Query psy8608
Match_columns 93
No_of_seqs 114 out of 679
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 23:09:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01124 MAPEG: MAPEG family; 99.9 1.9E-22 4.2E-27 130.6 9.6 84 3-87 45-128 (129)
2 COG3686 Predicted membrane pro 99.8 9.1E-21 2E-25 123.8 9.9 81 5-87 44-124 (125)
3 COG3788 Uncharacterized relati 99.6 7.6E-15 1.6E-19 96.3 10.9 85 4-90 42-126 (131)
4 COG5331 Uncharacterized protei 98.5 4.2E-07 9.2E-12 60.2 6.8 74 9-83 55-128 (139)
5 PF05232 BTP: Bacterial Transm 40.5 75 0.0016 18.5 7.0 48 11-58 7-54 (67)
6 PF10834 DUF2560: Protein of u 35.9 48 0.001 20.4 2.6 21 4-24 57-77 (80)
7 COG2426 Predicted membrane pro 31.0 1.7E+02 0.0037 19.8 5.5 73 2-89 64-136 (142)
8 PF13787 HXXEE: Protein of unk 30.3 1.4E+02 0.003 18.5 5.4 62 15-84 48-109 (116)
9 COG3790 Predicted membrane pro 28.9 84 0.0018 19.9 2.9 28 57-85 8-35 (97)
10 PHA00780 hypothetical protein 26.4 85 0.0019 19.2 2.6 20 5-24 58-77 (80)
11 COG3149 PulM Type II secretory 25.4 1.3E+02 0.0029 21.2 3.8 37 52-89 21-57 (181)
12 PF07225 NDUF_B4: NADH-ubiquin 25.2 75 0.0016 21.0 2.4 33 1-33 56-89 (125)
13 PF11241 DUF3043: Protein of u 24.2 2.3E+02 0.0049 19.8 4.7 27 12-38 73-99 (170)
14 PF15061 DUF4538: Domain of un 23.1 99 0.0022 17.9 2.3 22 66-87 4-25 (58)
15 PF03839 Sec62: Translocation 22.9 2.5E+02 0.0055 20.3 4.9 45 35-82 106-150 (224)
16 PF15176 LRR19-TM: Leucine-ric 22.5 1.2E+02 0.0026 19.5 2.8 27 66-92 13-39 (102)
17 TIGR00867 deg-1 degenerin. Thi 22.2 1.4E+02 0.0029 24.8 3.8 34 53-87 8-41 (601)
18 COG4171 SapC ABC-type antimicr 21.0 3.6E+02 0.0079 20.2 7.0 44 15-58 136-179 (296)
19 KOG1281|consensus 20.0 1.3E+02 0.0027 25.1 3.2 69 11-83 460-528 (586)
No 1
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=99.88 E-value=1.9e-22 Score=130.56 Aligned_cols=84 Identities=32% Similarity=0.392 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q psy8608 3 AAIAVKMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYM 82 (93)
Q Consensus 3 ~~~~~Ra~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~ 82 (93)
+++.+|++|||+|++||+|+|+++++++..+|+++..++.++++|+++|++|+.+| +.+..++.|+++|.+|+.+++.+
T Consensus 45 ~~~~~R~~ra~~N~~E~~~~f~~~~~~~~~~g~~~~~~~~l~~~~~~~R~~y~~~y-~~~~~~~~R~~~~~~~~~~~~~l 123 (129)
T PF01124_consen 45 PPWLERAQRAHQNFLENLPLFLVAVLLAILTGASPSLAALLAWVFVVARVAYAVGY-IAGNIPPLRSLGFLVGLLCLLAL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-T-HHHHHHHHHHHHHHHHHHHHHH-HCSSSCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhhHhhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999 78733789999999999999999
Q ss_pred HHHHH
Q psy8608 83 IVIVI 87 (93)
Q Consensus 83 ~~~~~ 87 (93)
.+..+
T Consensus 124 ~~~~~ 128 (129)
T PF01124_consen 124 ALAAL 128 (129)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98765
No 2
>COG3686 Predicted membrane protein [Function unknown]
Probab=99.85 E-value=9.1e-21 Score=123.84 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=76.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHH
Q psy8608 5 IAVKMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYMIV 84 (93)
Q Consensus 5 ~~~Ra~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~~~ 84 (93)
..+|++|||||.+|..|.|+++++.++++|.+...++++++.|+++|++|.++| +.|. ++.||+.|.+|++++..|.+
T Consensus 44 ~a~RA~~A~~N~fE~fp~FaAavl~a~l~G~~~~~~~~~A~l~i~~RllYi~~Y-la~~-p~lRSlvW~~gmvg~~~lfv 121 (125)
T COG3686 44 LAGRANRAQQNFFETFPAFAAAVLVAHLTGNPSQAANTLAILFIAARLLYIPCY-LADI-PYLRSLVWLGGMVGTGALFV 121 (125)
T ss_pred HHHHHHHHHhhhHHhhHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH-HcCc-HHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999 8998 79999999999999999988
Q ss_pred HHH
Q psy8608 85 IVI 87 (93)
Q Consensus 85 ~~~ 87 (93)
...
T Consensus 122 ~~~ 124 (125)
T COG3686 122 ALA 124 (125)
T ss_pred HHh
Confidence 753
No 3
>COG3788 Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only]
Probab=99.63 E-value=7.6e-15 Score=96.32 Aligned_cols=85 Identities=24% Similarity=0.163 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHH
Q psy8608 4 AIAVKMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYMI 83 (93)
Q Consensus 4 ~~~~Ra~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~~ 83 (93)
+.++|+.|||.|..|.+|.+++++++.+++|..+++.+.++.+++++|++|..+. ... +.|+|..++..++.|.+.+.
T Consensus 42 ~eLqraira~gNatEYIPi~lill~~lemnga~tw~ihilG~il~~gRv~Ha~g~-~~~-~~~~R~~Gm~aTw~~liv~~ 119 (131)
T COG3788 42 SELQRAIRAHGNATEYIPIGLILLLFLEMNGAETWMVHILGIILTAGRVLHAYGL-HHR-LSPWRASGMSATWCALIVMV 119 (131)
T ss_pred HHHHHHHHHcCChHHHhHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH-hcc-CCcchhhhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999997 454 68999999999999999998
Q ss_pred HHHHHHh
Q psy8608 84 VIVIMAY 90 (93)
Q Consensus 84 ~~~~~~~ 90 (93)
+..++..
T Consensus 120 lanl~y~ 126 (131)
T COG3788 120 LANLWYL 126 (131)
T ss_pred HHHHHhh
Confidence 8777653
No 4
>COG5331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.54 E-value=4.2e-07 Score=60.20 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=64.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHH
Q psy8608 9 MVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYMI 83 (93)
Q Consensus 9 a~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~~ 83 (93)
+.+.-.|++|-..+|-.+++....|+.++.....++|+|++.|.+|+..+ .....-+.|+..|+.|+.....+.
T Consensus 55 V~nnl~NqFElPVLF~alcl~L~iT~~~n~vtv~lAWiFVl~Ry~Hs~VH-vtsN~lr~R~p~f~~gfavLa~~w 128 (139)
T COG5331 55 VSNNLANQFELPVLFYALCLLLYITQAVNTVTVNLAWIFVLFRYAHSVVH-VTSNRLRLRQPLFLAGFAVLAVWW 128 (139)
T ss_pred HHHhHHHhhhhhHHHHHHHHHHHhhcccceeeeHHHHHHHHHHHHHHHhe-ehhchhhhhhhHHHHHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999 665546889999999987655543
No 5
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=40.48 E-value=75 Score=18.48 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=43.4
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8608 11 VAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVY 58 (93)
Q Consensus 11 rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y 58 (93)
--|.=.+|...+.+..-+++...|.+...+-.+...+.+.=++++..|
T Consensus 7 i~hai~FE~~~l~~~~P~~a~~~~~~~~~a~~l~v~~s~~a~~wn~if 54 (67)
T PF05232_consen 7 ILHAILFEVGALLISVPLIAWWLGISLWQAGALDVGLSLFAMVWNYIF 54 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368889999999999999999999999998888888888888888888
No 6
>PF10834 DUF2560: Protein of unknown function (DUF2560); InterPro: IPR022544 This entry is represented by Bacteriophage P22, Orf80. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.95 E-value=48 Score=20.36 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhhhhhhHHHHH
Q psy8608 4 AIAVKMVVAHLNDLENIPGFL 24 (93)
Q Consensus 4 ~~~~Ra~rAh~N~lE~~p~F~ 24 (93)
..+.|.+.|-|++-|.+++|-
T Consensus 57 ~~vart~KAIq~~kEAL~LF~ 77 (80)
T PF10834_consen 57 TVVARTIKAIQESKEALDLFD 77 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 357799999999999999984
No 7
>COG2426 Predicted membrane protein [Function unknown]
Probab=31.01 E-value=1.7e+02 Score=19.77 Aligned_cols=73 Identities=11% Similarity=0.007 Sum_probs=42.6
Q ss_pred hhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH
Q psy8608 2 FAAIAVKMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVY 81 (93)
Q Consensus 2 ~~~~~~Ra~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~ 81 (93)
|+...+|++|--.|-.|-.-.--..++.++ |-+.+..+-+. ...| ..+. +-|..+..+.....++
T Consensus 64 Y~~~~~r~~rka~~yVER~G~iGL~iFvAI---PLP~TG~wtga---------LaA~-llgI--~~r~a~~al~~Gg~is 128 (142)
T COG2426 64 YDWLVNRTRRKAKGYVERYGFIGLIIFVAI---PLPGTGAWTGA---------LAAY-LLGI--RERFAFAALSAGGLIS 128 (142)
T ss_pred HHHHHHHHHHhccCcHhhhhhhhhhheeec---cCCCccHhHHH---------HHHH-HHcC--chHHHHHHHHHhhHHH
Confidence 777889999988999998654333333222 22222222211 1256 6666 5577777777666666
Q ss_pred HHHHHHHH
Q psy8608 82 MIVIVIMA 89 (93)
Q Consensus 82 ~~~~~~~~ 89 (93)
.++..+.+
T Consensus 129 ~~vt~l~s 136 (142)
T COG2426 129 GAVTTLPS 136 (142)
T ss_pred HHHHHhhc
Confidence 66655543
No 8
>PF13787 HXXEE: Protein of unknown function with HXXEE motif
Probab=30.28 E-value=1.4e+02 Score=18.48 Aligned_cols=62 Identities=16% Similarity=0.173 Sum_probs=33.4
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHH
Q psy8608 15 NDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYMIV 84 (93)
Q Consensus 15 N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~~~ 84 (93)
|-.|.......+..++...+. ..+....+...=.+|.+.+ +... -..|+ |.-|.++.+.+..
T Consensus 48 ~v~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~H-i~~~-~~~~~--Y~PGl~Ta~ll~l 109 (116)
T PF13787_consen 48 NVAIEFILVLLAAFLAARFGN----YPWWGLAFIAFMFLNLIFH-IIQA-FIFRK--YNPGLVTAILLFL 109 (116)
T ss_pred HHHHHHHHHHHHHHHHHHhcc----hHHHHHHHHHHHHHHHHHH-HHHH-HHhCC--CCcHHHHHHHHHH
Confidence 344444455555555555544 3334445555567888888 5432 12233 7777777766643
No 9
>COG3790 Predicted membrane protein [Function unknown]
Probab=28.92 E-value=84 Score=19.92 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHHHHH
Q psy8608 57 VYGIYVLPQPSRALCFTSGVLIEVYMIVI 85 (93)
Q Consensus 57 ~Y~~~~~~~~~Rs~~~~~g~~~~l~~~~~ 85 (93)
+|.+.++ .|+|.+.+..++....-+.+.
T Consensus 8 ly~i~dK-~~LraLSfvla~~la~~~fwd 35 (97)
T COG3790 8 LYAIMDK-GPLRALSFVLAFLLAGCVFWD 35 (97)
T ss_pred HHHHhcc-ccHHHHHHHHHHHHHHHHhcC
Confidence 4534555 689999988888776666544
No 10
>PHA00780 hypothetical protein
Probab=26.42 E-value=85 Score=19.23 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhhhhHHHHH
Q psy8608 5 IAVKMVVAHLNDLENIPGFL 24 (93)
Q Consensus 5 ~~~Ra~rAh~N~lE~~p~F~ 24 (93)
.+.|++.|-|++-|.+.+|-
T Consensus 58 ~vart~kAIq~akEAL~LF~ 77 (80)
T PHA00780 58 ITTRTIEAVRKSKEALDLFT 77 (80)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 56799999999999998873
No 11
>COG3149 PulM Type II secretory pathway, component PulM [Intracellular trafficking and secretion]
Probab=25.41 E-value=1.3e+02 Score=21.16 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=27.4
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy8608 52 FLHTVVYGIYVLPQPSRALCFTSGVLIEVYMIVIVIMA 89 (93)
Q Consensus 52 v~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~~~~~~~~ 89 (93)
-+|...| +.+.+++-|.+.-..|.+.++.+.+.+++.
T Consensus 21 g~~laa~-w~~~~PREr~mL~g~Ga~L~Lvi~Y~~~Wq 57 (181)
T COG3149 21 GLRLAAR-WRGLPPRERKMLLGGGAFLLLVILYLLIWQ 57 (181)
T ss_pred ccHHHHH-HccCChHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4567788 888767778887777777777777777764
No 12
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=25.18 E-value=75 Score=21.02 Aligned_cols=33 Identities=18% Similarity=0.045 Sum_probs=22.1
Q ss_pred ChhhHHHHHHHHHh-hhhhhHHHHHHHHHHHHHh
Q psy8608 1 MFAAIAVKMVVAHL-NDLENIPGFLIIALLYIMT 33 (93)
Q Consensus 1 ~~~~~~~Ra~rAh~-N~lE~~p~F~~~~ll~~~~ 33 (93)
++|+.++|...++. |..|++=+--=..++...+
T Consensus 56 i~DPAL~Rw~~a~~~~~y~~FRpTPktsllg~~~ 89 (125)
T PF07225_consen 56 IFDPALQRWAYARAVNIYEYFRPTPKTSLLGLGF 89 (125)
T ss_pred cCChHHHHHHHHHHhCcccccccCchHHHHHHHH
Confidence 36889999977777 9999876544444433333
No 13
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=24.15 E-value=2.3e+02 Score=19.76 Aligned_cols=27 Identities=15% Similarity=0.053 Sum_probs=20.4
Q ss_pred HHhhhhhhHHHHHHHHHHHHHhCCCHH
Q psy8608 12 AHLNDLENIPGFLIIALLYIMTDPGVM 38 (93)
Q Consensus 12 Ah~N~lE~~p~F~~~~ll~~~~g~~~~ 38 (93)
+..|.-|.+.++++++++..+..+++.
T Consensus 73 sR~~i~e~fmP~alv~lv~~~v~~~~~ 99 (170)
T PF11241_consen 73 SRRNIGEFFMPVALVLLVLSFVVPSPQ 99 (170)
T ss_pred cccchHHHHHHHHHHHHHHHHHcccHH
Confidence 556888999999988888888833333
No 14
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=23.14 E-value=99 Score=17.85 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q psy8608 66 PSRALCFTSGVLIEVYMIVIVI 87 (93)
Q Consensus 66 ~~Rs~~~~~g~~~~l~~~~~~~ 87 (93)
-+|+..++.|+++.+.++...+
T Consensus 4 g~r~~~~~ggfVg~iG~a~Ypi 25 (58)
T PF15061_consen 4 GWRYALFVGGFVGLIGAALYPI 25 (58)
T ss_pred cccchhhHHHHHHHHHHHHhhh
Confidence 4699999999999888876544
No 15
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=22.86 E-value=2.5e+02 Score=20.32 Aligned_cols=45 Identities=9% Similarity=0.103 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q psy8608 35 PGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYM 82 (93)
Q Consensus 35 ~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~ 82 (93)
+++.+..+.+.+.+++=+ =..+| =-.|...|-.+|.+++.+...+
T Consensus 106 ~~~~~~~l~~~~~~~~v~-a~~lF--PlWP~~~r~gv~YlS~~~lgll 150 (224)
T PF03839_consen 106 PSPLMQYLIGALLLVGVI-AICLF--PLWPRWMRQGVYYLSVGALGLL 150 (224)
T ss_pred CCcHHHHHHHHHHHHHHH-HHHhh--hcChHHHhheeehhHHHHHHHH
Confidence 444444445445554444 22233 1246688999998887654333
No 16
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=22.45 E-value=1.2e+02 Score=19.50 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy8608 66 PSRALCFTSGVLIEVYMIVIVIMAYHN 92 (93)
Q Consensus 66 ~~Rs~~~~~g~~~~l~~~~~~~~~~~~ 92 (93)
..|+.-|++|++....+.-.+|.-++|
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIalaaK 39 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALAAK 39 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHH
Confidence 478899999987776666666655543
No 17
>TIGR00867 deg-1 degenerin. This model is designed from the invertebrate members of the ENaC family.
Probab=22.21 E-value=1.4e+02 Score=24.76 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=25.0
Q ss_pred HHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHH
Q psy8608 53 LHTVVYGIYVLPQPSRALCFTSGVLIEVYMIVIVI 87 (93)
Q Consensus 53 ~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~~~~~~ 87 (93)
+|.+-| +...+.++|.++|.+-+++.+.+++...
T Consensus 8 lHG~~~-i~~~~~~~~R~~W~~~~l~~~~~~~~~~ 41 (601)
T TIGR00867 8 AHGIPM-VATASNGWSRYFWVALFLFCLLMFAYQA 41 (601)
T ss_pred ccchhh-hhcCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 577888 7765457888999999887777764433
No 18
>COG4171 SapC ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=21.04 E-value=3.6e+02 Score=20.16 Aligned_cols=44 Identities=20% Similarity=0.452 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8608 15 NDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVY 58 (93)
Q Consensus 15 N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y 58 (93)
..+-++|.-+.++++..+.||+...+-...+.=+.-|+.|++--
T Consensus 136 Dt~lSiPsLLlAiivvaf~gpsl~namfA~~LAllPrfirsiY~ 179 (296)
T COG4171 136 DTLLSIPSLLLAIIVVAFAGPSLSNAMFAVWLALLPRFIRSIYS 179 (296)
T ss_pred HHHHhhHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988888888888999998643
No 19
>KOG1281|consensus
Probab=20.01 E-value=1.3e+02 Score=25.10 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=40.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHH
Q psy8608 11 VAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYMI 83 (93)
Q Consensus 11 rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~~ 83 (93)
++-+| +|+.|.|.++.++..+.-.-.+-..--+..-++-=+++-++- -.+. +|++ +..-.++.|..++.
T Consensus 460 ~~L~~-l~~~p~~~i~li~~ll~~v~TeF~Sntata~IfiPIl~ela~-~l~~-hply-l~lp~tl~~SfAf~ 528 (586)
T KOG1281|consen 460 NALKP-LESLPVFAILLIFSLLILVVTEFVSNTATASIFIPILAELAE-ALGI-HPLY-LMLPTTLACSFAFM 528 (586)
T ss_pred Hhhhh-cccCChHHHHHHHHHHHHHHHHHhcchhheeehHHhHHHHHH-hcCC-CCce-eehhHHHHHHHHHh
Confidence 34455 999999999887766643222211111223334456666666 3555 5666 66666677777665
Done!