Query psy8607
Match_columns 131
No_of_seqs 111 out of 670
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 23:07:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01124 MAPEG: MAPEG family; 99.8 2.1E-20 4.5E-25 132.6 8.0 85 28-113 45-129 (129)
2 COG3686 Predicted membrane pro 99.8 7E-19 1.5E-23 128.3 9.9 99 12-112 14-124 (125)
3 COG3788 Uncharacterized relati 99.3 2.9E-11 6.2E-16 88.7 10.3 88 26-115 39-126 (131)
4 COG5331 Uncharacterized protei 98.3 2E-06 4.3E-11 63.7 6.7 88 18-106 38-126 (139)
5 PF05232 BTP: Bacterial Transm 45.6 83 0.0018 20.4 6.6 47 37-83 8-54 (67)
6 PF14851 FAM176: FAM176 family 20.4 3.6E+02 0.0077 20.5 5.6 40 75-117 6-45 (153)
7 PF13787 HXXEE: Protein of unk 20.2 3E+02 0.0064 18.8 5.1 65 37-109 45-109 (116)
8 PF10834 DUF2560: Protein of u 19.5 89 0.0019 21.5 1.9 22 28-49 56-77 (80)
9 COG3790 Predicted membrane pro 18.4 1.6E+02 0.0035 20.9 3.0 28 82-110 8-35 (97)
10 KOG0914|consensus 18.0 5.7E+02 0.012 21.2 7.0 57 48-108 58-114 (265)
No 1
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=99.83 E-value=2.1e-20 Score=132.59 Aligned_cols=85 Identities=34% Similarity=0.393 Sum_probs=76.8
Q ss_pred CChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q psy8607 28 LNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEVYM 107 (131)
Q Consensus 28 ~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l~l 107 (131)
+++.+|++|||+|++||+|+|+++++++..+|+++..++.++++|+++|++|+.+| ..+..++.|+++|.+|+.+++.+
T Consensus 45 ~~~~~R~~ra~~N~~E~~~~f~~~~~~~~~~g~~~~~~~~l~~~~~~~R~~y~~~y-~~~~~~~~R~~~~~~~~~~~~~l 123 (129)
T PF01124_consen 45 PPWLERAQRAHQNFLENLPLFLVAVLLAILTGASPSLAALLAWVFVVARVAYAVGY-IAGNIPPLRSLGFLVGLLCLLAL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-T-HHHHHHHHHHHHHHHHHHHHHH-HCSSSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999 68833789999999999999999
Q ss_pred HHHHHH
Q psy8607 108 IVMYLH 113 (131)
Q Consensus 108 ~~~~l~ 113 (131)
.+..++
T Consensus 124 ~~~~~~ 129 (129)
T PF01124_consen 124 ALAALY 129 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 988753
No 2
>COG3686 Predicted membrane protein [Function unknown]
Probab=99.79 E-value=7e-19 Score=128.26 Aligned_cols=99 Identities=19% Similarity=0.155 Sum_probs=85.7
Q ss_pred hhhhhhchhheeeccC------------CChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Q psy8607 12 YPSLTLLPSLIISRAH------------LNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLH 79 (131)
Q Consensus 12 ~~~~~~~p~~~~~~~~------------~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlh 79 (131)
+|+++..-.+....++ .+..+|++|||||.+|.+|.|+++++.++++|.+...++.+++.|+++|++|
T Consensus 14 lpl~~~~~A~~~~g~~~Na~PRd~~~kl~G~a~RA~~A~~N~fE~fp~FaAavl~a~l~G~~~~~~~~~A~l~i~~RllY 93 (125)
T COG3686 14 LPLLCSAYAKFEGGRRWNAGPRDFLAKLQGLAGRANRAQQNFFETFPAFAAAVLVAHLTGNPSQAANTLAILFIAARLLY 93 (125)
T ss_pred HHHHHHHHHHhhcCCcCCCCchhhhccCccHHHHHHHHHhhhHHhhHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 4666665555544322 2345799999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHH
Q psy8607 80 TIVYGIYVLPQPSRALCFTSGVLIEVYMIVMYL 112 (131)
Q Consensus 80 t~~Y~~~~~p~~lRsl~~~vg~~~~l~l~~~~l 112 (131)
++.| +.|. +++||++|.+|+.++..|++...
T Consensus 94 i~~Y-la~~-p~lRSlvW~~gmvg~~~lfv~~~ 124 (125)
T COG3686 94 IPCY-LADI-PYLRSLVWLGGMVGTGALFVALA 124 (125)
T ss_pred HHHH-HcCc-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999 8999 69999999999999999988753
No 3
>COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]
Probab=99.30 E-value=2.9e-11 Score=88.72 Aligned_cols=88 Identities=25% Similarity=0.193 Sum_probs=78.8
Q ss_pred cCCChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q psy8607 26 AHLNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEV 105 (131)
Q Consensus 26 ~~~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l 105 (131)
+++++++|+.|||.|+.|.+|.+++++++..+.|..+-+...++.+++++|++|..+. .. .++|.|...+...+.+.+
T Consensus 39 gg~~eLqraira~gNatEYIPi~lill~~lemnga~tw~ihilG~il~~gRv~Ha~g~-~~-~~~~~R~~Gm~aTw~~li 116 (131)
T COG3788 39 GGFSELQRAIRAHGNATEYIPIGLILLLFLEMNGAETWMVHILGIILTAGRVLHAYGL-HH-RLSPWRASGMSATWCALI 116 (131)
T ss_pred CChHHHHHHHHHcCChHHHhHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH-hc-cCCcchhhhHHHHHHHHH
Confidence 4467889999999999999999999999999999999999999999999999998887 34 458999999999999988
Q ss_pred HHHHHHHHHH
Q psy8607 106 YMIVMYLHAS 115 (131)
Q Consensus 106 ~l~~~~l~~~ 115 (131)
.+.+.-++..
T Consensus 117 v~~lanl~y~ 126 (131)
T COG3788 117 VMVLANLWYL 126 (131)
T ss_pred HHHHHHHHhh
Confidence 8888776653
No 4
>COG5331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.32 E-value=2e-06 Score=63.69 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=70.9
Q ss_pred chhheeeccCCChh-hhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHH
Q psy8607 18 LPSLIISRAHLNDL-ENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALC 96 (131)
Q Consensus 18 ~p~~~~~~~~~~~~-~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~ 96 (131)
-|..|...+++|.. --..+.-.|.+|-...|...++....|+.++..+..++|+|+..|.+|..++ .+...-+.|+..
T Consensus 38 ~~~~~r~~~te~q~S~~V~nnl~NqFElPVLF~alcl~L~iT~~~n~vtv~lAWiFVl~Ry~Hs~VH-vtsN~lr~R~p~ 116 (139)
T COG5331 38 KVQQYRVRNTEPQISLSVSNNLANQFELPVLFYALCLLLYITQAVNTVTVNLAWIFVLFRYAHSVVH-VTSNRLRLRQPL 116 (139)
T ss_pred cHHHhhcCCCCcccCHHHHHhHHHhhhhhHHHHHHHHHHHhhcccceeeeHHHHHHHHHHHHHHHhe-ehhchhhhhhhH
Confidence 34445444444422 2356688999999999999999999999999999999999999999999999 566546889999
Q ss_pred HHHHHHHHHH
Q psy8607 97 FTSGVLIEVY 106 (131)
Q Consensus 97 ~~vg~~~~l~ 106 (131)
|+.|+.....
T Consensus 117 f~~gfavLa~ 126 (139)
T COG5331 117 FLAGFAVLAV 126 (139)
T ss_pred HHHHHHHHHH
Confidence 9999765443
No 5
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=45.64 E-value=83 Score=20.43 Aligned_cols=47 Identities=13% Similarity=-0.002 Sum_probs=43.2
Q ss_pred HHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8607 37 AHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVY 83 (131)
Q Consensus 37 AH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y 83 (131)
-|.=.+|...+....-+++..+|.+...+..+...+.+.=+.|+..|
T Consensus 8 ~hai~FE~~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~if 54 (67)
T PF05232_consen 8 LHAILFEVGALLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIF 54 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999998888888888
No 6
>PF14851 FAM176: FAM176 family
Probab=20.36 E-value=3.6e+02 Score=20.55 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8607 75 ARFLHTIVYGIYVLPQPSRALCFTSGVLIEVYMIVMYLHASTI 117 (131)
Q Consensus 75 aRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l~l~~~~l~~~~~ 117 (131)
+=-+-+..| +.+. |-|...|++.-+|...++.+.++-.++
T Consensus 6 SnsLaaya~-I~~~--PE~~aLYFv~gVC~GLlLtLcllV~ri 45 (153)
T PF14851_consen 6 SNSLAAYAH-IRDN--PERFALYFVSGVCAGLLLTLCLLVIRI 45 (153)
T ss_pred HHHHHHHHH-HHhC--hHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 334556678 5665 779888888877777666666554443
No 7
>PF13787 HXXEE: Protein of unknown function with HXXEE motif
Probab=20.23 E-value=3e+02 Score=18.80 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=37.6
Q ss_pred HHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHH
Q psy8607 37 AHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEVYMIV 109 (131)
Q Consensus 37 AH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l~l~~ 109 (131)
=--|-.|.......+......++. ..+....+...=++|.+.| +... -..|+ |.=|+++.+.+.+
T Consensus 45 f~~~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~H-i~~~-~~~~~--Y~PGl~Ta~ll~l 109 (116)
T PF13787_consen 45 FAVNVAIEFILVLLAAFLAARFGN----YPWWGLAFIAFMFLNLIFH-IIQA-FIFRK--YNPGLVTAILLFL 109 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHH-HHHH-HHhCC--CCcHHHHHHHHHH
Confidence 334666666666677776666665 3344445555567788888 3433 22333 6667666655533
No 8
>PF10834 DUF2560: Protein of unknown function (DUF2560); InterPro: IPR022544 This entry is represented by Bacteriophage P22, Orf80. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=19.48 E-value=89 Score=21.49 Aligned_cols=22 Identities=18% Similarity=-0.023 Sum_probs=19.4
Q ss_pred CChhhhHHHHHhhchhhHHHHH
Q psy8607 28 LNDLENTPGAHLNDLENIPGFL 49 (131)
Q Consensus 28 ~~~~~Ra~RAH~N~lEnlp~Fl 49 (131)
...+.|.+-|-|++-|.+++|-
T Consensus 56 ~~~vart~KAIq~~kEAL~LF~ 77 (80)
T PF10834_consen 56 STVVARTIKAIQESKEALDLFD 77 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999999984
No 9
>COG3790 Predicted membrane protein [Function unknown]
Probab=18.35 E-value=1.6e+02 Score=20.87 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=21.4
Q ss_pred HHhhcCCCCChhHHHHHHHHHHHHHHHHH
Q psy8607 82 VYGIYVLPQPSRALCFTSGVLIEVYMIVM 110 (131)
Q Consensus 82 ~Y~~~~~p~~lRsl~~~vg~~~~l~l~~~ 110 (131)
.|.+.+. .|+|.+.+..++.....+++.
T Consensus 8 ly~i~dK-~~LraLSfvla~~la~~~fwd 35 (97)
T COG3790 8 LYAIMDK-GPLRALSFVLAFLLAGCVFWD 35 (97)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHHHhcC
Confidence 4555666 799999999998877777654
No 10
>KOG0914|consensus
Probab=17.97 E-value=5.7e+02 Score=21.17 Aligned_cols=57 Identities=11% Similarity=0.160 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHH
Q psy8607 48 FLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEVYMI 108 (131)
Q Consensus 48 Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l~l~ 108 (131)
+..+++.+.=...+..|.+..+-.|+.+.++-+++....+ .|...|.+-....++|.
T Consensus 58 mflliivaiK~rrs~twe~yvansfLysKia~~~l~~~~D----~r~gl~fillc~vv~ml 114 (265)
T KOG0914|consen 58 MFLLIIVAIKMRRSETWEAYVANSFLYSKIANIILFLRAD----IRVGLWFILLCSVVYML 114 (265)
T ss_pred HHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 3333444445555788999999999999999999984333 37777766555555554
Done!