RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8604
(70 letters)
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins. Myosin
IX is a processive single-headed motor, which might play
a role in signalling. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 692
Score = 77.2 bits (190), Expect = 1e-18
Identities = 31/43 (72%), Positives = 34/43 (79%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TL +A PFFIRCIKSN KI N FD + VLRQLRYTGML+T
Sbjct: 575 METLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLET 617
>gnl|CDD|214580 smart00242, MYSc, Myosin. Large ATPases. ATPase; molecular motor.
Muscle contraction consists of a cyclical interaction
between myosin and actin. The core of the myosin
structure is similar in fold to that of kinesin.
Length = 677
Score = 71.4 bits (176), Expect = 1e-16
Identities = 25/43 (58%), Positives = 29/43 (67%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M+TLN NP FIRCIK N K P +FD VL QLRY G+L+
Sbjct: 559 MDTLNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLEN 601
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins.
Myosins in this group have been associated with
functions in sensory systems such as vision and hearing.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 671
Score = 67.9 bits (166), Expect = 2e-15
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TL+ PFFIRCIK N K P FD + +RQLRY+GM++T
Sbjct: 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMET 595
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 679
Score = 67.3 bits (165), Expect = 4e-15
Identities = 26/43 (60%), Positives = 29/43 (67%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TLN P FIRCIK N K PN FD VL+QLRY G+L+T
Sbjct: 563 MATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILET 605
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 57.4 bits (139), Expect = 1e-11
Identities = 23/43 (53%), Positives = 27/43 (62%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M+TLN P +IRCIK N K P FD VL QLR G+L+T
Sbjct: 619 MSTLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLET 661
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain).
Length = 679
Score = 55.8 bits (135), Expect = 4e-11
Identities = 21/43 (48%), Positives = 24/43 (55%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TL NP F+RCIK N K FD VL QLR G+L+
Sbjct: 573 MKTLRSTNPHFVRCIKPNEKKAAGPFDSSLVLHQLRCLGVLEG 615
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins. In
vertebrates, myosin XV appears to be expressed in
sensory tissue and play a role in hearing. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 52.2 bits (125), Expect = 7e-10
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
+ + + NP F+RC+K N K P F+ D V+ QLRY+G+L+T
Sbjct: 561 VEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLET 603
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins. Myosins
V transport a variety of intracellular cargo
processively along actin filaments, such as membraneous
organelles and mRNA. This catalytic (head) domain has
ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 691
Score = 51.2 bits (123), Expect = 2e-09
Identities = 23/43 (53%), Positives = 29/43 (67%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M+TLN NP +IRCIK N K P F+ VL+QLR G+L+T
Sbjct: 575 MSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLET 617
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins. Myosin I
generates movement at the leading edge in cell motility,
and class I myosins have been implicated in phagocytosis
and vesicle transport. Myosin I, an unconventional
myosin, does not form dimers. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the plus
end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 674
Score = 50.3 bits (121), Expect = 4e-09
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGML 41
+ TL + P +IRCIK N K PN+FD VL Q++Y G+L
Sbjct: 556 VETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLL 596
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins. Myosin
II mediates cortical contraction in cell motility, and
is the motor in smooth and skeletal muscle. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 693
Score = 49.9 bits (120), Expect = 5e-09
Identities = 20/41 (48%), Positives = 22/41 (53%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGML 41
M TL NP F+RCI N K P D VL QLR G+L
Sbjct: 576 MTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVL 616
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins.
Myosin III has been shown to play a role in the vision
process in insects and in hearing in mammals. Myosin
III, an unconventional myosin, does not form dimers.
This catalytic (head) domain has ATPase activity and
belongs to the larger group of P-loop NTPases. Myosins
are actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 653
Score = 48.3 bits (115), Expect = 2e-08
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 9 PFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
P F+RCIK N + FD + VL+QLRYTG+L+T
Sbjct: 547 PHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILET 581
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type
VIII myosins, a subgroup which has been associated with
endocytosis, cytokinesis, cell-to-cell coupling and
gating at plasmodesmata. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Myosins are actin-dependent molecular
motors that play important roles in muscle contraction,
cell motility, and organelle transport. The head domain
is a molecular motor, which utilizes ATP hydrolysis to
generate directed movement toward the plus end along
actin filaments. A cyclical interaction between myosin
and actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 677
Score = 46.7 bits (111), Expect = 6e-08
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLK 42
M L P FIRCIK N ++P ++ VL+QLR G+L+
Sbjct: 562 MQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLE 603
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI
myosin, involved in organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Myosins are
actin-dependent molecular motors that play important
roles in muscle contraction, cell motility, and
organelle transport. The head domain is a molecular
motor, which utilizes ATP hydrolysis to generate
directed movement toward the plus end along actin
filaments. A cyclical interaction between myosin and
actin provides the driving force. Rates of ATP
hydrolysis and consequently the speed of movement along
actin filaments vary widely, from about 0.04 micrometer
per second for myosin I to 4.5 micrometer per second for
myosin II in skeletal muscle. Myosin II moves in
discrete steps about 5-10 nm long and generates 1-5
piconewtons of force. Upon ATP binding, the myosin head
dissociates from an actin filament. ATP hydrolysis
causes the head to pivot and associate with a new actin
subunit. The release of Pi causes the head to pivot and
move the filament (power stroke). Release of ADP
completes the cycle.
Length = 674
Score = 45.0 bits (107), Expect = 3e-07
Identities = 19/41 (46%), Positives = 26/41 (63%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGML 41
M TL+ P +IRCIK N + P F+ + VL+QLR G+L
Sbjct: 556 METLSTTEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVL 596
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional.
Length = 821
Score = 41.9 bits (99), Expect = 4e-06
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQL 35
M+ +N P FIRCIK N K P +++ VL QL
Sbjct: 652 MSLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQL 686
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins. Myosin
VI is a monomeric myosin, which moves towards the
minus-end of actin filaments, in contrast to most other
myosins. It has been implicated in endocytosis,
secretion, and cell migration. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Myosins are actin-dependent
molecular motors that play important roles in muscle
contraction, cell motility, and organelle transport. The
head domain is a molecular motor, which utilizes ATP
hydrolysis to generate directed movement toward the
minus end along actin filaments. A cyclical interaction
between myosin and actin provides the driving force.
Rates of ATP hydrolysis and consequently the speed of
movement along actin filaments vary widely, from about
0.04 micrometer per second for myosin I to 4.5
micrometer per second for myosin II in skeletal muscle.
Myosin II moves in discrete steps about 5-10 nm long and
generates 1-5 piconewtons of force. Upon ATP binding,
the myosin head dissociates from an actin filament. ATP
hydrolysis causes the head to pivot and associate with a
new actin subunit. The release of Pi causes the head to
pivot and move the filament (power stroke). Release of
ADP completes the cycle.
Length = 717
Score = 34.8 bits (80), Expect = 0.001
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGML 41
+ L FIRCIK N + + F+ +L QL+ +GM+
Sbjct: 601 LEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCSGMV 641
>gnl|CDD|179914 PRK05014, hscB, co-chaperone HscB; Provisional.
Length = 171
Score = 26.4 bits (59), Expect = 0.89
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 21 KIPNNFDIDTVLRQLRYTGMLKTDIPNNFDIDTVQRQL 58
+P +DIDT L RY + + P+ F + + +L
Sbjct: 8 GLPARYDIDTQLLASRYQELQRQFHPDKFANASERERL 45
>gnl|CDD|239442 cd03326, MR_like_1, Mandelate racemase (MR)-like subfamily of the
enolase superfamily, subgroup 1. Enzymes of this
subgroup share three conserved carboxylate ligands for
the essential divalent metal ion (usually Mg2+), two
aspartates and a glutamate, and conserved catalytic
residues, a Lys-X-Lys motif and a conserved
histidine-aspartate dyad. This subgroup's function is
unknown.
Length = 385
Score = 26.2 bits (58), Expect = 1.2
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 28 IDTVLRQLRYTGMLKTDIPNNFDIDTVQRQLRYTGMLK 65
I+ L L L D FD++T + Y L
Sbjct: 195 IEAALDVLGDGARLAVDANGRFDLETA---IAYAKALA 229
>gnl|CDD|226441 COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino
acid transport and metabolism].
Length = 263
Score = 25.8 bits (57), Expect = 1.5
Identities = 5/18 (27%), Positives = 9/18 (50%)
Query: 43 TDIPNNFDIDTVQRQLRY 60
T +P N + +R+ R
Sbjct: 103 TVVPGNHPLSEEERRARI 120
>gnl|CDD|234542 TIGR04321, spiroSPASM, spiro-SPASM protein. This three-domain
protein is restricted to the spirochetes and widely
distributed (excepting Borrelia). It has a conserved
C-terminal SPASM domain, a 4Fe-4S binding domain shared
by a number of peptide-modifying and heme-modifying
radical SAM proteins. It has a central radical SAM
domain, although half the members have lost the
signature 4Fe-4S-binding Cys residues, fail to register
with the radical SAM domain definition of pfam04055, and
must be considered pseudo-SAM proteins. PSI-BLAST shows
a relationship between the N-terminal domain and various
predicted glycosyltransferases (e.g. Bacillus subtilis
SpsF) and cytidyltransferases. In some Treponema
species, this protein appears to split into two tandem
genes.
Length = 507
Score = 25.7 bits (57), Expect = 1.8
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 9 PFFIRCIKSNTMKIPNNFDIDTV-----LRQLR 36
P I K N+FDI+T LR LR
Sbjct: 153 PVSREAIFDILKKDINSFDIETEISPPDLRLLR 185
>gnl|CDD|173956 cd08197, DOIS, 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes
carbocycle formation from D-glucose-6-phosphate to
2-deoxy-scyllo-inosose through a multistep reaction in
the biosynthesis of aminoglycoside antibiotics.
2-deoxy-scyllo-inosose synthase (DOIS) catalyzes
carbocycle formation from D-glucose-6-phosphate to
2-deoxy-scyllo-inosose through a multistep reaction in
the biosynthesis of aminoglycoside antibiotics.
2-Deoxystreptamine (DOS)-containing aminoglycoside
antibiotics includes neomycin, kanamycin, gentamicin,
and ribostamycin. They are important antibacterial
agents. DOIS is a homologue of the dehydroquinate
synthase which catalyzes the cyclization of
3-deoxy-D-arabino-heputulosonate-7-phosphate to
dehydroquinate (DHQ) in the shikimate pathway.
Length = 355
Score = 25.0 bits (55), Expect = 3.6
Identities = 6/17 (35%), Positives = 13/17 (76%)
Query: 21 KIPNNFDIDTVLRQLRY 37
+IP++ +D +L ++RY
Sbjct: 293 RIPSDISLDDILHRVRY 309
>gnl|CDD|219814 pfam08385, DHC_N1, Dynein heavy chain, N-terminal region 1. Dynein
heavy chains interact with other heavy chains to form
dimers, and with intermediate chain-light chain
complexes to form a basal cargo binding unit. The region
featured in this family includes the sequences
implicated in mediating these interactions. It is
thought to be flexible and not to adopt a rigid
conformation.
Length = 577
Score = 24.2 bits (53), Expect = 8.0
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 2 NTLNQANPFFIRCIKSNTMKIPNNFDID--TVLRQLRYTGMLKTDIPNNF 49
N + + P IR N +++ NFD ++L+++RY +L ++P++
Sbjct: 460 NQFSLSQPLLIR-RSGNELELLVNFDPQLISLLKEVRYLQLLGFEVPSSA 508
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.140 0.415
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,497,399
Number of extensions: 256888
Number of successful extensions: 307
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 23
Length of query: 70
Length of database: 10,937,602
Length adjustment: 40
Effective length of query: 30
Effective length of database: 9,163,442
Effective search space: 274903260
Effective search space used: 274903260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.0 bits)