RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8607
         (131 letters)



>gnl|CDD|216311 pfam01124, MAPEG, MAPEG family.  This family is has been called
           MAPEG (Membrane Associated Proteins in Eicosanoid and
           Glutathione metabolism). It includes proteins such as
           Prostaglandin E synthase. This enzyme catalyzes the
           synthesis of PGE2 from PGH2 (produced by cyclooxygenase
           from arachidonic acid). Because of structural
           similarities in the active sites of FLAP, LTC4 synthase
           and PGE synthase, substrates for each enzyme can compete
           with one another and modulate synthetic activity.
          Length = 123

 Score = 49.6 bits (119), Expect = 9e-09
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 37  AHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRALC 96
           AH N LEN+P FL   LL  +T    + A  L  ++ +AR LH + Y       P R+L 
Sbjct: 50  AHQNTLENLPLFLAALLLAGLTGSPGLAA-LLAWLFVVARVLHAVGY-ATGNIPPLRSLG 107

Query: 97  FTSGVLIEVYMIVM 110
           F  G L  + + ++
Sbjct: 108 FALGFLALLALALL 121


>gnl|CDD|239476 cd03381, PAP2_glucose_6_phosphatase, PAP2_like proteins,
           glucose-6-phosphatase subfamily. Glucose-6-phosphatase
           converts glucose-6-phosphate into free glucose and is
           active in the lumen of the endoplasmic reticulum, where
           it is bound to the membrane. The generation of free
           glucose is an important control point in metabolism, and
           stands at the end of gluconeogenesis and the release of
           glucose from glycogen. Deficiency of
           glucose-6-phosphatase leads to von Gierke's disease.
          Length = 235

 Score = 27.3 bits (61), Expect = 2.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 61  GVMLACWLIRIYTLARFLHTIVYGIY 86
           GV LA  L RIY  A F H ++ G+ 
Sbjct: 116 GVQLAVCLSRIYLAAHFPHQVIAGVI 141


>gnl|CDD|177446 PHA02663, PHA02663, hypothetical protein; Provisional.
          Length = 172

 Score = 26.8 bits (59), Expect = 3.3
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 28  LNDLENTPGAHLN-DLENIPGFLIIALLYIMTDPGVM-----LACWLIRIYTLARFLHTI 81
           L +L N      N +  +IP  L+ ALL   T PG M     L   + R++T  R L   
Sbjct: 52  LQELSNAGDYRANPENSHIPAALVSALLEAPTSPGRMVTAVELCAQMGRLWTRGRQLIDF 111

Query: 82  VYGIYVL 88
           +  ++VL
Sbjct: 112 MRLVHVL 118


>gnl|CDD|181361 PRK08295, PRK08295, RNA polymerase factor sigma-70; Validated.
          Length = 208

 Score = 26.0 bits (58), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 21  LIISRAHLNDLENTPGAHLNDLE 43
           LIIS+  L D+E      L++LE
Sbjct: 138 LIISKEELEDIEEKIEELLSELE 160


>gnl|CDD|226211 COG3686, COG3686, Predicted membrane protein [Function unknown].
          Length = 125

 Score = 25.4 bits (56), Expect = 7.9
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 36 GAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVY 83
           A  N  E  P F    L+  +T      A  L  ++  AR L+   Y
Sbjct: 50 RAQQNFFETFPAFAAAVLVAHLTGNPSQAANTLAILFIAARLLYIPCY 97


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0720    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,940,800
Number of extensions: 638843
Number of successful extensions: 608
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 31
Length of query: 131
Length of database: 10,937,602
Length adjustment: 86
Effective length of query: 45
Effective length of database: 7,123,158
Effective search space: 320542110
Effective search space used: 320542110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.2 bits)