Query psy8607
Match_columns 131
No_of_seqs 111 out of 670
Neff 5.6
Searched_HMMs 13730
Date Fri Aug 16 23:08:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8607.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8607hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h8aa1 f.56.1.1 (A:9-147) Mic 99.9 9.9E-25 7.2E-29 158.9 3.0 82 28-110 57-138 (139)
2 d2uuia1 f.56.1.1 (A:2-147) Leu 99.6 1E-15 7.6E-20 112.0 11.4 83 25-111 39-121 (146)
3 d2q7ra1 f.56.1.1 (A:1-139) Ara 99.5 6.5E-15 4.7E-19 107.0 7.8 81 26-110 45-125 (139)
4 d3cx5c2 f.21.1.2 (C:1-261) Mit 6.4 2.2E+02 0.016 20.3 3.7 18 91-108 108-125 (261)
5 d1znfa_ g.37.1.1 (A:) XFIN, th 5.7 49 0.0035 15.7 -0.3 13 28-40 13-25 (26)
6 d1oqya1 a.5.2.1 (A:160-200) DN 4.8 1E+02 0.0073 15.9 0.6 21 26-46 16-36 (41)
7 d1fkma1 a.69.2.1 (A:249-442) Y 4.3 2E+02 0.014 18.6 2.0 18 81-100 28-45 (194)
8 d1t61c1 d.169.1.6 (C:6-114) No 3.8 89 0.0065 19.9 -0.3 11 120-130 45-55 (109)
9 d1f3ua_ b.65.1.1 (A:) TFIIF be 3.7 71 0.0051 20.2 -0.8 10 4-13 17-26 (118)
10 d2hz5a1 d.110.7.1 (A:5-94) Dyn 3.7 3.6E+02 0.026 15.8 2.7 14 116-129 46-59 (90)
No 1
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.89 E-value=9.9e-25 Score=158.85 Aligned_cols=82 Identities=43% Similarity=0.596 Sum_probs=78.7
Q ss_pred CChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHH
Q psy8607 28 LNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEVYM 107 (131)
Q Consensus 28 ~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l~l 107 (131)
+|++||++|||+|++||+|+|+++++++.++|+++..+..++++|+++|++|++.| +.+.|+|+|++.|.+|++++++|
T Consensus 57 ~~~v~R~~rah~N~~E~~~~F~~~~l~~~~~~~~~~~~~~l~~~f~~~Ri~h~~~y-~~~~~~p~R~~~~~~g~~~~~~m 135 (139)
T d2h8aa1 57 DEKVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLPQPNRGLAFFVGYGVTLSM 135 (139)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTTSCCCSTTHHHHHHHHHHHHHHHHHHH-HSSCSHHHHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHHHcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HhcCCccHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999 79987789999999999999999
Q ss_pred HHH
Q psy8607 108 IVM 110 (131)
Q Consensus 108 ~~~ 110 (131)
+++
T Consensus 136 ~~~ 138 (139)
T d2h8aa1 136 AYR 138 (139)
T ss_dssp HHT
T ss_pred HHh
Confidence 986
No 2
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=1e-15 Score=112.01 Aligned_cols=83 Identities=16% Similarity=0.019 Sum_probs=67.9
Q ss_pred ccCCChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHH
Q psy8607 25 RAHLNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIE 104 (131)
Q Consensus 25 ~~~~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~ 104 (131)
.++||+.||++|||||+.|++|+|+++.+++.+.++ +.++..++.+|+++|+.|+.+| .. . +..|...+..|+...
T Consensus 39 ~~g~~~fera~RaH~N~~E~~P~fL~ll~l~~l~~~-~~~a~~lG~~~~vgRi~ha~gy-~~-~-~~kr~~g~~~~~~~~ 114 (146)
T d2uuia1 39 TTGPPEFERVYRAQVNCSEYFPLFLATLWVAGIFFH-EGAAALCGLVYLFARLRYFQGY-AR-S-AQLRLAPLYASARAL 114 (146)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHH-HH-C-GGGGHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhhHhhHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHhh-hc-C-cccCCcCchHHHHHH
Confidence 367899999999999999999999999999999986 4678899999999999999999 44 4 245766666676665
Q ss_pred HHHHHHH
Q psy8607 105 VYMIVMY 111 (131)
Q Consensus 105 l~l~~~~ 111 (131)
..+....
T Consensus 115 ~~ll~~a 121 (146)
T d2uuia1 115 WLLVALA 121 (146)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
No 3
>d2q7ra1 f.56.1.1 (A:1-139) Arachidonate 5-lipoxygenase-activating protein, FLAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.54 E-value=6.5e-15 Score=106.98 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=65.3
Q ss_pred cCCChhhhHHHHHhhchhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHH
Q psy8607 26 AHLNDLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALCFTSGVLIEV 105 (131)
Q Consensus 26 ~~~~~~~Ra~RAH~N~lEnlp~Fl~avlla~ltg~~~~~a~~la~~fviaRvlht~~Y~~~~~p~~lRsl~~~vg~~~~l 105 (131)
++||+.||++|||+|+.|+.|.|+++.++..+.++ +.++..++..|+++|+.|..+| .+.| ..|...+.+|.....
T Consensus 45 ~g~~~f~ra~RaH~N~~E~~p~~L~~l~~~~l~~~-~~~a~~~G~~~~vgR~~ha~Gy--~~~~-~kR~~g~~~~~~~~~ 120 (139)
T d2q7ra1 45 TGTLAFERVYTANQNCVDAYPTFLAVLWSAGLLCS-QVPAAFAGLMYLFVRQKYFVGY--LGER-TQSTPGYIFGKRIIL 120 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHHHHHHT--CCSS-SCCCCCSCCCHHHHH
T ss_pred CCCHHHHHHHHHHhhhHhhHHHHHHHHHHHHhccC-HHHHHHHHHHHHHHHHHHHHHH--hCCc-ccCcCCchHHHHHHH
Confidence 45889999999999999999999999999999985 5678899999999999999999 3553 446555555555555
Q ss_pred HHHHH
Q psy8607 106 YMIVM 110 (131)
Q Consensus 106 ~l~~~ 110 (131)
.+...
T Consensus 121 ~L~~~ 125 (139)
T d2q7ra1 121 FLFLM 125 (139)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 4
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.41 E-value=2.2e+02 Score=20.26 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=12.9
Q ss_pred ChhHHHHHHHHHHHHHHH
Q psy8607 91 PSRALCFTSGVLIEVYMI 108 (131)
Q Consensus 91 ~lRsl~~~vg~~~~l~l~ 108 (131)
..|...|.+|++..+.+.
T Consensus 108 ~pre~~W~~Gv~l~~l~~ 125 (261)
T d3cx5c2 108 SPRVTLWNVGVIIFILTI 125 (261)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred CccchhHHhhHHHHHHHH
Confidence 449999999976555443
No 5
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=5.75 E-value=49 Score=15.74 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=9.0
Q ss_pred CChhhhHHHHHhh
Q psy8607 28 LNDLENTPGAHLN 40 (131)
Q Consensus 28 ~~~~~Ra~RAH~N 40 (131)
+..+.|-+|.|.|
T Consensus 13 ksalsrhqrvhkn 25 (26)
T d1znfa_ 13 KSALSRHQRVHKN 25 (26)
T ss_dssp HHHHHHHGGGTCC
T ss_pred HHHHHHHHHhhcc
Confidence 3456678888876
No 6
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.84 E-value=1e+02 Score=15.92 Aligned_cols=21 Identities=10% Similarity=-0.037 Sum_probs=16.5
Q ss_pred cCCChhhhHHHHHhhchhhHH
Q psy8607 26 AHLNDLENTPGAHLNDLENIP 46 (131)
Q Consensus 26 ~~~~~~~Ra~RAH~N~lEnlp 46 (131)
++.+.+.++.++..|..|.-.
T Consensus 16 F~~~~a~~AL~~~~~N~e~A~ 36 (41)
T d1oqya1 16 YERERVVAALRASYNNPHRAV 36 (41)
T ss_dssp CCSHHHHHHHHHSCSSTTHHH
T ss_pred CCHHHHHHHHHHhCCCHHHHH
Confidence 566778889999999888654
No 7
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.33 E-value=2e+02 Score=18.58 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=13.9
Q ss_pred HHHhhcCCCCChhHHHHHHH
Q psy8607 81 IVYGIYVLPQPSRALCFTSG 100 (131)
Q Consensus 81 ~~Y~~~~~p~~lRsl~~~vg 100 (131)
..| .|+|+..|+.+|..=
T Consensus 28 l~~--~Gip~~lR~~vW~~l 45 (194)
T d1fkma1 28 ISW--NGIPKIHRPVVWKLL 45 (194)
T ss_dssp HHT--TCCCGGGHHHHHHHH
T ss_pred HHH--cCCChHHHHHHHHHH
Confidence 445 689888999999754
No 8
>d1t61c1 d.169.1.6 (C:6-114) Noncollagenous (NC1) domain of collagen IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.76 E-value=89 Score=19.87 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=8.0
Q ss_pred hhhhhhhhcCC
Q psy8607 120 HSCVRDLRASP 130 (131)
Q Consensus 120 ~~~~~~~~~~~ 130 (131)
-||.+|.|..|
T Consensus 45 GSCL~~Fr~~P 55 (109)
T d1t61c1 45 GSCLARFSTMP 55 (109)
T ss_dssp GGEESSCCSCC
T ss_pred ccccccccCCC
Confidence 47777777766
No 9
>d1f3ua_ b.65.1.1 (A:) TFIIF beta subunit, Rap30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.71 E-value=71 Score=20.21 Aligned_cols=10 Identities=50% Similarity=1.278 Sum_probs=7.8
Q ss_pred hhhhhhchhh
Q psy8607 4 CWLIRVPIYP 13 (131)
Q Consensus 4 ~~~~~~~~~~ 13 (131)
.||.|||-|=
T Consensus 17 VWLvKvPkyl 26 (118)
T d1f3ua_ 17 VWLVKVPKYL 26 (118)
T ss_dssp EEEEEEEHHH
T ss_pred EEEEECCHHH
Confidence 6999998653
No 10
>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.65 E-value=3.6e+02 Score=15.77 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=10.6
Q ss_pred HHhhhhhhhhhhcC
Q psy8607 116 TILAHSCVRDLRAS 129 (131)
Q Consensus 116 ~~~~~~~~~~~~~~ 129 (131)
.-.|+++|||+-.+
T Consensus 46 ~~~A~~~vrdlDp~ 59 (90)
T d2hz5a1 46 ILKARSTVRDIDPQ 59 (90)
T ss_dssp HHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCCC
Confidence 55788999998543
Done!