BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8607
         (131 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H8A|A Chain A, Structure Of Microsomal Glutathione Transferase 1 In
           Complex With Glutathione
          Length = 154

 Score = 59.7 bits (143), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 29  NDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVL 88
             +E    AHLNDLENI  FL I LLY ++ P +  A    RI+  AR  HTI Y +  L
Sbjct: 66  EKVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPL 124

Query: 89  PQPSRALCFTSGVLIEVYM 107
           PQP+R L F  G  + + M
Sbjct: 125 PQPNRGLAFFVGYGVTLSM 143


>pdb|4AL0|A Chain A, Crystal Structure Of Human Ps-1
 pdb|4AL1|A Chain A, Crystal Structure Of Human Ps-1 Gsh-analog Complex
          Length = 152

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 30  DLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLP 89
           D+E    AH ND+E I  FL +  +Y    P   +A     ++ + R  HT+ Y +  L 
Sbjct: 64  DVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLR 122

Query: 90  QPSRALCFT 98
            P R++ +T
Sbjct: 123 APIRSVTYT 131


>pdb|3DWW|A Chain A, Electron Crystallographic Structure Of Human Microsomal
           Prostaglandin E Synthase 1
 pdb|3DWW|B Chain B, Electron Crystallographic Structure Of Human Microsomal
           Prostaglandin E Synthase 1
 pdb|3DWW|C Chain C, Electron Crystallographic Structure Of Human Microsomal
           Prostaglandin E Synthase 1
          Length = 158

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 30  DLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLP 89
           D+E    AH ND+E I  FL +  +Y    P   +A     ++ + R  HT+ Y +  L 
Sbjct: 70  DVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLR 128

Query: 90  QPSRALCFT 98
            P R++ +T
Sbjct: 129 APIRSVTYT 137


>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
           Complex With Amp
          Length = 249

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 34  TPGAHLNDLENIPGFLIIALLYIMTD 59
           TPG  ++ LEN  GF + AL Y++ D
Sbjct: 168 TPGRLIDHLENTKGFNLRALKYLVMD 193


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.332    0.144    0.465 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,314,240
Number of Sequences: 62578
Number of extensions: 114395
Number of successful extensions: 230
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 5
length of query: 131
length of database: 14,973,337
effective HSP length: 88
effective length of query: 43
effective length of database: 9,466,473
effective search space: 407058339
effective search space used: 407058339
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 46 (22.3 bits)