RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8609
(182 letters)
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 185 bits (471), Expect = 9e-56
Identities = 54/175 (30%), Positives = 96/175 (54%), Gaps = 3/175 (1%)
Query: 10 DEKIVRAYYKYMLDIAVLMGA-DREAAVEELTESLNFEIALANISLPQEERRNATKLYNP 68
+EK++ Y YM+ + L+G D EA ++ + L+FE ALANI++PQE+RR+ +Y+
Sbjct: 174 NEKVLTGYLNYMVQLGKLLGGGDEEAIRPQMQQILDFETALANITIPQEKRRDEELIYHK 233
Query: 69 MKISELQERYPSIPWTEYINTILSPNAQLKDDETIIVTEPEYIHDLEKLLSTTPKRTMAN 128
+ +ELQ P+I W ++NTI P ++ + E I+V + EY+ + L++TT + + N
Sbjct: 234 VTAAELQTLAPAINWLPFLNTIFYP-VEINESEPIVVYDKEYLEQISTLINTTDRCLLNN 292
Query: 129 YVMWRVTAASVGFFTEAIGARRLAFITAVTGVSEEE-ARWKECVGRVKGGFSLAI 182
Y++W + + F + F+ + G + RWK CV + A+
Sbjct: 293 YMIWNLVRKTSSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCVSDTENNLGFAL 347
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease,
hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP:
d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A*
2yb9_A*
Length = 696
Score = 178 bits (454), Expect = 4e-53
Identities = 46/185 (24%), Positives = 82/185 (44%), Gaps = 13/185 (7%)
Query: 11 EKIVRAYYKYMLDIAVLM------GADREAAVEELTESLNFEIALANISLPQEERRNATK 64
++ AY +M+ +A L+ D E+ + + E +AN + E+R +
Sbjct: 185 KEACTAYVDFMISVARLIRQEERLPIDENQLALEMNKVMELEKEIANATAKPEDRNDPML 244
Query: 65 LYNPMKISELQERY------PSIPWTEYINTILSP-NAQLKDDETIIVTEPEYIHDLEKL 117
LYN M ++++Q + W + N I+S N + ++E ++V PEY+ L+ +
Sbjct: 245 LYNKMTLAQIQNNFSLEINGKPFSWLNFTNEIMSTVNISITNEEDVVVYAPEYLTKLKPI 304
Query: 118 LSTTPKRTMANYVMWRVTAASVGFFTEAIGARRLAFITAVTGVSEEEARWKECVGRVKGG 177
L+ R + N + WR V + R AF A+ G + E A W+ C V G
Sbjct: 305 LTKYSARDLQNLMSWRFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGN 364
Query: 178 FSLAI 182
A+
Sbjct: 365 MENAV 369
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex,
pathogenicity, phagosome matura; HET: RDF 211 PGE PG4;
2.60A {Mycobacterium tuberculosis}
Length = 699
Score = 173 bits (441), Expect = 3e-51
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 5/174 (2%)
Query: 11 EKIVRAYYKYMLDIAVLM-GADREAAVEELTESLNFEIALANISLPQEERRNATKLYNPM 69
++ AY ++ + L+ G + + + E LA+ +RR+A YN
Sbjct: 206 AAVLAAYPGHIARMFGLVYGGESRDHAKTADRIVALETKLADAHWDVVKRRDADLGYNLR 265
Query: 70 KISELQERYPSIPWTEYINTILSPNAQLKDDETIIVTEPEYIHDLEKLLSTTPKRTMANY 129
++LQ W ++ + S ++V +P+Y+ L ++ +
Sbjct: 266 TFAQLQTEGAGFDWVSWVTALGSA---PDAMTELVVRQPDYLVTFASLWASVNVEDWKCW 322
Query: 130 VMWRVTAASVGFFTEAIGARRLAFI-TAVTGVSEEEARWKECVGRVKGGFSLAI 182
WR+ A + T A+ A F +TG + RWK V V+ A+
Sbjct: 323 ARWRLIRARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVSLVENLMGDAV 376
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 2e-06
Identities = 31/185 (16%), Positives = 58/185 (31%), Gaps = 64/185 (34%)
Query: 12 KIVRAYYKYMLDIAVLMGADREAAVEELTESLNFEIALANISLPQEERRNATKLY----- 66
++++ Y A +M A R ++ + S F +L
Sbjct: 121 ELIKNYIT-----ARIM-AKRP--FDKKSNSALFRAV----------GEGNAQLVAIFGG 162
Query: 67 --NPMK-ISELQERY----PSI-PWTEYINTILSPNAQLKDDETIIVTEPEYIH--DLEK 116
N EL++ Y + ++ LS + D E + ++ +
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD-----AEKVFTQGLNILE 217
Query: 117 LL---STTPKRT----------------MANYVMWRVTAASVGFFTEAIGARRLAFITAV 157
L S TP + +A+YV VTA +GF + + +
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV---VTAKLLGFTPGELRSY----LKGA 270
Query: 158 TGVSE 162
TG S+
Sbjct: 271 TGHSQ 275
Score = 31.2 bits (70), Expect = 0.21
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 31/96 (32%)
Query: 1 MA----SSTLAGLDEKIVRAYYK-------YMLDIA---------VLMGADREAAVEELT 40
M A ++ ++ + ++++I V G A++ +T
Sbjct: 1809 MIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG--DLRALDTVT 1866
Query: 41 ESLNFEIALANISLPQEERRNATKLYNPMKISELQE 76
LNF I L I + +L + + E++
Sbjct: 1867 NVLNF-IKLQKIDI--------IELQKSLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.078
Identities = 34/242 (14%), Positives = 68/242 (28%), Gaps = 94/242 (38%)
Query: 3 SSTLAGLDEKIVRAYYKYM------LDI--AVLM---GADREAAVEELTESLNFEIALAN 51
S+L L+ R + + I +L ++ V + L + +L
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-HKYSLVE 418
Query: 52 -------ISLP------QEERRNATKL-------YNP----------------------- 68
IS+P + + N L YN
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 69 --MKISELQERYPSIP-------WTE--YINTILSPNAQ------LKDDET----IIVTE 107
+K E ER + E + + NA L+ + I +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDND 538
Query: 108 PEY---IHDLEKLLSTTPKRTMANYVMWRVTAASVGFFTEAIGARRLAFITAVTGVSEEE 164
P+Y ++ + L + N + + +T+ + R+A + + EE
Sbjct: 539 PKYERLVNAILDFL----PKIEENLICSK--------YTDLL---RIALMAEDEAIFEEA 583
Query: 165 AR 166
+
Sbjct: 584 HK 585
Score = 31.7 bits (71), Expect = 0.12
Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 41/153 (26%)
Query: 10 DEKIVRAYY---KYML---DIAV---LMGADR-EAAVEE----LT--ESLNFEIALANIS 53
+ K A+ K +L V L A +++ LT E + + +
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 54 LPQEERRNATKLYNPMKIS---ELQERYPSIPWTEYINTILSPNAQLKDDETII-----V 105
PQ+ R NP ++S E + W + + TII V
Sbjct: 315 -PQDLPREVLTT-NPRRLSIIAESIRDGLAT-WDNW------KHVNCDKLTTIIESSLNV 365
Query: 106 TEPEYIHDLEKLLSTTPK------RTMANYVMW 132
EP + LS P ++ ++W
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLS--LIW 396
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.21
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 15/43 (34%)
Query: 58 ERRNATKLYNPMKISELQERY-P-SIPWTEYINTILSPNAQLK 98
E++ KL +K+ Y S P L+ A ++
Sbjct: 18 EKQALKKLQASLKL------YADDSAP-------ALAIKATME 47
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens
str}
Length = 353
Score = 28.0 bits (63), Expect = 1.6
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 21 MLDIAVLMGADREAAVEELTESLNFEIALANISLPQE 57
+ +A L+G A + + L +LA + + +
Sbjct: 278 LAPLAALVGGRAGAGLFDFAARLGAPSSLAALGVGAD 314
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 28.0 bits (63), Expect = 1.8
Identities = 28/93 (30%), Positives = 35/93 (37%), Gaps = 28/93 (30%)
Query: 71 ISELQERYPSIPWTEYINTILSPNAQL-KDDETIIVTEPEY--IHDLEKLLST------- 120
I ELQ R P I L+ L D I+TEP + L++T
Sbjct: 186 IPELQGRLP-------IRVELTA---LSAADFERILTEPHASLTEQYKALMATEGVNIAF 235
Query: 121 TPK--RTMANYVMWRVTAASVGFFTEAIGARRL 151
T + +A A V TE IGARRL
Sbjct: 236 TTDAVKKIAEA------AFRVNEKTENIGARRL 262
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 28.1 bits (63), Expect = 1.9
Identities = 27/92 (29%), Positives = 35/92 (38%), Gaps = 26/92 (28%)
Query: 71 ISELQERYPSIPWTEYINTILSPNAQLKDDETIIVTEPEY--IHDLEKLLST-------T 121
I ELQ R P I L+ + D I+TEP + L++T T
Sbjct: 320 IPELQGRLP-------IRVELTALS--AADFERILTEPHASLTEQYKALMATEGVNIAFT 370
Query: 122 PK--RTMANYVMWRVTAASVGFFTEAIGARRL 151
+ +A A V TE IGARRL
Sbjct: 371 TDAVKKIAEA------AFRVNEKTENIGARRL 396
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ
PSI, protein structure initiative, midwest center for
struc genomics; 1.90A {Haemophilus influenzae} SCOP:
c.80.1.3
Length = 306
Score = 27.8 bits (61), Expect = 2.0
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 12/103 (11%)
Query: 85 EYINTILSPNAQLKDDETIIVTEPEYIHDLEKLLSTTPKRTMANYVMWRVTAASVGFFTE 144
+ S A++ D + PE + +L S T ++ + N + +
Sbjct: 172 SIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGTAQKMVLNMLTTASMILLGKCYEN 231
Query: 145 AIG----------ARRLAFITAVTGVSEEEARW--KECVGRVK 175
+ AR + + T ++ A E K
Sbjct: 232 LMVDVQASNEKLKARAVRIVMQATDCNKTLAEQTLLEADQNAK 274
>2a3q_A Hypothetical protein; MM.29898, BC004623, 2410015N17RIK, structural
genomics, PROT structure initiative, PSI; 2.32A {Mus
musculus} SCOP: a.204.1.2 PDB: 2q4p_A
Length = 170
Score = 27.1 bits (59), Expect = 2.4
Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 19/112 (16%)
Query: 1 MASSTLAGLDEKIVRAYYKYMLDIAVLMGADREAAVEELTESLNFEIALAN---ISLPQE 57
+A G ++ + +R A EEL++ L + +ALA + LPQ
Sbjct: 58 LALVGEVGELAELFQWKSDTEPGPQAWPPKERAALQEELSDVLIYLVALAARCHVDLPQA 117
Query: 58 ERRNATKLYNPMKISELQERYP-------SIPWTEYINTILSPNAQLKDDET 102
K+ ++RYP + +T+ +S N + +
Sbjct: 118 VIS---------KMDTNRQRYPVHLSRGSACKYTDLPRGTISENQAVGAGDP 160
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine
biosynthesi binding, nucleotide-binding, transferase;
HET: ADP NLG; 2.06A {Streptococcus mutans}
Length = 279
Score = 25.9 bits (58), Expect = 7.4
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 135 TAASVGFFTEAIGARRLAFITAVTGV 160
A A+ A +L +T V GV
Sbjct: 195 YLA--TAVAVALAADKLILMTNVKGV 218
>1f0l_A Diphtheria toxin; bacterial toxin, ADP-ribosylation, transmembrane;
HET: APU; 1.55A {Corynebacterium diphtheriae} SCOP:
b.2.1.1 d.166.1.1 f.1.2.1 PDB: 1ddt_A* 1mdt_A* 1sgk_A
1tox_A* 1xdt_T 4ae0_A 4ae1_A 1dtp_A*
Length = 535
Score = 26.0 bits (56), Expect = 7.9
Identities = 26/136 (19%), Positives = 47/136 (34%), Gaps = 9/136 (6%)
Query: 25 AVLMGADREAAVEELTESLNFEIALANISLPQEERRNATKLYNPMKISELQERYPSI-PW 83
A+ + A + S+ ++ N+ + TK+ L+E P
Sbjct: 177 AMYEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKI------ESLKEHGPIKNKM 230
Query: 84 TEYINTILSPNAQLKDDETIIVTEPEY--IHDLEKLLSTTPKRTMANYVMWRVTAASVGF 141
+E N +S + E T E+ + +L+ + T P ANY W V A V
Sbjct: 231 SESPNKTVSEEKAKQYLEEFHQTALEHPELSELKTVTGTNPVFAGANYAAWAVNVAQVID 290
Query: 142 FTEAIGARRLAFITAV 157
A + ++
Sbjct: 291 SETADNLEKTTAALSI 306
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.370
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,831,382
Number of extensions: 167040
Number of successful extensions: 474
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 32
Length of query: 182
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 94
Effective length of database: 4,244,745
Effective search space: 399006030
Effective search space used: 399006030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.7 bits)