGVLETIRI 604 (677)
T ss_pred CcccccHHHHHHHHHhcccHHHHHH
Confidence 3677999999999999999999987
No 44
>COG4899 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.91 E-value=19 Score=22.98 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=10.6
Q ss_pred CCceeeeecCCCCC
Q psy8604 8 NPFFIRCIKSNTMK 21 (70)
Q Consensus 8 ~~hfIrCIkPN~~k 21 (70)
.-|||||+-|=.-+
T Consensus 48 ~r~FIr~~lpIPi~ 61 (166)
T COG4899 48 KRHFIRSNLPIPID 61 (166)
T ss_pred cceeeeecccceec
Confidence 45999999986533
No 45
>KOG4671|consensus
Probab=30.83 E-value=18 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=17.7
Q ss_pred ceeeeecCCCCCCCCCccHHHHHHHHHHh
Q psy8604 10 FFIRCIKSNTMKIPNNFDIDTVLRQLRYT 38 (70)
Q Consensus 10 hfIrCIkPN~~k~p~~fd~~~v~~Ql~~~ 38 (70)
=|.+|.+||+ ..|..||.....+-++..
T Consensus 51 Lw~~C~~~~~-~~~~pfd~~~C~s~~~~~ 78 (201)
T KOG4671|consen 51 LWWSCRKPAS-THAAPFDPGGCQSTLEVD 78 (201)
T ss_pred eeeeecCcCC-cCCCCcCCccCcChhhcc
Confidence 5789999999 555566655444443333
No 46
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=30.66 E-value=49 Score=21.02 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=18.9
Q ss_pred CCCCCCCCCccHHHHHHHHHHhCccccC
Q psy8604 17 SNTMKIPNNFDIDTVLRQLRYTGMLKTD 44 (70)
Q Consensus 17 PN~~k~p~~fd~~~v~~Ql~~~g~le~~ 44 (70)
|+.....+----..+++||...|++|..
T Consensus 87 P~h~~~~sg~iiR~~LqqLE~~glVek~ 114 (150)
T PRK09333 87 PEHFVKGSGSIIRKILQQLEKAGLVEKT 114 (150)
T ss_pred CCccccCccHHHHHHHHHHHHCCCeeeC
Confidence 4443333333456789999999999854
No 47
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=29.75 E-value=37 Score=19.12 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.2
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhccC
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRYY 70 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~~ 70 (70)
|| ..+|++|+++-+-+|=...|+.|
T Consensus 50 fP-k~~F~d~i~~vE~LG~~k~v~~~ 74 (83)
T PF07962_consen 50 FP-KASFEDFIERVEKLGKKKRVRNY 74 (83)
T ss_pred CC-CCCHHHHHHHHHHHcCCHHHHHH
Confidence 45 57899999999999987777654
No 48
>KOG2690|consensus
Probab=29.50 E-value=26 Score=25.00 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHhh
Q psy8604 44 DIPNNFDIDTVQRQLRY 60 (70)
Q Consensus 44 ~~p~r~~~~~F~~ry~~ 60 (70)
+-|..++|.+|+.||=|
T Consensus 200 lVP~~VshetFW~RYFy 216 (331)
T KOG2690|consen 200 LVPSEVSHETFWHRYFY 216 (331)
T ss_pred hCcccccHHHHHHHHHH
Confidence 46999999999999854
No 49
>COG5425 Usg protein, probable subunit of phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=28.79 E-value=31 Score=19.92 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHHHHhhhhhhhhhcc
Q psy8604 45 IPNNFDIDTVQRQLRYTGMLKTVRY 69 (70)
Q Consensus 45 ~p~r~~~~~F~~ry~~~~~~~~~~~ 69 (70)
||.-..|-+|+++ +.=|.+++||+
T Consensus 46 FP~l~~Fl~fWq~-~ldGpLHsVry 69 (90)
T COG5425 46 FPVLKGFLDFWQR-ELDGPLHSVRY 69 (90)
T ss_pred cHHHHHHHHHHHH-hccCCceeeeh
Confidence 7788888888876 77788888874
No 50
>COG5132 BUD31 Cell cycle control protein, G10 family [Transcription / Cell division and chromosome partitioning]
Probab=27.53 E-value=20 Score=22.27 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=12.0
Q ss_pred ceeeeecCCCCCCCC
Q psy8604 10 FFIRCIKSNTMKIPN 24 (70)
Q Consensus 10 hfIrCIkPN~~k~p~ 24 (70)
..+|||-|++++-.+
T Consensus 101 CCLRCIQ~~esk~Gs 115 (146)
T COG5132 101 CCLRCIQPIESKHGS 115 (146)
T ss_pred hhHhhcCcccccCCC
Confidence 357999999998654
No 51
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=27.51 E-value=58 Score=18.10 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=17.4
Q ss_pred cCCCCCCCCCccHHHHHHHHH
Q psy8604 16 KSNTMKIPNNFDIDTVLRQLR 36 (70)
Q Consensus 16 kPN~~k~p~~fd~~~v~~Ql~ 36 (70)
+||-+..||.++.+.+.+|+|
T Consensus 51 N~~~~~i~Gtl~aE~~ereir 71 (71)
T PF10260_consen 51 NKGCERIPGTLTAEQFEREIR 71 (71)
T ss_pred CCCccccCCCCCHHHHHHhhC
Confidence 677788889999888888875
No 52
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=27.13 E-value=61 Score=15.27 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=13.8
Q ss_pred CceeeeecCCCCCCCCCcc
Q psy8604 9 PFFIRCIKSNTMKIPNNFD 27 (70)
Q Consensus 9 ~hfIrCIkPN~~k~p~~fd 27 (70)
+|||-|---.....|+.+.
T Consensus 2 chfvicttdcrrnspgtyg 20 (35)
T PF08120_consen 2 CHFVICTTDCRRNSPGTYG 20 (35)
T ss_pred ceEEEeccccccCCCCchh
Confidence 6888887766667777654
No 53
>PF02960 K1: K1 glycoprotein; InterPro: IPR004121 Current genotyping systems for Human herpesvirus 8 (HHV-8) are based on the highly variable gene encoding the K1 glycoprotein []. This entry represents the C-terminal region of the K1 glycoprotein.
Probab=26.56 E-value=23 Score=21.71 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=15.6
Q ss_pred eeeeecCCCCCCCCCccHHHHHHHHHHh
Q psy8604 11 FIRCIKSNTMKIPNNFDIDTVLRQLRYT 38 (70)
Q Consensus 11 fIrCIkPN~~k~p~~fd~~~v~~Ql~~~ 38 (70)
|-.|.|+.++. +.|.+||+-.
T Consensus 92 fahcqkq~dSn-------kTvpqql~dy 112 (130)
T PF02960_consen 92 FAHCQKQRDSN-------KTVPQQLRDY 112 (130)
T ss_pred HHHhccccccc-------ccchHHHHhh
Confidence 44799998875 6688888753
No 54
>PF01090 Ribosomal_S19e: Ribosomal protein S19e; InterPro: IPR001266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes a number of eukaryotic and archaebacterial ribosomal proteins; mammalian S19, Drosophila S19, Ascaris lumbricoides S19g (ALEP-1) and S19s, yeast YS16 (RP55A and RP55B), Aspergillus S16 and Haloarcula marismortui HS12.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZ6_S 3U5G_T 3U5C_T 3O30_M 3O2Z_M 3IZB_S 2XZN_T 2XZM_T 2V7F_A.
Probab=25.42 E-value=22 Score=22.30 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=17.7
Q ss_pred cCCCCCCCCCccHHHHHHHHHHhCccccC
Q psy8604 16 KSNTMKIPNNFDIDTVLRQLRYTGMLKTD 44 (70)
Q Consensus 16 kPN~~k~p~~fd~~~v~~Ql~~~g~le~~ 44 (70)
+|+.....+----..+++||...|++|..
T Consensus 85 ~p~h~~~asg~iiR~~LqqLE~~glv~k~ 113 (139)
T PF01090_consen 85 RPSHFVKASGSIIRKILQQLEKAGLVEKD 113 (139)
T ss_dssp SCCEE--CHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCCCCcHHHHHHHHHHHHCCCEEec
Confidence 34333333333345688999999998865
No 55
>PF05912 DUF870: Caenorhabditis elegans protein of unknown function (DUF870); InterPro: IPR008588 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=23.62 E-value=21 Score=21.46 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=9.6
Q ss_pred eeeeecCCCCCCC
Q psy8604 11 FIRCIKSNTMKIP 23 (70)
Q Consensus 11 fIrCIkPN~~k~p 23 (70)
=+|||+|+.+..-
T Consensus 76 ~~~c~~p~~~~~v 88 (114)
T PF05912_consen 76 ETRCLKPKETVDV 88 (114)
T ss_pred CEEEecCCCcEEC
Confidence 4699999975543
No 56
>PRK10167 hypothetical protein; Provisional
Probab=21.88 E-value=42 Score=21.55 Aligned_cols=25 Identities=4% Similarity=-0.036 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHhhhhhhhhhccC
Q psy8604 46 PNNFDIDTVQRQLRYTGMLKTVRYY 70 (70)
Q Consensus 46 p~r~~~~~F~~ry~~~~~~~~~~~~ 70 (70)
+.+-...+|.+|+|++-|+++-.+|
T Consensus 28 ~t~~~Lv~Fhsr~KyllMaHsq~~y 52 (169)
T PRK10167 28 LTRGALLDYHSRYKLVFLAHSQPEY 52 (169)
T ss_pred CCHHHHHHHHHhhhHHHHhCCHHHH
Confidence 3344466899999999998765443
No 57
>KOG3030|consensus
Probab=21.46 E-value=31 Score=24.32 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=23.4
Q ss_pred CCCCCcee-eeecCCCCCCCCCccHHHHHHHHHHhC
Q psy8604 5 NQANPFFI-RCIKSNTMKIPNNFDIDTVLRQLRYTG 39 (70)
Q Consensus 5 ~~t~~hfI-rCIkPN~~k~p~~fd~~~v~~Ql~~~g 39 (70)
..-.|||. +| +||-++.-..-|.....++..|.|
T Consensus 134 GRlRP~Fl~vC-~P~~~~~~~~~~~~~yi~~~~Ctg 168 (317)
T KOG3030|consen 134 GRLRPHFLDVC-QPDGTDGSTCSDSNLYIEDFICTG 168 (317)
T ss_pred cCCCCCeeccc-cCCccCCCCCcccccccccceeCC
Confidence 34568887 66 888876444445566777888888
Done!