Query psy8608
Match_columns 93
No_of_seqs 114 out of 679
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:09:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dww_A Prostaglandin E synthas 99.9 7E-27 2.4E-31 158.9 10.0 88 3-91 68-155 (158)
2 2h8a_A Microsomal glutathione 99.9 1.8E-24 6.2E-29 145.8 5.7 86 4-90 66-151 (154)
3 3pcv_A Leukotriene C4 synthase 99.8 1.8E-20 6.2E-25 127.1 11.3 82 3-88 43-124 (156)
4 2q7r_A Arachidonate 5-lipoxyge 99.8 1.7E-20 5.7E-25 127.8 6.6 82 3-88 47-128 (161)
5 1lgh_A LH II, B800/850, light 14.9 1.7E+02 0.0057 15.9 3.3 29 30-58 10-38 (56)
6 3dxe_B Amyloid beta A4 protein 14.6 1E+02 0.0035 15.2 1.7 14 7-20 12-25 (35)
7 2qts_A Acid-sensing ION channe 14.2 95 0.0032 22.6 2.2 36 53-89 3-39 (438)
8 2juj_A E3 ubiquitin-protein li 13.4 69 0.0024 17.5 1.0 17 4-20 22-38 (56)
9 3ehu_C Corticoliberin; G prote 13.0 1.2E+02 0.004 13.3 1.5 10 7-16 5-14 (21)
10 2i15_A A05_ORF129, hypothetica 11.4 2.2E+02 0.0075 17.6 3.0 27 9-37 92-118 (135)
No 1
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle, isomerase, membrane, transmembrane; HET: GSH; 3.50A {Homo sapiens}
Probab=99.94 E-value=7e-27 Score=158.92 Aligned_cols=88 Identities=25% Similarity=0.384 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q psy8608 3 AAIAVKMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYM 82 (93)
Q Consensus 3 ~~~~~Ra~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~ 82 (93)
+++++|++|||+|++||+|+|+++++++.++|+++.++..++++|+++|++|+.+| ..+.|+|+|+++|.+|++|++.|
T Consensus 68 ~~~~~Ra~RAh~N~lE~~p~Fl~~~ll~~l~g~~~~~~~~l~~~fv~~Rilh~~~Y-~~~~p~~~Rsl~~~vg~~~~~~m 146 (158)
T 3dww_A 68 DPDVERCLRAHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLRAPIRSVTYTLAQLPCASM 146 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHT-TSSCCGGGGHHHHHHHHSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HcCCCccHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999 78877899999999999999999
Q ss_pred HHHHHHHhh
Q psy8608 83 IVIVIMAYH 91 (93)
Q Consensus 83 ~~~~~~~~~ 91 (93)
+++++..++
T Consensus 147 ~~~~l~~~~ 155 (158)
T 3dww_A 147 ALQILWEAA 155 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
No 2
>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH; 3.20A {Rattus norvegicus} SCOP: f.56.1.1
Probab=99.90 E-value=1.8e-24 Score=145.78 Aligned_cols=86 Identities=38% Similarity=0.552 Sum_probs=78.5
Q ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHH
Q psy8608 4 AIAVKMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYMI 83 (93)
Q Consensus 4 ~~~~Ra~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~~ 83 (93)
++.+|++|||+|++|++|+|+++++++.++|+++.+++.++++|+++|++|+.+| ..+.|++.|+.+|.+|+++++.|+
T Consensus 66 ~~~~Ra~rAh~N~~E~~p~F~~~~ll~~~~g~~~~~~~~l~~~~v~~Ri~h~~~y-~~~~~~~~R~~~~~~~~~~~~~l~ 144 (154)
T 2h8a_A 66 EKVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLPQPNRGLAFFVGYGVTLSMA 144 (154)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTTSCCCSTTHHHHHHHHHHHHHHHHHHH-HSSCSHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999 787755999999999999999999
Q ss_pred HHHHHHh
Q psy8608 84 VIVIMAY 90 (93)
Q Consensus 84 ~~~~~~~ 90 (93)
++++.+.
T Consensus 145 ~~~l~~~ 151 (154)
T 2h8a_A 145 YRLLRSR 151 (154)
T ss_dssp HTC----
T ss_pred HHHHHHH
Confidence 9887654
No 3
>3pcv_A Leukotriene C4 synthase; membrane protein, helix bundle, HOMO trimer, MGST, mapeg, LY; HET: GSH LMT; 1.90A {Homo sapiens} PDB: 2pno_A* 3b29_A* 2uui_A* 2uuh_A* 3hkk_A* 3leo_A*
Probab=99.84 E-value=1.8e-20 Score=127.08 Aligned_cols=82 Identities=15% Similarity=0.025 Sum_probs=73.5
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q psy8608 3 AAIAVKMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYM 82 (93)
Q Consensus 3 ~~~~~Ra~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~ 82 (93)
+++.+|++|||+|++||+|+|+++++++.+++++ .++..++.+|+++|++|+.+| ..+ ++.|+.+|.+++.+++.+
T Consensus 43 ~~~f~Ra~RAH~N~lE~~P~fl~ll~l~~l~~~~-~~a~~lg~~~~~gRily~~gY-~~~--~~~R~~G~~~t~~~~~~L 118 (156)
T 3pcv_A 43 PPEFERVYRAQVNCSEYFPLFLATLWVAGIFFHE-GAAALCGLVYLFARLRYFQGY-ARS--AQLRLAPLYASARALWLL 118 (156)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHH-HHC--GGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHH-hcC--CCccHHHHHHHHHHHHHH
Confidence 3688999999999999999999999999999854 688999999999999999999 666 688999999999999888
Q ss_pred HHHHHH
Q psy8608 83 IVIVIM 88 (93)
Q Consensus 83 ~~~~~~ 88 (93)
.+....
T Consensus 119 ~~~~~~ 124 (156)
T 3pcv_A 119 VALAAL 124 (156)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 4
>2q7r_A Arachidonate 5-lipoxygenase-activating protein; flap, mapeg, membrane protein, lipid transport; HET: 3CS; 4.00A {Homo sapiens} SCOP: f.56.1.1 PDB: 2q7m_A*
Probab=99.82 E-value=1.7e-20 Score=127.76 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHH
Q psy8608 3 AAIAVKMVVAHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALCFTSGVLIEVYM 82 (93)
Q Consensus 3 ~~~~~Ra~rAh~N~lE~~p~F~~~~ll~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y~~~~~~~~~Rs~~~~~g~~~~l~~ 82 (93)
+++.+|++|||+|++||+|+|+++++++.++| ++.+++.++++|+++|++|+.+| .. .| ..|+.+|.+|+++++.|
T Consensus 47 ~~~f~R~~RAh~N~lE~~P~fl~llll~~l~g-~~~~a~~~G~i~l~gRily~~gY-~~-~p-~~R~~G~~~~~l~l~~l 122 (161)
T 2q7r_A 47 TLAFERVYTANQNCVDAYPTFLAVLWSAGLLC-SQVPAAFAGLMYLFVRQKYFVGY-LG-ER-TQSTPGYIFGKRIILFL 122 (161)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHT-CC-SS-SCCCCCSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHH-hC-CC-cchHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999 88899999999999999999999 55 44 48999998888888888
Q ss_pred HHHHHH
Q psy8608 83 IVIVIM 88 (93)
Q Consensus 83 ~~~~~~ 88 (93)
.+..+.
T Consensus 123 ~~~~l~ 128 (161)
T 2q7r_A 123 FLMSVA 128 (161)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 5
>1lgh_A LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=14.95 E-value=1.7e+02 Score=15.93 Aligned_cols=29 Identities=21% Similarity=0.342 Sum_probs=23.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy8608 30 YIMTDPGVMLACWLIRIYTLARFLHTVVY 58 (93)
Q Consensus 30 ~~~~g~~~~~~~~~~~~fv~~Rv~h~~~Y 58 (93)
+...+|.......++.+++++=++|..+-
T Consensus 10 WlvvdP~~~L~~l~~~v~vlAllIH~~lL 38 (56)
T 1lgh_A 10 WLVINPSTWLPVIWIVATVVAIAVHAAVL 38 (56)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCceeHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778888888899999998886
No 6
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=14.57 E-value=1e+02 Score=15.21 Aligned_cols=14 Identities=21% Similarity=0.152 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhhhH
Q psy8608 7 VKMVVAHLNDLENI 20 (93)
Q Consensus 7 ~Ra~rAh~N~lE~~ 20 (93)
.-..+-|+|..||.
T Consensus 12 rh~~~mQ~~GYENP 25 (35)
T 3dxe_B 12 RHLSKMQQNGYENP 25 (35)
T ss_dssp HHHHHHHHTCEECH
T ss_pred HHHHHHHhccCcCc
Confidence 34567788999993
No 7
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=14.17 E-value=95 Score=22.55 Aligned_cols=36 Identities=11% Similarity=0.231 Sum_probs=16.4
Q ss_pred HHHHHHHhccC-CCchhHHHHHHHHHHHHHHHHHHHHH
Q psy8608 53 LHTVVYGIYVL-PQPSRALCFTSGVLIEVYMIVIVIMA 89 (93)
Q Consensus 53 ~h~~~Y~~~~~-~~~~Rs~~~~~g~~~~l~~~~~~~~~ 89 (93)
+|.+-| +... ..+.|.+.|.+-+++.+.+....+..
T Consensus 3 iHG~~~-i~~~~~~~~eR~~W~~~~l~s~~~~~~~~~~ 39 (438)
T 2qts_A 3 LHGISH-IFSYERLSLKRVVWALCFMGSLALLALVCTN 39 (438)
T ss_dssp ---------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcch-hhcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778 6553 23577899998877777766554443
No 8
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=13.45 E-value=69 Score=17.55 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhhhhhhH
Q psy8608 4 AIAVKMVVAHLNDLENI 20 (93)
Q Consensus 4 ~~~~Ra~rAh~N~lE~~ 20 (93)
+++.|+.+.-+|++|..
T Consensus 22 ~da~~AL~ia~Ndv~~A 38 (56)
T 2juj_A 22 QDIQKALVIAQNNIEMA 38 (56)
T ss_dssp HHHHHHHHHTTTCSHHH
T ss_pred HHHHHHHHHhcccHHHH
Confidence 46788999999999964
No 9
>3ehu_C Corticoliberin; G protein-coupled receptor, corticotropin releasing factor, fold, MBP fusion, extracellular domain, sugar transport; HET: BTB MAL; 1.96A {Escherichia coli}
Probab=13.04 E-value=1.2e+02 Score=13.31 Aligned_cols=10 Identities=30% Similarity=0.086 Sum_probs=6.6
Q ss_pred HHHHHHHhhh
Q psy8608 7 VKMVVAHLND 16 (93)
Q Consensus 7 ~Ra~rAh~N~ 16 (93)
+-++.||+|-
T Consensus 5 q~~qQA~~NR 14 (21)
T 3ehu_C 5 QLAQQAHSNR 14 (26)
T ss_pred HHHHHHHHhH
Confidence 4467788873
No 10
>2i15_A A05_ORF129, hypothetical protein Mg296 homolog; structural genomics, MPN423, hypothetical protien, all alpha structure, PSI; 2.40A {Mycoplasma pneumoniae} SCOP: a.291.1.1
Probab=11.41 E-value=2.2e+02 Score=17.63 Aligned_cols=27 Identities=15% Similarity=0.049 Sum_probs=19.4
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhCCCH
Q psy8608 9 MVVAHLNDLENIPGFLIIALLYIMTDPGV 37 (93)
Q Consensus 9 a~rAh~N~lE~~p~F~~~~ll~~~~g~~~ 37 (93)
.+.+-||..|.+.+|+-+. ++-.|.++
T Consensus 92 ~~~ccq~fyeal~~fisal--aitkgi~~ 118 (135)
T 2i15_A 92 VKSCCQSFYEALTLFISAL--AITKGVDV 118 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHcCCCc
Confidence 4678899999999998764 44445443
Done!