BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8611
(280 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60749|SNX2_HUMAN Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2
Length = 519
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 137/266 (51%), Gaps = 52/266 (19%)
Query: 5 LKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE 64
+ + W E+K ++L+ QL LH SVEAL R++LS +A AKS A++ N+E+
Sbjct: 299 MNESDAW--FEEKQQQFENLDQQLRKLHVSVEALVCHRKELSANTAAFAKSAAMLGNSED 356
Query: 65 HASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQT 124
H ++SR +S L E+ E+ + ++ +A AD + +EL DY+ LIAAVK F R K +Q
Sbjct: 357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQK 416
Query: 125 WQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGT 184
W+ QI L KKREA+ K+ +A + DK QA +E+ E
Sbjct: 417 WEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIRE------------------------ 452
Query: 185 QGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244
WE KV++ + DF IS I++E FE RV++FK ++
Sbjct: 453 ---------------------WEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVII 491
Query: 245 KYLEELMGYQQQEFKDTMVKYLEELM 270
KYLE L+ QQQ ++KY E +
Sbjct: 492 KYLESLVQTQQQ-----LIKYWEAFL 512
>sp|Q9CWK8|SNX2_MOUSE Sorting nexin-2 OS=Mus musculus GN=Snx2 PE=1 SV=2
Length = 519
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 137/266 (51%), Gaps = 52/266 (19%)
Query: 5 LKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE 64
+ + W E+K ++L+ QL LH+SVEAL R++LS +A AKS A++ N+E+
Sbjct: 299 MNESDAW--FEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSED 356
Query: 65 HASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQT 124
H ++SR +S L E+ E+ + ++ +A AD + +EL DY+ LIAAVK F R K +Q
Sbjct: 357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQK 416
Query: 125 WQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGT 184
W+ QI L KKRE + K+ +A + DK QA +E+ E
Sbjct: 417 WEDAQITLLKKRETEAKMMVANKPDKIQQAKNEIRE------------------------ 452
Query: 185 QGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244
WE KV++ + DF IS I++E FE RV++FK ++
Sbjct: 453 ---------------------WEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKAVII 491
Query: 245 KYLEELMGYQQQEFKDTMVKYLEELM 270
KYLE L+ QQQ ++KY E +
Sbjct: 492 KYLESLVQTQQQ-----LIKYWEAFL 512
>sp|Q2TBW7|SNX2_BOVIN Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1
Length = 519
Score = 139 bits (350), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 136/266 (51%), Gaps = 52/266 (19%)
Query: 5 LKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE 64
+ + W E+K ++ + QL LH+SVEAL R++LS +A AKS A++ N+E+
Sbjct: 299 MNESDAW--FEEKQQQFENQDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSED 356
Query: 65 HASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQT 124
H ++SR +S L E+ E+ + ++ +A AD + +EL DY+ LIAAVK F R K +Q
Sbjct: 357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRVKCWQK 416
Query: 125 WQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGT 184
W+ QI L KKRE + K+ +A + DK QA +E+ E
Sbjct: 417 WEDAQITLLKKRETEAKMMVANKPDKIQQAKNEIRE------------------------ 452
Query: 185 QGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244
WE KV++ + DF IS I++E FE RV++FK ++
Sbjct: 453 ---------------------WEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVII 491
Query: 245 KYLEELMGYQQQEFKDTMVKYLEELM 270
KYLE L+ QQQ ++KY E +
Sbjct: 492 KYLESLVQTQQQ-----LIKYWEAFL 512
>sp|Q5R9A9|SNX2_PONAB Sorting nexin-2 OS=Pongo abelii GN=SNX2 PE=2 SV=1
Length = 523
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 138/266 (51%), Gaps = 48/266 (18%)
Query: 5 LKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE 64
+ + W E+K ++L+ QL LH+SVEAL R++LS +A AKS A++ N+E+
Sbjct: 299 MNESDAW--FEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSED 356
Query: 65 HASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQT 124
H ++SR +S L E+ E+ + ++ +A AD + +EL DY+ LIAAVK F R K +Q
Sbjct: 357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQK 416
Query: 125 WQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGT 184
W+ QI L KKREA+ K+ +A + DK QA +E+ E ++
Sbjct: 417 WEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREEIEEWEA----------------- 459
Query: 185 QGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244
KV++ + DF IS I++E FE RV++FK ++
Sbjct: 460 ------------------------KVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVII 495
Query: 245 KYLEELMGYQQQEFKDTMVKYLEELM 270
KYLE L+ QQQ ++KY E +
Sbjct: 496 KYLESLVQTQQQ-----LIKYWEAFL 516
>sp|P0C220|SNX2_MACFA Sorting nexin-2 OS=Macaca fascicularis GN=SNX2 PE=2 SV=1
Length = 523
Score = 135 bits (340), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 138/266 (51%), Gaps = 48/266 (18%)
Query: 5 LKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE 64
+ + W E+K ++L+ QL LH+SVEAL R++LS +A AKS A++ N+E+
Sbjct: 299 MNESDAW--FEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSED 356
Query: 65 HASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQT 124
H ++SR +S L E+ E+ + ++ +A AD + +EL DY+ LIAAVK F R K +Q
Sbjct: 357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQK 416
Query: 125 WQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGT 184
W+ QI L KKREA+ K+ +A + DK QA +E+ E ++
Sbjct: 417 WEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREEIEEWEA----------------- 459
Query: 185 QGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244
KV++ + DF IS I++E FE RV++FK ++
Sbjct: 460 ------------------------KVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVII 495
Query: 245 KYLEELMGYQQQEFKDTMVKYLEELM 270
KYLE L+ QQQ ++KY E +
Sbjct: 496 KYLESLVQTQQQ-----LIKYWEAFL 516
>sp|Q99N27|SNX1_RAT Sorting nexin-1 OS=Rattus norvegicus GN=Snx1 PE=1 SV=1
Length = 522
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 50/253 (19%)
Query: 25 ESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEG 84
E +L LH+ VE L R++L++ +A AKSLA++ ++E++ ++SR +S L E+ E+ E
Sbjct: 320 EQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQ 379
Query: 85 VYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144
++ +A D +LAEL DY+ L+A V+ F R K +Q WQ Q L KKRE++ +L
Sbjct: 380 LHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRESEARLLW 439
Query: 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRV 204
A + DK QA E+TE
Sbjct: 440 ANKPDKLQQAKDEITE-------------------------------------------- 455
Query: 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVK 264
WE +V + + DF IS ++++E FE + ++FK+ ++KYLE L+ QQQ + K
Sbjct: 456 -WESRVTQYERDFERISTVVRKEVTRFEKEKSKDFKNHVIKYLETLLHSQQQ-----LAK 509
Query: 265 YLEELMGYQQQVS 277
Y E + + +S
Sbjct: 510 YWEAFLPEARAIS 522
>sp|Q4R503|SNX1_MACFA Sorting nexin-1 OS=Macaca fascicularis GN=SNX1 PE=2 SV=1
Length = 522
Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 50/253 (19%)
Query: 25 ESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEG 84
E +L LH+ VE L R++L++ +A AKSLA++ ++E++ ++SR +S L E+ E+ E
Sbjct: 320 EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQ 379
Query: 85 VYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144
++ +A D +LAEL DY+ L+A V+ F R K +Q WQ Q L KKREA+ +L
Sbjct: 380 LHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLW 439
Query: 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRV 204
A + DK QA E+ E
Sbjct: 440 ANKPDKLQQAKDEILE-------------------------------------------- 455
Query: 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVK 264
WE +V + + DF IS ++++E FE + ++FK+ ++KYLE L+ QQQ + K
Sbjct: 456 -WESRVTQYERDFERISTVVRKEVMRFEKEKSKDFKNHVIKYLETLLYSQQQ-----LAK 509
Query: 265 YLEELMGYQQQVS 277
Y E + + +S
Sbjct: 510 YWEAFLPEAKAIS 522
>sp|Q13596|SNX1_HUMAN Sorting nexin-1 OS=Homo sapiens GN=SNX1 PE=1 SV=3
Length = 522
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 50/253 (19%)
Query: 25 ESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEG 84
E +L LH+ VE L R++L++ +A AKSLA++ ++E++ ++SR +S L E+ E+ E
Sbjct: 320 EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQ 379
Query: 85 VYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144
++ +A D +LAEL DY+ L+A V+ F R K +Q WQ Q L KKREA+ +L
Sbjct: 380 LHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLW 439
Query: 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRV 204
A + DK QA E+ E
Sbjct: 440 ANKPDKLQQAKDEILE-------------------------------------------- 455
Query: 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVK 264
WE +V + + DF IS ++++E FE + ++FK+ ++KYLE L+ QQQ + K
Sbjct: 456 -WESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQ-----LAK 509
Query: 265 YLEELMGYQQQVS 277
Y E + + +S
Sbjct: 510 YWEAFLPEAKAIS 522
>sp|Q5RFP8|SNX1_PONAB Sorting nexin-1 OS=Pongo abelii GN=SNX1 PE=2 SV=1
Length = 522
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 50/253 (19%)
Query: 25 ESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEG 84
E +L LH+ VE L R++L++ +A AKSLA++ ++E++ ++SR +S L E+ E+ E
Sbjct: 320 EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQ 379
Query: 85 VYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144
++ +A D +LAEL DY+ L+A V+ F R K +Q WQ Q L KKREA+ +L
Sbjct: 380 LHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLW 439
Query: 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRV 204
A + DK QA E+ E
Sbjct: 440 ANKPDKLQQAKDEILE-------------------------------------------- 455
Query: 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVK 264
WE +V + + DF IS ++++E FE + ++FK+ ++KYLE L+ QQQ + K
Sbjct: 456 -WESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQ-----LAK 509
Query: 265 YLEELMGYQQQVS 277
Y E + + +S
Sbjct: 510 YWEAFLPEAKAIS 522
>sp|Q9WV80|SNX1_MOUSE Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1
Length = 522
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 128/253 (50%), Gaps = 50/253 (19%)
Query: 25 ESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEG 84
E +L LH+ VE L R++L++ +A AKSLA++ ++E++ ++SR +S L E+ E+ E
Sbjct: 320 EQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQ 379
Query: 85 VYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144
++ +A D +LAEL DY+ L+A V+ F R K +Q WQ Q L KKRE++ +L
Sbjct: 380 LHQEQANNDSFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKRESEARLLW 439
Query: 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRV 204
A + DK QA E+TE
Sbjct: 440 ANKPDKLQQAKDEITE-------------------------------------------- 455
Query: 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVK 264
WE +V + + DF IS ++++E FE + ++FK+ ++KYLE L+ QQQ + K
Sbjct: 456 -WESRVTQYERDFERISTVVRKEVTRFEKEKSKDFKNHVMKYLETLLHSQQQ-----LAK 509
Query: 265 YLEELMGYQQQVS 277
Y E + + +S
Sbjct: 510 YWEAFLPEAKAIS 522
>sp|Q05B62|SNX1_BOVIN Sorting nexin-1 OS=Bos taurus GN=SNX1 PE=2 SV=1
Length = 522
Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 77/253 (30%), Positives = 128/253 (50%), Gaps = 50/253 (19%)
Query: 25 ESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEG 84
E +L LH+ VE L R++L++ +A AKSLA++ ++E++ ++SR +S L E+ E+ E
Sbjct: 320 EQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQ 379
Query: 85 VYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144
++ +A D +LAEL DY+ L+A V+ F R K +Q WQ Q L KKREA+ +L
Sbjct: 380 LHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQTTLQKKREAEARLLW 439
Query: 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRV 204
A + DK QA E+ V
Sbjct: 440 ANKPDKLQQAKDEI---------------------------------------------V 454
Query: 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVK 264
+WE +V + + DF IS ++++E FE + ++F++ +++YLE L+ QQQ + K
Sbjct: 455 EWESRVTQYERDFERISTVVRKEVIRFEKEKSRDFRNHVIQYLETLLHSQQQ-----LAK 509
Query: 265 YLEELMGYQQQVS 277
Y E + + +S
Sbjct: 510 YWEAFLPEAKAIS 522
>sp|Q9C0U7|VPS5_SCHPO Vacuolar protein sorting-associated protein vps5
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps5 PE=1 SV=1
Length = 576
Score = 37.7 bits (86), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 103/246 (41%), Gaps = 45/246 (18%)
Query: 12 PVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAH-LAKSLALVSNTEEHASVSR 70
P+L + LDSLE+QL ++ ++ L++ +R + H +++ +S + ++S
Sbjct: 364 PILIEAKDTLDSLETQLKSVYHAL-LLSIDQRIQFASAIHDFGEAVGNLSLVDLEPTLSS 422
Query: 71 VVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQI 130
L +L V + D L +Y+ + + K+ F R K++QTWQS
Sbjct: 423 KFDGLSQLQVELRFVQERKVAQDNLTLGTTLEEYIRYVESAKNAFTTRQKLWQTWQSSVQ 482
Query: 131 ILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVS 190
+++ AK +LE + KS Q + + YL
Sbjct: 483 AVSR---AKTQLEKCKKQAKSQQKS-------LPYL------------------------ 508
Query: 191 GGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL 250
E+ K+ K +++F+ + ++KR+ + SRV + K ++ +LE
Sbjct: 509 ---------EEQYEKYRAKAADLEKEFSESTTLLKRDLSSLTTSRVDDLKASVETWLESA 559
Query: 251 MGYQQQ 256
+ Q++
Sbjct: 560 IESQKE 565
>sp|Q8C033|ARHGA_MOUSE Rho guanine nucleotide exchange factor 10 OS=Mus musculus
GN=Arhgef10 PE=1 SV=2
Length = 1345
Score = 34.7 bits (78), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 59/113 (52%), Gaps = 22/113 (19%)
Query: 48 YSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCL 107
++AH +SLA+V+N + H +V G+LY+ + + DLN++ ++ + L
Sbjct: 699 HAAHSPESLAVVANAKPH----KVYMGPGQLYQDLQNLL-----HDLNVVGQISQ----L 745
Query: 108 IAAVKDTFHARGK-IYQTWQS-WQIILNKKREA-------KVKLELAGRSDKS 151
I ++ ++ + + W S Q ++ +K +A +++L+L G+ DKS
Sbjct: 746 IGNLRGSYQNLNQSVAHDWTSGLQRLILRKEDAIRAADRCRIQLQLPGKQDKS 798
>sp|Q9UM54|MYO6_HUMAN Unconventional myosin-VI OS=Homo sapiens GN=MYO6 PE=1 SV=4
Length = 1294
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 28/150 (18%)
Query: 16 DKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTL 75
D+ L L +S+ + +A RR L Y ++ T + ++ +
Sbjct: 1009 DRELALRIAQSEAELISDEAQADLALRRSLDSYP------VSKNDGTRPKMTPEQMAKEM 1062
Query: 76 GELYERTEGVYAAEAGA-----DLNI--LAELFRDYV---C---LIAAVKDTFHARGKIY 122
E R V A +A A DL+ AEL RD + C L+AA ++ FH R K+Y
Sbjct: 1063 SEFLSRGPAVLATKAAAGTKKYDLSKWKYAEL-RDTINTSCDIELLAACREEFHRRLKVY 1121
Query: 123 QTWQSWQIILNKKREAKVKLELAGRSDKSI 152
W+S NKKR E R+ KS+
Sbjct: 1122 HAWKS----KNKKRNT----ETEQRAPKSV 1143
>sp|Q9I8D1|MYO6_CHICK Unconventional myosin-VI OS=Gallus gallus GN=MYO6 PE=1 SV=1
Length = 1276
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 8/46 (17%)
Query: 107 LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSI 152
L+AA ++ FH R K+Y W+S NKKR A E R+ KS+
Sbjct: 1097 LLAACREEFHRRLKVYHAWKS----KNKKRNA----ETEQRAPKSV 1134
>sp|C6DAI4|EFTS_PECCP Elongation factor Ts OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=tsf PE=3 SV=1
Length = 283
Score = 32.0 bits (71), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 48/231 (20%)
Query: 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKS-LALVSNTEEHAS 67
GG+ DK +LD+ A+A D+ V A + +ALV+ E+ +
Sbjct: 87 GGFQAFADK--VLDA-------------AVAGKITDVDVLKAQFEEERVALVAKIGENIN 131
Query: 68 VSRVVSTLGELYERTE-----GVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIY 122
+ RV + GE+ + GV A GAD EL + +AA K F +
Sbjct: 132 IRRVSALEGEVLGNYQHGARIGVLVAAKGAD----EELVKHLAMHVAASKPEF-----VK 182
Query: 123 QTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIK------YLLKTLFNCCPS 176
S +++ +E +V+LE+A +S K + A ++ E R+K L F P+
Sbjct: 183 PEDVSAEVV---DKEYQVQLEIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMDPA 239
Query: 177 DSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAA-ISAMIKR 226
S+ G+ + +D+ + +R + +E+ + DFAA ++AM K+
Sbjct: 240 KSV------GQLLK-EHNADVTN-FIRFEVGEGIEKVETDFAAEVAAMSKQ 282
>sp|Q3ZBM5|SNX5_BOVIN Sorting nexin-5 OS=Bos taurus GN=SNX5 PE=2 SV=1
Length = 404
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 44 DLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRD 103
D +++A SLAL EE + + + + EL+E+ V + + + L EL R
Sbjct: 242 DDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLRKVESRVSSDEDLKLTELLRY 297
Query: 104 YVCLIAAVKDTFHARGKIYQTWQSWQIILNKKR 136
Y+ I A KD + R K +++ L+K R
Sbjct: 298 YMLNIEAAKDLLYRRTKALIDYENSNKALDKAR 330
>sp|Q6D8E2|EFTS_ERWCT Elongation factor Ts OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=tsf PE=3 SV=1
Length = 283
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 48/231 (20%)
Query: 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKS-LALVSNTEEHAS 67
GG+ DK +LD+ A+A D+ V A + +ALV+ E+ +
Sbjct: 87 GGFQAFADK--VLDA-------------AVAGKITDVDVLKAQFEEERVALVAKIGENIN 131
Query: 68 VSRVVSTLGELYERTE-----GVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIY 122
+ RV + GE+ + GV A GAD EL + +AA K F +
Sbjct: 132 IRRVSALEGEVLGNYQHGARIGVLVAAKGAD----EELVKHLAMHVAASKPEF-----VK 182
Query: 123 QTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIK------YLLKTLFNCCPS 176
S +++ +E +V+LE+A +S K + A ++ E R+K L F P+
Sbjct: 183 PEDVSAEVVA---KEYQVQLEIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMDPA 239
Query: 177 DSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAA-ISAMIKR 226
S+ G+ + +D+ + +R + +E+ + DFAA ++AM K+
Sbjct: 240 KSV------GQLLK-EHNADVTN-FIRFEVGEGIEKVETDFAAEVAAMSKQ 282
>sp|B1H267|SNX5_RAT Sorting nexin-5 OS=Rattus norvegicus GN=Snx5 PE=1 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 44 DLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRD 103
D +++A SLAL EE + + + + EL+E+ V + + L EL R
Sbjct: 242 DDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRY 297
Query: 104 YVCLIAAVKDTFHARGKIYQTWQSWQIILNKKR 136
Y+ I A KD + R K +++ L+K R
Sbjct: 298 YMLNIEAAKDLLYRRTKALIDYENSNKALDKAR 330
>sp|A0JP85|CNOT1_XENTR CCR4-NOT transcription complex subunit 1 OS=Xenopus tropicalis
GN=cnot1 PE=2 SV=1
Length = 2388
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 30 HLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAE 89
HLH+ AL++ + ++ S L +++A+ N+ + ++ LG L + EG+ A
Sbjct: 1634 HLHAIPPALSMNPQSQALRS--LLEAVAVARNSRD------AIAALGLLQKAVEGLLDAT 1685
Query: 90 AGADLNILAELFRDYVCLIAAVKDTFHARGKIY-QTWQSWQI 130
+GAD ++L ++ ++ A++D G+ Y W + QI
Sbjct: 1686 SGADADLLLRYRECHLLVLKALQD-----GRAYGSPWCNKQI 1722
>sp|Q9Y5X3|SNX5_HUMAN Sorting nexin-5 OS=Homo sapiens GN=SNX5 PE=1 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 44 DLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRD 103
D +++A SLAL EE + + + + EL+E+ V + + L EL R
Sbjct: 242 DDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRY 297
Query: 104 YVCLIAAVKDTFHARGKIYQTWQSWQIILNKKR 136
Y+ I A KD + R K +++ L+K R
Sbjct: 298 YMLNIEAAKDLLYRRTKALIDYENSNKALDKAR 330
>sp|Q9D8U8|SNX5_MOUSE Sorting nexin-5 OS=Mus musculus GN=Snx5 PE=1 SV=1
Length = 404
Score = 31.6 bits (70), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 44 DLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRD 103
D +++A SLAL EE + + + + EL+E+ V + + L EL R
Sbjct: 242 DDYIHTAACLHSLAL----EEPTVIKKYLLKVAELFEKLRKVEGRVSSDEDLKLTELLRY 297
Query: 104 YVCLIAAVKDTFHARGKIYQTWQSWQIILNKKR 136
Y+ I A KD + R K +++ L+K R
Sbjct: 298 YMLNIEAAKDLLYRRTKALIDYENSNKALDKAR 330
>sp|Q2IHQ1|ATPG_ANADE ATP synthase gamma chain OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=atpG PE=3 SV=1
Length = 289
Score = 31.6 bits (70), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 180 LIVGTQGRTVSGGFRSDIC-----------DEQVRVKWEHKVERCQEDFAAISAMIKREY 228
++V T R ++GGF S+IC D R+ ++ +E F A + I+R+Y
Sbjct: 81 VVVVTSDRGLAGGFNSNICRFVQRFLTENADRFERIALATVGKKGREYFKARNLPIRRDY 140
Query: 229 AGFEAS 234
G A+
Sbjct: 141 TGIHAN 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,382,229
Number of Sequences: 539616
Number of extensions: 3429477
Number of successful extensions: 11455
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 11404
Number of HSP's gapped (non-prelim): 78
length of query: 280
length of database: 191,569,459
effective HSP length: 116
effective length of query: 164
effective length of database: 128,974,003
effective search space: 21151736492
effective search space used: 21151736492
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)