Query psy8607
Match_columns 131
No_of_seqs 111 out of 670
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 23:08:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8607.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8607hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dww_A Prostaglandin E synthas 99.9 6E-24 2E-28 160.0 7.5 89 26-115 66-154 (158)
2 2h8a_A Microsomal glutathione 99.8 4.2E-22 1.4E-26 148.2 3.0 89 26-115 63-151 (154)
3 3pcv_A Leukotriene C4 synthase 99.8 2.8E-18 9.4E-23 129.0 10.3 84 26-113 41-124 (156)
4 2q7r_A Arachidonate 5-lipoxyge 99.7 2.4E-18 8.2E-23 129.7 6.4 85 26-114 45-129 (161)
5 3dxe_B Amyloid beta A4 protein 12.8 80 0.0027 17.6 1.1 13 33-45 13-25 (35)
6 2juj_A E3 ubiquitin-protein li 6.7 1.2E+02 0.004 18.7 0.2 20 26-45 19-38 (56)
7 2i15_A A05_ORF129, hypothetica 6.1 3.4E+02 0.012 18.8 2.4 26 34-61 92-117 (135)
8 2qts_A Acid-sensing ION channe 5.5 5.1E+02 0.018 20.4 3.6 37 78-115 3-40 (438)
9 3ui3_A Immunoglobulin G-bindin 5.3 1.1E+02 0.0038 22.6 -0.5 9 120-128 129-137 (160)
10 1bl1_A Parathyroid hormone rec 4.6 3.2E+02 0.011 14.7 1.2 9 76-84 21-29 (31)
No 1
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle, isomerase, membrane, transmembrane; HET: GSH; 3.50A {Homo sapiens}
Probab=99.90 E-value=6e-24 Score=160.02 Aligned_cols=89 Identities=27% Similarity=0.407 Sum_probs=84.4
Q ss_pred cCCChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q psy8607 26 AHLNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEV 105 (131)
Q Consensus 26 ~~~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l 105 (131)
+|||++||++|||+|++||+|+|+++++++.++|+++.++..++++|+++|++|+.+| ..+.|++.|+++|.+|+++++
T Consensus 66 ~~~~~~~Ra~RAh~N~lE~~p~Fl~~~ll~~l~g~~~~~~~~l~~~fv~~Rilh~~~Y-~~~~p~~~Rsl~~~vg~~~~~ 144 (158)
T 3dww_A 66 RSDPDVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLRAPIRSVTYTLAQLPCA 144 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHT-TSSCCGGGGHHHHHHHHSSHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999999999999999999 788878999999999999999
Q ss_pred HHHHHHHHHH
Q psy8607 106 YMIVMYLHAS 115 (131)
Q Consensus 106 ~l~~~~l~~~ 115 (131)
.|++++++.+
T Consensus 145 ~m~~~~l~~~ 154 (158)
T 3dww_A 145 SMALQILWEA 154 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998875
No 2
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH; 3.20A {Rattus norvegicus} SCOP: f.56.1.1
Probab=99.84 E-value=4.2e-22 Score=148.21 Aligned_cols=89 Identities=40% Similarity=0.566 Sum_probs=80.2
Q ss_pred cCCChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q psy8607 26 AHLNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEV 105 (131)
Q Consensus 26 ~~~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l 105 (131)
+++|+++|++|||+|++|++|+|+++++++.++|+++.++..++++|+++|++|+.+| ..+.|++.|+++|.+|+++++
T Consensus 63 ~~~~~~~Ra~rAh~N~~E~~p~F~~~~ll~~~~g~~~~~~~~l~~~~v~~Ri~h~~~y-~~~~~~~~R~~~~~~~~~~~~ 141 (154)
T 2h8a_A 63 RTDEKVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLPQPNRGLAFFVGYGVTL 141 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTTSCCCSTTHHHHHHHHHHHHHHHHHHH-HSSCSHHHHHHHHHHHTHHHH
T ss_pred cCCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999999 688856899999999999999
Q ss_pred HHHHHHHHHH
Q psy8607 106 YMIVMYLHAS 115 (131)
Q Consensus 106 ~l~~~~l~~~ 115 (131)
.|+++.+...
T Consensus 142 ~l~~~~l~~~ 151 (154)
T 2h8a_A 142 SMAYRLLRSR 151 (154)
T ss_dssp HHHHTC----
T ss_pred HHHHHHHHHH
Confidence 9999877553
No 3
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=99.76 E-value=2.8e-18 Score=128.96 Aligned_cols=84 Identities=15% Similarity=0.016 Sum_probs=75.1
Q ss_pred cCCChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q psy8607 26 AHLNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEV 105 (131)
Q Consensus 26 ~~~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l 105 (131)
++|++.||++|||+|++||+|+|+++++++.+++++ .++..++.+|+++|++|+.+| ..+ ++.|+..|.+++++++
T Consensus 41 ~g~~~f~Ra~RAH~N~lE~~P~fl~ll~l~~l~~~~-~~a~~lg~~~~~gRily~~gY-~~~--~~~R~~G~~~t~~~~~ 116 (156)
T 3pcv_A 41 TGPPEFERVYRAQVNCSEYFPLFLATLWVAGIFFHE-GAAALCGLVYLFARLRYFQGY-ARS--AQLRLAPLYASARALW 116 (156)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHH-HHC--GGGGHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHH-hcC--CCccHHHHHHHHHHHH
Confidence 457899999999999999999999999999999854 788999999999999999999 576 5889999999999888
Q ss_pred HHHHHHHH
Q psy8607 106 YMIVMYLH 113 (131)
Q Consensus 106 ~l~~~~l~ 113 (131)
.+.+....
T Consensus 117 ~L~~~~~~ 124 (156)
T 3pcv_A 117 LLVALAAL 124 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88766543
No 4
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Probab=99.74 E-value=2.4e-18 Score=129.72 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=75.9
Q ss_pred cCCChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q psy8607 26 AHLNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEV 105 (131)
Q Consensus 26 ~~~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l 105 (131)
++|++.||++|||+|++||+|+|+++++++.++| ++.++..++++|+++|++|+.+| .. .|+ .|+.+|.+|+++++
T Consensus 45 ~g~~~f~R~~RAh~N~lE~~P~fl~llll~~l~g-~~~~a~~~G~i~l~gRily~~gY-~~-~p~-~R~~G~~~~~l~l~ 120 (161)
T 2q7r_A 45 TGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLC-SQVPAAFAGLMYLFVRQKYFVGY-LG-ERT-QSTPGYIFGKRIIL 120 (161)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHT-CC-SSS-CCCCCSCCCHHHHH
T ss_pred CCcHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHH-hC-CCc-chHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999 88899999999999999999999 45 444 89999999998888
Q ss_pred HHHHHHHHH
Q psy8607 106 YMIVMYLHA 114 (131)
Q Consensus 106 ~l~~~~l~~ 114 (131)
.|.+..+.-
T Consensus 121 ~l~~~~l~g 129 (161)
T 2q7r_A 121 FLFLMSVAG 129 (161)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887765543
No 5
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=12.79 E-value=80 Score=17.57 Aligned_cols=13 Identities=23% Similarity=0.176 Sum_probs=10.4
Q ss_pred hHHHHHhhchhhH
Q psy8607 33 NTPGAHLNDLENI 45 (131)
Q Consensus 33 Ra~RAH~N~lEnl 45 (131)
-..+-|+|+.||.
T Consensus 13 h~~~mQ~~GYENP 25 (35)
T 3dxe_B 13 HLSKMQQNGYENP 25 (35)
T ss_dssp HHHHHHHTCEECH
T ss_pred HHHHHHhccCcCc
Confidence 3677889999993
No 6
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=6.72 E-value=1.2e+02 Score=18.67 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=16.8
Q ss_pred cCCChhhhHHHHHhhchhhH
Q psy8607 26 AHLNDLENTPGAHLNDLENI 45 (131)
Q Consensus 26 ~~~~~~~Ra~RAH~N~lEnl 45 (131)
++..++.|+.+.-+|++|.-
T Consensus 19 fsr~da~~AL~ia~Ndv~~A 38 (56)
T 2juj_A 19 YSYQDIQKALVIAQNNIEMA 38 (56)
T ss_dssp CCHHHHHHHHHHTTTCSHHH
T ss_pred CCHHHHHHHHHHhcccHHHH
Confidence 56778899999999999963
No 7
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=6.12 E-value=3.4e+02 Score=18.78 Aligned_cols=26 Identities=12% Similarity=0.019 Sum_probs=18.8
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHhCCC
Q psy8607 34 TPGAHLNDLENIPGFLIIALLYIMTDPG 61 (131)
Q Consensus 34 a~RAH~N~lEnlp~Fl~avlla~ltg~~ 61 (131)
.+.+-||..|.+.+|.-+. ++-.|.+
T Consensus 92 ~~~ccq~fyeal~~fisal--aitkgi~ 117 (135)
T 2i15_A 92 VKSCCQSFYEALTLFISAL--AITKGVD 117 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHcCCC
Confidence 5678899999999987654 4444544
No 8
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=5.47 E-value=5.1e+02 Score=20.44 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=17.6
Q ss_pred HHHHHHhhcCC-CCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy8607 78 LHTIVYGIYVL-PQPSRALCFTSGVLIEVYMIVMYLHAS 115 (131)
Q Consensus 78 lht~~Y~~~~~-p~~lRsl~~~vg~~~~l~l~~~~l~~~ 115 (131)
+|.+-| +.+. ....|-++|.+-+++.+++.+..+...
T Consensus 3 iHG~~~-i~~~~~~~~eR~~W~~~~l~s~~~~~~~~~~~ 40 (438)
T 2qts_A 3 LHGISH-IFSYERLSLKRVVWALCFMGSLALLALVCTNR 40 (438)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcch-hhcCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888 5554 235778999988887777776555443
No 9
>3ui3_A Immunoglobulin G-binding protein G, virulence-ASS protein D; ferrodoxin-like fold, virulence associated protein D, ribonu RNA binding protein; 2.80A {Streptococcus}
Probab=5.34 E-value=1.1e+02 Score=22.57 Aligned_cols=9 Identities=56% Similarity=0.870 Sum_probs=6.5
Q ss_pred hhhhhhhhc
Q psy8607 120 HSCVRDLRA 128 (131)
Q Consensus 120 ~~~~~~~~~ 128 (131)
-+||||+|.
T Consensus 129 ~~cVrDIR~ 137 (160)
T 3ui3_A 129 KKSVRDIRA 137 (160)
T ss_dssp HHHEEEEEE
T ss_pred HHHhhhcee
Confidence 468888875
No 10
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=4.64 E-value=3.2e+02 Score=14.66 Aligned_cols=9 Identities=22% Similarity=0.434 Sum_probs=5.8
Q ss_pred HHHHHHHHh
Q psy8607 76 RFLHTIVYG 84 (131)
Q Consensus 76 Rvlht~~Y~ 84 (131)
.+.||++|+
T Consensus 21 ~~iYTVGYS 29 (31)
T 1bl1_A 21 GMIYTVGYS 29 (31)
T ss_dssp HHHHHHHHH
T ss_pred eeEEEEeee
Confidence 356777774
Done!