BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8608
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2H8A|A Chain A, Structure Of Microsomal Glutathione Transferase 1 In
           Complex With Glutathione
          Length = 154

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/71 (46%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 12  AHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALC 71
           AHLNDLENI  FL I LLY ++ P +  A    RI+  AR  HT+ Y +  LPQP+R L 
Sbjct: 74  AHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLPQPNRGLA 132

Query: 72  FTSGVLIEVYM 82
           F  G  + + M
Sbjct: 133 FFVGYGVTLSM 143


>pdb|4AL0|A Chain A, Crystal Structure Of Human Ps-1
 pdb|4AL1|A Chain A, Crystal Structure Of Human Ps-1 Gsh-analog Complex
          Length = 152

 Score = 32.3 bits (72), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 8   KMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPS 67
           + + AH ND+E I  FL +  +Y    P   +A     ++ + R  HTV Y +  L  P 
Sbjct: 67  RCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLRAPI 125

Query: 68  RALCFT 73
           R++ +T
Sbjct: 126 RSVTYT 131


>pdb|3DWW|A Chain A, Electron Crystallographic Structure Of Human Microsomal
           Prostaglandin E Synthase 1
 pdb|3DWW|B Chain B, Electron Crystallographic Structure Of Human Microsomal
           Prostaglandin E Synthase 1
 pdb|3DWW|C Chain C, Electron Crystallographic Structure Of Human Microsomal
           Prostaglandin E Synthase 1
          Length = 158

 Score = 32.3 bits (72), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 8   KMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPS 67
           + + AH ND+E I  FL +  +Y    P   +A     ++ + R  HTV Y +  L  P 
Sbjct: 73  RCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLRAPI 131

Query: 68  RALCFT 73
           R++ +T
Sbjct: 132 RSVTYT 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.337    0.148    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,530,303
Number of Sequences: 62578
Number of extensions: 84366
Number of successful extensions: 236
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 3
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 45 (21.9 bits)