RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8604
(70 letters)
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 70.5 bits (173), Expect = 2e-16
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TLN P ++RCIK N K P FD ++QLR G+L+T
Sbjct: 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLET 690
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 70.2 bits (172), Expect = 2e-16
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TL NP F+RCI N K D VL QLR G+L+
Sbjct: 670 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEG 712
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 69.3 bits (170), Expect = 5e-16
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TL NP F+RCI N ++P + VL QLR G+L+
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEG 684
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 68.8 bits (169), Expect = 7e-16
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TLN P ++RCIK N K P FD ++QLR G+L+T
Sbjct: 648 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLET 690
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 68.9 bits (169), Expect = 8e-16
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TL+ NP F+RCI N K + VL QLR G+L+
Sbjct: 637 MATLSNTNPSFVRCIVPNHEKRAGKLEPRLVLDQLRCNGVLEG 679
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 68.8 bits (169), Expect = 8e-16
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
++ L FIRCIK N ++F+ +L QL+ +GM+
Sbjct: 651 LDKLRSTGASFIRCIKPNLKMTSHHFEGAQILSQLQCSGMVSV 693
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 68.4 bits (168), Expect = 8e-16
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M TL NP F+RCI N ++P + VL QLR G+L+
Sbjct: 642 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEG 684
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 68.0 bits (167), Expect = 1e-15
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
+ TL +P ++RCIKSN K D D V Q+RY G+L+
Sbjct: 574 ITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLEN 616
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 63.8 bits (156), Expect = 4e-14
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M L +P F+RCI N K P D V+ QLR G+L+
Sbjct: 659 MTNLRSTHPHFVRCIIPNETKSPGVMDNPLVMHQLRCNGVLEG 701
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 63.9 bits (156), Expect = 4e-14
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 1 MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
M L +P F+RCI N +K P D + VL QL+ G+L+
Sbjct: 657 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEG 699
>2hpi_A DNA polymerase III alpha subunit; POL-beta-like
nucleotidyltransferase fold, transferase; HET: DNA;
3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A*
Length = 1220
Score = 23.4 bits (51), Expect = 7.4
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 17 SNTMKIPNNFDIDTVLRQLRYTGMLKTDIPNNFDIDTVQRQLRYTGMLK 65
NT++I D+D + + + +P R+L + G+L+
Sbjct: 272 DNTVEIARMCDVDLPIGDKMVYRIPRFPLPEGRTEAQYLRELTFLGLLR 320
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 23.3 bits (51), Expect = 8.1
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 38 TGM-------LKTDIPNNFDIDTVQRQLRYTGMLKTVRY 69
TGM + +NF+ID + +++ + +Y
Sbjct: 219 TGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKY 257
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.140 0.415
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,048,076
Number of extensions: 47871
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 14
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)