RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8608
         (93 letters)



>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle,
           isomerase, membrane, transmembrane; HET: GSH; 3.50A
           {Homo sapiens}
          Length = 158

 Score = 82.4 bits (203), Expect = 7e-22
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 12  AHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALC 71
           AH ND+E I  FL +  +Y    P   +A     ++ + R  HTV Y +  L  P R++ 
Sbjct: 77  AHRNDMETIYPFLFLGFVYSFLGPNPFVAWMHFLVFLVGRVAHTVAY-LGKLRAPIRSVT 135

Query: 72  FTSGVLIEVYMIVIVIMAYHNY 93
           +T   L    M + ++     +
Sbjct: 136 YTLAQLPCASMALQILWEAARH 157


>2h8a_A Microsomal glutathione S-transferase 1; membrane protein; HET: GSH;
           3.20A {Rattus norvegicus} SCOP: f.56.1.1
          Length = 154

 Score = 77.4 bits (190), Expect = 8e-20
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 12  AHLNDLENIPGFLIIALLYIMTDPGVMLACWLIRIYTLARFLHTVVYGIYVLPQPSRALC 71
           AHLNDLENI  FL I LLY ++ P +  A    RI+  AR  HT+ Y +  LPQP+R L 
Sbjct: 74  AHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYHTIAY-LTPLPQPNRGLA 132

Query: 72  FTSGVLIEVYMIVIVIMAYHNY 93
           F  G  + + M   ++ +    
Sbjct: 133 FFVGYGVTLSMAYRLLRSRLYL 154


>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth
          factor, hormone/growth factor complex; HET: 1PE; 2.20A
          {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C*
          2o27_A 2o26_A
          Length = 273

 Score = 25.7 bits (55), Expect = 2.7
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 18 ENIPGFLIIALLYIMTDPGVMLACWL-IRIYTLARFLHTVV 57
           N+P   +I L Y+     +   CW+   +  L+  L  ++
Sbjct: 45 ANLPKDYMITLKYVPGMDVLPSHCWISEMVVQLSDSLTDLL 85


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 3.4
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 9/49 (18%)

Query: 12  AHLNDLENIPGFL-------IIALLYIMTDPGVMLACWLIRIYTLARFL 53
             L + EN   +L       + A L    D  ++    LI+ Y  AR +
Sbjct: 86  LCLTEFEN--CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132


>2i10_A Putative TETR transcriptional regulator; structural genomics,
           APC5890, TETR family, PSI-2, protein ST initiative; HET:
           MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9
           a.121.1.1
          Length = 202

 Score = 24.3 bits (53), Expect = 6.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 48  TLARFLHTVVYGIYVL 63
            LAR++   VYG+ V 
Sbjct: 159 ALARYVMAAVYGLSVE 174


>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop,
          beta-alpha-beta, transferase; 2.40A {Methanocaldococcus
          jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
          Length = 317

 Score = 24.2 bits (53), Expect = 7.4
 Identities = 5/11 (45%), Positives = 6/11 (54%)

Query: 54 HTVVYGIYVLP 64
          H VVYG   + 
Sbjct: 20 HAVVYGYRAIS 30


>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A
           {Streptococcus mutans}
          Length = 197

 Score = 24.0 bits (52), Expect = 8.2
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 43  LIRIYTLARFLHTVVYGIYVLP 64
              +Y      H V +GI V  
Sbjct: 98  YSSLYPFPSGQHIVTFGIAVAE 119


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.337    0.148    0.460 

Gapped
Lambda     K      H
   0.267   0.0517    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,539,637
Number of extensions: 84349
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 15
Length of query: 93
Length of database: 6,701,793
Length adjustment: 60
Effective length of query: 33
Effective length of database: 5,026,533
Effective search space: 165875589
Effective search space used: 165875589
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 51 (23.9 bits)