RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8607
         (131 letters)



>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle,
           isomerase, membrane, transmembrane; HET: GSH; 3.50A
           {Homo sapiens}
          Length = 158

 Score = 87.4 bits (216), Expect = 3e-23
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 30  DLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLP 89
           D+E    AH ND+E I  FL +  +Y    P   +A     ++ + R  HT+ Y +  L 
Sbjct: 70  DVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLR 128

Query: 90  QPSRALCFTSGVLIEVYMIVMYLHAST 116
            P R++ +T   L    M +  L  + 
Sbjct: 129 APIRSVTYTLAQLPCASMALQILWEAA 155


>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH;
           3.20A {Rattus norvegicus} SCOP: f.56.1.1
          Length = 154

 Score = 85.1 bits (210), Expect = 3e-22
 Identities = 35/79 (44%), Positives = 44/79 (55%), Gaps = 1/79 (1%)

Query: 36  GAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVYGIYVLPQPSRAL 95
            AHLNDLENI  FL I LLY ++ P +  A    RI+  AR  HTI Y +  LPQP+R L
Sbjct: 73  RAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLPQPNRGL 131

Query: 96  CFTSGVLIEVYMIVMYLHA 114
            F  G  + + M    L +
Sbjct: 132 AFFVGYGVTLSMAYRLLRS 150


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 4.1
 Identities = 7/37 (18%), Positives = 14/37 (37%), Gaps = 3/37 (8%)

Query: 13  PSLTLLPSLIISRAHLNDLENTPGAHLNDLENIPGFL 49
             L  L  L   + ++ D +      +N + +   FL
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILD---FL 552


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 7.9
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 9/49 (18%)

Query: 37  AHLNDLENIPGFL-------IIALLYIMTDPGVMLACWLIRIYTLARFL 78
             L + EN   +L       + A L    D  ++    LI+ Y  AR +
Sbjct: 86  LCLTEFEN--CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132


>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth
          factor, hormone/growth factor complex; HET: 1PE; 2.20A
          {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C*
          2o27_A 2o26_A
          Length = 273

 Score = 24.9 bits (53), Expect = 9.1
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 43 ENIPGFLIIALLYIMTDPGVMLACWL-IRIYTLARFLHTIV 82
           N+P   +I L Y+     +   CW+   +  L+  L  ++
Sbjct: 45 ANLPKDYMITLKYVPGMDVLPSHCWISEMVVQLSDSLTDLL 85


>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO
          trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo
          sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A*
          3leo_A*
          Length = 156

 Score = 24.7 bits (53), Expect = 9.8
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)

Query: 30 DLENTPGAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTIVY 83
          + E    A +N  E  P FL    +  +       A     +Y  AR  +   Y
Sbjct: 45 EFERVYRAQVNCSEYFPLFLATLWVAGIFFHEG-AAALCGLVYLFARLRYFQGY 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.144    0.459 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,034,292
Number of extensions: 114175
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 10
Length of query: 131
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 48
Effective length of database: 4,384,350
Effective search space: 210448800
Effective search space used: 210448800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 52 (24.3 bits)