RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8604
         (70 letters)



>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 69.8 bits (170), Expect = 1e-16
 Identities = 19/43 (44%), Positives = 22/43 (51%)

Query: 1   MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
           M TL   NP F+RCI  N  K     D   VL QLR  G+L+ 
Sbjct: 592 MTTLRNTNPNFVRCIIPNHEKRAGKLDAHLVLEQLRCNGVLEG 634


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 68.6 bits (167), Expect = 3e-16
 Identities = 18/43 (41%), Positives = 24/43 (55%)

Query: 1   MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
           M TL   NP F+RCI  N  ++P   +   VL QLR  G+L+ 
Sbjct: 595 MATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEG 637


>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 68.6 bits (167), Expect = 4e-16
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 1   MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
           + TL   +P ++RCIKSN  K     D D V  Q+RY G+L+ 
Sbjct: 566 ITTLLACSPHYVRCIKSNDNKQAGVIDEDRVRHQVRYLGLLEN 608


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 64.0 bits (155), Expect = 1e-14
 Identities = 20/43 (46%), Positives = 26/43 (60%)

Query: 1   MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
           M TLN   P ++RCIK N  K P  FD    ++QLR  G+L+T
Sbjct: 586 METLNATTPHYVRCIKPNDFKFPFTFDEKRAVQQLRACGVLET 628


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 57.4 bits (138), Expect = 3e-12
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 1   MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
           M  L   +P F+RCI  N  K P   + + VL QLR  G+L+ 
Sbjct: 612 MANLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNGVLEG 654


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 57.0 bits (137), Expect = 4e-12
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 1   MNTLNQANPFFIRCIKSNTMKIPNNFDIDTVLRQLRYTGMLKT 43
           M  L   +P F+RCI  N +K P   D + VL QL+  G+L+ 
Sbjct: 609 MKNLYSTHPHFVRCIIPNELKQPGLVDAELVLHQLQCNGVLEG 651


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 260,015
Number of extensions: 9553
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 9
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)