Query psy8611
Match_columns 280
No_of_seqs 105 out of 329
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 23:14:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07665 BAR_SNX1 The Bin/Amphi 100.0 1.4E-53 3E-58 382.2 31.1 223 2-274 12-234 (234)
2 cd07664 BAR_SNX2 The Bin/Amphi 100.0 3E-52 6.5E-57 374.3 31.3 223 2-274 12-234 (234)
3 cd07623 BAR_SNX1_2 The Bin/Amp 100.0 4.8E-51 1E-55 365.0 31.5 223 2-274 2-224 (224)
4 cd07627 BAR_Vps5p The Bin/Amph 100.0 1.9E-46 4.2E-51 333.5 30.9 213 9-271 1-215 (216)
5 PF09325 Vps5: Vps5 C terminal 100.0 9.6E-44 2.1E-48 317.4 29.8 220 3-272 15-236 (236)
6 cd07621 BAR_SNX5_6 The Bin/Amp 100.0 1.5E-38 3.2E-43 282.1 28.9 201 6-273 18-218 (219)
7 cd07662 BAR_SNX6 The Bin/Amphi 100.0 8.6E-38 1.9E-42 275.1 27.7 200 7-273 18-217 (218)
8 cd07663 BAR_SNX5 The Bin/Amphi 100.0 1.4E-37 3.1E-42 275.0 29.0 200 7-273 18-217 (218)
9 cd07630 BAR_SNX_like The Bin/A 100.0 3E-37 6.5E-42 271.0 28.5 194 9-270 1-196 (198)
10 cd07624 BAR_SNX7_30 The Bin/Am 100.0 3E-37 6.5E-42 271.6 27.5 198 1-272 3-200 (200)
11 cd07596 BAR_SNX The Bin/Amphip 100.0 3.1E-35 6.7E-40 257.6 30.0 214 9-272 1-218 (218)
12 cd07625 BAR_Vps17p The Bin/Amp 100.0 1.6E-33 3.5E-38 251.9 30.1 216 7-272 13-230 (230)
13 cd07666 BAR_SNX7 The Bin/Amphi 100.0 1.7E-31 3.7E-36 240.5 28.0 197 4-271 45-242 (243)
14 cd07667 BAR_SNX30 The Bin/Amph 100.0 1.5E-30 3.2E-35 233.3 26.6 199 2-271 41-239 (240)
15 cd07628 BAR_Atg24p The Bin/Amp 100.0 3.6E-30 7.8E-35 224.2 26.4 184 9-271 1-184 (185)
16 cd07622 BAR_SNX4 The Bin/Amphi 100.0 1.1E-29 2.3E-34 223.8 28.2 196 1-271 3-198 (201)
17 cd07598 BAR_FAM92 The Bin/Amph 100.0 7E-28 1.5E-32 213.6 29.8 204 11-277 3-206 (211)
18 cd07626 BAR_SNX9_like The Bin/ 100.0 4.4E-26 9.5E-31 200.1 27.0 189 10-271 2-197 (199)
19 cd07629 BAR_Atg20p The Bin/Amp 99.9 4.6E-24 1E-28 186.1 26.2 183 9-270 1-185 (187)
20 KOG2273|consensus 99.9 1.1E-23 2.4E-28 208.1 29.7 223 3-271 265-496 (503)
21 PF10456 BAR_3_WASP_bdg: WASP- 99.9 2.2E-21 4.8E-26 174.5 24.2 192 7-271 36-234 (237)
22 cd07670 BAR_SNX18 The Bin/Amph 99.9 9.8E-21 2.1E-25 164.7 21.6 190 7-271 7-205 (207)
23 cd07668 BAR_SNX9 The Bin/Amphi 99.9 1.7E-20 3.6E-25 163.8 22.0 191 7-272 7-206 (210)
24 cd07669 BAR_SNX33 The Bin/Amph 99.9 3E-20 6.6E-25 162.1 21.2 190 7-271 7-205 (207)
25 KOG1660|consensus 99.8 4.9E-19 1.1E-23 163.7 18.1 204 5-275 195-398 (399)
26 cd07597 BAR_SNX8 The Bin/Amphi 99.7 3E-15 6.5E-20 135.9 26.9 214 11-273 21-246 (246)
27 cd07307 BAR The Bin/Amphiphysi 99.7 5.4E-14 1.2E-18 118.9 25.2 188 21-271 2-193 (194)
28 PF03114 BAR: BAR domain; Int 99.5 2.6E-11 5.7E-16 105.8 25.3 198 10-274 24-229 (229)
29 smart00721 BAR BAR domain. 99.3 3.2E-09 6.9E-14 94.4 26.8 204 10-274 25-238 (239)
30 cd07590 BAR_Bin3 The Bin/Amphi 99.2 3.5E-08 7.6E-13 88.6 28.3 208 8-275 7-214 (225)
31 PF06730 FAM92: FAM92 protein; 99.2 7.4E-08 1.6E-12 85.5 27.6 207 8-277 7-213 (219)
32 cd07588 BAR_Amphiphysin The Bi 99.1 1.1E-07 2.4E-12 84.6 26.8 200 9-275 9-208 (211)
33 cd07591 BAR_Rvs161p The Bin/Am 99.1 2.7E-07 5.9E-12 82.8 27.7 202 9-272 8-210 (224)
34 cd07599 BAR_Rvs167p The Bin/Am 99.0 8.3E-07 1.8E-11 78.9 27.4 192 11-256 1-204 (216)
35 cd07611 BAR_Amphiphysin_I_II T 99.0 1.4E-06 3E-11 77.4 26.7 199 9-275 9-208 (211)
36 cd07612 BAR_Bin2 The Bin/Amphi 99.0 1.2E-06 2.7E-11 77.8 25.6 200 9-275 9-208 (211)
37 cd07604 BAR_ASAPs The Bin/Amph 98.8 9.6E-06 2.1E-10 72.5 27.4 201 19-275 9-214 (215)
38 KOG2528|consensus 98.8 4.4E-08 9.5E-13 94.1 12.3 123 7-139 325-454 (490)
39 cd07601 BAR_APPL The Bin/Amphi 98.8 9.9E-06 2.1E-10 72.3 25.7 195 19-276 9-210 (215)
40 cd07660 BAR_Arfaptin The Bin/A 98.7 1.6E-05 3.5E-10 70.1 25.3 194 11-271 1-199 (201)
41 PF06456 Arfaptin: Arfaptin-li 98.7 3.4E-05 7.4E-10 69.6 27.5 191 8-256 29-224 (229)
42 cd07593 BAR_MUG137_fungi The B 98.7 6.5E-06 1.4E-10 73.5 22.5 195 9-273 4-208 (215)
43 cd00011 BAR_Arfaptin_like The 98.7 3.5E-05 7.7E-10 68.1 26.5 195 11-269 1-200 (203)
44 cd07603 BAR_ACAPs The Bin/Amph 98.7 2.8E-05 6.1E-10 68.8 25.9 193 15-272 5-199 (200)
45 cd07637 BAR_ACAP3 The Bin/Amph 98.7 4.2E-05 9.1E-10 67.6 25.7 192 16-272 6-199 (200)
46 cd07606 BAR_SFC_plant The Bin/ 98.7 3.3E-05 7.3E-10 68.4 25.0 190 18-271 7-201 (202)
47 cd07639 BAR_ACAP1 The Bin/Amph 98.7 4.8E-05 1E-09 67.2 25.5 192 16-272 6-199 (200)
48 cd07589 BAR_DNMBP The Bin/Amph 98.6 6.3E-05 1.4E-09 66.2 25.1 178 10-256 3-181 (195)
49 KOG3771|consensus 98.6 3E-05 6.5E-10 75.4 24.0 199 9-274 27-225 (460)
50 cd07602 BAR_RhoGAP_OPHN1-like 98.6 7.3E-05 1.6E-09 66.4 24.2 191 18-272 8-206 (207)
51 COG5391 Phox homology (PX) dom 98.6 6.2E-05 1.4E-09 75.3 26.3 80 190-274 436-522 (524)
52 cd07595 BAR_RhoGAP_Rich-like T 98.6 3.6E-05 7.7E-10 70.1 22.4 203 10-275 13-226 (244)
53 cd07638 BAR_ACAP2 The Bin/Amph 98.5 0.00022 4.8E-09 63.1 25.5 193 15-272 5-199 (200)
54 cd07615 BAR_Endophilin_A3 The 98.5 6E-05 1.3E-09 67.7 22.1 191 9-274 4-217 (223)
55 cd07592 BAR_Endophilin_A The B 98.4 8.5E-05 1.8E-09 66.8 21.2 191 9-274 4-217 (223)
56 cd07594 BAR_Endophilin_B The B 98.4 0.00011 2.4E-09 66.3 20.8 198 9-273 14-229 (229)
57 cd07614 BAR_Endophilin_A2 The 98.4 0.00013 2.8E-09 65.6 20.7 191 9-274 4-217 (223)
58 cd07618 BAR_Rich1 The Bin/Amph 98.4 0.0007 1.5E-08 61.7 25.5 200 11-276 14-229 (246)
59 cd07659 BAR_PICK1 The Bin/Amph 98.3 0.0018 3.8E-08 57.4 26.2 192 13-266 3-207 (215)
60 cd07613 BAR_Endophilin_A1 The 98.3 7.7E-05 1.7E-09 67.0 17.5 150 50-274 67-217 (223)
61 cd07642 BAR_ASAP2 The Bin/Amph 98.3 0.0022 4.8E-08 57.1 25.7 194 26-275 16-214 (215)
62 cd07632 BAR_APPL2 The Bin/Amph 98.2 0.0026 5.6E-08 56.5 25.8 191 24-275 14-212 (215)
63 cd07641 BAR_ASAP1 The Bin/Amph 98.2 0.0032 6.9E-08 56.0 25.9 200 19-274 9-213 (215)
64 cd07636 BAR_GRAF The Bin/Amphi 98.2 0.0017 3.7E-08 57.7 24.0 188 20-271 10-205 (207)
65 cd07619 BAR_Rich2 The Bin/Amph 98.2 0.0039 8.6E-08 56.9 25.8 204 11-276 14-231 (248)
66 cd07634 BAR_GAP10-like The Bin 98.1 0.0019 4.1E-08 57.4 22.9 180 28-271 18-205 (207)
67 cd07631 BAR_APPL1 The Bin/Amph 98.1 0.006 1.3E-07 54.4 27.8 199 14-274 7-211 (215)
68 cd07633 BAR_OPHN1 The Bin/Amph 98.0 0.0062 1.3E-07 53.9 23.9 188 19-271 9-205 (207)
69 cd07617 BAR_Endophilin_B2 The 98.0 0.0023 5.1E-08 57.3 21.1 188 9-272 14-219 (220)
70 cd07600 BAR_Gvp36 The Bin/Amph 98.0 0.0017 3.6E-08 59.2 20.4 140 65-272 102-241 (242)
71 cd07635 BAR_GRAF2 The Bin/Amph 98.0 0.0069 1.5E-07 53.9 23.7 63 205-272 144-206 (207)
72 cd07616 BAR_Endophilin_B1 The 97.9 0.01 2.2E-07 53.6 23.8 197 9-272 14-228 (229)
73 PF13805 Pil1: Eisosome compon 97.7 0.042 9.1E-07 50.7 24.6 87 33-142 57-150 (271)
74 cd07640 BAR_ASAP3 The Bin/Amph 97.6 0.043 9.2E-07 48.5 23.4 190 28-275 18-212 (213)
75 cd07648 F-BAR_FCHO The F-BAR ( 97.4 0.088 1.9E-06 48.0 28.4 63 210-277 173-235 (261)
76 PF10455 BAR_2: Bin/amphiphysi 97.3 0.058 1.3E-06 50.4 19.7 144 63-274 145-288 (289)
77 cd07620 BAR_SH3BP1 The Bin/Amp 97.2 0.15 3.4E-06 46.6 26.0 64 206-275 176-239 (257)
78 PF08397 IMD: IRSp53/MIM homol 97.1 0.17 3.7E-06 45.1 29.5 119 20-144 4-130 (219)
79 cd07674 F-BAR_FCHO1 The F-BAR 96.9 0.36 7.9E-06 44.2 29.1 68 205-277 168-235 (261)
80 cd07649 F-BAR_GAS7 The F-BAR ( 96.7 0.46 1E-05 43.0 25.9 167 37-252 26-219 (233)
81 KOG0521|consensus 96.7 0.4 8.7E-06 50.6 21.6 196 17-276 26-223 (785)
82 cd07605 I-BAR_IMD Inverse (I)- 96.6 0.52 1.1E-05 42.5 28.4 200 12-274 5-220 (223)
83 KOG3725|consensus 96.5 0.34 7.3E-06 44.6 17.4 154 63-273 106-262 (375)
84 KOG3651|consensus 96.4 0.65 1.4E-05 43.7 18.9 201 15-268 135-339 (429)
85 cd07673 F-BAR_FCHO2 The F-BAR 96.2 1 2.2E-05 41.6 29.9 196 34-277 30-242 (269)
86 cd07661 BAR_ICA69 The Bin/Amph 95.9 1.1 2.3E-05 39.7 26.3 195 11-269 1-200 (204)
87 cd07658 F-BAR_NOSTRIN The F-BA 95.9 1.3 2.9E-05 40.0 27.7 71 36-107 25-99 (239)
88 KOG3876|consensus 95.5 2.1 4.6E-05 39.5 23.3 203 8-273 121-324 (341)
89 cd07653 F-BAR_CIP4-like The F- 95.2 2.3 5E-05 38.3 29.1 76 67-142 62-138 (251)
90 cd07643 I-BAR_IMD_MIM Inverse 94.8 3 6.6E-05 37.7 25.4 177 31-256 27-209 (231)
91 KOG1118|consensus 94.5 4.5 9.7E-05 38.2 19.1 94 10-103 24-140 (366)
92 cd07650 F-BAR_Syp1p_like The F 94.3 3.8 8.3E-05 36.8 26.3 65 207-276 145-209 (228)
93 KOG1451|consensus 94.1 7.8 0.00017 39.7 21.9 71 200-275 156-226 (812)
94 cd07651 F-BAR_PombeCdc15_like 93.4 5.6 0.00012 35.6 28.2 123 10-140 3-131 (236)
95 cd07655 F-BAR_PACSIN The F-BAR 92.1 9.2 0.0002 34.9 27.0 35 215-249 203-237 (258)
96 cd07647 F-BAR_PSTPIP The F-BAR 89.9 14 0.00031 33.1 26.6 39 211-249 184-222 (239)
97 cd07610 FCH_F-BAR The Extended 87.1 17 0.00038 30.8 26.0 64 37-103 21-90 (191)
98 cd07675 F-BAR_FNBP1L The F-BAR 85.8 29 0.00062 31.9 24.7 49 217-270 200-248 (252)
99 PF10168 Nup88: Nuclear pore c 84.5 56 0.0012 34.5 16.6 40 103-142 551-591 (717)
100 cd07671 F-BAR_PSTPIP1 The F-BA 83.6 34 0.00074 31.0 25.1 26 223-248 196-221 (242)
101 cd07629 BAR_Atg20p The Bin/Amp 83.2 30 0.00066 30.1 12.6 109 20-139 5-114 (187)
102 PF06160 EzrA: Septation ring 76.6 93 0.002 31.7 24.6 194 6-249 95-317 (560)
103 KOG0994|consensus 76.5 1.4E+02 0.003 33.6 16.5 25 14-38 1456-1480(1758)
104 cd07676 F-BAR_FBP17 The F-BAR 76.4 62 0.0013 29.6 29.8 51 215-270 199-249 (253)
105 cd07681 F-BAR_PACSIN3 The F-BA 76.1 65 0.0014 29.7 26.5 69 32-103 21-97 (258)
106 TIGR02302 aProt_lowcomp conser 75.4 1.3E+02 0.0027 32.6 17.3 154 8-177 448-610 (851)
107 KOG0933|consensus 74.4 1.4E+02 0.0031 32.8 20.9 111 10-125 682-792 (1174)
108 KOG4460|consensus 73.3 1.2E+02 0.0025 31.3 15.6 51 205-256 620-676 (741)
109 PRK04778 septation ring format 72.8 1.2E+02 0.0025 31.1 22.8 189 6-233 99-307 (569)
110 cd07657 F-BAR_Fes_Fer The F-BA 72.6 74 0.0016 28.8 26.6 74 69-142 64-138 (237)
111 PF13758 Prefoldin_3: Prefoldi 72.5 35 0.00077 26.9 8.2 85 120-227 2-94 (99)
112 KOG3691|consensus 71.9 1.5E+02 0.0033 32.0 16.7 105 56-160 36-141 (982)
113 cd07646 I-BAR_IMD_IRSp53 Inver 71.0 83 0.0018 28.6 27.7 116 21-136 17-141 (232)
114 cd07667 BAR_SNX30 The Bin/Amph 69.5 91 0.002 28.5 24.3 30 106-144 133-162 (240)
115 cd07680 F-BAR_PACSIN1 The F-BA 69.5 93 0.002 28.6 26.5 65 35-102 24-96 (258)
116 PF04100 Vps53_N: Vps53-like, 69.4 1.1E+02 0.0025 29.6 22.1 29 207-235 197-225 (383)
117 PF11887 DUF3407: Protein of u 68.5 97 0.0021 28.4 14.1 76 11-88 41-116 (267)
118 cd07628 BAR_Atg24p The Bin/Amp 67.9 81 0.0017 27.3 23.9 108 20-140 5-113 (185)
119 PF11559 ADIP: Afadin- and alp 67.4 71 0.0015 26.4 12.1 44 101-144 30-73 (151)
120 cd07596 BAR_SNX The Bin/Amphip 66.7 81 0.0017 26.8 26.7 107 20-139 5-115 (218)
121 KOG2180|consensus 61.6 2.2E+02 0.0048 30.2 22.1 40 206-245 211-251 (793)
122 KOG0977|consensus 57.4 2.3E+02 0.005 29.0 24.1 43 199-241 240-282 (546)
123 PF04108 APG17: Autophagy prot 57.3 2E+02 0.0043 28.2 17.4 99 12-116 255-353 (412)
124 cd07672 F-BAR_PSTPIP2 The F-BA 57.0 1.5E+02 0.0033 26.8 27.3 52 37-92 26-83 (240)
125 cd07609 BAR_SIP3_fungi The Bin 55.7 1.5E+02 0.0033 26.4 19.5 89 70-165 63-152 (214)
126 TIGR00996 Mtu_fam_mce virulenc 55.3 1.7E+02 0.0036 26.7 12.3 79 28-116 173-251 (291)
127 cd07657 F-BAR_Fes_Fer The F-BA 55.0 1.6E+02 0.0035 26.5 25.6 31 218-248 200-230 (237)
128 TIGR00606 rad50 rad50. This fa 53.5 3.8E+02 0.0082 30.3 25.0 174 19-249 970-1152(1311)
129 cd07624 BAR_SNX7_30 The Bin/Am 52.0 1.6E+02 0.0035 25.6 22.9 106 21-140 16-122 (200)
130 PF04048 Sec8_exocyst: Sec8 ex 51.1 1.4E+02 0.003 24.6 14.5 93 49-143 21-113 (142)
131 PRK04863 mukB cell division pr 50.8 4.5E+02 0.0098 30.4 19.9 172 6-226 301-474 (1486)
132 PF12128 DUF3584: Protein of u 50.4 4.1E+02 0.0089 29.8 29.3 37 202-238 367-403 (1201)
133 PF13779 DUF4175: Domain of un 49.8 3.7E+02 0.0079 29.1 16.9 147 8-177 417-580 (820)
134 PF06730 FAM92: FAM92 protein; 48.7 2.1E+02 0.0045 25.9 16.0 77 21-113 6-82 (219)
135 PF06320 GCN5L1: GCN5-like pro 48.4 1.5E+02 0.0032 24.1 9.3 76 21-103 35-110 (121)
136 COG5185 HEC1 Protein involved 47.4 3.2E+02 0.0069 27.7 20.5 56 200-256 557-612 (622)
137 PF05377 FlaC_arch: Flagella a 47.2 87 0.0019 22.1 5.7 39 21-59 2-40 (55)
138 cd07635 BAR_GRAF2 The Bin/Amph 47.0 2.1E+02 0.0046 25.5 23.0 69 20-88 3-85 (207)
139 cd07307 BAR The Bin/Amphiphysi 46.6 1.6E+02 0.0034 23.9 22.9 45 15-59 3-47 (194)
140 KOG4796|consensus 44.4 1.8E+02 0.004 29.7 9.6 50 215-269 547-596 (604)
141 cd07645 I-BAR_IMD_BAIAP2L1 Inv 43.7 2.5E+02 0.0054 25.4 27.7 119 20-144 14-140 (226)
142 TIGR00634 recN DNA repair prot 43.3 3.7E+02 0.008 27.3 18.0 23 202-224 347-369 (563)
143 COG0497 RecN ATPase involved i 42.3 4E+02 0.0088 27.4 16.1 165 70-269 114-337 (557)
144 cd07679 F-BAR_PACSIN2 The F-BA 39.0 3.2E+02 0.0069 25.3 27.1 70 31-103 20-97 (258)
145 COG1256 FlgK Flagellar hook-as 38.6 4.4E+02 0.0096 27.0 11.7 47 18-66 84-130 (552)
146 KOG1925|consensus 38.4 4.6E+02 0.0099 26.9 11.9 57 212-273 561-617 (817)
147 PF09325 Vps5: Vps5 C terminal 38.4 2.7E+02 0.0058 24.2 25.8 44 18-61 23-66 (236)
148 PF11887 DUF3407: Protein of u 37.8 3.2E+02 0.007 25.0 14.8 82 27-118 36-117 (267)
149 PF07083 DUF1351: Protein of u 36.7 3E+02 0.0066 24.4 11.7 51 205-255 75-125 (215)
150 PF08700 Vps51: Vps51/Vps67; 35.9 1.7E+02 0.0038 21.3 7.2 39 42-80 43-82 (87)
151 PF08653 DASH_Dam1: DASH compl 35.4 1.6E+02 0.0035 20.9 5.9 27 13-39 6-32 (58)
152 KOG4559|consensus 34.2 1.5E+02 0.0032 23.7 5.8 49 222-279 53-101 (120)
153 cd07686 F-BAR_Fer The F-BAR (F 34.0 3.6E+02 0.0078 24.5 25.6 28 221-248 200-227 (234)
154 PF08397 IMD: IRSp53/MIM homol 33.9 3.3E+02 0.0071 24.0 24.4 58 211-273 151-208 (219)
155 PF08317 Spc7: Spc7 kinetochor 33.4 4.1E+02 0.009 24.9 20.0 10 24-33 120-129 (325)
156 COG1463 Ttg2C ABC-type transpo 31.9 4.6E+02 0.0099 25.0 12.9 40 22-61 176-215 (359)
157 cd07622 BAR_SNX4 The Bin/Amphi 31.4 3.6E+02 0.0078 23.7 25.2 104 23-140 18-121 (201)
158 PF04782 DUF632: Protein of un 31.4 4.6E+02 0.01 24.8 12.4 44 205-255 140-183 (312)
159 smart00806 AIP3 Actin interact 30.3 5.6E+02 0.012 25.5 20.2 119 127-249 283-405 (426)
160 PF08285 DPM3: Dolichol-phosph 29.7 51 0.0011 25.5 2.6 31 163-218 49-85 (91)
161 cd07627 BAR_Vps5p The Bin/Amph 29.5 3.9E+02 0.0085 23.4 25.7 64 198-273 140-203 (216)
162 PRK14155 heat shock protein Gr 29.1 4.2E+02 0.009 23.6 8.7 49 201-249 27-75 (208)
163 PF12128 DUF3584: Protein of u 29.0 8.7E+02 0.019 27.3 22.0 41 20-60 772-812 (1201)
164 PF02787 CPSase_L_D3: Carbamoy 29.0 87 0.0019 25.4 4.0 25 7-31 32-56 (123)
165 PF10280 Med11: Mediator compl 28.6 3.1E+02 0.0066 21.9 8.6 29 96-124 45-73 (117)
166 cd07597 BAR_SNX8 The Bin/Amphi 28.4 4.4E+02 0.0096 23.7 11.7 34 104-137 107-140 (246)
167 PRK01026 tetrahydromethanopter 26.8 2.1E+02 0.0046 21.5 5.3 34 1-34 4-37 (77)
168 PF11471 Sugarporin_N: Maltopo 26.4 1.6E+02 0.0036 20.9 4.5 30 196-225 27-56 (60)
169 PRK14163 heat shock protein Gr 26.3 4.8E+02 0.01 23.4 8.7 48 202-249 55-102 (214)
170 TIGR00996 Mtu_fam_mce virulenc 26.1 5E+02 0.011 23.5 14.3 39 43-83 167-205 (291)
171 PF07200 Mod_r: Modifier of ru 25.9 3.7E+02 0.0079 21.9 10.0 37 68-104 97-133 (150)
172 KOG1656|consensus 25.7 4.9E+02 0.011 23.4 9.1 119 5-124 24-156 (221)
173 PRK14157 heat shock protein Gr 25.5 5E+02 0.011 23.5 8.5 49 200-248 90-138 (227)
174 PF11594 Med28: Mediator compl 25.2 3E+02 0.0064 22.0 6.2 43 221-277 37-79 (106)
175 PF07445 priB_priC: Primosomal 25.1 4.4E+02 0.0095 22.6 15.7 42 22-63 2-60 (173)
176 PF14077 WD40_alt: Alternative 24.9 1.4E+02 0.0031 20.3 3.7 30 182-214 2-31 (48)
177 PRK06665 flgK flagellar hook-a 24.6 8E+02 0.017 25.4 11.6 42 20-63 94-135 (627)
178 PRK06799 flgK flagellar hook-a 24.5 6.8E+02 0.015 24.6 11.5 43 20-64 87-129 (431)
179 PF04912 Dynamitin: Dynamitin 24.4 6.4E+02 0.014 24.2 15.5 26 20-45 262-287 (388)
180 PF00611 FCH: Fes/CIP4, and EF 23.6 2.9E+02 0.0063 19.9 11.4 47 42-88 39-86 (91)
181 COG4942 Membrane-bound metallo 23.4 7.4E+02 0.016 24.6 22.2 40 18-57 58-97 (420)
182 PRK11637 AmiB activator; Provi 23.1 7E+02 0.015 24.2 24.3 26 114-139 164-189 (428)
183 PRK03907 fliE flagellar hook-b 22.4 3.8E+02 0.0083 21.0 8.3 61 68-128 32-92 (97)
184 PF06160 EzrA: Septation ring 22.3 8.4E+02 0.018 24.8 27.4 143 14-167 189-338 (560)
185 PRK14147 heat shock protein Gr 21.6 5.2E+02 0.011 22.2 8.6 49 200-248 31-79 (172)
186 PF06320 GCN5L1: GCN5-like pro 21.5 4.4E+02 0.0095 21.3 7.9 40 23-62 51-90 (121)
187 KOG3850|consensus 21.5 7.9E+02 0.017 24.3 10.5 81 200-280 266-366 (455)
188 PRK14151 heat shock protein Gr 21.4 5.4E+02 0.012 22.2 8.7 48 202-249 35-82 (176)
189 PHA02047 phage lambda Rz1-like 21.1 2E+02 0.0044 22.6 4.4 30 200-229 47-76 (101)
190 PF06148 COG2: COG (conserved 21.1 1.7E+02 0.0036 23.6 4.3 22 97-118 74-95 (133)
191 COG4064 MtrG Tetrahydromethano 21.1 3.5E+02 0.0077 20.0 5.5 33 3-35 6-38 (75)
192 PRK14141 heat shock protein Gr 21.1 6E+02 0.013 22.7 8.7 48 201-248 45-92 (209)
193 PRK14164 heat shock protein Gr 20.8 6.2E+02 0.013 22.7 8.4 53 198-250 81-133 (218)
194 PRK14154 heat shock protein Gr 20.8 6.1E+02 0.013 22.6 8.9 49 201-249 66-114 (208)
195 cd00632 Prefoldin_beta Prefold 20.6 4E+02 0.0088 20.5 13.2 50 26-78 6-55 (105)
196 PF15642 Tox-ODYAM1: Toxin in 20.5 7.3E+02 0.016 23.4 18.8 89 40-140 56-144 (385)
197 PRK14142 heat shock protein Gr 20.5 5.5E+02 0.012 23.2 7.7 51 199-249 45-95 (223)
198 PF03114 BAR: BAR domain; Int 20.3 5.1E+02 0.011 21.6 22.7 77 21-111 28-104 (229)
199 PRK14139 heat shock protein Gr 20.3 5.9E+02 0.013 22.3 8.8 49 202-250 47-95 (185)
200 PLN02939 transferase, transfer 20.1 1.2E+03 0.026 25.8 24.1 74 202-276 352-426 (977)
No 1
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=100.00 E-value=1.4e-53 Score=382.20 Aligned_cols=223 Identities=37% Similarity=0.578 Sum_probs=219.7
Q ss_pred CcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q psy8611 2 KSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYER 81 (280)
Q Consensus 2 ~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~ 81 (280)
||++||.|||+||++++.||+.||.||+.|+++++.|+++|++|+.++.+||.++..||++|.+++|+++|+.||+++++
T Consensus 12 ~~~~k~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~ 91 (234)
T cd07665 12 KMTIKMNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEK 91 (234)
T ss_pred ccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q psy8611 82 TEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEV 161 (280)
Q Consensus 82 ~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~ 161 (280)
++.++.+++.+|..+|++||+||+|+|+|||.+|++|.++|++|++++.+|.|+|++++||...+++||+++++.|+.
T Consensus 92 i~~~~~~qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~~dK~~~a~~Ev~-- 169 (234)
T cd07665 92 IEQLHQEQANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANKPDKLQQAKDEIA-- 169 (234)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999988889999999999998
Q ss_pred HHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8611 162 RIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKD 241 (280)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~ 241 (280)
+++.++++++.+|+.||+.|+.|+.||+.+|+.|||+
T Consensus 170 -------------------------------------------e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~ 206 (234)
T cd07665 170 -------------------------------------------EWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKN 206 (234)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 242 TMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 242 ~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
+|.+|++++|++|++ +++.||+|+|+++
T Consensus 207 ~v~~fles~ie~qke-----~ie~We~flp~~~ 234 (234)
T cd07665 207 HIIKYLETLLHSQQQ-----LVKYWEAFLPEAK 234 (234)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHhccccC
Confidence 999999999999999 9999999999863
No 2
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=100.00 E-value=3e-52 Score=374.29 Aligned_cols=223 Identities=41% Similarity=0.621 Sum_probs=219.5
Q ss_pred CcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q psy8611 2 KSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYER 81 (280)
Q Consensus 2 ~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~ 81 (280)
||++||.|||+||++++.||+.||.||+.|+++++.|+++|++|+.++.+||.++..||++|.+++|+++|+++|+++++
T Consensus 12 ~~~~k~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~k 91 (234)
T cd07664 12 KMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEK 91 (234)
T ss_pred hccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q psy8611 82 TEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEV 161 (280)
Q Consensus 82 ~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~ 161 (280)
++.++.+++.+|.++|++||+||+|+|+|||++|++|.++|++|++++.+|.|+|++++||...+++||+++++.||.
T Consensus 92 i~~~~~~qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~k~dK~~~~~~ev~-- 169 (234)
T cd07664 92 IDQLHQDQAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYANKPDKLQQAKDEIK-- 169 (234)
T ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999988889999999999998
Q ss_pred HHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8611 162 RIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKD 241 (280)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~ 241 (280)
+++.+++.++++|+.|++.++.|+.||+.+|+.||++
T Consensus 170 -------------------------------------------~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~ 206 (234)
T cd07664 170 -------------------------------------------EWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKT 206 (234)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 242 TMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 242 ~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
+|.+|++++|+++++ +++.|++|+|+++
T Consensus 207 ~l~~fles~ie~qke-----~ie~We~f~p~~~ 234 (234)
T cd07664 207 VIIKYLESLVQTQQQ-----LIKYWEAFLPEAK 234 (234)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHhhhccC
Confidence 999999999999999 9999999999863
No 3
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=100.00 E-value=4.8e-51 Score=365.01 Aligned_cols=223 Identities=46% Similarity=0.690 Sum_probs=219.9
Q ss_pred CcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q psy8611 2 KSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYER 81 (280)
Q Consensus 2 ~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~ 81 (280)
|+++||.|+|+||++.+.||+.||.||+.+++.++.|+++|++|+.++.+||.+|..||++|.+++|+++|+.+|+++++
T Consensus 2 ~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~k 81 (224)
T cd07623 2 KITIKMDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEK 81 (224)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q psy8611 82 TEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEV 161 (280)
Q Consensus 82 ~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~ 161 (280)
++.++.+++.+|..+|++||++|+|+|+|||++|++|.++|+.|++++.+|.|+|++++||...|++||+.+++.||.
T Consensus 82 i~~~~~~qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~~~~~K~~~~~~ev~-- 159 (224)
T cd07623 82 IEQLHGEQADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELSGRTDKLDQAQQEIK-- 159 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8611 162 RIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKD 241 (280)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~ 241 (280)
+++.+++.++++|+.||+.++.|+.||+.+|+.|||+
T Consensus 160 -------------------------------------------~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~ 196 (224)
T cd07623 160 -------------------------------------------EWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKD 196 (224)
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 242 TMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 242 ~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
+|..|++++|+++++ +++.|++|+|+.+
T Consensus 197 ~l~~~le~~i~~q~~-----~~~~We~~~pe~~ 224 (224)
T cd07623 197 IIIKYLESLLNTQQQ-----LIKYWEAFLPEAK 224 (224)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHhccccC
Confidence 999999999999999 9999999999853
No 4
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=100.00 E-value=1.9e-46 Score=333.53 Aligned_cols=213 Identities=28% Similarity=0.419 Sum_probs=208.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
|||+||.+.+.||+.||.+|++++++++.|+++|++|+.++.+||.+|..||.+|.+++|+.+|++||+++++++.++.+
T Consensus 1 e~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 1 EPDEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHHHHHH
Q psy8611 89 EAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAG--RSDKSIQAAHEVTEVRIKYL 166 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~--~~dk~~~~~~Ei~~~~~~~~ 166 (280)
++.+|..+|++||++|+++++|||++|++|.++|++|+++..+|.|++++++||...+ +++|+..++.||.
T Consensus 81 ~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~------- 153 (216)
T cd07627 81 QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELE------- 153 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999998766 4799999999998
Q ss_pred HhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy8611 167 LKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKY 246 (280)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~ 246 (280)
+++.+++.++++|+.|++.++.|+.+|+.+|+.|||++|.+|
T Consensus 154 --------------------------------------~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~ 195 (216)
T cd07627 154 --------------------------------------EAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIY 195 (216)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 247 LEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 247 ~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
+++||++|++ +++.||+|+.
T Consensus 196 ~e~~ie~~k~-----~ie~We~f~~ 215 (216)
T cd07627 196 LESAIESQKE-----LIELWETFYQ 215 (216)
T ss_pred HHHHHHHHHH-----HHHHHHHHhc
Confidence 9999999999 9999999985
No 5
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=100.00 E-value=9.6e-44 Score=317.35 Aligned_cols=220 Identities=30% Similarity=0.425 Sum_probs=215.1
Q ss_pred cccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q psy8611 3 SILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERT 82 (280)
Q Consensus 3 ~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~ 82 (280)
++++++|+|+||.+.++|++.|+.+|+.+++++++|+++|++++.++.+||.+|+.||.+|++++|+++|..||+++..+
T Consensus 15 ~~~~~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~ 94 (236)
T PF09325_consen 15 SSPKMKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKI 94 (236)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCchhHHHHHHHHHH
Q psy8611 83 EGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELA--GRSDKSIQAAHEVTE 160 (280)
Q Consensus 83 ~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~--~~~dk~~~~~~Ei~~ 160 (280)
+.++.+++..+...|++||++|+++++|||++|++|.+++..|+++..+|.+++++++|+..+ ++++|+..+..|+.
T Consensus 95 ~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~- 173 (236)
T PF09325_consen 95 SELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIE- 173 (236)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH-
Confidence 999999999999999999999999999999999999999999999999999999999999887 46799999999998
Q ss_pred HHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy8611 161 VRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFK 240 (280)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk 240 (280)
+++.+++.++++|+.|++.++.|+.||+.+|+.|||
T Consensus 174 --------------------------------------------~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k 209 (236)
T PF09325_consen 174 --------------------------------------------EAERRVEQAKDEFEEISENIKKELERFEKEKVKDFK 209 (236)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 241 DTMVKYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 241 ~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
++|.+|++.+|++|++ +++.|++|+|+
T Consensus 210 ~~l~~~~~~~i~~~~~-----~~~~We~~~~~ 236 (236)
T PF09325_consen 210 SMLEEYAESQIEYQKK-----MLEAWETFLPE 236 (236)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhHccC
Confidence 9999999999999999 99999999985
No 6
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=100.00 E-value=1.5e-38 Score=282.11 Aligned_cols=201 Identities=16% Similarity=0.231 Sum_probs=191.5
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q psy8611 6 KQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGV 85 (280)
Q Consensus 6 k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~ 85 (280)
.++|+|+||++.+.|++.|+.+|+.+++.++.++++|++|+.++.+||.++..||++|+ ++|+++|+.+|++.+++..+
T Consensus 18 ~~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~-t~L~~~ls~lae~~ek~~~l 96 (219)
T cd07621 18 GQKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEP-TPLDKFLLKVAETFEKLRKL 96 (219)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-chHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999998 68999999999999999999
Q ss_pred HHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Q psy8611 86 YAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKY 165 (280)
Q Consensus 86 ~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~ 165 (280)
+.+++.+|.++|+++|++|+|+++|+|++|.+|.++|..|++|+.+|.|+|+. ..+|.
T Consensus 97 ~~r~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k----------------~~~v~------ 154 (219)
T cd07621 97 EGRVASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAK----------------NKDVH------ 154 (219)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhc----------------hhhHH------
Confidence 99999999999999999999999999999999999999999999999999962 24455
Q ss_pred HHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy8611 166 LLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVK 245 (280)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~ 245 (280)
.+|.++++++++|+.||..++.|+.||+.+|+.|||.+|.+
T Consensus 155 ---------------------------------------~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve 195 (219)
T cd07621 155 ---------------------------------------AAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVE 195 (219)
T ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 246 YLEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 246 ~~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
|++++|++.+. .++.|.+.+..+
T Consensus 196 ~aE~~ik~Ak~-----~~~~l~~~~~~l 218 (219)
T cd07621 196 LAELEIKHAKA-----QIQLLKNCLAAL 218 (219)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHhc
Confidence 99999999999 999999876543
No 7
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=100.00 E-value=8.6e-38 Score=275.15 Aligned_cols=200 Identities=17% Similarity=0.250 Sum_probs=191.7
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~ 86 (280)
++|+|+||++.+.|++.|+.+|+.++..++.++++|++++.++..||.+++.||++| +++|+++|++++++.+++..++
T Consensus 18 ~kd~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e-~t~L~~~l~~laev~eki~~l~ 96 (218)
T cd07662 18 VKDVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQD-STDICKFFLKVSELFDKTRKIE 96 (218)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999995 6799999999999999999999
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q psy8611 87 AAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYL 166 (280)
Q Consensus 87 ~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~ 166 (280)
.+++..|..+|+++|++|+|+++|+|++|++|.++|..|++|+.+|.|+|++. .|+.
T Consensus 97 ~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~----------------kev~------- 153 (218)
T cd07662 97 ARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKN----------------KDVL------- 153 (218)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------------ChHH-------
Confidence 99999999999999999999999999999999999999999999999999861 4565
Q ss_pred HhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy8611 167 LKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKY 246 (280)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~ 246 (280)
++|.++++++++|+.||+.+|.|+.+|+..|+.+||++|..|
T Consensus 154 --------------------------------------~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y 195 (218)
T cd07662 154 --------------------------------------QAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVEL 195 (218)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 247 LEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 247 ~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
++++|++.+. ..+.|.+.+..+
T Consensus 196 ~E~~lkhak~-----~~~~~~~~~~~l 217 (218)
T cd07662 196 AELELKHAKG-----NLQLLQSCLAVL 217 (218)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhc
Confidence 9999999999 999998876543
No 8
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=100.00 E-value=1.4e-37 Score=275.05 Aligned_cols=200 Identities=20% Similarity=0.278 Sum_probs=189.8
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~ 86 (280)
++|+|+||++.+.|++.|+.+|+.+++.++.++++|++|+.++..||.++..| ++|++++|+++|+.+|++.+++..++
T Consensus 18 ~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l-~~ee~t~L~kals~lae~~Ek~~~l~ 96 (218)
T cd07663 18 VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSV-AAEEPTVIKKYLLKVAELFEKLRKVE 96 (218)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccccchHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999 57888899999999999999999999
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q psy8611 87 AAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYL 166 (280)
Q Consensus 87 ~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~ 166 (280)
.++|.+|.++|+++|++|+|+++|+|++|.+|.++|..|++|+.+|.|+|.. +.++.
T Consensus 97 ~r~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k----------------~kev~------- 153 (218)
T cd07663 97 DRVASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLK----------------SKDVK------- 153 (218)
T ss_pred HHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------hhhHH-------
Confidence 9999999999999999999999999999999999999999999999999842 34465
Q ss_pred HhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy8611 167 LKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKY 246 (280)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~ 246 (280)
++|.++.+++++|+.||+.++.|+.||+..|+.|||++|.+|
T Consensus 154 --------------------------------------~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~ 195 (218)
T cd07663 154 --------------------------------------QAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEM 195 (218)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 247 LEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 247 ~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
++++|++.+. .+..|.+.+..+
T Consensus 196 ~E~~ik~ak~-----~~~~~~~~~~~~ 217 (218)
T cd07663 196 TELEIKHAKN-----NVSLLQSCIDLF 217 (218)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhc
Confidence 9999999999 999998876543
No 9
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=3e-37 Score=271.00 Aligned_cols=194 Identities=19% Similarity=0.250 Sum_probs=183.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--hHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHA--SVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~--~ls~~l~~la~~~~~~~~~~ 86 (280)
++|+||.+.+.|++.|+.+|+.+++.++.|+++|++|+.++.+||.++..|+++|.++ .|+++|+.++++.+.++.++
T Consensus 1 d~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 1 DVDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999886 89999999999999999999
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q psy8611 87 AAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYL 166 (280)
Q Consensus 87 ~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~ 166 (280)
.+++.+|..+|++||++|+|+++|+|++|.+|.++|..|++|+.+|.|+|.++ .+
T Consensus 81 ~~~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k------------------~~------- 135 (198)
T cd07630 81 EVVAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAKPQK------------------KE------- 135 (198)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh------------------HH-------
Confidence 99999999999999999999999999999999999999999999999987553 11
Q ss_pred HhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy8611 167 LKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKY 246 (280)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~ 246 (280)
.++.+++.++.+|+.||..++.|+.||+.+|+.|||++|..|
T Consensus 136 --------------------------------------~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~ 177 (198)
T cd07630 136 --------------------------------------QAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCY 177 (198)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHH
Q psy8611 247 LEELMGYQQQEFKDTMVKYLEELM 270 (280)
Q Consensus 247 ~e~~I~~~k~~~~~~~~~~We~~~ 270 (280)
++++|+++++ .++.|.+-+
T Consensus 178 ~E~~i~~ak~-----~~~~~~~~~ 196 (198)
T cd07630 178 AESQIKNAKE-----AAAVLTKTL 196 (198)
T ss_pred HHHHHHHHHH-----HHHHHHhhh
Confidence 9999999999 999998754
No 10
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=3e-37 Score=271.62 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=187.4
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q psy8611 1 MKSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYE 80 (280)
Q Consensus 1 ~~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~ 80 (280)
++++++++.||++|.++++|++.|+.+|+++.++..+|++++++++.++.+||.+|+.||.+|+ +|+.+|+.+|++.+
T Consensus 3 ~~~~~~~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~--~L~~~L~~~~~~~~ 80 (200)
T cd07624 3 TSTMYLLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASET--ELAPLLEGVSSAVE 80 (200)
T ss_pred ccchhhhcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999997 59999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q psy8611 81 RTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTE 160 (280)
Q Consensus 81 ~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~ 160 (280)
.++..+.+++..+...|.+||+||++|++|||.+|..|+..+..|+.+...|.+++.+ +..+
T Consensus 81 ~~~~~~~~l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~---------------l~~e--- 142 (200)
T cd07624 81 RCTAALEVLLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE---------------LLKE--- 142 (200)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHH---
Confidence 9999999999999999999999999999999999999999999999999999998865 1223
Q ss_pred HHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy8611 161 VRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFK 240 (280)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk 240 (280)
++.++++++++++.+++|++||+.+|..|||
T Consensus 143 -------------------------------------------------v~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k 173 (200)
T cd07624 143 -------------------------------------------------VEKLQDKLECANADLKADLERWKQNKRQDLK 173 (200)
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 241 DTMVKYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 241 ~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
.+|.+|++.||+||++ +++.|++++|.
T Consensus 174 ~~l~~~a~~qi~~~~~-----~~~~We~~~p~ 200 (200)
T cd07624 174 KILLDMAEKQIQYYEQ-----CLAAWEEVLPA 200 (200)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHhhcCC
Confidence 9999999999999999 99999999983
No 11
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=3.1e-35 Score=257.58 Aligned_cols=214 Identities=24% Similarity=0.320 Sum_probs=207.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--hHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHA--SVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~--~ls~~l~~la~~~~~~~~~~ 86 (280)
|||+||.+.+.|++.|+.+|+.|+++++++++++++++.++.+||.+|..||.+|.+. +|+.++..+|+++..++..+
T Consensus 1 e~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (218)
T cd07596 1 EEDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLS 80 (218)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999765 69999999999999999999
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CchhHHHHHHHHHHHHHH
Q psy8611 87 AAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAG--RSDKSIQAAHEVTEVRIK 164 (280)
Q Consensus 87 ~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~--~~dk~~~~~~Ei~~~~~~ 164 (280)
.+++..+..+|++||++|++++.|+|++|..|..++..|+.+...+.+++.+++|+...+ +++|+..+..+|.
T Consensus 81 ~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~----- 155 (218)
T cd07596 81 EAQANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELE----- 155 (218)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHH-----
Confidence 999999999999999999999999999999999999999999999999999999998765 6789999999998
Q ss_pred HHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8611 165 YLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244 (280)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~ 244 (280)
+++.+++.++.+++.|+..++.|+.+|+..|+.||+.+|.
T Consensus 156 ----------------------------------------~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~ 195 (218)
T cd07596 156 ----------------------------------------EAESALEEARKRYEEISERLKEELKRFHEERARDLKAALK 195 (218)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 245 KYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 245 ~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
.|++.+|+++++ +++.|+.++|+
T Consensus 196 ~~~~~qi~~~~~-----~~~~W~~~~~~ 218 (218)
T cd07596 196 EFARLQVQYAEK-----IAEAWESLLPE 218 (218)
T ss_pred HHHHHHHHHHHH-----HHHHHHhhCCC
Confidence 999999999999 99999999874
No 12
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.6e-33 Score=251.92 Aligned_cols=216 Identities=15% Similarity=0.165 Sum_probs=208.0
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~ 86 (280)
..+++++..+-+--+..+--.-+.|++.+++++++|++|+.++.+||.+|..|+.+|++++|+++++.||++.+.++.++
T Consensus 13 p~d~~~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~ 92 (230)
T cd07625 13 PYDEYTELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDID 92 (230)
T ss_pred CCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHH
Confidence 34567888888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chhHHHHHHHHHHHHHH
Q psy8611 87 AAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGR--SDKSIQAAHEVTEVRIK 164 (280)
Q Consensus 87 ~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~--~dk~~~~~~Ei~~~~~~ 164 (280)
..++..|+.+|++||.+|++.+.+||++|..|+.++..|++|+.++.+|+++.+||..+++ +||++++..+++
T Consensus 93 ~~QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~----- 167 (230)
T cd07625 93 SIQATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLE----- 167 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHH-----
Confidence 9999999999999999999999999999999999999999999999999999999998775 899999999998
Q ss_pred HHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8611 165 YLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244 (280)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~ 244 (280)
+++.+++.++.+|+.||..++.|+.+|+.++..||+.+|.
T Consensus 168 ----------------------------------------eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ 207 (230)
T cd07625 168 ----------------------------------------EATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIR 207 (230)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 245 KYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 245 ~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
+|+..+|+++.+ ++..||++.|+
T Consensus 208 ey~~~~ie~erk-----~l~~lE~~r~d 230 (230)
T cd07625 208 EYTLRKIEYERK-----KLSLLERIRLD 230 (230)
T ss_pred HHHHHHHHHHHH-----HHHHHHhccCC
Confidence 999999999999 99999998763
No 13
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.7e-31 Score=240.46 Aligned_cols=197 Identities=14% Similarity=0.190 Sum_probs=175.4
Q ss_pred ccc-cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH
Q psy8611 4 ILK-QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERT 82 (280)
Q Consensus 4 ~~k-~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~ 82 (280)
.++ ++.||++|.++++|++.|+.+|.++.+++.+|+++..++...+.+||+++..||++|+ .|+.+|+.+|.+.+.+
T Consensus 45 ~~~~v~~~~~eF~Emkey~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~--~L~~~L~~~a~~~d~~ 122 (243)
T cd07666 45 SVRGVKNRPEEFTEMNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEE--ELADSLKGMASCIDRC 122 (243)
T ss_pred hccccCCCCHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccch--hhhHHHHHHHHHHHHH
Confidence 455 7999999999999999999999999999999999999999999999999999999997 4999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q psy8611 83 EGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVR 162 (280)
Q Consensus 83 ~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~ 162 (280)
+..+.++...+...|.++|+||++|++|+|++|..|+ .++.++.++++.+.|. ++|| .++..||.
T Consensus 123 ~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~-------~~Q~~le~k~e~l~k~----~~dr-~~~~~ev~--- 187 (243)
T cd07666 123 CKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRD-------QIQAELDSKVEALANK----KADR-DLLKEEIE--- 187 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh----hhhH-HHHHHHHH---
Confidence 9999999999999999999999999999999999996 5566666676666552 4555 45566665
Q ss_pred HHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy8611 163 IKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDT 242 (280)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~ 242 (280)
+++.+++ +.+..|+.|++||+..|+.|||.+
T Consensus 188 ------------------------------------------~~e~kve-------~a~~~~k~e~~Rf~~~k~~D~k~~ 218 (243)
T cd07666 188 ------------------------------------------KLEDKVE-------CANNALKADWERWKQNMQTDLRSA 218 (243)
T ss_pred ------------------------------------------HHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655554 448889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 243 MVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 243 l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
+.+|++.+|.+|++ ++..||+|+.
T Consensus 219 ~~~yae~~i~~~~~-----~~~~We~fl~ 242 (243)
T cd07666 219 FTDMAENNISYYEE-----CLATWESFLH 242 (243)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHhc
Confidence 99999999999999 9999999973
No 14
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=100.00 E-value=1.5e-30 Score=233.34 Aligned_cols=199 Identities=12% Similarity=0.187 Sum_probs=184.5
Q ss_pred CcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Q psy8611 2 KSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYER 81 (280)
Q Consensus 2 ~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~ 81 (280)
+..+|++.||++|.++++|+|.|+..|.++.++..+++++..++..++.++|+.|+.|+.+|+ .|..+|..||.+..+
T Consensus 41 na~~kv~~~d~eF~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~--~l~~~L~~~a~~~~~ 118 (240)
T cd07667 41 TGGYKLRSRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEG--ELAEPLEGVSACIGN 118 (240)
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 345799999999999999999999999999999999999999999999999999999999995 699999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q psy8611 82 TEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEV 161 (280)
Q Consensus 82 ~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~ 161 (280)
++..+..........|..+|++|+.|+.|+|.++..|+..+..|+.....+.-+
T Consensus 119 ~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~r-------------------------- 172 (240)
T cd07667 119 CSTALEELTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVALR-------------------------- 172 (240)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 999999988888789999999999999999999999999999998866665322
Q ss_pred HHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8611 162 RIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKD 241 (280)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~ 241 (280)
++++++++.+++.+++++++|++.+++|+++|+..|..|||.
T Consensus 173 --------------------------------------re~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~ 214 (240)
T cd07667 173 --------------------------------------KEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQ 214 (240)
T ss_pred --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233347888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 242 TMVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 242 ~l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
+|.+|++.||+||++ |++.||+++|
T Consensus 215 ~l~~~Ad~~i~fy~~-----~~~~We~~l~ 239 (240)
T cd07667 215 LLMGMADKNIQYYEK-----CLTAWESIIP 239 (240)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHcC
Confidence 999999999999999 9999999987
No 15
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.98 E-value=3.6e-30 Score=224.18 Aligned_cols=184 Identities=17% Similarity=0.193 Sum_probs=172.9
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
+||++|.++++|++.|+.+|.++.++..+|+++..+|+.++.+||.+|..|+.+|++ .|+.+|+.||.....++..+.+
T Consensus 1 ~~d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~-~L~~~l~~~~~~~~~~s~~~~~ 79 (185)
T cd07628 1 KPDKEFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESG-EITEPFKIFSESLSQFSTSLRV 79 (185)
T ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch-hhhHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999975 4999999999999999999999
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q psy8611 89 EAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLK 168 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~ 168 (280)
++......|.+||++|++|++|+|.++..|+.++..|+.+...|
T Consensus 80 l~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l------------------------------------ 123 (185)
T cd07628 80 LNKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL------------------------------------ 123 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------------------------------
Confidence 99998889999999999999999999999999999999877555
Q ss_pred hhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 169 TLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
++..++.++.++++|++.+++|+.||+..|..|||.+|.+|++
T Consensus 124 -------------------------------------l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~ 166 (185)
T cd07628 124 -------------------------------------LTDEVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALAD 166 (185)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123466788999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 249 ELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 249 ~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
.||+||++ +++.|+++.|
T Consensus 167 ~qi~~y~~-----~~~~W~~~~~ 184 (185)
T cd07628 167 GHIDFYQG-----LVEDWEKVEP 184 (185)
T ss_pred HHHHHHHH-----HHHHHHhhcC
Confidence 99999999 9999999987
No 16
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=99.98 E-value=1.1e-29 Score=223.79 Aligned_cols=196 Identities=11% Similarity=0.186 Sum_probs=181.8
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Q psy8611 1 MKSILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYE 80 (280)
Q Consensus 1 ~~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~ 80 (280)
|+..+|+++||++|.++++|++.|+.+|.++.++..+|+++..+++.++.+||..|+.||.+|+ +|..+|..+|.+.+
T Consensus 3 ~na~~~~~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~--~l~~~le~~g~~~d 80 (201)
T cd07622 3 LNASFRLRNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEK--EMGDGLQKAGHYMD 80 (201)
T ss_pred ccccccCCCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999994 79999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q psy8611 81 RTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTE 160 (280)
Q Consensus 81 ~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~ 160 (280)
.++......+..+ ..|.+||++|+.|++|+|.++..|+....++..+...|.+++.+
T Consensus 81 ~~~~~~~~~~~~~-~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~---------------------- 137 (201)
T cd07622 81 SYAASIDNGLEDE-ELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ---------------------- 137 (201)
T ss_pred HHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence 9999998877665 67999999999999999999999999999999888777776443
Q ss_pred HHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy8611 161 VRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFK 240 (280)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk 240 (280)
++..++.++..+++|++.+++|++||+.+|..|||
T Consensus 138 ---------------------------------------------l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk 172 (201)
T cd07622 138 ---------------------------------------------GEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLK 172 (201)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 241 DTMVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 241 ~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
.+|.+|+..||+||++ +++.|+++..
T Consensus 173 ~~l~~~A~~qi~~~~~-----~~~~W~~~~~ 198 (201)
T cd07622 173 EILISYAKLQIKLAKK-----GLQTWTNIKE 198 (201)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 9999999999999999 9999999864
No 17
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.97 E-value=7e-28 Score=213.55 Aligned_cols=204 Identities=14% Similarity=0.126 Sum_probs=191.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEA 90 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a 90 (280)
|...--+.+||+.||.||..|++.+..+++++++|+..+.+||.++..||++| +++|+++|+.||++...+..++..++
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E-~~~L~~~L~~lae~~~~i~d~~q~qv 81 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTE-NPSLKQGLKNFAECLAALQDYRQAEV 81 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566678999999999999999999999999999999999999999999999 68999999999999999999999999
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhh
Q psy8611 91 GADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTL 170 (280)
Q Consensus 91 ~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l 170 (280)
..+...|.+||.+|.++|.++|+.|+. |+.|...+.+++.+++|+...+++++. +|.
T Consensus 82 ~~l~~~v~epLk~Y~~l~k~~k~~~K~-------~~~ar~~~~~~~~~leklk~~~~~d~~-----~i~----------- 138 (211)
T cd07598 82 ERLEAKVVQPLALYGTICKHARDDLKN-------TFTARNKELKQLKQLEKLRQKNPSDRQ-----IIS----------- 138 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCchhh-----HHH-----------
Confidence 999999999999999999999998832 999999999999999999877777643 444
Q ss_pred ccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8611 171 FNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL 250 (280)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~ 250 (280)
+++.++..++.+|+.++..++.||.+|+.+|+.|||.++.+|+..+
T Consensus 139 ----------------------------------eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~ 184 (211)
T cd07598 139 ----------------------------------QAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIE 184 (211)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhc
Q psy8611 251 MGYQQQEFKDTMVKYLEELMGYQQQVS 277 (280)
Q Consensus 251 I~~~k~~~~~~~~~~We~~~~~~~~~~ 277 (280)
+.+|.+ +++.|...+..+++|+
T Consensus 185 m~~~~k-----ale~~~~~~~~~~~~~ 206 (211)
T cd07598 185 MLFHAK-----ALEVYTAAYQDIQNID 206 (211)
T ss_pred HHHHHH-----HHHHHHHHHHHHhccc
Confidence 999999 9999999999999885
No 18
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=99.95 E-value=4.4e-26 Score=200.11 Aligned_cols=189 Identities=18% Similarity=0.296 Sum_probs=163.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHhcc------ccchhHHHHHHHHHHHHHHH
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDL-SVYSAHLAKSLALVSNT------EEHASVSRVVSTLGELYERT 82 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl-~~~~~e~~~s~~~Ls~~------E~~~~ls~~l~~la~~~~~~ 82 (280)
.|..-+.-+.++.+||+.+++|..++...+++..-. -..|..+|.+|..||.+ +.+++|+++|+.+|++++.|
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 456677888999999999999999999999775333 36678999999999953 34578999999999999999
Q ss_pred HHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q psy8611 83 EGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVR 162 (280)
Q Consensus 83 ~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~ 162 (280)
++++++||..|+.+|.+.|++|.|+|+++|++|+.| ..+|.|+|++. |+...|++. ..|+
T Consensus 82 g~l~~eQa~~D~~~l~E~L~eY~gll~~~pdi~~~~----------k~al~K~kE~~-r~~~egk~~-----~~e~---- 141 (199)
T cd07626 82 GELFAEQPKHDLIPLLDGLHEYKGLLSTFPDIIGVH----------KGAVQKVKECE-RLVDEGKMS-----SAEL---- 141 (199)
T ss_pred HHHHHHhhHhhHHHHHHHHHHHHhHHHhhhHHHHHH----------HHHHHHHHHHH-HHHHhcccc-----HHHH----
Confidence 999999999999999999999999999999999998 55588999987 555556542 1223
Q ss_pred HHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy8611 163 IKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDT 242 (280)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~ 242 (280)
+.++++++.||..+++||.||+.+|+.|||.+
T Consensus 142 ------------------------------------------------~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~ 173 (199)
T cd07626 142 ------------------------------------------------EEVKRRTDVISYALLAEINHFHRERVRDFKSM 173 (199)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 243 MVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 243 l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
|..||+.||+||++ ++..|+..++
T Consensus 174 m~~yLe~qI~fyqq-----I~~kl~~a~~ 197 (199)
T cd07626 174 MRNYLQQQIEFYQK-----IAAKLEEALA 197 (199)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 99999999999999 9999998765
No 19
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.94 E-value=4.6e-24 Score=186.13 Aligned_cols=183 Identities=14% Similarity=0.109 Sum_probs=165.5
Q ss_pred cCchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLS-HLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYA 87 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk-~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~ 87 (280)
+||++|.+...+++.|+..|. +|+++..++.++-.+|+.++.+||..|+.||.+|++..|+.+|..+|.+++.+.....
T Consensus 1 ~~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~ 80 (187)
T cd07629 1 EPDDEFTDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATE 80 (187)
T ss_pred CcchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999995 8999999999999999999999999999999999866799999999999999999999
Q ss_pred HhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q psy8611 88 AEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLL 167 (280)
Q Consensus 88 ~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~ 167 (280)
.+.......|.+||++|+.|++++|.++..|.....+|......| .+
T Consensus 81 ~l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~~L------~e--------------------------- 127 (187)
T cd07629 81 ALVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTKDSL------LE--------------------------- 127 (187)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH---------------------------
Confidence 999888889999999999999999999999999888888766666 00
Q ss_pred hhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy8611 168 KTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAI-SAMIKREYAGFEASRVQEFKDTMVKY 246 (280)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~i-s~~ik~Ev~rF~~ek~~dfk~~l~~~ 246 (280)
.+ .++..+++.| +..+++|+.||+.+|..||+.+|.+|
T Consensus 128 -------------------------------------~~----~~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~ 166 (187)
T cd07629 128 -------------------------------------SA----LVAASDDLVISSTIKQKDLPRFQREREADLREILKNY 166 (187)
T ss_pred -------------------------------------HH----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 00 1223456666 69999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHH
Q psy8611 247 LEELMGYQQQEFKDTMVKYLEELM 270 (280)
Q Consensus 247 ~e~~I~~~k~~~~~~~~~~We~~~ 270 (280)
+..||.++++ +++.|+++-
T Consensus 167 a~~~~~~a~~-----~~~~W~~~~ 185 (187)
T cd07629 167 SKYHKDWAKQ-----NLEAWKEAK 185 (187)
T ss_pred HHHHHHHHHH-----HHHHHHHhh
Confidence 9999999999 999999874
No 20
>KOG2273|consensus
Probab=99.93 E-value=1.1e-23 Score=208.15 Aligned_cols=223 Identities=32% Similarity=0.382 Sum_probs=204.0
Q ss_pred cccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch-hHHHHHHHHHHHHHH
Q psy8611 3 SILKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHA-SVSRVVSTLGELYER 81 (280)
Q Consensus 3 ~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~-~ls~~l~~la~~~~~ 81 (280)
+.+++.+.|.||.+..++++.|+.+++.+.+++..+++.+++|+.+++++|..|..|+.++... .++.+++.++.+...
T Consensus 265 ~~~~~~~~~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~ 344 (503)
T KOG2273|consen 265 SFKKFKESDKEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIES 344 (503)
T ss_pred cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999999999888 899999999999999
Q ss_pred HHHHHHHh-hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Q psy8611 82 TEGVYAAE-AGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTE 160 (280)
Q Consensus 82 ~~~~~~~~-a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~ 160 (280)
+.....+. +.++...+.+++++|++++++++.+|.+|.++++.|+.++.++.++++...++......
T Consensus 345 ~~~~~e~~~~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~------------ 412 (503)
T KOG2273|consen 345 LSKLLEKLTAEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRS------------ 412 (503)
T ss_pred HHHHHHHhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh------------
Confidence 99999999 99999999999999999999999999999999999999999999999998887655421
Q ss_pred HHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHH-----HHHH--HHHHHHHHHHHhHHH
Q psy8611 161 VRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQ-----EDFA--AISAMIKREYAGFEA 233 (280)
Q Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~-----~~~e--~is~~ik~Ev~rF~~ 233 (280)
++ |++....++..+..++.+++.+. ++|+ .|++.++.|+.+|+.
T Consensus 413 ----------------------------~~-~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~~~f~~ 463 (503)
T KOG2273|consen 413 ----------------------------SF-GFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRAELERFEE 463 (503)
T ss_pred ----------------------------hh-ccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 01 33444444444457778888877 8888 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 234 SRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 234 ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
.|..||+.++..|++.+|+++++ +++.|+++.|
T Consensus 464 ~~~~d~~~~~~~~~d~~i~~~~~-----~l~~W~~~~~ 496 (503)
T KOG2273|consen 464 SRRQDFKESLKKYADLHVEYAEQ-----ILKAWEKFLP 496 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcc
Confidence 99999999999999999999999 9999999998
No 21
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=99.90 E-value=2.2e-21 Score=174.50 Aligned_cols=192 Identities=20% Similarity=0.324 Sum_probs=167.1
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhcc------ccchhHHHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALAR-RDLSVYSAHLAKSLALVSNT------EEHASVSRVVSTLGELY 79 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r-~dl~~~~~e~~~s~~~Ls~~------E~~~~ls~~l~~la~~~ 79 (280)
..+.+...+.-..++..||..++.|..++...+++. ..+-..+..+|.+|..||.. ..+.+|+++|..+|+++
T Consensus 36 ~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y 115 (237)
T PF10456_consen 36 PQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTY 115 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHH
Confidence 345567888889999999999999999999998654 55567788999999999984 22468999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q psy8611 80 ERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVT 159 (280)
Q Consensus 80 ~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~ 159 (280)
+.|++++++|+..|+.+|.+.|++|.+++.+.+++++.. ..++.|.+++. ||..+|+.+ ..
T Consensus 116 ~~Ig~l~~~Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~h----------k~A~~k~ke~~-kl~~e~K~~-----~~--- 176 (237)
T PF10456_consen 116 EEIGDLFAEQPKNDLIPLLDCLKEYRGLLSNFPDIISVH----------KGALQKVKECE-KLSDEGKMS-----QQ--- 176 (237)
T ss_dssp HHHHHHHHTSGGGTHHHHHHHHHHHHHHHHTHHHHHHHH----------HHHHHHCTCHH-HHHHTTSS------HH---
T ss_pred HHHHHHHHhccccchHHHHHHHHHHhhhHhhCccHHHHH----------HHHHHHHHHHH-HHHhccCCC-----HH---
Confidence 999999999999999999999999999999999999987 66777777775 777777753 11
Q ss_pred HHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8611 160 EVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEF 239 (280)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~df 239 (280)
.++.++.+.+.||..+.+|+.+|+.+|+.||
T Consensus 177 -------------------------------------------------~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df 207 (237)
T PF10456_consen 177 -------------------------------------------------EAEEVQRRCDVISYAVLAEMNHFHQERVEDF 207 (237)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2355678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 240 KDTMVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 240 k~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
+.+|..||..||.||++ +++.|++.+.
T Consensus 208 ~~~m~~yL~~Qi~Fyq~-----i~~kLe~a~~ 234 (237)
T PF10456_consen 208 KSMMKTYLQQQIAFYQQ-----IAEKLEQALQ 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 99999999999999999 9999999875
No 22
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.88 E-value=9.8e-21 Score=164.74 Aligned_cols=190 Identities=21% Similarity=0.289 Sum_probs=164.8
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHhccc------cchhHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLS---VYSAHLAKSLALVSNTE------EHASVSRVVSTLGE 77 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~---~~~~e~~~s~~~Ls~~E------~~~~ls~~l~~la~ 77 (280)
..+.|...+.-+.++..||+.++.|..++...+++ ..+ ..|..+|.+|..||.+- .+.+|++++...|+
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk--~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~ 84 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARK--QVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGE 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHHHHHH
Confidence 34667788888999999999999999999998844 444 45668899999999841 13579999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q psy8611 78 LYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHE 157 (280)
Q Consensus 78 ~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~E 157 (280)
+++.|++++++|+.+|+.+|.+.|++|.+++++++|+++.. ..++.|++++. |+..+|+.+ .
T Consensus 85 ~y~~IG~~faeQpk~Dl~Pl~d~L~~Y~G~L~~fPDii~v~----------KgA~~KvKE~~-k~~~egkm~-----~-- 146 (207)
T cd07670 85 AYEAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQ----------KGALTKVKESK-KHVEEGKME-----L-- 146 (207)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCCchHHHh----------HHHHHHHHHHH-HHHHhhccc-----h--
Confidence 99999999999999999999999999999999999999997 88888999986 787777653 1
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy8611 158 VTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQ 237 (280)
Q Consensus 158 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~ 237 (280)
...+.+.++.+.||..+.+||.||+.+|+.
T Consensus 147 --------------------------------------------------~~~~~v~~R~dviSya~~AEm~HFh~~r~~ 176 (207)
T cd07670 147 --------------------------------------------------QKADGIQDRCNIISFATLAEIHHFHKIRVR 176 (207)
T ss_pred --------------------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 238 EFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 238 dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
|||.+|..||+.||.||++ +...++..++
T Consensus 177 d~k~~M~~yL~~QI~Fyq~-----v~~kl~~~l~ 205 (207)
T cd07670 177 DFKSQMQHFLQQQIRFFQK-----VTQKLEEALQ 205 (207)
T ss_pred hHHHHHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 9999999999999999999 8888887665
No 23
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=99.88 E-value=1.7e-20 Score=163.84 Aligned_cols=191 Identities=15% Similarity=0.240 Sum_probs=164.7
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHhcc------ccchhHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLS---VYSAHLAKSLALVSNT------EEHASVSRVVSTLGE 77 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~---~~~~e~~~s~~~Ls~~------E~~~~ls~~l~~la~ 77 (280)
..+.|..-+.-..++..||+.++.|..++...+++ ..+ ..+..+|.+|..||.. ..+.+|++++...|+
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk--~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~ 84 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKR--CTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEAGK 84 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHH
Confidence 34566777888999999999999999999988844 333 4566889999999884 123579999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q psy8611 78 LYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHE 157 (280)
Q Consensus 78 ~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~E 157 (280)
+++.|++++++|+.+|+.+|.+.|++|.|++++.+|+++.. ..++.|++++. |+..+|+.+ .
T Consensus 85 ~y~~IG~~faeQpk~Dl~pl~d~L~~Y~G~L~~fPDIi~v~----------KgA~~KvkE~~-k~~~egkm~-----~-- 146 (210)
T cd07668 85 TYEEIASLVAEQPKKDLHFLMETNHEYKGFLGCFPDIIGAH----------KGAIEKVKESD-KLVATSKIT-----L-- 146 (210)
T ss_pred HHHHHHHHHHhcchhhhHHHHHHHHHHhCccccCccHHHHH----------HHHHHHHHHHH-HHhhhccch-----h--
Confidence 99999999999999999999999999999999999999986 78888999986 787777653 1
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy8611 158 VTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQ 237 (280)
Q Consensus 158 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~ 237 (280)
..++.++++.+.||..+.+|+.||+..|+.
T Consensus 147 --------------------------------------------------~~~~~v~~R~dviSya~~AEm~HFh~~r~~ 176 (210)
T cd07668 147 --------------------------------------------------QDKQNMVKRVSTMSYALQAEMNHFHSNRIY 176 (210)
T ss_pred --------------------------------------------------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 123556789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 238 EFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 238 dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
|||++|..||+.||.||++ +....+..++.
T Consensus 177 d~k~~M~~yL~eQi~Fyq~-----v~~kl~~~l~~ 206 (210)
T cd07668 177 DYNSVIRLYLEQQVQFYET-----IAEKLRQALSR 206 (210)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHh
Confidence 9999999999999999999 99998887764
No 24
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=99.87 E-value=3e-20 Score=162.06 Aligned_cols=190 Identities=17% Similarity=0.270 Sum_probs=163.2
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHhccc------cchhHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLS---VYSAHLAKSLALVSNTE------EHASVSRVVSTLGE 77 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~---~~~~e~~~s~~~Ls~~E------~~~~ls~~l~~la~ 77 (280)
..+.|...+.-..++..||+.++.|..++...+++ ..+ ..|..+|.+|..||..- .+..|+.++...|+
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk--~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~ 84 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRK--HLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGR 84 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 34667788888999999999999999999988844 333 44568899999999841 13579999999999
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Q psy8611 78 LYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHE 157 (280)
Q Consensus 78 ~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~E 157 (280)
+++.|++++++|+.+|+.+|.+.|++|.|++++.+|+++.. ..++.|++++. |+..+++.+
T Consensus 85 ~y~~IG~~faeQpk~D~~pl~d~L~~Y~GlL~~fPDii~v~----------K~A~~KvkE~~-k~~~e~Km~-------- 145 (207)
T cd07669 85 TYEAVGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQ----------KGAFAKVKESQ-RMSDEGRMD-------- 145 (207)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHhCcccCCccHHHHH----------HHHHHHHHHHH-HhhHHhhhh--------
Confidence 99999999999999999999999999999999999999986 78888988875 776666542
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy8611 158 VTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQ 237 (280)
Q Consensus 158 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~ 237 (280)
...++.++++.+.||..+.+|+.||+.+|+.
T Consensus 146 -------------------------------------------------~~~~~~v~~R~~~isya~~AEm~HFh~~r~~ 176 (207)
T cd07669 146 -------------------------------------------------QDEADGIRKRCRVVGFALQAEMNHFHQRREL 176 (207)
T ss_pred -------------------------------------------------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 1123556789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 238 EFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 238 dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
|||++|..||+.||.||++ +....+..++
T Consensus 177 d~k~~M~~yL~eQi~Fyq~-----v~~kle~al~ 205 (207)
T cd07669 177 DFKQMMQHYLRQQIIFYQR-----VSQQLEKTLR 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 9999999999999999999 9998888765
No 25
>KOG1660|consensus
Probab=99.82 E-value=4.9e-19 Score=163.69 Aligned_cols=204 Identities=18% Similarity=0.187 Sum_probs=188.6
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH
Q psy8611 5 LKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEG 84 (280)
Q Consensus 5 ~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~ 84 (280)
-++++.|+||+..+.++-.+-.+++.-.-..+++...++..+.+|..+|..+..|+.-+. ..+...+...|...+.++.
T Consensus 195 g~lkdVddFfe~ek~fl~ey~~~ikdas~kadKmt~~hK~~~ddy~~i~~~~~~lg~ed~-~~v~~~~l~~~e~f~~~~k 273 (399)
T KOG1660|consen 195 GKLKDVDDFFETEKNFLKEYHFRIKDASLKADKLTRAHKSVGDDYDQIGNRLNRLGEEDA-ANVKKFQLKEAEYFEEESK 273 (399)
T ss_pred cceeehhHHHHhhhHHHHHHhhHHhhhccchHHhhhhcccccccHHHHHHHHHHhhhhhh-cccceeeecchhHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999997765 5688888999999999999
Q ss_pred HHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q psy8611 85 VYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIK 164 (280)
Q Consensus 85 ~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~ 164 (280)
+..+-+..+.+.|+++|++|.+-..+.|+.+.+|.+++.+|++|+.+|.|.|+. +.+|.
T Consensus 274 ~e~Rvs~dedlkL~d~l~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~k----------------nkdv~----- 332 (399)
T KOG1660|consen 274 VERRVSSDEDLKLGDTLRYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARAK----------------NKDVH----- 332 (399)
T ss_pred HhhhhchHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc----------------cccch-----
Confidence 999999999999999999999999999999999999999999999999998873 34465
Q ss_pred HHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8611 165 YLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244 (280)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~ 244 (280)
.+|...+.++++|+.||+..|.|+..|...||+.||++|.
T Consensus 333 ----------------------------------------~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~ 372 (399)
T KOG1660|consen 333 ----------------------------------------AAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLV 372 (399)
T ss_pred ----------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHH
Confidence 7888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 245 KYLEELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 245 ~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
++.+..|++.+. -+..+...+..++.
T Consensus 373 el~eleikhak~-----~~~ll~~~~~~lk~ 398 (399)
T KOG1660|consen 373 ELSELEIKHAKT-----NYSLLRQCLLALKE 398 (399)
T ss_pred HHHHHHHHhhhh-----hHHHHHHHHHHhhc
Confidence 999999999999 88888777665543
No 26
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.74 E-value=3e-15 Score=135.87 Aligned_cols=214 Identities=14% Similarity=0.130 Sum_probs=174.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc-----------hhHHHHHHHHHHHH
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEH-----------ASVSRVVSTLGELY 79 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~-----------~~ls~~l~~la~~~ 79 (280)
-+-|...++||..+.+.+.+|...+++++++.+.++.+..+||.++..|+..+.. ..+.+.|+.+|...
T Consensus 21 ~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~s~~~ 100 (246)
T cd07597 21 QEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSLSKHF 100 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999998752 57899999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q psy8611 80 ERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARG-KIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEV 158 (280)
Q Consensus 80 ~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~-~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei 158 (280)
..++....+++......+.++|..|+.++.|+|++|.+|. .+..++..+...+........++...+ ..| ..|+
T Consensus 101 ~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~-~~~----~~e~ 175 (246)
T cd07597 101 QLLSDLSEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKP-DVK----GAEV 175 (246)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCC-CCc----hhHH
Confidence 9999999999999999999999999999999999999999 557778877777776666555554331 111 1122
Q ss_pred HHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8611 159 TEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQE 238 (280)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~d 238 (280)
+ ..++.|..-+..+.....+.--+-+.|..|+..|+.... .
T Consensus 176 e--------------------------------------kl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~ 216 (246)
T cd07597 176 D--------------------------------------KLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-L 216 (246)
T ss_pred H--------------------------------------HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 2 011111122222223223555666999999999999988 9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 239 FKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 239 fk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
+..++.+|+..++.++.+ +.+.|+.+.|.+
T Consensus 217 ~~~~l~~~~~~q~~~~~~-----l~~~W~~L~~~l 246 (246)
T cd07597 217 LTSILQEFVKDEIQYHSE-----LANVWERLVPKL 246 (246)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHhcccC
Confidence 999999999999999999 999999998853
No 27
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=99.68 E-value=5.4e-14 Score=118.94 Aligned_cols=188 Identities=18% Similarity=0.269 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh---HHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q psy8611 21 LDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHAS---VSRVVSTLGELYERTEGVYAAEAGADLNIL 97 (280)
Q Consensus 21 i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~---ls~~l~~la~~~~~~~~~~~~~a~~e~~~l 97 (280)
++.++..++.|.+.+..+...-..+......||.+|..++....+.+ ++.++..+|+++..+......+...-...+
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v 81 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKV 81 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999888999999999999999999876543 799999999999999999999988888899
Q ss_pred HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCC
Q psy8611 98 AELFRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPS 176 (280)
Q Consensus 98 ~~~l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~ 176 (280)
.+||..|+ ..+..++++.+.|.+....|..+...+.+.+.... .+. .+
T Consensus 82 ~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~------~~~-------~l------------------ 130 (194)
T cd07307 82 IEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK------DSS-------KL------------------ 130 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------Chh-------HH------------------
Confidence 99999999 99999999999999999999998887766543210 111 12
Q ss_pred CcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 177 DSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQ 256 (280)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~ 256 (280)
.+++..++.++..|+.++..+..++..|+..+..+|...|..|++.|+.++++
T Consensus 131 ---------------------------~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~ 183 (194)
T cd07307 131 ---------------------------AEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKE 183 (194)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 26777778889999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHH
Q psy8611 257 EFKDTMVKYLEELMG 271 (280)
Q Consensus 257 ~~~~~~~~~We~~~~ 271 (280)
+.+.|+.+.|
T Consensus 184 -----~~~~~~~l~~ 193 (194)
T cd07307 184 -----VLKILEQLLP 193 (194)
T ss_pred -----HHHHHHhhcC
Confidence 9999999876
No 28
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=99.50 E-value=2.6e-11 Score=105.76 Aligned_cols=198 Identities=21% Similarity=0.255 Sum_probs=169.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHhccccc-hhHHHHHHHHHHHHHH
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSA-------HLAKSLALVSNTEEH-ASVSRVVSTLGELYER 81 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~-------e~~~s~~~Ls~~E~~-~~ls~~l~~la~~~~~ 81 (280)
.|+.|+.....++.++..+.+|.+.+......-..+..... .+|.+|..++....+ .+++.++..++.+...
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 103 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQE 103 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHH
Confidence 48999999999999999999999999998887777777766 999999998875432 3478999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Q psy8611 82 TEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEV 161 (280)
Q Consensus 82 ~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~ 161 (280)
+..........-...+.+||..|+..+..++.....|.+...+|..+...+.+.+.... ++
T Consensus 104 i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~k~~~~~~------~~------------- 164 (229)
T PF03114_consen 104 IEEARKELESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLEKLRKKKS------KS------------- 164 (229)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTSS------BT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cc-------------
Confidence 98888776666566799999999999999999999999999999998887776544211 11
Q ss_pred HHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8611 162 RIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKD 241 (280)
Q Consensus 162 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~ 241 (280)
..+.+++.++..|+.++..++.+|..|...+..-|..
T Consensus 165 -------------------------------------------~~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~ 201 (229)
T PF03114_consen 165 -------------------------------------------SKEEKLEEAKEEFEALNEELKEELPKLFAKRQDILEP 201 (229)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred -------------------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1144567778999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 242 TMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 242 ~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
.|..|+..|..||++ +.+.|+.+.|.++
T Consensus 202 ~l~~~i~~q~~~~~~-----~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 202 CLQSFIEAQLQYFQQ-----LYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHhhC
Confidence 999999999999999 9999999999874
No 29
>smart00721 BAR BAR domain.
Probab=99.32 E-value=3.2e-09 Score=94.40 Aligned_cols=204 Identities=18% Similarity=0.214 Sum_probs=163.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHh-------ccccchhHHHHHHHHHHHH
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEALA---LARRDLSVYSAHLAKSLALVS-------NTEEHASVSRVVSTLGELY 79 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~---k~r~dl~~~~~e~~~s~~~Ls-------~~E~~~~ls~~l~~la~~~ 79 (280)
-|+.|++....++.++..+..|.+.+.... ..=+.+......|+.++..+. .+....++..+|..+|++.
T Consensus 25 ~D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (239)
T smart00721 25 LDEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEAL 104 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHH
Confidence 389999999999999999999999999888 555666666677777777763 2333446788999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q psy8611 80 ERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVT 159 (280)
Q Consensus 80 ~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~ 159 (280)
..+..............+..++..|...+..++.....|.+...+|..+...+.+.+.... ++. .. .+
T Consensus 105 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~------~~~----~~-kl- 172 (239)
T smart00721 105 KKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKE------KKK----DE-KL- 172 (239)
T ss_pred HHHHhhHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc------CCh----hh-hh-
Confidence 9998887766333333444555567789999999999999999999998888876654321 111 01 22
Q ss_pred HHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8611 160 EVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEF 239 (280)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~df 239 (280)
.+++...+.++..|+.+...+..|+-.|...+..-|
T Consensus 173 --------------------------------------------~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~ 208 (239)
T smart00721 173 --------------------------------------------AKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFF 208 (239)
T ss_pred --------------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 267777788999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 240 KDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 240 k~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
...|..|+..|..||++ +.+.|+.+.|.+.
T Consensus 209 ~~~l~~~~~aq~~y~~~-----~~~~l~~l~~~l~ 238 (239)
T smart00721 209 VNCLQALIEAQLNFHRE-----SYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhc
Confidence 99999999999999999 9999999999874
No 30
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.23 E-value=3.5e-08 Score=88.61 Aligned_cols=208 Identities=16% Similarity=0.142 Sum_probs=158.1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8611 8 LGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYA 87 (280)
Q Consensus 8 ~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~ 87 (280)
+-.|+.|++.-.....||...+.|++-+..-...=+.|..+...++..+..+...+.++.+..+....-.+...+...+.
T Consensus 7 ~T~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~~~~~~e~y~~~~~~l~~~~~ 86 (225)
T cd07590 7 KTVDRELEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDELRNLVEALDSVTTQLDKTVQ 86 (225)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999998887777777777777788888888866555544333333333333333333322
Q ss_pred HhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q psy8611 88 AEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLL 167 (280)
Q Consensus 88 ~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~ 167 (280)
.....=..++.+|+..|..++..|+.++..|...+..|..+.+.+.|..+... ++. .
T Consensus 87 ~~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~------k~~---~-------------- 143 (225)
T cd07590 87 ELVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKVEKLAEKEK------TGP---N-------------- 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc------CCh---h--------------
Confidence 21111122579999999999999999999999999999999998888765321 110 0
Q ss_pred hhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy8611 168 KTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYL 247 (280)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~ 247 (280)
..++..++...+.+++.|+.++..++.|+=.|-.-|+.=|.-.+..|+
T Consensus 144 --------------------------------~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~ 191 (225)
T cd07590 144 --------------------------------LAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALI 191 (225)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHH
Confidence 112236667778889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 248 EELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 248 e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
..|+.||.+ +-+....+-+.+.+
T Consensus 192 ~~Ql~f~~e-----~~k~~~~l~~~~d~ 214 (225)
T cd07590 192 KSQVLYYSQ-----STKIFTQLAPNLDN 214 (225)
T ss_pred HHHHHHHHH-----HHHHHHHHHHhhcc
Confidence 999999999 88888877776644
No 31
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=99.18 E-value=7.4e-08 Score=85.55 Aligned_cols=207 Identities=15% Similarity=0.144 Sum_probs=160.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8611 8 LGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYA 87 (280)
Q Consensus 8 ~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~ 87 (280)
...|...--+.+.|..-|-++..|...+...+.+-.-|-.-..+|+.++..-|+.|. ++++..|.+||+....+++...
T Consensus 7 ~~rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~-~~l~~~L~~fae~la~vqDYRq 85 (219)
T PF06730_consen 7 RSRDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTEN-PNLKLGLKNFAECLAKVQDYRQ 85 (219)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCC-ccHhhHHHHHHHHHHHHHHHHH
Confidence 344555555667788888888888888888887766666666799999999999986 4799999999999999998887
Q ss_pred HhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q psy8611 88 AEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLL 167 (280)
Q Consensus 88 ~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~ 167 (280)
.+...=......||..|-..|-..|+=+.....+ .+.-.++..+++|+..-+++|+
T Consensus 86 a~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~a-------r~kEikq~~~Leklr~k~psdr----------------- 141 (219)
T PF06730_consen 86 AEVERLEAKVVEPLSQYGTICKHARDELKKFNKA-------RNKEIKQLKQLEKLRQKNPSDR----------------- 141 (219)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHccCCccc-----------------
Confidence 7777666789999999999998888865554322 2222334444445544333332
Q ss_pred hhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy8611 168 KTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYL 247 (280)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~ 247 (280)
+.|..++..+..+.-+....+..+..-++.|++.|..|+|.+|.+|+
T Consensus 142 ---------------------------------~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv 188 (219)
T PF06730_consen 142 ---------------------------------QIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFV 188 (219)
T ss_pred ---------------------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12225555566667777888888999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhhhc
Q psy8611 248 EELMGYQQQEFKDTMVKYLEELMGYQQQVS 277 (280)
Q Consensus 248 e~~I~~~k~~~~~~~~~~We~~~~~~~~~~ 277 (280)
...+.|+-+ .++.|..-+..+++|+
T Consensus 189 ~iEM~fHaK-----ALEv~T~a~q~i~~id 213 (219)
T PF06730_consen 189 TIEMVFHAK-----ALEVYTAAYQDIQNID 213 (219)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHhcCC
Confidence 999999999 9999999999999885
No 32
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=99.14 E-value=1.1e-07 Score=84.58 Aligned_cols=200 Identities=13% Similarity=0.167 Sum_probs=159.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
-.|+.|++.-.....+|...+.|++-+..-...=+.|..+-..||.++..+-.-+. .....+ ..+.+....++.+
T Consensus 9 T~D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~--~~~~~~---~~v~e~~d~~~~~ 83 (211)
T cd07588 9 TRDEVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDW--PGREHL---ASIFEQLDLLWND 83 (211)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ccHHHH---HHHHHHHHHHHHH
Confidence 46999999999999999999999999998888888999999999999987764332 122333 3333333333333
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q psy8611 89 EAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLK 168 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~ 168 (280)
.-..=......|+..|+.++..|+..+..|...+.+|..+...+.+.++... .|
T Consensus 84 l~~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~~kL~~K~~-------kd------------------- 137 (211)
T cd07588 84 LEEKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNLEALKAKKK-------VD------------------- 137 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHhccc-------cc-------------------
Confidence 2222233688999999999999999999999999999999999888766432 11
Q ss_pred hhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 169 TLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
+..+.+++...+.+++.|+.++..++.|+=.|-.-|+.=|...++.++.
T Consensus 138 -------------------------------e~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~ 186 (211)
T cd07588 138 -------------------------------DQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFA 186 (211)
T ss_pred -------------------------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 1223377788889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 249 ELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 249 ~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
.+..||.+ +......+...+..
T Consensus 187 ~q~~F~~e-----~~~~~~~l~~~~~~ 208 (211)
T cd07588 187 AESVFHKE-----IGKVNTKLNDVMDG 208 (211)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHhh
Confidence 99999999 99888777765543
No 33
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=99.10 E-value=2.7e-07 Score=82.85 Aligned_cols=202 Identities=9% Similarity=0.123 Sum_probs=155.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH-
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYA- 87 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~- 87 (280)
-.|+.|++.......+|...+.|.+-+..-...=+.|..+-..+|.+|..+-....+............+.+.+.....
T Consensus 8 T~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~~~~~~~~y~~~v~~l~~~~~~ 87 (224)
T cd07591 8 TVDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKDGAMLSQEYKQAVEELDAETVK 87 (224)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999887655433222333344444444443221
Q ss_pred HhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q psy8611 88 AEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLL 167 (280)
Q Consensus 88 ~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~ 167 (280)
+.-..=......|+.+|..++..++.++..|...+.+|..+...+.|...... +. ..
T Consensus 88 el~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~~------kd------~~----------- 144 (224)
T cd07591 88 ELDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRKLIDKPS------ED------PT----------- 144 (224)
T ss_pred HHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHHHHhccc------CC------HH-----------
Confidence 11110112577999999999999999999999999999999988887654321 11 11
Q ss_pred hhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy8611 168 KTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYL 247 (280)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~ 247 (280)
+|.+++...+.+++.|+.++..++.|+=.|-.-|+.=|-..+..|+
T Consensus 145 ----------------------------------kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~ 190 (224)
T cd07591 145 ----------------------------------KLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFV 190 (224)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 2337778888899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 248 EELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 248 e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
..|..++.+ .-.....+.+.
T Consensus 191 ~iQ~~~~~~-----~y~~l~~~~~~ 210 (224)
T cd07591 191 KIQLRFFTE-----GYERLAQVQRY 210 (224)
T ss_pred HHHHHHHHH-----HHHHHHHHHhh
Confidence 999999988 55554444433
No 34
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=99.02 E-value=8.3e-07 Score=78.93 Aligned_cols=192 Identities=18% Similarity=0.115 Sum_probs=149.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh-----------HHHHHHHHHHHH
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHAS-----------VSRVVSTLGELY 79 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~-----------ls~~l~~la~~~ 79 (280)
|+.|+.....+..++..++.|.+.+......=+.|..+...|+.+|..+-....+.. ....+..+..++
T Consensus 1 D~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 80 (216)
T cd07599 1 DEQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKAL 80 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHH
Confidence 788999999999999999999999999998888899999999999999887432211 113444455555
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCchhHHHHHHHH
Q psy8611 80 ERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNK-KREAKVKLELAGRSDKSIQAAHEV 158 (280)
Q Consensus 80 ~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~K-kr~~~~kL~~~~~~dk~~~~~~Ei 158 (280)
..+.......-..=......|+.+|..++..++.++..|.....+|..+...+.+ .+... .++.
T Consensus 81 ~~l~~~~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~------~~~~--------- 145 (216)
T cd07599 81 EELKKELLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKK------ELSL--------- 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC------CCCh---------
Confidence 5554433222222223688999999999999999999999999999999888887 32210 1111
Q ss_pred HHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8611 159 TEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQE 238 (280)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~d 238 (280)
....++.+++.+.+.+++.|+.++..++.|+-.|-.-+..=
T Consensus 146 ---------------------------------------kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~ 186 (216)
T cd07599 146 ---------------------------------------KDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEF 186 (216)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 11233448888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy8611 239 FKDTMVKYLEELMGYQQQ 256 (280)
Q Consensus 239 fk~~l~~~~e~~I~~~k~ 256 (280)
|-..+..|+-.|..+|..
T Consensus 187 ~~~~~~~~~~~ql~~~~~ 204 (216)
T cd07599 187 LPPLFKSFYYIQLNIYYT 204 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998888
No 35
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=98.97 E-value=1.4e-06 Score=77.41 Aligned_cols=199 Identities=16% Similarity=0.138 Sum_probs=153.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHH-HHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERT-EGVYA 87 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~-~~~~~ 87 (280)
-.|+.|++.-.....||..-+.|++-+..-...=+.|..+-..|+.++..+-.-+.+ ....+..+++....+ .++..
T Consensus 9 T~D~~Fe~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~--g~~~~~~~~~~~d~~~~dl~~ 86 (211)
T cd07611 9 TKDEQFEEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWY--GRDDVKTIGEKCDLLWEDFHQ 86 (211)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHhhHHHHHHHHHH
Confidence 468999999999999999999999888777777778888888999999877643321 112233334333321 12222
Q ss_pred HhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q psy8611 88 AEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLL 167 (280)
Q Consensus 88 ~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~ 167 (280)
.... ...+|+..|+.++..|+.++..|...+.+|..+.+.+.|.++.+ ++ |
T Consensus 87 ~lv~----~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~------~k-D------------------ 137 (211)
T cd07611 87 KLVD----GALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQTSK------RK-D------------------ 137 (211)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc------cc-c------------------
Confidence 2111 26899999999999999999999999999999999998877643 11 1
Q ss_pred hhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy8611 168 KTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYL 247 (280)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~ 247 (280)
+.+|.+++..++.+++.|+.++..++.|+=.|-.-|+.=|-.+++.++
T Consensus 138 --------------------------------e~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~ 185 (211)
T cd07611 138 --------------------------------EGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVS 185 (211)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHH
Confidence 122336777778889999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 248 EELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 248 e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
..+..|+.+ +...-..+...+..
T Consensus 186 ~~q~~f~~E-----~~k~~~~l~~~~~~ 208 (211)
T cd07611 186 SLEAKFHKE-----ISVLCHKLYEVMTK 208 (211)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHh
Confidence 999999999 88877776655543
No 36
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=98.96 E-value=1.2e-06 Score=77.79 Aligned_cols=200 Identities=18% Similarity=0.151 Sum_probs=150.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
-.|+.|+..-.....||..-+.|++-+..=...=+.|..+-..|+.++..+-.-+.+ + ...+..+.+....+.+-+..
T Consensus 9 T~D~~Fe~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~-~-~~~~~~v~e~~d~~~~~~~~ 86 (211)
T cd07612 9 TKDEQFEQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWD-G-HEDLGAIVEGEDLLWNDYEA 86 (211)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-c-ccHHHHHHhccHHHHHHHHH
Confidence 468999999999999999999888888765555556777777788888776533221 1 22333443333333333322
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q psy8611 89 EAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLK 168 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~ 168 (280)
.=..+..+||..|+.+...|+..+..|...+..|..+...+.+.++.+.| |
T Consensus 87 ---~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~~kl~~k~~k-------D------------------- 137 (211)
T cd07612 87 ---KLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHLEALQNAKKK-------D------------------- 137 (211)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc-------c-------------------
Confidence 11123689999999999999999999999999999999999887764321 1
Q ss_pred hhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 169 TLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
+.+|.+++..++.+++.|+.++..++.|+=.|-.-|+.=|-.+++.++.
T Consensus 138 -------------------------------~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~ 186 (211)
T cd07612 138 -------------------------------DAKIAKAEEEFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISN 186 (211)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1223367777788899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 249 ELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 249 ~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
.|..|+.+ +......+...+..
T Consensus 187 ~q~~F~~E-----~~k~~~~l~~~~~~ 208 (211)
T cd07612 187 LRDTFYKE-----MSKLNHDLYNVMKK 208 (211)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHh
Confidence 99999999 98887777665543
No 37
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=98.84 E-value=9.6e-06 Score=72.48 Aligned_cols=201 Identities=13% Similarity=0.127 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc---hhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy8611 19 LLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEH---ASVSRVVSTLGELYERTEGVYAAEAGADLN 95 (280)
Q Consensus 19 ~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~---~~ls~~l~~la~~~~~~~~~~~~~a~~e~~ 95 (280)
+.++.++..|..|.|.+..+...-+++..+...|+.++..|+..-.+ +.++.+|..|+.+...+.........+=..
T Consensus 9 e~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~ 88 (215)
T cd07604 9 ESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLMQNLNN 88 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888877888888888999999999975322 248999999999999999999988888888
Q ss_pred HHHHhHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccC
Q psy8611 96 ILAELFRDYVCL-IAAVK-DTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNC 173 (280)
Q Consensus 96 ~l~~~l~eY~~~-i~svK-~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~ 173 (280)
.+..||.-++.- |..|| +.=+.=++++..|..+...+.+.|-...+...-.++ |+.
T Consensus 89 ~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~~~~r~--------e~~-------------- 146 (215)
T cd07604 89 IIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEAGMIRT--------EIT-------------- 146 (215)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhcch--------hhh--------------
Confidence 899999998877 88777 765666677777776654444332221111000011 110
Q ss_pred CCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 174 CPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGY 253 (280)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~ 253 (280)
..++...++..++.|...+-...--+.-.+..|.-+|-..|..|..+|+.|
T Consensus 147 -----------------------------~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~f 197 (215)
T cd07604 147 -----------------------------GAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSY 197 (215)
T ss_pred -----------------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 015566667778888888877777888899999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHhh
Q psy8611 254 QQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 254 ~k~~~~~~~~~~We~~~~~~~~ 275 (280)
|++ ..+..+.|-|.++.
T Consensus 198 F~~-----G~~ll~~l~p~~~~ 214 (215)
T cd07604 198 FQD-----GLKVIEHFRPYIEK 214 (215)
T ss_pred HHH-----HHHHHHHHHhhhhc
Confidence 999 99999999998764
No 38
>KOG2528|consensus
Probab=98.82 E-value=4.4e-08 Score=94.07 Aligned_cols=123 Identities=11% Similarity=0.189 Sum_probs=100.5
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhccc------cchhHHHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARR-DLSVYSAHLAKSLALVSNTE------EHASVSRVVSTLGELY 79 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~-dl~~~~~e~~~s~~~Ls~~E------~~~~ls~~l~~la~~~ 79 (280)
..+.|..-+.-+.++..||+.++.|..+.....++.. -+-..+..+|.+|..|+..- .+.+|+.++...|.++
T Consensus 325 ~~~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~k~~~~~~kke~qk~g~a~~~l~~~f~~d~~~~s~~L~~ai~~~g~~y 404 (490)
T KOG2528|consen 325 LQEVEMQVERFKRFTKKMDDAVRQLNTTANEFWKRKVGGFKKEYQKMGSAFQTLAQAFEIDPTVDSRPLNEAIGLTGDAY 404 (490)
T ss_pred hHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHhcccchHHHHHHHHHHHHHHHhhhcCccccccchhhhhhhhhHHH
Confidence 3455666677788999999999999999988885521 12244557888888888741 1457999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 80 ERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAK 139 (280)
Q Consensus 80 ~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~ 139 (280)
+.|++++++|+.+|+.++++.|+.|.+.++.++|+++.. ..++.|.+++.
T Consensus 405 ~~Ig~lfa~qpk~Dl~p~~d~l~~y~G~l~nfpDII~~h----------K~A~~k~kes~ 454 (490)
T KOG2528|consen 405 HEIGELFAEQPKQDLDPVMDLLVLYQGHLQNFPDIIHVH----------KGALAKVKESE 454 (490)
T ss_pred HHHHHHhhcccccchhHHHHHHHHhhcccccccchhhhh----------HHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 56666777665
No 39
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.79 E-value=9.9e-06 Score=72.35 Aligned_cols=195 Identities=8% Similarity=0.094 Sum_probs=144.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-----cccchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8611 19 LLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-----TEEHASVSRVVSTLGELYERTEGVYAAEAGAD 93 (280)
Q Consensus 19 ~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-----~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e 93 (280)
.-++.|+..++.|.+....+...-++++.+...|+.++..++. +...+.+..+|..|+.+...+...+.....+=
T Consensus 9 ~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~ 88 (215)
T cd07601 9 EDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQL 88 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999952 22223455899999999999999998888877
Q ss_pred hhHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhcc
Q psy8611 94 LNILAELFRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFN 172 (280)
Q Consensus 94 ~~~l~~~l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~ 172 (280)
...+..||..++ ..|..||+.=..=++++..|.+|..-.. +|......++. .
T Consensus 89 ~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~al~K~~-------~l~k~k~~~~~------~-------------- 141 (215)
T cd07601 89 ADTVLHPISQFMESDLAEIMTLKELFKAASNDHDGVLSKYS-------RLSKKRENTKV------K-------------- 141 (215)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHh-------hCCcCCCchHH------H--------------
Confidence 778888888887 7788888754444555555554333222 12111001111 1
Q ss_pred CCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 173 CCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMG 252 (280)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~ 252 (280)
.+++..+...++.|...+=..---+.-.+..|.-+|-..|..|+.+|+.
T Consensus 142 -------------------------------~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~t 190 (215)
T cd07601 142 -------------------------------IEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIA 190 (215)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1566667777888888888888889999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHH-HHHHHHhhh
Q psy8611 253 YQQQEFKDTMVKYLE-ELMGYQQQV 276 (280)
Q Consensus 253 ~~k~~~~~~~~~~We-~~~~~~~~~ 276 (280)
|+++ ..+... .+-|-+..+
T Consensus 191 ff~q-----G~ell~~~~~pf~~~v 210 (215)
T cd07601 191 FFKM-----GPEMFTRQTEEFLSDI 210 (215)
T ss_pred HHHH-----HHHHHHHHHHHHHHHH
Confidence 9999 655554 555554443
No 40
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=98.75 E-value=1.6e-05 Score=70.09 Aligned_cols=194 Identities=13% Similarity=0.126 Sum_probs=146.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEA 90 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a 90 (280)
|.+++.+.+.+......-+.|.+.+..+.++=..++....+||.+|..||.-++ .++.++..+|+++..+..--..
T Consensus 1 D~eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p--~l~~af~~~aet~k~l~kng~~-- 76 (201)
T cd07660 1 DLELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSP--ELQEEFTYNAETQKLLCKNGET-- 76 (201)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHhHHH--
Confidence 678889999999999999999999999999999999999999999999998664 6899999999999887765543
Q ss_pred hhhhhHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Q psy8611 91 GADLNILAELFRDYVCLIAA-----VKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKY 165 (280)
Q Consensus 91 ~~e~~~l~~~l~eY~~~i~s-----vK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~ 165 (280)
|..+|..++.-++. +.|++-. ...|+.|.-+..--+...+.++..++
T Consensus 77 ------Ll~al~~f~s~l~T~~~kai~DT~lT----I~~ye~aR~EYdayr~D~ee~~~~~~------------------ 128 (201)
T cd07660 77 ------LLGALNFFVSSLNTLVNKTMEDTLMT----VKQYESARIEYDAYRNDLEALNLGPR------------------ 128 (201)
T ss_pred ------HHHHHHHHHHHHHHHHHhhccHHHHH----HHHHHhhhHhHHHHhccHHHcccCCC------------------
Confidence 56666665554443 3333222 33444444444443322211111111
Q ss_pred HHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy8611 166 LLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVK 245 (280)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~ 245 (280)
.. ....+++.++.+++.++.+|+..-.-|..-|+-++..|+.+|..-|.-
T Consensus 129 -----------------------------~~-~~l~r~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~ 178 (201)
T cd07660 129 -----------------------------DA-ATSARLEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLL 178 (201)
T ss_pred -----------------------------cc-chHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 00 011234578999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 246 YLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 246 ~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
|......||.. +.+..+..+.
T Consensus 179 f~~a~~ay~sg-----n~~~L~~~~~ 199 (201)
T cd07660 179 FHNAISAYFSG-----NQKQLEQTLK 199 (201)
T ss_pred HHHHHHHHHHh-----HHHHHHHHHh
Confidence 99999999999 9888887664
No 41
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=98.73 E-value=3.4e-05 Score=69.59 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=139.3
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8611 8 LGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYA 87 (280)
Q Consensus 8 ~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~ 87 (280)
.-.|+.++.+.+-+......-.+|.+.+..+..+=..++....+||..|..+|.-|+++.++..|..+|+++..++..-.
T Consensus 29 it~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~~~ 108 (229)
T PF06456_consen 29 ITVDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQGE 108 (229)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999888899999999999998777654
Q ss_pred HhhhhhhhHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q psy8611 88 AEAGADLNILAELFRDYVCLIA-----AVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVR 162 (280)
Q Consensus 88 ~~a~~e~~~l~~~l~eY~~~i~-----svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~ 162 (280)
. |..+|..++.-+. +|.|++.. ...|+.|.-+..--+.....+..+-.+
T Consensus 109 ~--------L~~~l~~~~~~l~Tf~~kaI~DT~~T----ik~ye~aR~EY~ay~~~lke~~~e~~~-------------- 162 (229)
T PF06456_consen 109 T--------LLKALKRFLSDLNTFRNKAIPDTLLT----IKKYEDARFEYDAYRLWLKEMSDELDP-------------- 162 (229)
T ss_dssp H--------HHHHHHHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--TST--------------
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcccCc--------------
Confidence 3 4444444333332 23333222 334444444444443333222211111
Q ss_pred HHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy8611 163 IKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDT 242 (280)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~ 242 (280)
...+ .....+..+..+...+.+|+....-+..=|+-.+..|+.+|...
T Consensus 163 -------------~~~~-------------------~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~q 210 (229)
T PF06456_consen 163 -------------DTAK-------------------QEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQ 210 (229)
T ss_dssp -------------SSTT-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hhhc-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 1000 02233477788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q psy8611 243 MVKYLEELMGYQQQ 256 (280)
Q Consensus 243 l~~~~e~~I~~~k~ 256 (280)
|.-|......|+.+
T Consensus 211 L~~~~~al~~y~~~ 224 (229)
T PF06456_consen 211 LVLFQNALAAYFSG 224 (229)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988887
No 42
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=98.73 E-value=6.5e-06 Score=73.54 Aligned_cols=195 Identities=14% Similarity=0.146 Sum_probs=132.3
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhh------HHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALAL---ARRD------LSVYSAHLAKSLALVSNT-EEHASVSRVVSTLGEL 78 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k---~r~d------l~~~~~e~~~s~~~Ls~~-E~~~~ls~~l~~la~~ 78 (280)
+-|+.|.+.-..++.....+..|++....-.. ++++ =.....-+|.++..-|.. .+..+++.+|..+|++
T Consensus 4 ~l~ddf~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a 83 (215)
T cd07593 4 TLSEEFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLSKLGRA 83 (215)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Confidence 44788999888898888888777777665544 3322 122445667766655552 3345799999999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q psy8611 79 YERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEV 158 (280)
Q Consensus 79 ~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei 158 (280)
..+|+.........-...|..||..++ .-+|++-+.|-++ ++..=++...|.. +....+.+
T Consensus 84 ~~kia~~q~~f~~~~~~~~l~pL~~~l---~~~k~i~k~RKkL----e~rRLdyD~~ksk---~~kak~~~--------- 144 (215)
T cd07593 84 HCKIGTLQEEFADRLSDTFLANIERSL---AEMKEYHSARKKL----ESRRLAYDAALTK---SQKAKKED--------- 144 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHH---HHhccccc---------
Confidence 999999887766666667777877755 2466665555322 1111122222111 11110110
Q ss_pred HHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8611 159 TEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQE 238 (280)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~d 238 (280)
. .++..++.++.+|+...+.+..-|..| .+.-.+
T Consensus 145 ~---------------------------------------------~~eeElr~Ae~kfees~E~a~~~M~~i-~~~e~e 178 (215)
T cd07593 145 S---------------------------------------------RLEEELRRAKAKYEESSEDVEARMVAI-KESEAD 178 (215)
T ss_pred h---------------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcChH
Confidence 1 456667788899999999999999988 455678
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 239 FKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 239 fk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
+-..|.+|++.|+.||++ +.+..+.+....
T Consensus 179 ~~~~L~~lv~AQl~Yh~q-----~~e~L~~l~~~~ 208 (215)
T cd07593 179 QYRDLTDLLDAELDYHQQ-----SLDVLREVRQSW 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhc
Confidence 999999999999999999 999998887654
No 43
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=98.72 E-value=3.5e-05 Score=68.12 Aligned_cols=195 Identities=14% Similarity=0.103 Sum_probs=140.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEA 90 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a 90 (280)
|..++.+.+.+......=..|.+.+..+..+=.+|+....+||..|..+|.-++... +..|..+|+++..+...-..
T Consensus 1 D~eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a-~~~f~~~~~a~r~~~k~g~~-- 77 (203)
T cd00011 1 DLELELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELA-GEEFGYNAEAQKLLCKNGET-- 77 (203)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHhHHH--
Confidence 677888888888888888999999999999999999999999999999999987544 79999999999887755433
Q ss_pred hhhhhHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Q psy8611 91 GADLNILAELFRDYVCLIA-----AVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKY 165 (280)
Q Consensus 91 ~~e~~~l~~~l~eY~~~i~-----svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~ 165 (280)
|..+|..++.-++ +|+|++.. ...|+.|.-+..--+-....+.
T Consensus 78 ------ll~~l~~~~~~l~T~~~kai~DT~lT----I~~ye~aR~EY~a~~l~~ke~~---------------------- 125 (203)
T cd00011 78 ------LLGAVNFFVSSINTLVTKAIEDTLLT----VKQYEAARLEYDAYRLDLKELS---------------------- 125 (203)
T ss_pred ------HHHHHHHHHHHHHHHHhhhcchHHHH----HHHHHHHHHhHHHHHHHHHHhc----------------------
Confidence 4455555444443 33344332 3334444444433333221121
Q ss_pred HHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy8611 166 LLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVK 245 (280)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~ 245 (280)
..|.+.. ...-.+++.+++.++.++.+|+..-.-+..-|+-.+..|+.+|...|.-
T Consensus 126 -------~e~~~~~-----------------~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~ 181 (203)
T cd00011 126 -------LEPRDDT-----------------AGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLL 181 (203)
T ss_pred -------ccCCccc-----------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1121110 0112234578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHH
Q psy8611 246 YLEELMGYQQQEFKDTMVKYLEEL 269 (280)
Q Consensus 246 ~~e~~I~~~k~~~~~~~~~~We~~ 269 (280)
|......|+.+ +....+..
T Consensus 182 ~~~al~~y~~~-----~~~~l~~~ 200 (203)
T cd00011 182 FHNTVSAYFAG-----NQKVLEQT 200 (203)
T ss_pred HHHHHHHHHHH-----hHHHHHHH
Confidence 99988888888 77766654
No 44
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.71 E-value=2.8e-05 Score=68.75 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8611 15 EDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTE-EHASVSRVVSTLGELYERTEGVYAAEAGAD 93 (280)
Q Consensus 15 ~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E-~~~~ls~~l~~la~~~~~~~~~~~~~a~~e 93 (280)
.+.-..++.|+..|+.|.|....+...-+.+..+-..|+.++..|+..- ..+.++.+|..|+.+...+.........+-
T Consensus 5 ~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~ 84 (200)
T cd07603 5 EQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQA 84 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999998888888888889999999999743 335788999999999999999988777666
Q ss_pred hhHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhcc
Q psy8611 94 LNILAELFRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFN 172 (280)
Q Consensus 94 ~~~l~~~l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~ 172 (280)
...+..||..++ .-|..||++=..=++++..|..+. +....+... ++ .++
T Consensus 85 ~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~al-------~k~~~~~K~-K~-------~~~-------------- 135 (200)
T cd07603 85 QRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNAL-------VKNAQAPRS-KP-------QEA-------------- 135 (200)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHhccCCC-CH-------HHH--------------
Confidence 667777877654 345666664333333333333322 211111110 11 122
Q ss_pred CCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 173 CCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMG 252 (280)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~ 252 (280)
.++...+...++.|...+=...-.+.-.+..|.-||-..|..|..+|.-
T Consensus 136 -------------------------------~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~t 184 (200)
T cd07603 136 -------------------------------EEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFT 184 (200)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2666777788888888888888888889999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHH
Q psy8611 253 YQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 253 ~~k~~~~~~~~~~We~~~~~ 272 (280)
||++ ..+.|+.+-|.
T Consensus 185 ff~q-----G~el~~dl~py 199 (200)
T cd07603 185 FFHQ-----GYDLLEDLEPY 199 (200)
T ss_pred HHHh-----HHHHHHhhcCc
Confidence 9999 99999998774
No 45
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.67 E-value=4.2e-05 Score=67.64 Aligned_cols=192 Identities=14% Similarity=0.153 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8611 16 DKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT-EEHASVSRVVSTLGELYERTEGVYAAEAGADL 94 (280)
Q Consensus 16 ~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~-E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~ 94 (280)
+.-.-++.||+.|..|.+.+..+...-+.+.++...|+.++..+... -..+.++++|..||++...+.........+-.
T Consensus 6 ~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e 85 (200)
T cd07637 6 EVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFDQAQ 85 (200)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456788888888888888888888889999999999999988874 23356889999999999999999887776666
Q ss_pred hHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccC
Q psy8611 95 NILAELFRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNC 173 (280)
Q Consensus 95 ~~l~~~l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~ 173 (280)
..+.+||..|+ .-|..+|++=..=++++..|..+.. | .. .+. ..++ .++
T Consensus 86 ~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~---k-~~---~~k-~kk~-------~~l--------------- 135 (200)
T cd07637 86 RSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALV---K-NA---QAP-RHKP-------HEV--------------- 135 (200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---H-Hh---hcC-CCCh-------HHH---------------
Confidence 67777777654 2456666642222223333322221 1 00 010 0111 112
Q ss_pred CCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 174 CPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGY 253 (280)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~ 253 (280)
.++...+..+++.|...+=..--.+...+..|.-+|-..|..|+.+|+-|
T Consensus 136 ------------------------------~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tf 185 (200)
T cd07637 136 ------------------------------EEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTF 185 (200)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 26777778888899988888888899999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHH
Q psy8611 254 QQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 254 ~k~~~~~~~~~~We~~~~~ 272 (280)
|++ ..+....+-|.
T Consensus 186 f~q-----G~el~~~~~py 199 (200)
T cd07637 186 FQQ-----GYSLLHELDPY 199 (200)
T ss_pred HHh-----HHHHHHhhccc
Confidence 999 88888877663
No 46
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.67 E-value=3.3e-05 Score=68.38 Aligned_cols=190 Identities=11% Similarity=0.077 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHH----HHHHHHHHHHHHHHHHHHHhhhhh
Q psy8611 18 GLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVS----RVVSTLGELYERTEGVYAAEAGAD 93 (280)
Q Consensus 18 k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls----~~l~~la~~~~~~~~~~~~~a~~e 93 (280)
-+-++.|++.+..|.+....+...-+++..+-..|+.++..++.....+.+. .+|..|+.+...+...+.....+-
T Consensus 7 E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~L~~q~ 86 (202)
T cd07606 7 EGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEVLRSQV 86 (202)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888878888888889999999998654333332 479999999999988887776666
Q ss_pred hhHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhcc
Q psy8611 94 LNILAELFRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFN 172 (280)
Q Consensus 94 ~~~l~~~l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~ 172 (280)
...+..||..++ ..|..||++=..=++++..|.+|..-.. ++....+++.+.
T Consensus 87 ~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~al~K~~-------~l~k~~k~~~~~-------------------- 139 (202)
T cd07606 87 EHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQARSKFL-------SLTKDAKPEILA-------------------- 139 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hccccCchHHHH--------------------
Confidence 667777777766 4566677654444555555554433222 222222333222
Q ss_pred CCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 173 CCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMG 252 (280)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~ 252 (280)
+++..+...++.|...+-..---+...+..|.-+|-..|..|+.+|+-
T Consensus 140 --------------------------------ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~t 187 (202)
T cd07606 140 --------------------------------AAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLA 187 (202)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556667788888887777788888999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHH
Q psy8611 253 YQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 253 ~~k~~~~~~~~~~We~~~~ 271 (280)
||++ ..+....+-|
T Consensus 188 FF~q-----G~ell~~l~p 201 (202)
T cd07606 188 FFKS-----GYELLRQLEP 201 (202)
T ss_pred HHHH-----HHHHHHhcCC
Confidence 9999 8887776655
No 47
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.65 E-value=4.8e-05 Score=67.22 Aligned_cols=192 Identities=12% Similarity=0.071 Sum_probs=142.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8611 16 DKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-TEEHASVSRVVSTLGELYERTEGVYAAEAGADL 94 (280)
Q Consensus 16 ~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~ 94 (280)
+.-.-++.|+..|+.|.+....+...-+++..+-..|+.++..++. +...+.++.+|..|+.+...+...+...-.+-.
T Consensus 6 ~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~ 85 (200)
T cd07639 6 EVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQ 85 (200)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445678888888888888888888888999999999999999997 555567999999999999998777766554444
Q ss_pred hHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccC
Q psy8611 95 NILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNC 173 (280)
Q Consensus 95 ~~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~ 173 (280)
..+..||..++. -|..||++=..=+|.+..|.+|..-.. ++. -++ ..++.
T Consensus 86 ~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~al~K~~-------~~~-k~k-------~~e~~-------------- 136 (200)
T cd07639 86 FSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAALQHNA-------ETP-RRK-------AQEVE-------------- 136 (200)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHHHHHHh-------hcc-ccc-------hHHHH--------------
Confidence 455566655442 456677765555566666655511111 111 001 12333
Q ss_pred CCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 174 CPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGY 253 (280)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~ 253 (280)
++...+...+.-|...+=....-|...+..|.-||-..|..|+.+|..|
T Consensus 137 -------------------------------Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tf 185 (200)
T cd07639 137 -------------------------------EAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASF 185 (200)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777788888899888888888899999999999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHH
Q psy8611 254 QQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 254 ~k~~~~~~~~~~We~~~~~ 272 (280)
|++ ..+....+-|.
T Consensus 186 F~q-----G~ell~~l~~y 199 (200)
T cd07639 186 FQQ-----GHEALSALHQY 199 (200)
T ss_pred HHH-----HHHHHHhhccc
Confidence 999 88887777663
No 48
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=98.62 E-value=6.3e-05 Score=66.16 Aligned_cols=178 Identities=10% Similarity=0.095 Sum_probs=138.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH-HH
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVY-AA 88 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~-~~ 88 (280)
.|+.|++.-.....+|.+++.|.+-+..-...=+++......++.++..+.....+. .-.....+..+...+.... .+
T Consensus 3 ~D~~fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~~~~~~d~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~e 81 (195)
T cd07589 3 KDKEFDELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLALEVVLDLYPSNHPR-LESKWERFRRVVRGISSKALPE 81 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChh-hHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999998888777777777778888888887644322 2223344444444444443 22
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q psy8611 89 EAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLK 168 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~ 168 (280)
.-..=......|+..|+.++..++.++..|...+.+|......+.| + .
T Consensus 82 ~~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~~k-------~----------------~--------- 129 (195)
T cd07589 82 FKSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKKER-------G----------------G--------- 129 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHHHh-------h----------------c---------
Confidence 2222233688999999999999999999999999999987776544 0 0
Q ss_pred hhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 169 TLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
+++...+.+++.|+.++..++.|+=+|-.-+..=+...+..|+.
T Consensus 130 ------------------------------------k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~ 173 (195)
T cd07589 130 ------------------------------------KVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVE 173 (195)
T ss_pred ------------------------------------chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445577789999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q psy8611 249 ELMGYQQQ 256 (280)
Q Consensus 249 ~~I~~~k~ 256 (280)
.|..++..
T Consensus 174 ~Q~~~~~~ 181 (195)
T cd07589 174 LQRDLYDT 181 (195)
T ss_pred HHHHHHHH
Confidence 99998887
No 49
>KOG3771|consensus
Probab=98.58 E-value=3e-05 Score=75.40 Aligned_cols=199 Identities=16% Similarity=0.193 Sum_probs=153.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
-.|+.|+..-..+..++..=+.|.+-+..-...-+.|...-..|+.++..+-..+. .-...+..++ +....++.+
T Consensus 27 TkD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~--~g~~~l~~v~---~~~d~l~~d 101 (460)
T KOG3771|consen 27 TKDEQFEQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDW--PGRDYLQAVA---DNDDLLWKD 101 (460)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--ccHHHHHHHH---HHHHHHHHH
Confidence 45899999988888888888888887777666666777666677777766544322 2334444443 333444444
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q psy8611 89 EAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLK 168 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~ 168 (280)
....-..+...|+..|+.+.-.++..+..|...+.+|..+...+.+.+..+. +. ...+.
T Consensus 102 ~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~------kd------~~k~~--------- 160 (460)
T KOG3771|consen 102 LDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKK------KD------EAKLA--------- 160 (460)
T ss_pred HHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcC------CC------hhhhH---------
Confidence 4444444678999999999999999999999999999999999988877652 11 12222
Q ss_pred hhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 169 TLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
+++.+.+.+++.|+..+..++.|+=.+-..|+.-|..+++.+..
T Consensus 161 ------------------------------------KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~ 204 (460)
T KOG3771|consen 161 ------------------------------------KAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFN 204 (460)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHH
Confidence 67777888999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 249 ELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 249 ~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
.++-||.+ |.....++...+.
T Consensus 205 ~q~vf~~E-----mskl~~~L~~v~~ 225 (460)
T KOG3771|consen 205 LQLVFHKE-----MSKLYKNLYDVLD 225 (460)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHH
Confidence 99999999 9777777766554
No 50
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=98.57 E-value=7.3e-05 Score=66.40 Aligned_cols=191 Identities=15% Similarity=0.167 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-----c--ccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 18 GLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-----T--EEHASVSRVVSTLGELYERTEGVYAAEA 90 (280)
Q Consensus 18 k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-----~--E~~~~ls~~l~~la~~~~~~~~~~~~~a 90 (280)
-.-++.++..|+.|.|-...+...-+++..+...|+.++..++- . +....++.+|..||.+...+...+....
T Consensus 8 E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r~~L~ 87 (207)
T cd07602 8 EAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDERDRML 87 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888888888888888889999988882 1 1112588999999999999999988777
Q ss_pred hhhhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhh
Q psy8611 91 GADLNILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKT 169 (280)
Q Consensus 91 ~~e~~~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~ 169 (280)
.+=...+..||..++. -|+.||+.=..=++.-..|..|.. ....|....+
T Consensus 88 ~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~al~-------k~~~lsk~kk---------------------- 138 (207)
T cd07602 88 ENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCSSLE-------KHLNLSTKKK---------------------- 138 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhccCCCCC----------------------
Confidence 7766677777777654 456666642222222222222211 1111111111
Q ss_pred hccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 170 LFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
...+.+++..+...++.|...+=..---+...+..|.-+|-..|..|+.+
T Consensus 139 ------------------------------~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a 188 (207)
T cd07602 139 ------------------------------ENQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYG 188 (207)
T ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223777777888888988888888889999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 250 LMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 250 ~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
|+-||++ ..+....+-|.
T Consensus 189 ~~tff~q-----G~el~~d~~py 206 (207)
T cd07602 189 WLTFYHQ-----GHEVAKDFKPY 206 (207)
T ss_pred HHHHHHh-----HHHHHHhhccc
Confidence 9999999 88887777663
No 51
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.56 E-value=6.2e-05 Score=75.29 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=69.0
Q ss_pred cCCCCchhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy8611 190 SGGFRSDICDE-------QVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTM 262 (280)
Q Consensus 190 ~~g~~~~~~~~-------~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~ 262 (280)
.+|+.++..|. +.+..++...+.+.+.+..|++.++.|+.+|...|..|++.++..|++.+|+++++ +
T Consensus 436 ~~~~~~e~sr~k~~~~Lqq~~~~l~~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~-----~ 510 (524)
T COG5391 436 LRDFVQEKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEE-----N 510 (524)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----H
Confidence 67777776664 45555666667777999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHHHh
Q psy8611 263 VKYLEELMGYQQ 274 (280)
Q Consensus 263 ~~~We~~~~~~~ 274 (280)
++.|..+...+.
T Consensus 511 Le~W~~v~~~l~ 522 (524)
T COG5391 511 LEIWKSVKEQLD 522 (524)
T ss_pred HHHHHHHHHhhh
Confidence 999999877654
No 52
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=98.55 E-value=3.6e-05 Score=70.10 Aligned_cols=203 Identities=11% Similarity=0.106 Sum_probs=124.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhH---HHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHH
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEALAL----ARRDL---SVYSAHLAKSLALVSN-TEEHASVSRVVSTLGELYER 81 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k----~r~dl---~~~~~e~~~s~~~Ls~-~E~~~~ls~~l~~la~~~~~ 81 (280)
-|+.|...-..+|.+-.-+.++++....+.. .|.+. .....-+|.++..-|. +.+..+++.+|..+|++..+
T Consensus 13 l~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~rk~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~~~ 92 (244)
T cd07595 13 LSDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLKKLPEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQNT 92 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhccCcHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 4666766655665555444444442111100 12222 2234456665544443 33445799999999999999
Q ss_pred HHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q psy8611 82 TEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKI---YQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEV 158 (280)
Q Consensus 82 ~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~---~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei 158 (280)
|+.....+-..-...|.+||..++. ..+|.+-+.|-++ ..+|..+...+.+.+-. ....+.+.|+.
T Consensus 93 ia~~~~~~d~~i~~~fl~pL~~~le--~dik~i~k~RKkLe~~RLd~D~~k~r~~ka~k~---~~~~~~~~K~~------ 161 (244)
T cd07595 93 LARELVDHEMNVEEDVLSPLQNILE--VEIPNIQKQKKRLSKLVLDMDSARSRYNAAHKS---SGGQGAAAKVD------ 161 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccc---ccccccccccc------
Confidence 9999877666666678888888443 4556665555332 22222222222111000 00000012211
Q ss_pred HHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8611 159 TEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQE 238 (280)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~d 238 (280)
.++..++.++.+|+...+..-..|-.| .++-.|
T Consensus 162 ----------------------------------------------~l~eE~e~ae~k~e~~~e~~~~~M~~~-l~~E~e 194 (244)
T cd07595 162 ----------------------------------------------ALKDEYEEAELKLEQCRDALATDMYEF-LAKEAE 194 (244)
T ss_pred ----------------------------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccHH
Confidence 344555667788888888888888887 566789
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 239 FKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 239 fk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
+-..|.+|++.|+.||++ +.+..+.+.|.++.
T Consensus 195 ~~~~l~~lv~aQl~YH~~-----a~e~L~~l~~~l~~ 226 (244)
T cd07595 195 IASYLIDLIEAQREYHRT-----ALSVLEAVLPELQE 226 (244)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 999999999999999999 99999999999864
No 53
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.50 E-value=0.00022 Score=63.09 Aligned_cols=193 Identities=12% Similarity=0.109 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8611 15 EDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE-HASVSRVVSTLGELYERTEGVYAAEAGAD 93 (280)
Q Consensus 15 ~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~-~~~ls~~l~~la~~~~~~~~~~~~~a~~e 93 (280)
.+.-..++.|++.|..|.+....+...-++++.+...|+.++..++.... .+-++.+|..|+.+...+...+.....+-
T Consensus 5 ~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~ 84 (200)
T cd07638 5 EDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQA 84 (200)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999974321 23578999999999999998887766665
Q ss_pred hhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhcc
Q psy8611 94 LNILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFN 172 (280)
Q Consensus 94 ~~~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~ 172 (280)
...+..||..++. -|..||+ .+.+.+..+ .+.. -++.+.
T Consensus 85 ~~~l~~~L~~F~k~dl~~vke------------------------~kk~FdK~s---------~~~~-----~aL~K~-- 124 (200)
T cd07638 85 QRSIKAQLQTFVKEDLRKFKD------------------------AKKQFDKVS---------EEKE-----NALVKN-- 124 (200)
T ss_pred HHHHHHHHHHHHHHHhHHHHH------------------------HHHHHHHHh---------HHHH-----HHHHHh--
Confidence 5566666665432 3344444 222221111 0000 000000
Q ss_pred CCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 173 CCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMG 252 (280)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~ 252 (280)
-+-...+...+.++...+...++.|...+=..-.-|...+..|.-+|-..|..|+.+|+.
T Consensus 125 --------------------~~~~k~k~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~t 184 (200)
T cd07638 125 --------------------AQVQRNKQHEVEEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLT 184 (200)
T ss_pred --------------------ccCCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011122334778888888999999988888889999999999999999999999999
Q ss_pred HHhhhhhhHHHHHHHHHHHH
Q psy8611 253 YQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 253 ~~k~~~~~~~~~~We~~~~~ 272 (280)
|+++ ..+....+-|.
T Consensus 185 ff~q-----G~el~~d~~py 199 (200)
T cd07638 185 FFHQ-----GYDLFSELGPY 199 (200)
T ss_pred HHHh-----HHHHHHHhccc
Confidence 9999 88887777663
No 54
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=98.50 E-value=6e-05 Score=67.65 Aligned_cols=191 Identities=14% Similarity=0.098 Sum_probs=130.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHhhh-----HHHHHHHHHHHHHHHhc-cccc
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALA-----------------LARRD-----LSVYSAHLAKSLALVSN-TEEH 65 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~-----------------k~r~d-----l~~~~~e~~~s~~~Ls~-~E~~ 65 (280)
+-|+.|.+.-..+|.-..-+..|.+...... +.|.. +.....-+|.++..-+. +.++
T Consensus 4 ~ld~~f~~le~~~d~t~~~~~~l~~~t~~~LqpNP~~r~~~~~~~~~~k~~g~~k~~~~p~~~~~Lg~~M~~~G~~lg~d 83 (223)
T cd07615 4 KLDDDFQEMERKIDVTNKVVAELLSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLRYGRELGEE 83 (223)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcccccCCCCCchhHHHHHHHHHHhhCCCC
Confidence 4577888877777766666666555544333 22222 33334577777777665 3445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8611 66 ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELA 145 (280)
Q Consensus 66 ~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~ 145 (280)
.+++.+|..+|++..+++.....+...-...|.+||..+ .-..+|.+-+.| +.|..+|-..+-..
T Consensus 84 S~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~--l~~dik~i~k~R-----------KkLe~rRLd~D~~K-- 148 (223)
T cd07615 84 STFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLL--QDKDLKEIGHHL-----------KKLEGRRLDFDYKK-- 148 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----------HHHHHHHHHHHHHH--
Confidence 579999999999999999998876666666788888862 235666655555 22333222221000
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 146 GRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIK 225 (280)
Q Consensus 146 ~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik 225 (280)
.+.+| ..+..++.+..+|+...+.+.
T Consensus 149 ~r~~k------------------------------------------------------~~~eE~~~A~~kfees~E~a~ 174 (223)
T cd07615 149 KRQGK------------------------------------------------------IPDEEIRQAVEKFEESKELAE 174 (223)
T ss_pred HcCCC------------------------------------------------------CcHHHHHHHHHHHHHHHHHHH
Confidence 00010 123345667889999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 226 REYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 226 ~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
..|..| .+.-.|.-..|..|++.|+.||++ +.+..+.+.|.++
T Consensus 175 ~~M~n~-le~e~e~~~~L~~lv~AQl~Yh~~-----a~eiL~~l~~~l~ 217 (223)
T cd07615 175 RSMFNF-LENDVEQVSQLSVLIEAALDYHRQ-----STEILEDLQSKLQ 217 (223)
T ss_pred HHHHHH-HHcChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 999888 555678888999999999999999 9999999999997
No 55
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=98.43 E-value=8.5e-05 Score=66.79 Aligned_cols=191 Identities=14% Similarity=0.115 Sum_probs=129.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHh---hh--HHHHHHHHHHHHHHHhc-cccc
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALA-----------------LAR---RD--LSVYSAHLAKSLALVSN-TEEH 65 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~-----------------k~r---~d--l~~~~~e~~~s~~~Ls~-~E~~ 65 (280)
+-|+.|.+.-..+|.--..+..|.+...... |.| +. +....+.+|.++..-|. +.++
T Consensus 4 ~ld~df~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~ 83 (223)
T cd07592 4 KLDDEFLEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGED 83 (223)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCC
Confidence 4577788877777777666666666655444 111 11 11223567777776665 3344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8611 66 ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELA 145 (280)
Q Consensus 66 ~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~ 145 (280)
.+++.+|..+|++..+|+.....+...-...|.+||+. -.-..+|.+-+.|-+ |..+|-..+-...
T Consensus 84 S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~--~l~~dik~i~k~RKk-----------Le~rRLdyD~~k~- 149 (223)
T cd07592 84 SNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQ--LQDKDLKEINHHRKK-----------LEGRRLDYDYKKR- 149 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH-
Confidence 57999999999999999999887666666678888886 234666676666522 2222222110000
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 146 GRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIK 225 (280)
Q Consensus 146 ~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik 225 (280)
+..| ..+..+..++.+|+...+.+.
T Consensus 150 -k~~k------------------------------------------------------~~eeEl~~Ae~kfe~s~E~a~ 174 (223)
T cd07592 150 -KQGK------------------------------------------------------GPDEELKQAEEKFEESKELAE 174 (223)
T ss_pred -hccc------------------------------------------------------CchHHHHHHHHHHHHHHHHHH
Confidence 0000 012334567889999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 226 REYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 226 ~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
..|..|-. .-.++-..|..|++.|+.||++ +.+..+.+.|.++
T Consensus 175 ~~M~~il~-~e~e~~~~L~~lveAQl~Yh~~-----~~e~L~~l~~~L~ 217 (223)
T cd07592 175 NSMFNLLE-NDVEQVSQLSALVEAQLDYHRQ-----SAEILEELQSKLQ 217 (223)
T ss_pred HHHHHHHh-CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 99988843 4578999999999999999999 9999999999986
No 56
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=98.38 E-value=0.00011 Score=66.32 Aligned_cols=198 Identities=12% Similarity=0.127 Sum_probs=128.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhH-------------HHHHHHHHHHHHHHhc-cccchhHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALAL----ARRDL-------------SVYSAHLAKSLALVSN-TEEHASVSR 70 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k----~r~dl-------------~~~~~e~~~s~~~Ls~-~E~~~~ls~ 70 (280)
+-|+.|.+.-..+|..-.....|.+..+.... .|.+. .....-+|.++..-|. +.++.+++.
T Consensus 14 e~d~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~~~e~Lg~~M~~~g~~lg~~S~~g~ 93 (229)
T cd07594 14 EYDAHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLSNLEQLGQAMIEAGNDFGPGTAYGS 93 (229)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHhhCCCCCchHH
Confidence 45788888888888777777666666655442 11111 1123467777777765 445567999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Q psy8611 71 VVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDK 150 (280)
Q Consensus 71 ~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk 150 (280)
+|..+|++..+|+.....+-..-...|.+||+.++. ..+|.+-+.|-++ ++..-+++..|. |+.....+++
T Consensus 94 aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~--~dik~i~k~RKkL----e~rRLd~D~~k~---r~~kAk~~~~ 164 (229)
T cd07594 94 ALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLE--GDMKTISKERKLL----ENKRLDLDACKT---RVKKAKSAEA 164 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHH---HHhhcCCccc
Confidence 999999999999999877666666678888888443 3666665555332 111222222222 1211112222
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8611 151 SIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAG 230 (280)
Q Consensus 151 ~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~r 230 (280)
.. .++..+..++.+|+.-.+..+.=|..
T Consensus 165 ~~----------------------------------------------------~~e~elr~Ae~kF~~~~E~a~~~M~~ 192 (229)
T cd07594 165 IE----------------------------------------------------QAEQDLRVAQSEFDRQAEITKLLLEG 192 (229)
T ss_pred hh----------------------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 34555566778888888877765555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 231 FEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 231 F~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
+-. --.+.-..|.+|++.|+.||++ +.+..+.+.+.+
T Consensus 193 i~~-~~~~~~~~L~~lv~AQl~Yh~q-----~~e~L~~l~~~l 229 (229)
T cd07594 193 ISS-THANHLRCLRDFVEAQMTYYAQ-----CYQYMDDLQRQL 229 (229)
T ss_pred HHh-cCchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhC
Confidence 522 2367888899999999999999 999999887653
No 57
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=98.36 E-value=0.00013 Score=65.57 Aligned_cols=191 Identities=12% Similarity=0.087 Sum_probs=127.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHh-----hhHHHHHHHHHHHHHHHhc-cccc
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALA-----------------LAR-----RDLSVYSAHLAKSLALVSN-TEEH 65 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~-----------------k~r-----~dl~~~~~e~~~s~~~Ls~-~E~~ 65 (280)
+-|+.|.+.-..+|....-+..|.+...... +-| ........-+|.++..-|. +.+.
T Consensus 4 ~ld~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~d 83 (223)
T cd07614 4 KLDDDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDE 83 (223)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCC
Confidence 4577888888888877776666665544332 211 1122334567777776665 3344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy8611 66 ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELA 145 (280)
Q Consensus 66 ~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~ 145 (280)
.+++.+|..+|++..+|+.....+-..-...|.+||..++ =..+|.+-+.|- .|..+|-..+-..
T Consensus 84 S~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~l--e~dik~i~k~RK-----------kLe~rRLdyD~~K-- 148 (223)
T cd07614 84 SNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLC--DKDLKEIQHHLK-----------KLEGRRLDFDYKK-- 148 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----------HHHHHHHHHHHHH--
Confidence 5799999999999999999988766666668888888833 156666655552 2222222211000
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 146 GRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIK 225 (280)
Q Consensus 146 ~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik 225 (280)
.+.+|. .+..+..+..+|+...+.+.
T Consensus 149 ~r~~k~------------------------------------------------------~eeelr~a~ekFees~E~a~ 174 (223)
T cd07614 149 KRQGKI------------------------------------------------------PDEELRQAMEKFEESKEVAE 174 (223)
T ss_pred HcCCCC------------------------------------------------------chHHHHHHHHHHHHHHHHHH
Confidence 000110 01122344568999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 226 REYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 226 ~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
..|..| .+.-.++-..|..|++.|+.||++ +.+..+.+.+.++
T Consensus 175 ~~M~~i-l~~e~e~~~~L~~lveAQl~Yh~q-----a~eiL~~l~~~l~ 217 (223)
T cd07614 175 TSMHNL-LETDIEQVSQLSALVDAQLDYHRQ-----AVQILDELAEKLK 217 (223)
T ss_pred HHHHHH-HhCChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 888888 455678999999999999999999 9999999999986
No 58
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=98.35 E-value=0.0007 Score=61.72 Aligned_cols=200 Identities=17% Similarity=0.181 Sum_probs=120.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHH
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEAL---------ALARRDLSVYSAHLAKSLALVSN-TEEHASVSRVVSTLGELYE 80 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l---------~k~r~dl~~~~~e~~~s~~~Ls~-~E~~~~ls~~l~~la~~~~ 80 (280)
|+.|...-..+|..-.-..++++.+... -+.++-+ ...-+|.++..=+. +.+...++.+|...|++..
T Consensus 14 ~~~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~--p~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~ 91 (246)
T cd07618 14 SEDLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKL--PLTALAQNMQEGSAQLGEESLIGKMLDTCGDAEN 91 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 4467666666666555555555544333 1111111 13345555544433 2233468999999999999
Q ss_pred HHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-----CchhHHHH
Q psy8611 81 RTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL-AG-----RSDKSIQA 154 (280)
Q Consensus 81 ~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~-~~-----~~dk~~~~ 154 (280)
++++....+-..-...|.+||..++. ..+|.+.+.|-++ +...-+++.+|....+-.. ++ -..|+..+
T Consensus 92 kla~~~~~~d~~ie~~fl~PL~~~le--~dlk~I~K~RkkL----e~~RLD~D~~K~r~~~a~~~~~~~~~~~~~K~~~l 165 (246)
T cd07618 92 KLAFELSQHEVLLEKDILDPLNQLAE--VEIPNIQKQRKQL----AKLVLDWDSARGRYNQAHKSSGTNFQAMPSKIDML 165 (246)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHH----HhHHhhHHHHHHHHHhccccCccccccccchhhhh
Confidence 99987654443333478888888554 5667776666433 2223333333332211000 00 01233333
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy8611 155 AHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEAS 234 (280)
Q Consensus 155 ~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~e 234 (280)
..|+. +++.+++.+++.|.. ++-.| ..
T Consensus 166 ~ee~e---------------------------------------------~a~~k~E~~kD~~~~-------dm~~~-l~ 192 (246)
T cd07618 166 KEEMD---------------------------------------------EAGNKVEQCKDQLAA-------DMYNF-AS 192 (246)
T ss_pred HHHHH---------------------------------------------HHHHHHHHHHHHHHH-------HHHHH-HH
Confidence 33333 666666666655554 77777 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy8611 235 RVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 235 k~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~ 276 (280)
+-.++-..|..|++.|++||++ ..+..+.+.|+++..
T Consensus 193 ~e~e~~~~l~~lv~aQ~eYHr~-----a~e~Le~~~p~i~~~ 229 (246)
T cd07618 193 KEGEYAKFFVLLLEAQADYHRK-----ALAVIEKVLPEIQAH 229 (246)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 8999999999999999999999 999999999999764
No 59
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=98.32 E-value=0.0018 Score=57.38 Aligned_cols=192 Identities=14% Similarity=0.095 Sum_probs=136.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8611 13 VLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGA 92 (280)
Q Consensus 13 ~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~ 92 (280)
-++.+.+-+......-++|...+..+.++-.++......||.+|..||.-|+++.++.+|..+|+++..+...-..
T Consensus 3 ~l~~qie~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~---- 78 (215)
T cd07659 3 GLVKKLEELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIE---- 78 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHH----
Confidence 3566666666667777788888888888889999999999999999999999999999999999999987765443
Q ss_pred hhhHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--------hhHHHHHHHHH
Q psy8611 93 DLNILAELFRDYVCLI-----AAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRS--------DKSIQAAHEVT 159 (280)
Q Consensus 93 e~~~l~~~l~eY~~~i-----~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~--------dk~~~~~~Ei~ 159 (280)
|..++.-++..+ -+++||.-. ...|..|.-+...-+....-++.+..+ -++...+.|..
T Consensus 79 ----ll~ai~~~~s~l~T~l~KaipDT~lT----ikkY~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyr 150 (215)
T cd07659 79 ----LLKTLKPMLSDLGTYLNKAIPDTKLT----IKKYADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYR 150 (215)
T ss_pred ----HHHHhHHHHHHHHHHHHhhCchHHHH----HHHHHHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHH
Confidence 333333333222 245555433 556777777777766655444332211 00001111110
Q ss_pred HHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8611 160 EVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEF 239 (280)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~df 239 (280)
-.=+--+.++.+|+.+-.-|..-+.-.+..++.|+
T Consensus 151 ---------------------------------------------l~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i 185 (215)
T cd07659 151 ---------------------------------------------LILRCRQEARARFAKLRQDVLEKLELLDQKHVQDI 185 (215)
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 01112266789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHH
Q psy8611 240 KDTMVKYLEELMGYQQQEFKDTMVKYL 266 (280)
Q Consensus 240 k~~l~~~~e~~I~~~k~~~~~~~~~~W 266 (280)
..-|.-|......++.. +.+..
T Consensus 186 ~~QL~~f~~aisay~~~-----~~~~~ 207 (215)
T cd07659 186 VFQLQRFVSALSEYHSD-----CHELL 207 (215)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHh
Confidence 99999999999999988 76654
No 60
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=98.29 E-value=7.7e-05 Score=66.95 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=104.7
Q ss_pred HHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 50 AHLAKSLALVSN-TEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSW 128 (280)
Q Consensus 50 ~e~~~s~~~Ls~-~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a 128 (280)
.-+|.++..=|. +.+..+++.+|..+|++..+++.....+-..-...|.+||..+ .-..+|.+-+.|
T Consensus 67 ~~Lg~~M~~~G~elg~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~--~~~dik~i~k~R---------- 134 (223)
T cd07613 67 ALLAEAMLKFGRELGDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNL--HDKDLREIQHHL---------- 134 (223)
T ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH----------
Confidence 455666655554 3344579999999999999999998877666666888888885 446666665555
Q ss_pred HHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHH
Q psy8611 129 QIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEH 208 (280)
Q Consensus 129 ~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~ 208 (280)
+.|..+|-..+-- ..+.+| ..+.
T Consensus 135 -KkLe~rRLd~D~~--K~r~~k------------------------------------------------------~~ee 157 (223)
T cd07613 135 -KKLEGRRLDFDYK--KKRQGK------------------------------------------------------IPDE 157 (223)
T ss_pred -HHHHHHHHhHHHH--HHhCCC------------------------------------------------------CcHH
Confidence 2233322221100 000010 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 209 KVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 209 ~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
.++.++.+|+...+.+...|..|-.. -.+.-..|.+|++.|+.||++ +.+..+.+.|.++
T Consensus 158 Elr~A~~kFees~E~a~~~M~n~l~~-e~e~~~~L~~fveAQl~Yh~q-----a~eiL~~l~~~l~ 217 (223)
T cd07613 158 ELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSALVQAQLEYHKQ-----ATQILQQVTVKLE 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 45667889999999999999888544 337777999999999999999 9999999999986
No 61
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=98.25 E-value=0.0022 Score=57.13 Aligned_cols=194 Identities=12% Similarity=0.147 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHH
Q psy8611 26 SQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN---TEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFR 102 (280)
Q Consensus 26 ~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~---~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~ 102 (280)
..|..+-+++-.|+..-+..+..-..|+.++..|+. +...+.++.+|..||.+...+..++...-.+-..+...|++
T Consensus 16 ~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~ 95 (215)
T cd07642 16 TVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLD 95 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345677777777777788888888888888888888 34456899999999999999999998877777778888888
Q ss_pred HHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCccc
Q psy8611 103 DYVC-LIAAVK-DTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSIL 180 (280)
Q Consensus 103 eY~~-~i~svK-~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~ 180 (280)
-++. -+--|| ++=..=+++|..|.++..-..+.+-...|-....++ |+ .+
T Consensus 96 s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~--------e~-------------------~~- 147 (215)
T cd07642 96 SLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRT--------EI-------------------SG- 147 (215)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchh--------cc-------------------ch-
Confidence 8887 888887 665556788888888764333322211110000000 00 00
Q ss_pred ccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8611 181 IVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKD 260 (280)
Q Consensus 181 ~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~ 260 (280)
.++....+..+..|....-...--+.-.+..|..|+-..+..|...|..|+++
T Consensus 148 -----------------------~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~q---- 200 (215)
T cd07642 148 -----------------------AEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQD---- 200 (215)
T ss_pred -----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----
Confidence 02223334444555444444333466688889999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy8611 261 TMVKYLEELMGYQQQ 275 (280)
Q Consensus 261 ~~~~~We~~~~~~~~ 275 (280)
..+..+.+-|.++.
T Consensus 201 -G~k~le~l~p~~~~ 214 (215)
T cd07642 201 -GLKAVETLKPSIEK 214 (215)
T ss_pred -HHHHHHHHHHHhhc
Confidence 99999999998763
No 62
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=98.25 E-value=0.0026 Score=56.46 Aligned_cols=191 Identities=11% Similarity=0.096 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy8611 24 LESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT-----EEHASVSRVVSTLGELYERTEGVYAAEAGADLNILA 98 (280)
Q Consensus 24 Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~-----E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~ 98 (280)
+.+-.+.|..+..++.....+|+.++..++..+..-... -+.+.++.+|..|+.+...+...+.....+=...+.
T Consensus 14 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~ 93 (215)
T cd07632 14 LTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMV 93 (215)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446667888888899999999999999988776552 123568899999999999999998877666655555
Q ss_pred HhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy8611 99 ELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSD 177 (280)
Q Consensus 99 ~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~ 177 (280)
.||.-|+. .|..+|++=+.=++.-..|.+|.. |.- ++
T Consensus 94 ~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~----------Kna-------------------------ql------- 131 (215)
T cd07632 94 LPIIQFREKDLTEVSTLKDLFGIASNEHDLSMA----------KYS-------------------------RL------- 131 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHh-------------------------hC-------
Confidence 66555443 455555532222222222211111 000 00
Q ss_pred cccccccccccccCCCCchhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8611 178 SILIVGTQGRTVSGGFRSDICDEQVRVKWE--HKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQ 255 (280)
Q Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e--~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k 255 (280)
++...++ ..+++ ..+...++.|..++=-----|.-.+..|.-+|-..|..|+.+++-||+
T Consensus 132 ------------skkK~~E------~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFh 193 (215)
T cd07632 132 ------------PKKRENE------KVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFK 193 (215)
T ss_pred ------------CcCCchH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00222 235566667777666666677888899999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhh
Q psy8611 256 QEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 256 ~~~~~~~~~~We~~~~~~~~ 275 (280)
+ +.+.+-..|+.|+.-+..
T Consensus 194 Q-GyeL~~~~~~~~~~~~~~ 212 (215)
T cd07632 194 K-GAELFSKKLDSFLSSVSD 212 (215)
T ss_pred H-HHHHHHHHHHHHHHHhhh
Confidence 8 888899999999876543
No 63
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=98.23 E-value=0.0032 Score=55.99 Aligned_cols=200 Identities=13% Similarity=0.139 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy8611 19 LLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT---EEHASVSRVVSTLGELYERTEGVYAAEAGADLN 95 (280)
Q Consensus 19 ~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~---E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~ 95 (280)
+.++.++..|..|.|.+..++..-+..+..-..|..++..|+.. .+++.++.+|.+|+.....+..++...-.+-..
T Consensus 9 e~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~ 88 (215)
T cd07641 9 EALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKNLLQGLSH 88 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888999888874 334679999999999999999998776555555
Q ss_pred HHHHhHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccC
Q psy8611 96 ILAELFRDYVC-LIAAVK-DTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNC 173 (280)
Q Consensus 96 ~l~~~l~eY~~-~i~svK-~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~ 173 (280)
...-||+-++. -+--+| |+=..=+|+|.+|.++..-..+.+-...|--.--+++ +.
T Consensus 89 ~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~e~~r~e--------~~-------------- 146 (215)
T cd07641 89 NVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQHGMIRTE--------IT-------------- 146 (215)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcccchhcc--------cc--------------
Confidence 55556655442 455666 6655667788888887765554433221110000100 00
Q ss_pred CCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 174 CPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGY 253 (280)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~ 253 (280)
++ ++....+..++-|.-..---.--+.-.+..|..|+-..|..|...|..|
T Consensus 147 -----~~------------------------Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tf 197 (215)
T cd07641 147 -----GA------------------------EIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNF 197 (215)
T ss_pred -----ch------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 00 1222222333334333333333456688899999999999999999999
Q ss_pred HhhhhhhHHHHHHHHHHHHHh
Q psy8611 254 QQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 254 ~k~~~~~~~~~~We~~~~~~~ 274 (280)
+++ ..+..+.+-|.++
T Consensus 198 Fqq-----G~~~~~~l~py~k 213 (215)
T cd07641 198 FQD-----GLKTADKLKQYIE 213 (215)
T ss_pred HHH-----HHHHHHHHHHHhh
Confidence 999 9999999988765
No 64
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=98.21 E-value=0.0017 Score=57.73 Aligned_cols=188 Identities=13% Similarity=0.172 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-----cc--ccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVS-----NT--EEHASVSRVVSTLGELYERTEGVYAAEAGA 92 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls-----~~--E~~~~ls~~l~~la~~~~~~~~~~~~~a~~ 92 (280)
-++.+-..++.|.+....+...-+++..+...|+.++..++ +. +..-.++.+|..|+.+...+.......-.+
T Consensus 10 ~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~L~~q 89 (207)
T cd07636 10 ELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTRMIEN 89 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666666666666666667778888888887 22 222246788999999888887776654444
Q ss_pred hhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhc
Q psy8611 93 DLNILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLF 171 (280)
Q Consensus 93 e~~~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~ 171 (280)
-...+..||..++. -|+.+|+.=+.=+|.-..|.+|.. ....+..
T Consensus 90 a~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~al~-------k~~~ls~--------------------------- 135 (207)
T cd07636 90 ASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCAVLE-------KHLNLSS--------------------------- 135 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHH-------HHhcCcc---------------------------
Confidence 33333344444321 334444432222222222221111 0000000
Q ss_pred cCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 172 NCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELM 251 (280)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I 251 (280)
.+.| ..+.+++..+...++-|..++=...--|.-.+..|.-+|...|..|+.++.
T Consensus 136 k~K~-------------------------~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~ 190 (207)
T cd07636 136 KKKE-------------------------SQLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLF 190 (207)
T ss_pred cCCc-------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 123378888888889999988888888999999999999999999999999
Q ss_pred HHHhhhhhhHHHHHHHHHHH
Q psy8611 252 GYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 252 ~~~k~~~~~~~~~~We~~~~ 271 (280)
-||.+ .-+....+.|
T Consensus 191 tffhq-----G~el~~d~~~ 205 (207)
T cd07636 191 TFYHH-----GYELAKDFSD 205 (207)
T ss_pred HHHHh-----HHHHHHhhcc
Confidence 99999 8888887766
No 65
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.15 E-value=0.0039 Score=56.86 Aligned_cols=204 Identities=10% Similarity=0.087 Sum_probs=122.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh----------HHHHHHHHHHHHHHHhccccchhHHHHHHHHH
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALAL----ARRD----------LSVYSAHLAKSLALVSNTEEHASVSRVVSTLG 76 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k----~r~d----------l~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la 76 (280)
|+-|.+.-..+|..-.-..++++....... .|.+ |+..+.+.|.-| -+..+++.+|...|
T Consensus 14 d~~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~el------g~~s~lg~aL~~~g 87 (248)
T cd07619 14 SEDLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVL------GDDSLLGKMLKLCG 87 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhc------CCCchHHHHHHHHH
Confidence 677777777777665555555554433220 1222 444444444333 23357999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Q psy8611 77 ELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAH 156 (280)
Q Consensus 77 ~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~ 156 (280)
++..+++.....+-..-...|.+||..++. ..++.+.+.|-++ +...-+++-+|. |+..+.+
T Consensus 88 ea~~kla~a~~~~d~~i~~~fl~PL~~~le--~dlk~I~k~RK~L----e~~RLD~D~~K~---r~~~a~~--------- 149 (248)
T cd07619 88 ETEDKLAQELILFELQIERDVVEPLYVLAE--VEIPNIQKQRKHL----AKLVLDMDSSRT---RWQQSSK--------- 149 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHH----HhhHhhHHHHHH---HHHhccc---------
Confidence 999999999876655555678888888544 4666666665222 112222222222 1111110
Q ss_pred HHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy8611 157 EVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRV 236 (280)
Q Consensus 157 Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~ 236 (280)
..|+..+. . .|.-+. .++...++++..+|+..-...-.++-.| ..+.
T Consensus 150 ----------------~~~~~~~~----~-----~~~~k~-------e~lr~e~E~ae~~~e~~kd~~~~~m~~~-l~~e 196 (248)
T cd07619 150 ----------------SSGLSSNL----Q-----PTGAKA-------DALREEMEEAANRMEICRDQLSADMYSF-VAKE 196 (248)
T ss_pred ----------------cccccccc----c-----CCCCcc-------HHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHH
Confidence 00000000 0 001111 1445555666677776656666677777 6678
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy8611 237 QEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 237 ~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~ 276 (280)
.|+-+-|.+|++.|++||++ ..+..+.+.|.++.-
T Consensus 197 ~e~~~~l~~Lv~AQleYHr~-----A~eiLe~l~~~i~~~ 231 (248)
T cd07619 197 IDYANYFQTLIEVQAEYHRK-----SLELLQSVLPQIKAH 231 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 88888899999999999999 999999999998653
No 66
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=98.14 E-value=0.0019 Score=57.44 Aligned_cols=180 Identities=17% Similarity=0.195 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-------cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh
Q psy8611 28 LSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-------TEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAEL 100 (280)
Q Consensus 28 Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-------~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~ 100 (280)
|+.|.+-...+...-+++..+...|+.++..++. .++.-.++.+|..|+.....+.+.....-.+=...+..|
T Consensus 18 ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~p 97 (207)
T cd07634 18 IKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAP 97 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555555552 122125889999999999888887766555544455555
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcc
Q psy8611 101 FRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSI 179 (280)
Q Consensus 101 l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~ 179 (280)
|..++ .-|..||+.=..=+|.+..|.+| +.| ...+....++.
T Consensus 98 L~~f~k~dl~~vKe~kK~FDK~se~y~~a---leK----~l~l~~~kk~~------------------------------ 140 (207)
T cd07634 98 LEKFRKEQIGAAKDGKKKFDKESEKYYSI---LEK----HLNLSAKKKES------------------------------ 140 (207)
T ss_pred HHHHHHHHHHHHHHHccchhHHHhHHHHH---HHH----HHhccccCCcc------------------------------
Confidence 55543 24566776555555555555432 111 10111111111
Q ss_pred cccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy8611 180 LIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFK 259 (280)
Q Consensus 180 ~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~ 259 (280)
.+.+++..+...+..|...+=...--|...+..|.-||-..|..|+.+|.-||++
T Consensus 141 ----------------------~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~q--- 195 (207)
T cd07634 141 ----------------------HLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHE--- 195 (207)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 1226666777778888888888888899999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q psy8611 260 DTMVKYLEELMG 271 (280)
Q Consensus 260 ~~~~~~We~~~~ 271 (280)
..+..+.+-|
T Consensus 196 --G~el~~dl~p 205 (207)
T cd07634 196 --GYELAQEFAP 205 (207)
T ss_pred --HHHHHHhhcC
Confidence 8888887766
No 67
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=98.11 E-value=0.006 Score=54.38 Aligned_cols=199 Identities=8% Similarity=0.056 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-----cccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 14 LEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-----TEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 14 F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-----~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
|++-..-+..+- ..|..+..++-...++|+.+...|+.++...-. .-..+.++++|..|+.+...+...+..
T Consensus 7 ~~~~~~~~~~~~---~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~ 83 (215)
T cd07631 7 FEEDAAAISNYF---NQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV 83 (215)
T ss_pred HHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333444444 344666777777777888888888888776541 112345999999999999999999887
Q ss_pred hhhhhhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Q psy8611 89 EAGADLNILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLL 167 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~ 167 (280)
...+-...+..||..++. .|..+|++=+.=++.-. ++.........|....+.+++.
T Consensus 84 L~~q~~~sl~~pL~~F~kedL~~~Ke~KK~FdK~Se-------~~d~Al~K~a~lsk~K~~E~~~--------------- 141 (215)
T cd07631 84 LSTQLADAMMFPITQFKERDLKEILTLKEVFQIASN-------DHDAAINRYSRLSKRRENEKVK--------------- 141 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHhcCCCCCCchHHH---------------
Confidence 666655555555555432 34555553111111111 1111111111111111111110
Q ss_pred hhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy8611 168 KTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYL 247 (280)
Q Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~ 247 (280)
+++...+...++.|..++=.----+...+..|.-+|...|..|+
T Consensus 142 ------------------------------------eea~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m 185 (215)
T cd07631 142 ------------------------------------YEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYM 185 (215)
T ss_pred ------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13444455566777777777777788999999999999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 248 EELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 248 e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
.+|+.||++ +.+.+.+.|+.|...+.
T Consensus 186 ~A~~tFFhq-G~e~L~~dl~~f~~~l~ 211 (215)
T cd07631 186 QAQISFFKM-GSENLNEQLEEFLTNIG 211 (215)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 999999999 55555557777777664
No 68
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.04 E-value=0.0062 Score=53.95 Aligned_cols=188 Identities=14% Similarity=0.143 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchh------HHHHHHHHHHHHHHHHHHHHHhhh
Q psy8611 19 LLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT-EEHAS------VSRVVSTLGELYERTEGVYAAEAG 91 (280)
Q Consensus 19 ~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~-E~~~~------ls~~l~~la~~~~~~~~~~~~~a~ 91 (280)
.-|+.++..|+.|.+-...++..-+.++.+...|+.++..+.-- -..+. ++++|..||.....+.+.+...-.
T Consensus 9 ~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~l~d 88 (207)
T cd07633 9 QELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMMMVQ 88 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888899999999888888889999999999999888762 22223 888999999888887777665444
Q ss_pred hhhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhh
Q psy8611 92 ADLNILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTL 170 (280)
Q Consensus 92 ~e~~~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l 170 (280)
+-...+..||.-|+. -|+.+|+ .+.+.+.. +++...+-.--. ++
T Consensus 89 ~aq~s~~~~L~~F~Kedi~~~Ke------------------------~KK~FdK~--se~~~~aL~k~a---------~~ 133 (207)
T cd07633 89 NASDLLIKPLENFRKEQIGFTKE------------------------RKKKFEKD--SEKFYSLLDRHV---------NL 133 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------------Hhhhhhhh--hhHHHHHHHHHh---------cc
Confidence 433333444433321 2334444 22222211 111111100000 00
Q ss_pred -ccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 171 -FNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 171 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
+.++|.. +.++...+...++-|..++=-=.--|.-.+..|.-||-..|..|+.+
T Consensus 134 s~k~K~~e-------------------------~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a 188 (207)
T cd07633 134 SSKKKESQ-------------------------LQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHS 188 (207)
T ss_pred cccCCchH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222 22777777778888888776666678888999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHH
Q psy8611 250 LMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 250 ~I~~~k~~~~~~~~~~We~~~~ 271 (280)
+.-||.+ ..+....|.|
T Consensus 189 ~~tf~hq-----G~el~~df~~ 205 (207)
T cd07633 189 LFTSNNL-----TVELTQDFLP 205 (207)
T ss_pred HHHHHhh-----HHHHHHHhcc
Confidence 9999999 8888777766
No 69
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=98.02 E-value=0.0023 Score=57.34 Aligned_cols=188 Identities=15% Similarity=0.140 Sum_probs=110.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhH-------------HHHHHHHHHHHHHHhc-cccchhHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALA----LARRDL-------------SVYSAHLAKSLALVSN-TEEHASVSR 70 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~----k~r~dl-------------~~~~~e~~~s~~~Ls~-~E~~~~ls~ 70 (280)
+-|+.|.+.-..+|..-.-...+.+..+... ..|.++ .+....+|.++..-+. +.++.+++.
T Consensus 14 eld~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s~~G~ 93 (220)
T cd07617 14 ELDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPGTPYGK 93 (220)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCchHH
Confidence 4477888888777777666666555443321 012111 1234567777766665 345567999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Q psy8611 71 VVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDK 150 (280)
Q Consensus 71 ~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk 150 (280)
+|..+|++..+|+.....+-..-...|.+||+.++. ..+|.+-+.| +.|..+ ||+....-.+
T Consensus 94 aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~--~dlk~i~k~R-----------KkLe~r-----RLd~D~~K~r 155 (220)
T cd07617 94 TLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLE--GDWKTISKER-----------RLLQNR-----RLDLDACKAR 155 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-----------HHHHHH-----HHHHHHHHHH
Confidence 999999999999999776444444567777777322 2455554444 222222 2222111011
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8611 151 SIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAG 230 (280)
Q Consensus 151 ~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~r 230 (280)
+. +++..+..++.+|+.-.+..+.=|..
T Consensus 156 ~~----------------------------------------------------kae~elr~A~~kf~~~~E~a~~~M~~ 183 (220)
T cd07617 156 LK----------------------------------------------------KAEHELRVAQTEFDRQAEVTRLLLEG 183 (220)
T ss_pred Hh----------------------------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 12223445556666655544443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 231 FEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 231 F~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
+-.. -.+--..|.+|++.|+.||++ +.+..+.+.+.
T Consensus 184 il~~-~~e~l~~L~~lv~AQl~Yh~q-----~~e~L~~l~~~ 219 (220)
T cd07617 184 ISST-HVNHLRCLHEFVEAQATYYAQ-----CYRHMLDLQKQ 219 (220)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhc
Confidence 3211 135567789999999999999 99999888765
No 70
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.00 E-value=0.0017 Score=59.16 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=89.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 65 HASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144 (280)
Q Consensus 65 ~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~ 144 (280)
..+++.+|..+|+++.+|++.-..+-..-...|.+||+.++. ..+|.+-+.|-++- ...=+++-.|....|
T Consensus 102 ~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~--~d~k~i~k~RKkle----~~RLd~D~~K~~~~k--- 172 (242)
T cd07600 102 EDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLN--TSFQKAHKARKKVE----DKRLQLDTARAELKS--- 172 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHh---
Confidence 357999999999999999998765444444567777777332 24555444442221 111222222221111
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMI 224 (280)
Q Consensus 145 ~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~i 224 (280)
...++|.. .+...++.++++|....+..
T Consensus 173 a~~~~k~~----------------------------------------------------~~~~e~E~aEdef~~a~E~a 200 (242)
T cd07600 173 AEPAEKQE----------------------------------------------------AARVEVETAEDEFVSATEEA 200 (242)
T ss_pred cccccccc----------------------------------------------------chHHHHHHHHHHHHHhHHHH
Confidence 00111111 23334456778888888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 225 KREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 225 k~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
..-|..+ .+ -.++-..|..|++.|+.||++ +.+..+.+.|.
T Consensus 201 ~~~M~~i-l~-~~e~i~~L~~fv~AQl~Yh~~-----~~e~L~~l~~~ 241 (242)
T cd07600 201 VELMKEV-LD-NPEPLQLLKELVKAQLAYHKT-----AAELLEELLSV 241 (242)
T ss_pred HHHHHHH-Hh-hhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhc
Confidence 8888777 33 378999999999999999999 99999998875
No 71
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=98.00 E-value=0.0069 Score=53.89 Aligned_cols=63 Identities=13% Similarity=0.247 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 205 ~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
+++..+...++.|...+=.----|.-.+..|.-+|...|..|+.+|+-||++ ..+....+.|.
T Consensus 144 EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhq-----G~el~~d~~~y 206 (207)
T cd07635 144 EADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQ-----GYELAKDFNHY 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHhhccc
Confidence 7777788888889888888888899999999999999999999999999999 88888877663
No 72
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=97.93 E-value=0.01 Score=53.61 Aligned_cols=197 Identities=14% Similarity=0.105 Sum_probs=117.2
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhh-------------HHHHHHHHHHHHHHHhc-cccchhHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALA----LARRD-------------LSVYSAHLAKSLALVSN-TEEHASVSR 70 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~----k~r~d-------------l~~~~~e~~~s~~~Ls~-~E~~~~ls~ 70 (280)
+-|+.|.+.-..+|..-.-...+.+..+... ..|.+ ..+...-+|.++..-|. +.++.+++.
T Consensus 14 e~d~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~S~~G~ 93 (229)
T cd07616 14 ELDAHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELLGQYMIDAGNEFGPGTAYGN 93 (229)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4477787777777766666555555443321 11222 12234566777766665 344567999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh
Q psy8611 71 VVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDK 150 (280)
Q Consensus 71 ~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk 150 (280)
+|..+|++..+|+......-..-...|..||+.++. ..+|.+-+.|-++- +..=+++.+|. |+...-+++
T Consensus 94 aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le--~dik~i~k~RKkLe----~rRLdyD~~K~---r~~kAk~~~- 163 (229)
T cd07616 94 ALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIE--GDYKTITKERKLLQ----NKRLDLDAAKT---RLKKAKVAE- 163 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHH---HHhcCCcch-
Confidence 999999999999999875333323367888887553 35555555542221 11111111111 111000111
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8611 151 SIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAG 230 (280)
Q Consensus 151 ~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~r 230 (280)
..+ ..+..+..++.+|+.-.+....=+..
T Consensus 164 ---------------------------~~~------------------------~~e~elr~ae~efees~E~a~~~m~~ 192 (229)
T cd07616 164 ---------------------------ARA------------------------AAEQELRITQSEFDRQAEITRLLLEG 192 (229)
T ss_pred ---------------------------hhc------------------------chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 23444556677777777777664445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q psy8611 231 FEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGY 272 (280)
Q Consensus 231 F~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~ 272 (280)
+. +.-.++-..|.+|++.|+.||++ +.+..+.+...
T Consensus 193 i~-~~~~e~~~~L~~lv~AQl~Yh~~-----~~e~L~~L~~~ 228 (229)
T cd07616 193 IS-STHAHHLRCLNDFVEAQMTYYAQ-----CYQYMLDLQKQ 228 (229)
T ss_pred hh-hcChHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhh
Confidence 43 44567899999999999999999 99998877643
No 73
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=97.70 E-value=0.042 Score=50.73 Aligned_cols=87 Identities=18% Similarity=0.241 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhhHH-------HHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q psy8611 33 SSVEALALARRDLS-------VYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYV 105 (280)
Q Consensus 33 k~~~~l~k~r~dl~-------~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~ 105 (280)
+.+..|.+..+.+. .+....|.++..|+..+ +..|++....+|.....++++... |...++.|.
T Consensus 57 r~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~e-dddl~DIsDklgvLl~e~ge~e~~--------~a~~~d~yR 127 (271)
T PF13805_consen 57 RKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQE-DDDLSDISDKLGVLLYEIGELEDQ--------YADRLDQYR 127 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHH
Confidence 44444444444444 44447788899999777 567999999999988888888876 889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 106 CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKL 142 (280)
Q Consensus 106 ~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL 142 (280)
..+-+||++ +..|...|+.+.++
T Consensus 128 ~~LK~IR~~--------------E~sl~p~R~~r~~l 150 (271)
T PF13805_consen 128 IHLKSIRNR--------------EESLQPSRDRRRKL 150 (271)
T ss_dssp HHHHHHHHH--------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------------HHHHhHHHHHhHHH
Confidence 999998884 55555555555544
No 74
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=97.61 E-value=0.043 Score=48.53 Aligned_cols=190 Identities=13% Similarity=0.150 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy8611 28 LSHLHSSVEALALARRDLSVYSAHLAKSLALVSN---TEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDY 104 (280)
Q Consensus 28 Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~---~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY 104 (280)
|..+-+++-.|+..--.-+..-..+..++..|++ +..++.++.+|-+|+-....++.++...-..-....+-|++-+
T Consensus 18 L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsf 97 (213)
T cd07640 18 LQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSL 97 (213)
T ss_pred HHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHH
Confidence 3444444444444444444444455555555554 2344689999999999999999887765555444455555554
Q ss_pred H-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCccccc
Q psy8611 105 V-CLIAAVK-DTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIV 182 (280)
Q Consensus 105 ~-~~i~svK-~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~ 182 (280)
+ +-+--+| |+=..=+|+|.+|..+..-..+.+-.+.|- .|-. + -|+.
T Consensus 98 lK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~~--~g~~-~-----~e~e----------------------- 146 (213)
T cd07640 98 LKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQKQ--HGLI-R-----LDMT----------------------- 146 (213)
T ss_pred HHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccchh--cccc-c-----ccHH-----------------------
Confidence 3 2556666 666666778888888776666544333211 1100 0 0011
Q ss_pred ccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy8611 183 GTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTM 262 (280)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~ 262 (280)
++....+..++-|.-..---.--+.--+..|.-||-.+|..|...|..|+++ .
T Consensus 147 ----------------------Eaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqq-----G 199 (213)
T cd07640 147 ----------------------DTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQD-----G 199 (213)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHH-----H
Confidence 2222222223333332222222355667888999999999999999999999 9
Q ss_pred HHHHHHHHHHHhh
Q psy8611 263 VKYLEELMGYQQQ 275 (280)
Q Consensus 263 ~~~We~~~~~~~~ 275 (280)
.+..+.+.|.++.
T Consensus 200 ~~~l~~l~pyik~ 212 (213)
T cd07640 200 WKAAQNLGPFIEK 212 (213)
T ss_pred HHHHHHHHhHhhc
Confidence 9999999998753
No 75
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=97.45 E-value=0.088 Score=48.03 Aligned_cols=63 Identities=16% Similarity=0.247 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhc
Q psy8611 210 VERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVS 277 (280)
Q Consensus 210 ~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~~ 277 (280)
.+.++.+|..==..+-..+..|+.+|+.-||..|..|....-..-.. +-..-+.+...+..|+
T Consensus 173 ~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~-----~~~~~e~~~~~~~~id 235 (261)
T cd07648 173 YNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSA-----VGQVHEEFKRQVDELT 235 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HHHHHHHHHHHHHhCC
Confidence 34445666666667778889999999999999999999977655555 6666677776666653
No 76
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=97.28 E-value=0.058 Score=50.37 Aligned_cols=144 Identities=10% Similarity=0.161 Sum_probs=92.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 63 EEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKL 142 (280)
Q Consensus 63 E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL 142 (280)
+...+|+.+|..++.++.+|++.--.|-..-...|..+|...+. ..+..+ .++....+++.-.++-.|...
T Consensus 145 ~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~Ln--~~~~~a----~k~RkkV~~sRL~~D~~R~~~--- 215 (289)
T PF10455_consen 145 EDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTTLN--TDFKKA----NKARKKVENSRLQFDAARANL--- 215 (289)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH----HHHHHHHHHHHHHHHHHHHHh---
Confidence 33357999999999999999998765444444456666655332 222222 222233333333333333322
Q ss_pred HHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 143 ELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISA 222 (280)
Q Consensus 143 ~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~ 222 (280)
.....++|-. .+...++.++++|-..++
T Consensus 216 k~~~~pekee----------------------------------------------------~~r~~lE~aEDeFv~aTe 243 (289)
T PF10455_consen 216 KNKAKPEKEE----------------------------------------------------QLRVELEQAEDEFVSATE 243 (289)
T ss_pred cccCCcccCH----------------------------------------------------HHHHHHHHHHHHHHHHHH
Confidence 1101121111 344556777899999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 223 MIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 223 ~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
....+|..+ ..-.++-..|..|+..|..||+. +.+..+.+++.+.
T Consensus 244 eAv~~Mk~v--l~~~e~l~~Lk~lv~AQl~Yhk~-----aae~L~~~~~~l~ 288 (289)
T PF10455_consen 244 EAVEVMKEV--LDNSEPLRLLKELVKAQLEYHKK-----AAEALSELLKSLD 288 (289)
T ss_pred HHHHHHHHH--hcCcchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcc
Confidence 999888876 33567779999999999999999 9999999998764
No 77
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.25 E-value=0.15 Score=46.64 Aligned_cols=64 Identities=13% Similarity=0.321 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 206 WEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 206 ~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
+...++++..+|+..-...-.+|-.| ..+-.++-+-|..|++.|..||++ .+...+.++|.++.
T Consensus 176 lkeE~eea~~K~E~~kd~~~a~Mynf-l~kE~e~a~~l~~lveaQ~~YHrq-----sl~~Le~~l~~~~~ 239 (257)
T cd07620 176 LKEEEEECWRKLEQCKDQYSADLYHF-ATKEDSYANYFIRLLELQAEYHKN-----SLEFLDKNITELKE 239 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 44556666777777777888888888 778999999999999999999999 99999999999864
No 78
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=97.14 E-value=0.17 Score=45.10 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT----EEHASVSRVVSTLGELYERTEGVYAAEAGADLN 95 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~----E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~ 95 (280)
-+++|-..+.+|.+......+.=+.++.+...|..+|..++.. -.+..|+.+|..+++++..+...+......=..
T Consensus 4 i~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~~~~~~~~ 83 (219)
T PF08397_consen 4 IMEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEEVFKAFHS 83 (219)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667888888888888888888888888999999998852 235679999999999999999777655444333
Q ss_pred ----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 96 ----ILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144 (280)
Q Consensus 96 ----~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~ 144 (280)
+|...++.+..++.....- ....|......|.|......|+..
T Consensus 84 ~li~pLe~~~e~d~k~i~~~~K~------y~ke~k~~~~~l~K~~se~~Kl~K 130 (219)
T PF08397_consen 84 ELIQPLEKKLEEDKKYITQLEKD------YEKEYKRKRDELKKAESELKKLRK 130 (219)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555443321 234555566666665555545543
No 79
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.86 E-value=0.36 Score=44.18 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhc
Q psy8611 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVS 277 (280)
Q Consensus 205 ~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~~ 277 (280)
....+.+..+..|+.--..+-..+..++.+|+.-||+.|..|+...-...-. +...-+.+...+++|+
T Consensus 168 ~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~-----~~~~~e~~~~~l~~id 235 (261)
T cd07674 168 GSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHVQ-----IGQVHEEFKQNVENVG 235 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch-----HHHHHHHHHHHHHhCC
Confidence 3344445556667766667778899999999999999999998654333334 5556666666666553
No 80
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.68 E-value=0.46 Score=42.98 Aligned_cols=167 Identities=14% Similarity=0.159 Sum_probs=91.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHH-HHH
Q psy8611 37 ALALARRDLSVYSAHLAKSLALVSNT-----EEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCL-IAA 110 (280)
Q Consensus 37 ~l~k~r~dl~~~~~e~~~s~~~Ls~~-----E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~-i~s 110 (280)
.+.+.|..+.. +++..+..||.. +.+ .+..++..+-...+.++..|...+..-...+..+|..|..- -..
T Consensus 26 ~fl~ERa~IEe---~Yak~L~klak~~~~~~e~G-tl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k~ 101 (233)
T cd07649 26 EFIRERIKIEE---EYAKNLSKLSQSSLAAQEEG-TLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKKD 101 (233)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHhhhcCCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555553 455666666552 333 47888888888888888888877766555666777776653 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHcCC--------chhHHHHHHHHHHHHHHHHHhh
Q psy8611 111 VKDTFHARGKIYQTWQSWQIILNKKREAKVK-------------LELAGR--------SDKSIQAAHEVTEVRIKYLLKT 169 (280)
Q Consensus 111 vK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~k-------------L~~~~~--------~dk~~~~~~Ei~~~~~~~~~~~ 169 (280)
.|.+=+.=.++...|......+.+.+..... +..++. .+|+..+..++.
T Consensus 102 ~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~---------- 171 (233)
T cd07649 102 MKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLM---------- 171 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHH----------
Confidence 3333222223333333332222333222110 000000 011111222221
Q ss_pred hccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 170 LFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
....+.+.++.+|+.=-..+-..+..++.+|+.-||++|..|...
T Consensus 172 -----------------------------------~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~ 216 (233)
T cd07649 172 -----------------------------------RCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYTQL 216 (233)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233334455566766666777788889999999999999999876
Q ss_pred HHH
Q psy8611 250 LMG 252 (280)
Q Consensus 250 ~I~ 252 (280)
..+
T Consensus 217 ~~~ 219 (233)
T cd07649 217 RHE 219 (233)
T ss_pred HHh
Confidence 654
No 81
>KOG0521|consensus
Probab=96.66 E-value=0.4 Score=50.64 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy8611 17 KGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE-HASVSRVVSTLGELYERTEGVYAAEAGADLN 95 (280)
Q Consensus 17 ~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~-~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~ 95 (280)
....+..++..|..+.+...++....+++..+..+|+..+..+..+-. ...++..|..|..+...+...+.....+-..
T Consensus 26 ~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~ 105 (785)
T KOG0521|consen 26 FEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLGQDEEVISETLQKFSKVLRELGTYHTELRSQLAH 105 (785)
T ss_pred HHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777778888888888899999999999999999855431 2346789999999999998888877777666
Q ss_pred HHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCC
Q psy8611 96 ILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCC 174 (280)
Q Consensus 96 ~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~ 174 (280)
.+..++.-++- -+.-|+..=..=.+++..|..+..-+. ++....+++-..
T Consensus 106 ~~~~~l~~f~k~dl~~v~~~kk~f~ka~~~~d~a~~k~~-------~l~k~~~~~~~~---------------------- 156 (785)
T KOG0521|consen 106 TLSLPLSQFVKGDLHEVKELKKLFEKASEEYDLALVKYS-------RLPKKRRSKVKT---------------------- 156 (785)
T ss_pred HHhhhHHHHHHHHHHHhhhhhHHHHHHHhhHHHHHHHhh-------hhhhccccchhH----------------------
Confidence 66666655432 222222220011122333333322222 222111111111
Q ss_pred CCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 175 PSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQ 254 (280)
Q Consensus 175 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~ 254 (280)
+++..+...+..|....--.--=+.--+..|.-+|-..|..|..+|+.|+
T Consensus 157 ------------------------------e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF 206 (785)
T KOG0521|consen 157 ------------------------------EVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFF 206 (785)
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchh
Confidence 33333344444444444333334445566788899999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHhhh
Q psy8611 255 QQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 255 k~~~~~~~~~~We~~~~~~~~~ 276 (280)
++ .-+....+-|-++.|
T Consensus 207 ~~-----g~~l~~~m~p~~~~i 223 (785)
T KOG0521|consen 207 KQ-----GEDLLSQMDPYIKKV 223 (785)
T ss_pred cc-----cHhHHhhhhHHHHHH
Confidence 98 655556566666555
No 82
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=96.60 E-value=0.52 Score=42.50 Aligned_cols=200 Identities=15% Similarity=0.107 Sum_probs=129.6
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc----cchhHHHHHHHHHHHHHHHHHHH
Q psy8611 12 PVLEDKGLLLDS-LESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTE----EHASVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 12 ~~F~~~k~~i~~-Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E----~~~~ls~~l~~la~~~~~~~~~~ 86 (280)
..|...-..|-. .-..+++|........+.-+.+.....-|..+|..+|..- .++.|+.+|..+++.+..+..-+
T Consensus 5 ~lt~~~~~~~~~~~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l 84 (223)
T cd07605 5 RLTENIYKNIKEQFNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASL 84 (223)
T ss_pred HHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 334444333333 5567788888888888888888888889999998888752 34678899999999998888777
Q ss_pred HHhhh---hh-hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC---chhHHHHH
Q psy8611 87 AAEAG---AD-LNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELA----GR---SDKSIQAA 155 (280)
Q Consensus 87 ~~~a~---~e-~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~----~~---~dk~~~~~ 155 (280)
..... .+ ..+|...+.+..+++.....- ....|.....+|.|.....-|+... |+ ++++.++.
T Consensus 85 ~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~------y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~~k~~~~l~~~~ 158 (223)
T cd07605 85 EQVAKAFHGELILPLEKKLELDQKVINKFEKD------YKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQEKLDQAL 158 (223)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcccHHHHHHH
Confidence 65543 22 226666666666666655432 2334455555555555554444321 11 12222222
Q ss_pred HHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy8611 156 HEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASR 235 (280)
Q Consensus 156 ~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek 235 (280)
..+...+.+++.+-..-.++.-.=++.|
T Consensus 159 ----------------------------------------------------e~v~~k~~ele~~~~~~lr~al~EERrR 186 (223)
T cd07605 159 ----------------------------------------------------EELNDKQKELEAFVSQGLRDALLEERRR 186 (223)
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344666666666666777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 236 VQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 236 ~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
-.-|-..+.-+++..+.++.+ .......-+|..+
T Consensus 187 yc~lv~~~c~v~~~e~~~~~~-----~~~~L~~~l~~w~ 220 (223)
T cd07605 187 YCFLVDKHCSVAKHEIAYHAK-----AMTLLSTRLPLWQ 220 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHhh
Confidence 888999999999999998887 6777766666554
No 83
>KOG3725|consensus
Probab=96.52 E-value=0.34 Score=44.56 Aligned_cols=154 Identities=15% Similarity=0.222 Sum_probs=93.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy8611 63 EEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKI---YQTWQSWQIILNKKREAK 139 (280)
Q Consensus 63 E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~---~~~~~~a~~~L~Kkr~~~ 139 (280)
-+.++-+.+|-..|++..+++....+.-..-...|..||+.|+. +-.|.+-+.|.-+ ..++..+..-|.|.++..
T Consensus 106 GptTpYG~aLiKvaetekrlG~AeReli~taa~nfLtPlRnFlE--GD~KTI~KERklLqnkRLDLDAcKsRLKKAKaae 183 (375)
T KOG3725|consen 106 GPTTPYGSALIKVAETEKRLGQAERELIGTAATNFLTPLRNFLE--GDMKTIQKERKLLQNKRLDLDACKSRLKKAKAAE 183 (375)
T ss_pred CCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHhh--ccHHHHHHHHHHHhhcccChHHHHHHHHHhhhhh
Confidence 34567889999999999999999988888888889999998653 4455554444211 112223333333333221
Q ss_pred HHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 140 VKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAA 219 (280)
Q Consensus 140 ~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~ 219 (280)
.+-. +. .+.++|+.- ..+|..+..++.+|+.
T Consensus 184 ~q~~---rN--------------------------------------~~~s~~~~i--------e~aEqelRvaQ~EFDr 214 (375)
T KOG3725|consen 184 LQTV---RN--------------------------------------SKTSGGFTI--------EQAEQELRVAQAEFDR 214 (375)
T ss_pred hhcc---cc--------------------------------------ccccCcchH--------hHHHHHHHHHHHHHhH
Confidence 1100 00 001222222 2566666667788887
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 220 ISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 220 is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
-++..+-=++.....-...+| .|.+|++.|+-||.+ +-..--.+-.++
T Consensus 215 QaEiTrLLLEGIsstH~nhLr-CL~dFVeaQmtyYAQ-----cyq~MlDLQkqL 262 (375)
T KOG3725|consen 215 QAEITRLLLEGISSTHNNHLR-CLRDFVEAQMTYYAQ-----CYQLMLDLQKQL 262 (375)
T ss_pred HHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHH-----HHHHHHHHHHHh
Confidence 766666555555555555554 689999999999999 655444433333
No 84
>KOG3651|consensus
Probab=96.41 E-value=0.65 Score=43.66 Aligned_cols=201 Identities=13% Similarity=0.126 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8611 15 EDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADL 94 (280)
Q Consensus 15 ~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~ 94 (280)
.++.+.++.=..--++|....-.+.+...+|...+.+||..|..++.-|+-+.-+.+|+.||+.+..+...-.+.+.
T Consensus 135 vkrleeLE~tae~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~vhEpQq~AsEAF~~Fgd~HR~ieK~g~~~~k--- 211 (429)
T KOG3651|consen 135 VKRLEELEETAEFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAVHEPQQTASEAFSSFGDKHRMIEKKGSESAK--- 211 (429)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHhccchhh---
Confidence 33444444444445777777778888888999999999999999999999888999999999999988765443211
Q ss_pred hHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhh---
Q psy8611 95 NILAELFRDYVCLIA-AVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTL--- 170 (280)
Q Consensus 95 ~~l~~~l~eY~~~i~-svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l--- 170 (280)
++...|.+.--|++ +|+|+ |..+ ..|..+.-+...-.-...-++. .|+. +-.|
T Consensus 212 -~ikpmlsDL~tYlnkaiPDT---rLTi-kkYlDvKfeYLSYCLKvKEMDD-----------EE~~-------f~AlqEP 268 (429)
T KOG3651|consen 212 -PIKPMLSDLQTYLNKAIPDT---RLTI-KKYLDVKFEYLSYCLKVKEMDD-----------EEVE-------FVALQEP 268 (429)
T ss_pred -hhhHHHHHHHHHHhccCCcc---hhhh-HHhhhhhHHHHHHHHhhhhccc-----------hhhc-------eeeecCc
Confidence 12222222222222 33332 1111 1111111111111000000000 0110 0000
Q ss_pred ccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8611 171 FNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL 250 (280)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~ 250 (280)
+..-. +|-. +-+ -.-+=-++++.+|..+-.-+..-|+-.+..-+.|....|..|++.+
T Consensus 269 LYRVe------TGNY--------EYR--------liLRCRQeaRarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tm 326 (429)
T KOG3651|consen 269 LYRVE------TGNY--------EYR--------LILRCRQEARARFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTM 326 (429)
T ss_pred eeEee------cCCe--------eee--------hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 00000 0000 000 0111125567899999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHH
Q psy8611 251 MGYQQQEFKDTMVKYLEE 268 (280)
Q Consensus 251 I~~~k~~~~~~~~~~We~ 268 (280)
.+.|+. +.+.+..
T Consensus 327 ak~~~~-----c~~~L~~ 339 (429)
T KOG3651|consen 327 AKCQQE-----CAEILKE 339 (429)
T ss_pred HHHHHH-----HHHHHhc
Confidence 999999 8887654
No 85
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.20 E-value=1 Score=41.57 Aligned_cols=196 Identities=14% Similarity=0.140 Sum_probs=106.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHH-HH
Q psy8611 34 SVEALALARRDLSVYSAHLAKSLALVSNT-----EEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYV-CL 107 (280)
Q Consensus 34 ~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~-----E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~-~~ 107 (280)
-+....+.|..+.. ++|..+..|+.. +.+ .+..++..+-...+.++..+...+.+-. .+...|..|. ..
T Consensus 30 el~~f~keRa~iEe---~Yak~L~kLak~~~~~~~~G-t~~~~~~~~~~e~e~~a~~H~~la~~L~-~~~~~l~~~~~~~ 104 (269)
T cd07673 30 ELSDFIRERATIEE---AYSRSMTKLAKSASNYSQLG-TFAPVWDVFKTSTEKLANCHLELVRKLQ-ELIKEVQKYGEEQ 104 (269)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhhccCCCcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 34445566655554 455666666652 322 4767777776666777776665444332 2334455544 12
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------cCCc-hhHHHHHHHHHHHHHHHHHhhhccCCCC
Q psy8611 108 IAA---VKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL-------AGRS-DKSIQAAHEVTEVRIKYLLKTLFNCCPS 176 (280)
Q Consensus 108 i~s---vK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~-------~~~~-dk~~~~~~Ei~~~~~~~~~~~l~~~~~~ 176 (280)
... +|+.+..=.++...|+.....+.|.|...+.... .+.+ .++..+...+....-.|
T Consensus 105 ~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y----------- 173 (269)
T cd07673 105 VKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESY----------- 173 (269)
T ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-----------
Confidence 222 2222333344566667777777777665543321 1111 12222222222111111
Q ss_pred CcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 177 DSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQ 256 (280)
Q Consensus 177 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~ 256 (280)
...-...+..+.+|+.-=..+-..+..++.+|+.-||.+|..|+...-...-.
T Consensus 174 ---------------------------~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~ 226 (269)
T cd07673 174 ---------------------------KLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQ 226 (269)
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 01222233445666666666777889999999999999999999944433355
Q ss_pred hhhhHHHHHHHHHHHHHhhhc
Q psy8611 257 EFKDTMVKYLEELMGYQQQVS 277 (280)
Q Consensus 257 ~~~~~~~~~We~~~~~~~~~~ 277 (280)
+-..-+.+...+++++
T Consensus 227 -----~~~~~e~ir~~le~~d 242 (269)
T cd07673 227 -----IGQVHEEFINNMANTT 242 (269)
T ss_pred -----HHHHHHHHHHHHHhCC
Confidence 6667777777766654
No 86
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=95.95 E-value=1.1 Score=39.68 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=112.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEA 90 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a 90 (280)
|.+++.+.+.+...-..=..|.+.++....+=..|+..-.++|..|..+|.-+++.. ...+...|.+.-..++..
T Consensus 1 D~ELdakielfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~a-g~~m~~t~KaL~~sg~qr---- 75 (204)
T cd07661 1 DAELDAKLELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTTA-GKMMAATGKALSFSSQQR---- 75 (204)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhh-ccHHHHHHHHHHHhHHHH----
Confidence 455666666666666666777778877777777888888899999999987765432 233333333332222222
Q ss_pred hhhhhHHHHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Q psy8611 91 GADLNILAELFRDYVCLIAAVK-----DTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKY 165 (280)
Q Consensus 91 ~~e~~~l~~~l~eY~~~i~svK-----~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~ 165 (280)
+..-.||..+..-+..++ |++.. ...|+.|.-+..-.+.-.. ..+.|+
T Consensus 76 ----l~~r~pl~~f~~~v~Tf~~rai~Dtl~T----i~~~E~aR~EY~a~~~~mk------------~~s~el------- 128 (204)
T cd07661 76 ----LALRVPLLRLYQEVETFRERAIADTLQT----IQRMEKCRTEYRAALLWMK------------SVSQEL------- 128 (204)
T ss_pred ----HHHHhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhcccHHHHHHHH------------HHhhhc-------
Confidence 123334444333332222 11111 1112222111111111110 001111
Q ss_pred HHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy8611 166 LLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVK 245 (280)
Q Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~ 245 (280)
.|.+.+ .-.++++++..+...+.+|+..---+..-|+-....|..=|...|.-
T Consensus 129 --------dP~~~~-------------------~l~kfr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~ 181 (204)
T cd07661 129 --------DPDTYK-------------------QLEKFRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVT 181 (204)
T ss_pred --------CCccch-------------------hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122221 23457789999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHH
Q psy8611 246 YLEELMGYQQQEFKDTMVKYLEEL 269 (280)
Q Consensus 246 ~~e~~I~~~k~~~~~~~~~~We~~ 269 (280)
|=...+.|+++ .....+.+
T Consensus 182 yqnal~~y~~k-----t~~~~~~i 200 (204)
T cd07661 182 YQNTLLQFWEK-----TSRTMATI 200 (204)
T ss_pred HHHHHHHHHHH-----HHHHHHHH
Confidence 87777777776 55554443
No 87
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=95.85 E-value=1.3 Score=40.00 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=46.9
Q ss_pred HHHHHHhhhHHHHHH----HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHH
Q psy8611 36 EALALARRDLSVYSA----HLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCL 107 (280)
Q Consensus 36 ~~l~k~r~dl~~~~~----e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~ 107 (280)
..+.+.|..+...|+ .++..+...+..+++ .+..++..+..-.+.++..|...+..-...+..||..|..-
T Consensus 25 ~~f~kERa~IE~~YAK~L~kLa~k~~k~~~~~~G-tl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~ 99 (239)
T cd07658 25 ATVLQERAELELNYAKGLSKLSGKLSKASKSVSG-TLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDE 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466666665433 333333222333443 58899999999999999999887777666777888887663
No 88
>KOG3876|consensus
Probab=95.45 E-value=2.1 Score=39.51 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=128.0
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8611 8 LGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYA 87 (280)
Q Consensus 8 ~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~ 87 (280)
+-.|.+|+.+-+-+..--..--.+.+....++.+=..|+..-..+|.+|..||.-++ .|..-+.--++++.-+..--+
T Consensus 121 rTVD~ElEaQie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~--elq~eft~nseTqr~l~knge 198 (341)
T KOG3876|consen 121 RTVDLELEAQIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSP--ELQEEFTYNSETQRLLGKNGE 198 (341)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHhCcCHHHHHHHhhhHH
Confidence 346888887766665444444444445555555555666777788999999987654 577777776777666554433
Q ss_pred HhhhhhhhHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q psy8611 88 AEAGADLNILAELFRDYVCLIAAVK-DTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYL 166 (280)
Q Consensus 88 ~~a~~e~~~l~~~l~eY~~~i~svK-~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~ 166 (280)
.|...|..|+..+..+= .++..-.-...+|+.|.-+.+--|...+-+..
T Consensus 199 --------tLl~alnfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l---------------------- 248 (341)
T KOG3876|consen 199 --------TLLGALNFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTL---------------------- 248 (341)
T ss_pred --------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcC----------------------
Confidence 26667777655554321 11111112255666666666555554432221
Q ss_pred HhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy8611 167 LKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKY 246 (280)
Q Consensus 167 ~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~ 246 (280)
+|.|-+. .-.++.++...++-+++++.+-.-+.--|.-.+..|+.-|.+-|.-|
T Consensus 249 -------~P~~~~t-------------------~~~le~aq~~~q~hkekYeKlrnDvaiKmkfLeENrIkVmh~QL~ll 302 (341)
T KOG3876|consen 249 -------GPRDALT-------------------KNLLEGAQEKFQAHKEKYEKLRNDVAIKMKFLEENRIKVMHKQLELL 302 (341)
T ss_pred -------Ccccccc-------------------ccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1111110 01123566777788899999988888889999999999999999988
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 247 LEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 247 ~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
=.....||-. ....+|.-+.++
T Consensus 303 hnAiaAYfsG-----Nak~LE~tlkqf 324 (341)
T KOG3876|consen 303 HNAIAAYFSG-----NAKQLEQTLKQF 324 (341)
T ss_pred HHHHHHHhcc-----cHHHHHHHHHHh
Confidence 8888888887 777777766654
No 89
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=95.18 E-value=2.3 Score=38.26 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 67 SVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLI-AAVKDTFHARGKIYQTWQSWQIILNKKREAKVKL 142 (280)
Q Consensus 67 ~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i-~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL 142 (280)
++..++..+-.-.+.++..+...+..=...+..+|..+..-. ...|.+...-.++...|......+.|.+....++
T Consensus 62 s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~kl~~~~~~~~~~l~kskk~Y~~~ 138 (251)
T cd07653 62 SSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHLSEGSKLQQKLESSIKQLEKSKKAYEKA 138 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777666666666666655544444555555544322 2334444455555666666666666655555443
No 90
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=94.78 E-value=3 Score=37.66 Aligned_cols=177 Identities=12% Similarity=0.068 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-----cchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHH
Q psy8611 31 LHSSVEALALARRDLSVYSAHLAKSLALVSNTE-----EHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYV 105 (280)
Q Consensus 31 l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E-----~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~ 105 (280)
+......+.++=+.+.....-|..+|..++..- .+..|+.+|..++..+..+..-+......=...|..||.+
T Consensus 27 ~v~ka~K~~saL~a~~~A~~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~f~~~L~~~lI~pLe~-- 104 (231)
T cd07643 27 FVSKATKLHSQLRATIVATSAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQFTSALMDCLVNPLQE-- 104 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence 333444444444445555556777776666531 1357899999999999888777766444443333333333
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCccccccc
Q psy8611 106 CLIAAVKDTFHARGKI-YQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGT 184 (280)
Q Consensus 106 ~~i~svK~~l~~R~~~-~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~ 184 (280)
-+..-|-.+.+=++- -..|..+..+|.|+-..--||....+-
T Consensus 105 -k~E~wkk~~~~ldKd~~k~~kk~R~elKk~~~dt~klqkk~rK------------------------------------ 147 (231)
T cd07643 105 -KIEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTIRLQKKARK------------------------------------ 147 (231)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc------------------------------------
Confidence 122222222111111 234566666666555544444322110
Q ss_pred ccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 185 QGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQ 256 (280)
Q Consensus 185 ~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~ 256 (280)
+|++-. .++..+...+..-....++......+-+--=++.|..-|-.+|.-+++.+|...-+
T Consensus 148 ------g~~~~~----~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~Fvs~l~pVl~~e~~ml~E 209 (231)
T cd07643 148 ------GKGDLQ----PQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTFVSFLKPVLDEEISMLGE 209 (231)
T ss_pred ------cCCccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 010000 11112222222223444555555555555557888899999999999999985554
No 91
>KOG1118|consensus
Probab=94.46 E-value=4.5 Score=38.23 Aligned_cols=94 Identities=7% Similarity=0.027 Sum_probs=59.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHh-----hhHHHHHHHHHHHHHHHhcc-ccch
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEAL-----------------ALAR-----RDLSVYSAHLAKSLALVSNT-EEHA 66 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l-----------------~k~r-----~dl~~~~~e~~~s~~~Ls~~-E~~~ 66 (280)
-|+-|.+....+|.-...+..+......- +|-| +.+...-..+|.++...+.- -.+.
T Consensus 24 LdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~k~~~ypq~e~~Lg~~mik~gkeLg~dS 103 (366)
T KOG1118|consen 24 LDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQVKEKGYPQTEGLLGDVMIKHGKELGDDS 103 (366)
T ss_pred CChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccccCCCCccchhHHHHHHHHHHHhcCCCc
Confidence 47788888889998888888777654432 2222 22333334577777776652 2223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHH
Q psy8611 67 SVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRD 103 (280)
Q Consensus 67 ~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~e 103 (280)
+.+.+|...|+.+..++++-......--..|.++|..
T Consensus 104 s~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~ 140 (366)
T KOG1118|consen 104 SFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQN 140 (366)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5777888888888888887665444433456666655
No 92
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.29 E-value=3.8 Score=36.76 Aligned_cols=65 Identities=12% Similarity=0.264 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy8611 207 EHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 207 e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~ 276 (280)
..+++.++.+|+.=...+-.-++.-+.+|+.-+|++|..|....-.+..+ .-+..|.++..+.++
T Consensus 145 ~~~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~-----~~~~~E~~~~~l~~~ 209 (228)
T cd07650 145 VSDLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALR-----TTESAEECMNQLLEF 209 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH-----hhHHHHHHHHHHhCC
Confidence 34456777888888888888888899999999999999999988877777 777788777776665
No 93
>KOG1451|consensus
Probab=94.13 E-value=7.8 Score=39.70 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 200 EQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
+.++.++..+++..++.|=..|=.-..||..-+..+.=+|-..|..|+-+..-|+.- ..+.-..|.|-..+
T Consensus 156 esqlqeAD~Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~-----g~el~qDF~pfk~q 226 (812)
T KOG1451|consen 156 ESQLQEADAQVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHV-----GSELHQDFKPFKDQ 226 (812)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh-----hHHHHhhhhhHHHH
Confidence 445568888899999999999999999999999999999999999999999998887 77777777765544
No 94
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=93.38 E-value=5.6 Score=35.61 Aligned_cols=123 Identities=18% Similarity=0.092 Sum_probs=67.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHH
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT-----EEHASVSRVVSTLGELYERTEG 84 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~-----E~~~~ls~~l~~la~~~~~~~~ 84 (280)
+|.=|+....++ ...+..+. -+..+.+.|..+.. ++|..+..|+.. +. .++..++..+-...+.++.
T Consensus 3 ~d~G~~~l~~r~---~~g~~~~~-el~~f~keRa~iE~---eYak~L~kLakk~~~~~~~-gsl~~a~~~i~~e~e~~a~ 74 (236)
T cd07651 3 NDAGFDVIQTRI---KDSLRTLE-ELRSFYKERASIEE---EYAKRLEKLSRKSLGGSEE-GGLKNSLDTLRLETESMAK 74 (236)
T ss_pred CCchHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHccccCCCCc-chHHHHHHHHHHHHHHHHH
Confidence 444455444444 33333322 23345566766664 456667666652 22 2477888888888888888
Q ss_pred HHHHhhhhhhhHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 85 VYAAEAGADLNILAELFRDYVCLIAA-VKDTFHARGKIYQTWQSWQIILNKKREAKV 140 (280)
Q Consensus 85 ~~~~~a~~e~~~l~~~l~eY~~~i~s-vK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~ 140 (280)
.+...+..=...+.++|..|..-+.. .|.+...=.++...|......|.|.+....
T Consensus 75 ~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~ 131 (236)
T cd07651 75 SHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYE 131 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776666554566666665443332 222222333445556666666666555543
No 95
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=92.14 E-value=9.2 Score=34.91 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 215 EDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 215 ~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
..|+.==..+-..+..|+.+|+.-||.+|..|...
T Consensus 203 ~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 203 PRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777788889999999999999888874
No 96
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=89.88 E-value=14 Score=33.14 Aligned_cols=39 Identities=10% Similarity=0.192 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 211 ERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 211 ~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
+.++.+|+.--..+-..+..++.+|+.-||+.|-.|+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~ 222 (239)
T cd07647 184 EDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNL 222 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444466666666677778999999999999999999874
No 97
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=87.15 E-value=17 Score=30.76 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhcc-----ccc-hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHH
Q psy8611 37 ALALARRDLSVYSAHLAKSLALVSNT-----EEH-ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRD 103 (280)
Q Consensus 37 ~l~k~r~dl~~~~~e~~~s~~~Ls~~-----E~~-~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~e 103 (280)
...+.|..+.. ++|..+..|+.. +.+ ..+..++..+....+.++..+...+..-...+.+++..
T Consensus 21 ~f~keRa~iE~---eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~ 90 (191)
T cd07610 21 EFLKKRAAIEE---EYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEK 90 (191)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555543 455555555542 111 15778888888888888888877665433334444444
No 98
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=85.80 E-value=29 Score=31.92 Aligned_cols=49 Identities=12% Similarity=0.212 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8611 217 FAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELM 270 (280)
Q Consensus 217 ~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~ 270 (280)
|..--..|...+..|+..|+.-|+.++..+++..-...-- +.+..+.+.
T Consensus 200 Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~~-----i~~cl~~~~ 248 (252)
T cd07675 200 FYIVIPQIYKQLQEMDERRTVKLSECYRGFADSERKVIPI-----ISKCLEGMV 248 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHH
Confidence 5555667888999999999999999999999877665555 555555543
No 99
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.52 E-value=56 Score=34.52 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy8611 103 DYVCLIAAVKDTFHARGKIYQTWQS-WQIILNKKREAKVKL 142 (280)
Q Consensus 103 eY~~~i~svK~~l~~R~~~~~~~~~-a~~~L~Kkr~~~~kL 142 (280)
+|+....-++..+..|.+.+..... -...|...++.+..+
T Consensus 551 eYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 551 EYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888889999999887665433 223444444444333
No 100
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=83.64 E-value=34 Score=31.04 Aligned_cols=26 Identities=8% Similarity=0.103 Sum_probs=18.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 223 MIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 223 ~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
.+-.-+..++.+|+.=||++|-.|..
T Consensus 196 ~~~~~~Q~lEeeRi~f~K~~lw~~~n 221 (242)
T cd07671 196 LTCEVFQLQEDDRITILRNALWVHCN 221 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444567788888888888888876
No 101
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.18 E-value=30 Score=30.08 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy8611 20 LLDSLESQLSHLHSSVE-ALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILA 98 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~-~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~ 98 (280)
+...++...+.+...+. .|.+-.+-+.....+++..+..||..-..=++..+-..++...+.++...+..+..- ..|.
T Consensus 5 ~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~-~~l~ 83 (187)
T cd07629 5 EFTDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLAT-EALV 83 (187)
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 34566777777777774 566666667777777777777776543211121221245666666666655422221 1122
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 99 ELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAK 139 (280)
Q Consensus 99 ~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~ 139 (280)
+.+ +..+...+++ +..|..+...+.+.|.++
T Consensus 84 ~~l--~~~f~EpL~E--------~~~y~~s~k~vlk~R~~K 114 (187)
T cd07629 84 GSL--YYNINEPLSE--------SAQFAGVVRELLKYRKLK 114 (187)
T ss_pred HHH--HHHhhhHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 222 2245555555 666666777777776665
No 102
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=76.55 E-value=93 Score=31.72 Aligned_cols=194 Identities=16% Similarity=0.205 Sum_probs=96.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------hhhHHHHHHHHHHHHHHHhccccchh
Q psy8611 6 KQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALA------------------RRDLSVYSAHLAKSLALVSNTEEHAS 67 (280)
Q Consensus 6 k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~------------------r~dl~~~~~e~~~s~~~Ls~~E~~~~ 67 (280)
++.....-.....+.++.+|.++..+...++.|... |+.+...-..||+++..|
T Consensus 95 rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~L-------- 166 (560)
T PF06160_consen 95 RFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKELLAHSFSYGPAIEEL-------- 166 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHH--------
Confidence 344444445556666667777777777766666655 333333333444444333
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 68 VSRVVSTLGELYERTEGVY----AAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLE 143 (280)
Q Consensus 68 ls~~l~~la~~~~~~~~~~----~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~ 143 (280)
-.-|..+..-+....++. -..|..-...+...+...-.++..||..+..=...+ =..|...++-..++.
T Consensus 167 -e~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~------P~ql~eL~~gy~~m~ 239 (560)
T PF06160_consen 167 -EKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEF------PDQLEELKEGYREME 239 (560)
T ss_pred -HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh------HHHHHHHHHHHHHHH
Confidence 223333333333333332 222444444566666666667777777655522111 223444445555555
Q ss_pred HcC-------CchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHH
Q psy8611 144 LAG-------RSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQED 216 (280)
Q Consensus 144 ~~~-------~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~ 216 (280)
..| -...++.+...+.+... .++. -.+.+++...+.+..+
T Consensus 240 ~~gy~l~~~~i~~~i~~i~~~l~~~~~--~L~~-------------------------------l~l~~~~~~~~~i~~~ 286 (560)
T PF06160_consen 240 EEGYYLEHLDIEEEIEQIEEQLEEALA--LLKN-------------------------------LELDEVEEENEEIEER 286 (560)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHHHHH--HHHc-------------------------------CCHHHHHHHHHHHHHH
Confidence 444 11233333333321000 0000 1233667777777888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 217 FAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 217 ~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
.+.+-..+.+|+.-++. +..-...+.+|+..
T Consensus 287 Id~lYd~le~E~~Ak~~--V~~~~~~l~~~l~~ 317 (560)
T PF06160_consen 287 IDQLYDILEKEVEAKKY--VEKNLKELYEYLEH 317 (560)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHH
Confidence 88888888888877654 33334444444443
No 103
>KOG0994|consensus
Probab=76.49 E-value=1.4e+02 Score=33.60 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 14 LEDKGLLLDSLESQLSHLHSSVEAL 38 (280)
Q Consensus 14 F~~~k~~i~~Le~~Lk~l~k~~~~l 38 (280)
|+....+..+++.....|...+..|
T Consensus 1456 ~~~a~as~~q~~~s~~el~~Li~~v 1480 (1758)
T KOG0994|consen 1456 LEQANASRSQMEESNRELRNLIQQV 1480 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666655555555444
No 104
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=76.43 E-value=62 Score=29.59 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q psy8611 215 EDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELM 270 (280)
Q Consensus 215 ~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~ 270 (280)
..|..--..|..-+..|+..|+..|+..|..|++..-..-.. +....+.+.
T Consensus 199 ~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~-----i~~cl~~i~ 249 (253)
T cd07676 199 EHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPI-----IGKCLDGIT 249 (253)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHH
Confidence 455555667788889999999999999999999877666655 666555543
No 105
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=76.13 E-value=65 Score=29.71 Aligned_cols=69 Identities=12% Similarity=0.034 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-----cccc---hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHH
Q psy8611 32 HSSVEALALARRDLSVYSAHLAKSLALVSN-----TEEH---ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRD 103 (280)
Q Consensus 32 ~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-----~E~~---~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~e 103 (280)
.+-+..+.+.|..+.. ++|..+..|+. .+.+ ..|..++..|-.-.++++.+|...+.+-...+.++++.
T Consensus 21 C~el~~f~~eRA~IE~---~YAk~L~~lakk~~~~~e~g~eyGTL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~ 97 (258)
T cd07681 21 CNDLVSCFQERAKIEK---GYAQQLSDWARKWRGIVEKGPQYGTLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRA 97 (258)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566655554 44555555554 2322 15888888888888888888887766655556777765
No 106
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=75.37 E-value=1.3e+02 Score=32.63 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=91.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHHHH
Q psy8611 8 LGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT-EEHASVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 8 ~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~-E~~~~ls~~l~~la~~~~~~~~~~ 86 (280)
.-||.+|.+...|+ .|..++.+|...+.+ ..+.++...+=.||-. |. -+|+.+...+-.+.+.+++.+
T Consensus 448 ~~Pe~~~~~~~~yL--------~Lr~a~~rL~~a~~~--~~l~~v~~~LW~lAl~iEd-G~ls~A~~~Lr~AQ~aL~eAL 516 (851)
T TIGR02302 448 LAPEETIPNAGHYL--------GLYTIRTRLERARTD--DALRDVADNLWSLALGIED-GDLSDAERRLRAAQDALKDAL 516 (851)
T ss_pred hCcccccCCHHHHH--------HHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhhc-CCHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888 234444444433333 2344556666555543 44 469999999999999999999
Q ss_pred HHhhhhhhh-HHHH----hHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHH
Q psy8611 87 AAEAGADLN-ILAE----LFRDYVCLIAAV-KDTFH--ARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEV 158 (280)
Q Consensus 87 ~~~a~~e~~-~l~~----~l~eY~~~i~sv-K~~l~--~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei 158 (280)
.+-+..+.+ .|.+ -+++|++-+.-- ..-=. .+..-...-.....+|++.-++.+.|..+|.++-..++-.++
T Consensus 517 ~~gAsdeEI~~Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~~A~qlL~ql 596 (851)
T TIGR02302 517 ERGASDEEIKQLTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRDQAKQLLSQL 596 (851)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 876665544 4443 334455433210 00000 000000112234567888888888888899988888888887
Q ss_pred HHHHHHHHHhhhccCCCCC
Q psy8611 159 TEVRIKYLLKTLFNCCPSD 177 (280)
Q Consensus 159 ~~~~~~~~~~~l~~~~~~~ 177 (280)
. =++..+....|..
T Consensus 597 q-----~mmenlq~~q~~~ 610 (851)
T TIGR02302 597 Q-----QMMNNLQMGQPGQ 610 (851)
T ss_pred H-----HHHHHHhccCcCC
Confidence 6 4555555455444
No 107
>KOG0933|consensus
Probab=74.37 E-value=1.4e+02 Score=32.80 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=72.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHh
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAE 89 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~ 89 (280)
.-..|..+...++.+|.+|..+.........-+.+|...+.+++.....+...+.+. +-..+..+-+.++.+..-..+
T Consensus 682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~-~~~~~~~~~e~v~e~~~~Ike- 759 (1174)
T KOG0933|consen 682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHK-LLDDLKELLEEVEESEQQIKE- 759 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhh-HHHHHHHHHHHHHHHHHHHHH-
Confidence 345677788899999999999999999999999999999999999999888777554 323333322222222221111
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 90 AGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTW 125 (280)
Q Consensus 90 a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~ 125 (280)
....+-..-+.+..+=..+++..+.|.+-+...
T Consensus 760 ---~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl 792 (1174)
T KOG0933|consen 760 ---KERALKKCEDKISTLEKKMKDAKANRERRLKDL 792 (1174)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHH
Confidence 111244444555555566777777776555443
No 108
>KOG4460|consensus
Probab=73.34 E-value=1.2e+02 Score=31.30 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHhh
Q psy8611 205 KWEHKVERCQEDFAAISAMIKREYAGFEASR------VQEFKDTMVKYLEELMGYQQQ 256 (280)
Q Consensus 205 ~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek------~~dfk~~l~~~~e~~I~~~k~ 256 (280)
.++.|.+++..+-+..-..+++=+.+|+.++ -.|||+-+ .|+..++.+-+.
T Consensus 620 ~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~El-q~~~~~~~~L~~ 676 (741)
T KOG4460|consen 620 RLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKEL-QLIPDQLRHLGN 676 (741)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH-HHhHHHHHHHHH
Confidence 5667777777777777777777778887643 46888888 777777666555
No 109
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=72.82 E-value=1.2e+02 Score=31.05 Aligned_cols=189 Identities=14% Similarity=0.114 Sum_probs=97.9
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-------c--ccchhHHHHHHHHH
Q psy8611 6 KQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-------T--EEHASVSRVVSTLG 76 (280)
Q Consensus 6 k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-------~--E~~~~ls~~l~~la 76 (280)
++...-.-.....+.|+..|.++..+...++.|.....+-...+.++-..+..+-. . ..-+.|-..|..+.
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e 178 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLE 178 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 33333444556666777777777777777777766533333333322222222211 0 00123444444444
Q ss_pred HHHHHHHHHH----HHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------
Q psy8611 77 ELYERTEGVY----AAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAG------ 146 (280)
Q Consensus 77 ~~~~~~~~~~----~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~------ 146 (280)
.-+....++- -..|..-...+...+...-.++.-||.++..=.+.+ =..|...+.-..+|...|
T Consensus 179 ~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~------P~ql~el~~gy~~m~~~gy~~~~~ 252 (569)
T PRK04778 179 EEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTEL------PDQLQELKAGYRELVEEGYHLDHL 252 (569)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4444444442 222444444666777777777777777655532222 134455555555555544
Q ss_pred -CchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 147 -RSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIK 225 (280)
Q Consensus 147 -~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik 225 (280)
-...+..+..++.+.. -.++ .-.+..++..++.+.++.+.+-..+.
T Consensus 253 ~i~~~i~~l~~~i~~~~--~~l~-------------------------------~l~l~~~~~~~~~i~~~Id~Lyd~le 299 (569)
T PRK04778 253 DIEKEIQDLKEQIDENL--ALLE-------------------------------ELDLDEAEEKNEEIQERIDQLYDILE 299 (569)
T ss_pred ChHHHHHHHHHHHHHHH--HHHH-------------------------------hcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234444444443100 0111 11334677788888888888888888
Q ss_pred HHHHhHHH
Q psy8611 226 REYAGFEA 233 (280)
Q Consensus 226 ~Ev~rF~~ 233 (280)
.|+.-.+.
T Consensus 300 kE~~A~~~ 307 (569)
T PRK04778 300 REVKARKY 307 (569)
T ss_pred HHHHHHHH
Confidence 88877654
No 110
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=72.65 E-value=74 Score=28.76 Aligned_cols=74 Identities=12% Similarity=0.006 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 69 SRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVK-DTFHARGKIYQTWQSWQIILNKKREAKVKL 142 (280)
Q Consensus 69 s~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK-~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL 142 (280)
+.+...+=+-.+.++..+...+..=.....++|.-+..-...++ .......++...+.....+|.|.+-..+++
T Consensus 64 ~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~ 138 (237)
T cd07657 64 SKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKL 138 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443334444444444333322234444444443333333 333444555555556666666665555544
No 111
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=72.46 E-value=35 Score=26.92 Aligned_cols=85 Identities=15% Similarity=0.273 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--cCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccc--cccc--cCCC
Q psy8611 120 KIYQTWQSWQIILNKKREAKVKLEL--AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQ--GRTV--SGGF 193 (280)
Q Consensus 120 ~~~~~~~~a~~~L~Kkr~~~~kL~~--~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~--~~g~ 193 (280)
++++.|+.+.++..-.++...-|.. .... .++..++-.| .|++ .+.| ..|.
T Consensus 2 ksL~hWq~w~aEYe~LKEEi~~l~~~~~~~~-------e~l~~i~r~f----------------~g~lv~~kEi~~ilG~ 58 (99)
T PF13758_consen 2 KSLYHWQTWEAEYEGLKEEIEALPEDDDATR-------EDLLRIRRDF----------------GGSLVTEKEIKEILGE 58 (99)
T ss_pred chHHHHHHHHHHHHHHHHHHHhccccCCCCH-------HHHHHHHHhc----------------CcccccHHHHHHHhCC
Confidence 4688999999999999998876643 2122 2232222222 0111 1111 3444
Q ss_pred Cch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 194 RSD--ICDEQVRVKWEHKVERCQEDFAAISAMIKRE 227 (280)
Q Consensus 194 ~~~--~~~~~~~~~~e~~~~~~~~~~e~is~~ik~E 227 (280)
... .++.|.+.-+.+|++-+++....+.+.+..+
T Consensus 59 ~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~a 94 (99)
T PF13758_consen 59 GQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAA 94 (99)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 5668889999999999999999998887654
No 112
>KOG3691|consensus
Probab=71.85 E-value=1.5e+02 Score=32.04 Aligned_cols=105 Identities=12% Similarity=0.148 Sum_probs=56.0
Q ss_pred HHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 56 LALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKK 135 (280)
Q Consensus 56 ~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kk 135 (280)
+-.|..+|...+...++..+-+.++..+..+.+....-...|...+.-|......|-..=.+=..+-.....++.-|.-+
T Consensus 36 i~nL~~Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~ 115 (982)
T KOG3691|consen 36 IRNLVGSEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTR 115 (982)
T ss_pred HHhhccCCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444455445566666666666666666655555555555666666665555555443333333334444445555555
Q ss_pred HHHHHHHHHcC-CchhHHHHHHHHHH
Q psy8611 136 REAKVKLELAG-RSDKSIQAAHEVTE 160 (280)
Q Consensus 136 r~~~~kL~~~~-~~dk~~~~~~Ei~~ 160 (280)
|+.++||-..+ +..|+-..-.||.+
T Consensus 116 rdeLqklw~~~~q~K~Vi~vL~eieE 141 (982)
T KOG3691|consen 116 RDELQKLWAENSQYKKVIEVLKEIEE 141 (982)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55665655443 34555555555553
No 113
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=70.97 E-value=83 Score=28.61 Aligned_cols=116 Identities=11% Similarity=0.076 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh-
Q psy8611 21 LDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT----EEHASVSRVVSTLGELYERTEGVYAAEAGADLN- 95 (280)
Q Consensus 21 i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~----E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~- 95 (280)
++++-..|.++........+.=..+.....-|..+|..+|.. -.++.|+.+|-.+++++.++...+......=..
T Consensus 17 meqfnP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~~lk~Fh~e 96 (232)
T cd07646 17 MEQFNPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNE 96 (232)
T ss_pred HHccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666666777777777663 235679999999999998886655543332222
Q ss_pred ---HHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 96 ---ILAELFRDYVCLIAA-VKDTFHARGKIYQTWQSWQIILNKKR 136 (280)
Q Consensus 96 ---~l~~~l~eY~~~i~s-vK~~l~~R~~~~~~~~~a~~~L~Kkr 136 (280)
+|...+.-=.+++.+ .|---...-.....|+.++.+|.|.|
T Consensus 97 li~pLE~k~E~D~k~i~a~~Kky~~e~k~k~~sleK~qseLKKlR 141 (232)
T cd07646 97 LLTQLEQKVELDSRYLTAALKKYQTEHRSKGESLEKCQAELKKLR 141 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444422233332 22222222223445555555555544
No 114
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=69.50 E-value=91 Score=28.49 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 106 CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144 (280)
Q Consensus 106 ~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~ 144 (280)
.|+.++|+ +..|..+.+++.|+|++++ ++.
T Consensus 133 ~yl~~Lke--------~~~Y~~slk~vlK~RdqkQ-~d~ 162 (240)
T cd07667 133 DFLPVLRE--------YILYSESMKNVLKKRDQVQ-AEY 162 (240)
T ss_pred HHHHHHHH--------HHHHHHHHHHHHHHHHHHH-HHH
Confidence 45556666 8899999999999999984 544
No 115
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=69.50 E-value=93 Score=28.63 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=38.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhc-----cccc---hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHH
Q psy8611 35 VEALALARRDLSVYSAHLAKSLALVSN-----TEEH---ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFR 102 (280)
Q Consensus 35 ~~~l~k~r~dl~~~~~e~~~s~~~Ls~-----~E~~---~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~ 102 (280)
+..+.+.|..+.. ++|..+..|+. .+.+ -.+..++..+-.-.+.++..+...+.+-.....++++
T Consensus 24 l~~f~kERA~IE~---~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r 96 (258)
T cd07680 24 LMNCVQERAKIEK---AYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVK 96 (258)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3345556655554 45556666665 1211 2477777777777777777777655554444556664
No 116
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=69.41 E-value=1.1e+02 Score=29.59 Aligned_cols=29 Identities=7% Similarity=0.147 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy8611 207 EHKVERCQEDFAAISAMIKREYAGFEASR 235 (280)
Q Consensus 207 e~~~~~~~~~~e~is~~ik~Ev~rF~~ek 235 (280)
......++.-.+.++..+|.++-.|-..+
T Consensus 197 ~~~l~~aC~vvd~L~~~~r~~li~wf~~~ 225 (383)
T PF04100_consen 197 SQQLSDACLVVDALGPDVREELIDWFCNK 225 (383)
T ss_pred HhHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 34456778888888989998888775443
No 117
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=68.46 E-value=97 Score=28.44 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=55.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
|.++...-..++.+..-|..+......+....-+|...+..+......|..-. ..|...|..++.+......++++
T Consensus 41 ~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~--~~L~~lL~~~~~~a~~~~~~l~~ 116 (267)
T PF11887_consen 41 NTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQR--QQLDALLLSATGLADTGTDFLAD 116 (267)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666677777777777777777777777777777777777776554 36888888888888877777765
No 118
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.92 E-value=81 Score=27.29 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHH-HHHHHHHHHHHHHHhhhhhhhHHH
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVST-LGELYERTEGVYAAEAGADLNILA 98 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~-la~~~~~~~~~~~~~a~~e~~~l~ 98 (280)
+...+.+.+..|...+..+.+...-+..-..+++..+..+|..-. .|+..=.. ++.....++......+.. ...+.
T Consensus 5 ~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~--~L~~~E~~~L~~~l~~~~~~~~~~s~~-~~~l~ 81 (185)
T cd07628 5 EFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQ--KLGSLESGEITEPFKIFSESLSQFSTS-LRVLN 81 (185)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhCchhhhHHHHHHHHHHHHHHHH-HHHHH
Confidence 456788899999999999999988999888899998888876532 35555555 666666666544443311 11233
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 99 ELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKV 140 (280)
Q Consensus 99 ~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~ 140 (280)
+.+.+ .++.++|+ +..|..+...+.+.|.++.
T Consensus 82 ~~~~~--~f~~~Lkd--------~~~y~~s~k~~lk~R~~kq 113 (185)
T cd07628 82 KYTDE--NYLTSLKD--------LLHYILSLKNLIKLRDQKQ 113 (185)
T ss_pred HHHHH--HHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 44333 67788888 8899999999999999873
No 119
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=67.36 E-value=71 Score=26.41 Aligned_cols=44 Identities=16% Similarity=0.154 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 101 FRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144 (280)
Q Consensus 101 l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~ 144 (280)
-.....+|..|-+++..|.+-..........+.+++...++|..
T Consensus 30 ~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~ 73 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQN 73 (151)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455677778888888887777777777777777777766653
No 120
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.72 E-value=81 Score=26.85 Aligned_cols=107 Identities=13% Similarity=0.138 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHH----HHHHHHHHHHHHHHHhhhhhhh
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVS----TLGELYERTEGVYAAEAGADLN 95 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~----~la~~~~~~~~~~~~~a~~e~~ 95 (280)
++....+.++.|+..+..+.+.-..+.....+++..+..||..-. .|+..-. .++.+...++..+...+..-.
T Consensus 5 ~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~--~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~- 81 (218)
T cd07596 5 EFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALI--KLAKCEEEVGGELGEALSKLGKAAEELSSLSE- 81 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhccccchhhHHHHHHHHHHHHHHHHHHH-
Confidence 456677888888998888888888888887888888777765431 2443332 255555566655543221110
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 96 ILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAK 139 (280)
Q Consensus 96 ~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~ 139 (280)
...-.+...+++.+++ +..|..+..++.+.|..+
T Consensus 82 --~~~~~~~~~~~e~L~~--------y~~~~~s~k~~l~~R~~~ 115 (218)
T cd07596 82 --AQANQELVKLLEPLKE--------YLRYCQAVKETLDDRADA 115 (218)
T ss_pred --HHHHHHHHHHHhHHHH--------HHHHHHHHHHHHHHHHHH
Confidence 1111223344444444 556666666666666654
No 121
>KOG2180|consensus
Probab=61.63 E-value=2.2e+02 Score=30.17 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHH
Q psy8611 206 WEHKVERCQEDFAAISAMIKREYAGFEASRV-QEFKDTMVK 245 (280)
Q Consensus 206 ~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~-~dfk~~l~~ 245 (280)
.-.+...++...+.+.-.+++|+-+|-..+. .+|..+..+
T Consensus 211 ~l~~l~daC~v~d~lepsvreelIkwf~~qqL~ey~~IF~e 251 (793)
T KOG2180|consen 211 LLQKLSDACLVVDALEPSVREELIKWFCSQQLEEYEQIFRE 251 (793)
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677788889899999999988866553 344444443
No 122
>KOG0977|consensus
Probab=57.45 E-value=2.3e+02 Score=29.04 Aligned_cols=43 Identities=14% Similarity=0.302 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy8611 199 DEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKD 241 (280)
Q Consensus 199 ~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~ 241 (280)
|+.--.+|...+.+++.+|+.++..-+.|++-|-..|+..++.
T Consensus 240 r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~ 282 (546)
T KOG0977|consen 240 REYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRT 282 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4445568899999999999999999999999999999999995
No 123
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=57.33 E-value=2e+02 Score=28.19 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhh
Q psy8611 12 PVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAG 91 (280)
Q Consensus 12 ~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~ 91 (280)
+-+.+..+.++.++....+..+. |..+...+...+..+...|..|..... .+...+..+.+....+..... ...
T Consensus 255 ~V~~el~~~~~~~~~~~~~~~k~---l~~~~~~~~~~~~~~~~~~~~l~~~~~--~l~~yl~~~~~~~~~~~~~~~-~i~ 328 (412)
T PF04108_consen 255 DVVKELQERLDEMENNEERTKKL---LQSQRDHIRELYNALSEALEELRKFGE--RLPSYLAAFHDFEERWEEEKE-SIQ 328 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 33444444554554444442222 334444555555555555555554443 355555555555544443332 122
Q ss_pred hhhhHHHHhHHHHHHHHHHHHHHHH
Q psy8611 92 ADLNILAELFRDYVCLIAAVKDTFH 116 (280)
Q Consensus 92 ~e~~~l~~~l~eY~~~i~svK~~l~ 116 (280)
.....+.+....|.++..|-..+|-
T Consensus 329 ~~~~~l~~L~~~Y~~F~~aY~~LL~ 353 (412)
T PF04108_consen 329 AYIDELEQLCEFYEGFLSAYDSLLL 353 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344455556666665555443
No 124
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=57.01 E-value=1.5e+02 Score=26.79 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=32.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHhc------cccchhHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy8611 37 ALALARRDLSVYSAHLAKSLALVSN------TEEHASVSRVVSTLGELYERTEGVYAAEAGA 92 (280)
Q Consensus 37 ~l~k~r~dl~~~~~e~~~s~~~Ls~------~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~ 92 (280)
.+.+.|..+.. ++|..+..|+. .|.+ .|..++..+-.-.+.++..|...+.+
T Consensus 26 ~f~kERA~IE~---~YaK~L~kLskk~~~g~~E~G-Tl~~sw~~~~~E~e~~a~~H~~la~~ 83 (240)
T cd07672 26 DFLKERASIEE---KYGKELLNLSKKKPCGQTEIN-TLKRSLDVFKQQIDNVGQSHIQLAQT 83 (240)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHhcCCCCcccc-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456655554 55666666664 1333 57788888877777888777664433
No 125
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=55.74 E-value=1.5e+02 Score=26.44 Aligned_cols=89 Identities=13% Similarity=0.135 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy8611 70 RVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRS 148 (280)
Q Consensus 70 ~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~ 148 (280)
.+|..+|+....+....-.+.......+.+||+.++. -|..+|++=. .+...+..+...-+....+.....+
T Consensus 63 ~al~~f~~~l~e~~~~ll~~~~~~~~~~~~pL~~f~k~~i~~~Ke~rk-------~Fd~~q~kyD~~L~r~~~~sk~K~p 135 (214)
T cd07609 63 LALKRFGDGLKDFWGGVLSALKGNDSLILDPLRSFVKSDIRPYKELRK-------NFEYYQRKYDSMLARYVAQSKTKEP 135 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCCCCh
Confidence 4788888888888776666565555556677766442 3334444211 1111222222211111111111123
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy8611 149 DKSIQAAHEVTEVRIKY 165 (280)
Q Consensus 149 dk~~~~~~Ei~~~~~~~ 165 (280)
.-+..+...+.++|-.|
T Consensus 136 ~~l~Eda~qL~e~Rk~Y 152 (214)
T cd07609 136 SSLREDAFQLFEARKAY 152 (214)
T ss_pred hhhhhHHHHHHHHHHHH
Confidence 34556677788788777
No 126
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=55.26 E-value=1.7e+02 Score=26.70 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHH
Q psy8611 28 LSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCL 107 (280)
Q Consensus 28 Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~ 107 (280)
+.++......+.....++...+..+......|+... ..+...+.++......+..... .|...++.--..
T Consensus 173 l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~--~~l~~~v~~l~~~~~~l~~~~~--------~l~~~l~~l~~~ 242 (291)
T TIGR00996 173 LDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRS--DQLDRLLDNLATLTAQLADRDD--------ALDDALAALSGA 242 (291)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHhChH--------HHHHHHHHHHHH
Confidence 344444444444445555555555555555554322 2344444444444443332111 255555555555
Q ss_pred HHHHHHHHH
Q psy8611 108 IAAVKDTFH 116 (280)
Q Consensus 108 i~svK~~l~ 116 (280)
+..+..+|.
T Consensus 243 ~~~~~~~l~ 251 (291)
T TIGR00996 243 SAQVRDLLA 251 (291)
T ss_pred HHHHHHHHH
Confidence 566666655
No 127
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=54.99 E-value=1.6e+02 Score=26.54 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 218 AAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 218 e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
...--.|...+..++..|+...+..|.+|++
T Consensus 200 ~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 200 TLLLPGLLNSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566666666666666666666665
No 128
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=53.51 E-value=3.8e+02 Score=30.33 Aligned_cols=174 Identities=7% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHH------HHHHHHHHHHHHHhhhh
Q psy8611 19 LLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTL------GELYERTEGVYAAEAGA 92 (280)
Q Consensus 19 ~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~l------a~~~~~~~~~~~~~a~~ 92 (280)
..+..++..|..+...++.+......+...+..+...+..+-... ..+.+-|..+ .+....+..+....+..
T Consensus 970 ~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~k--r~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~ 1047 (1311)
T TIGR00606 970 DYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQE--RWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhcc
Q psy8611 93 DLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFN 172 (280)
Q Consensus 93 e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~ 172 (280)
+. ..+-.-...+-..+..+..........+.+...+...|...-.......+.....
T Consensus 1048 ~~----------~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e~~yk~a~~ryr------------- 1104 (1311)
T TIGR00606 1048 QV----------LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYR------------- 1104 (1311)
T ss_pred cH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH-------------
Q ss_pred CCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 173 CCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQ---EDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~---~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
++--++.... ..++.....+-.=|-.||..|+.+...++..++..
T Consensus 1105 --------------------------------ka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~w~~ 1152 (1311)
T TIGR00606 1105 --------------------------------EMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKIIRDLWRS 1152 (1311)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 129
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.04 E-value=1.6e+02 Score=25.63 Aligned_cols=106 Identities=14% Similarity=0.140 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh
Q psy8611 21 LDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAEL 100 (280)
Q Consensus 21 i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~ 100 (280)
...+-+.+..|...+..+.+...-+..-..+++..+..+|..-. .++.+=..++.....++......+.. +.+.
T Consensus 16 F~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~--~ls~~E~~L~~~L~~~~~~~~~~~~~----~~~l 89 (200)
T cd07624 16 FDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQ--LWSASETELAPLLEGVSSAVERCTAA----LEVL 89 (200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcchhHHHHHHHHHHHHHHHHHH----HHHH
Confidence 34566777888888888888888888888888888887775432 23333334555555555555432222 2222
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 101 FRD-YVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKV 140 (280)
Q Consensus 101 l~e-Y~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~ 140 (280)
.+. ...++..+|+ +..|..+.+.+.+.|.++.
T Consensus 90 ~~~~~~~f~e~Lke--------y~~y~~svk~~l~~R~~~q 122 (200)
T cd07624 90 LSDHEFVFLPPLRE--------YLLYSDAVKDVLKRRDQFQ 122 (200)
T ss_pred HHHHHHHhhHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 221 1257777888 8889999999999999863
No 130
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=51.11 E-value=1.4e+02 Score=24.62 Aligned_cols=93 Identities=13% Similarity=0.175 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 49 SAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSW 128 (280)
Q Consensus 49 ~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a 128 (280)
...+..++..|-... .++..-+..|-+.+..+...+...-..-...|...+.-|..++.++.+.=.+=..+-.....+
T Consensus 21 ~~pv~~al~~ld~ss--~g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~a 98 (142)
T PF04048_consen 21 FNPVELALSLLDDSS--VGRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEA 98 (142)
T ss_pred CcHHHHHHHhcCCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555443322 246677888888888888888776666666899999999999999988644444445555555
Q ss_pred HHHHHHHHHHHHHHH
Q psy8611 129 QIILNKKREAKVKLE 143 (280)
Q Consensus 129 ~~~L~Kkr~~~~kL~ 143 (280)
...|.-++..+.+|-
T Consensus 99 k~~L~~~~~eL~~L~ 113 (142)
T PF04048_consen 99 KSLLGCRREELKELW 113 (142)
T ss_pred HHHHhcCCHHHHHHH
Confidence 666655555554443
No 131
>PRK04863 mukB cell division protein MukB; Provisional
Probab=50.76 E-value=4.5e+02 Score=30.41 Aligned_cols=172 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHH
Q psy8611 6 KQLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGV 85 (280)
Q Consensus 6 k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~ 85 (280)
++.+.+.-..+...-+..++.+++.|.+.++...+.+.............-.....++. +...+..+..........
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeE---Lee~Lee~eeeLeeleee 377 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEE---LEERLEEQNEVVEEADEQ 377 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCchhHHHHHHHHHHHHH
Q psy8611 86 YAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKV--KLELAGRSDKSIQAAHEVTEVRI 163 (280)
Q Consensus 86 ~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~--kL~~~~~~dk~~~~~~Ei~~~~~ 163 (280)
..+ ...+...+...+.....-+..+...+..-..-+..|+.+...+.+.+..-. .|..+...+.+......+.
T Consensus 378 lee-leeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~akle---- 452 (1486)
T PRK04863 378 QEE-NEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQ---- 452 (1486)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH----
Q ss_pred HHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 164 KYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKR 226 (280)
Q Consensus 164 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~ 226 (280)
+.+..+..++++++.....+..
T Consensus 453 -----------------------------------------e~e~qL~elE~kL~~lea~leq 474 (1486)
T PRK04863 453 -----------------------------------------EATEELLSLEQKLSVAQAAHSQ 474 (1486)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHHHHH
No 132
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=50.41 E-value=4.1e+02 Score=29.81 Aligned_cols=37 Identities=3% Similarity=0.046 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy8611 202 VRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQE 238 (280)
Q Consensus 202 ~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~d 238 (280)
.+..+..++..++.+|+..-..+..+..++...+...
T Consensus 367 ~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~ 403 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQ 403 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335666666666666666666666665554444333
No 133
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=49.82 E-value=3.7e+02 Score=29.07 Aligned_cols=147 Identities=20% Similarity=0.166 Sum_probs=84.9
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHH
Q psy8611 8 LGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-TEEHASVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 8 ~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-~E~~~~ls~~l~~la~~~~~~~~~~ 86 (280)
.-|+.+|.+...|+ .|..++.+|...+.+ ..+.++...+=.||- +|.+ .|+.+...+-.+.+.+++.+
T Consensus 417 ~~Pe~~~~~~~~yL--------~Lr~a~~rL~~~~~~--~~~~~v~~~LW~lAl~iEdG-~ls~A~~~Lr~AQe~L~eAL 485 (820)
T PF13779_consen 417 HRPEDFFPDPGHYL--------GLRSARRRLERARTD--EALREVADLLWDLALRIEDG-DLSDAERRLRAAQEALREAL 485 (820)
T ss_pred hCCcccCCCHHHHH--------HHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHHHH
Confidence 34677777777777 233344444322211 233455555555554 3444 69999999999999999999
Q ss_pred HHhhhhhhh-HHHHhH----HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHcCCchh
Q psy8611 87 AAEAGADLN-ILAELF----RDYVCLIAAVKDTFHARGKIY-----------QTWQSWQIILNKKREAKVKLELAGRSDK 150 (280)
Q Consensus 87 ~~~a~~e~~-~l~~~l----~eY~~~i~svK~~l~~R~~~~-----------~~~~~a~~~L~Kkr~~~~kL~~~~~~dk 150 (280)
.+-+..+.+ .|.+-| ++|++-+. ++..-- ..-.....+|...-++.+++..+|+++-
T Consensus 486 ~~gAs~eEI~rLm~eLR~A~~~ym~~LA-------eq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~ 558 (820)
T PF13779_consen 486 ERGASDEEIARLMQELREAMQDYMQALA-------EQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDE 558 (820)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHH
Confidence 776544433 444333 33433222 111110 1112236677777777778888888887
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCC
Q psy8611 151 SIQAAHEVTEVRIKYLLKTLFNCCPSD 177 (280)
Q Consensus 151 ~~~~~~Ei~~~~~~~~~~~l~~~~~~~ 177 (280)
..++-.++. =++..+.+..|.+
T Consensus 559 A~q~L~qlq-----~mmenmq~~~~q~ 580 (820)
T PF13779_consen 559 ARQLLEQLQ-----QMMENMQNAQPQQ 580 (820)
T ss_pred HHHHHHHHH-----HHHHhccccCCCc
Confidence 777777766 3444555555553
No 134
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=48.71 E-value=2.1e+02 Score=25.87 Aligned_cols=77 Identities=16% Similarity=0.174 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh
Q psy8611 21 LDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAEL 100 (280)
Q Consensus 21 i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~ 100 (280)
+..=|+|.+-+...+..+-++ ||.-++.++ ..++-...+-+-.+.+...+.+.+..|...+...
T Consensus 6 ~~~rd~q~K~i~~~i~~vEkh----------Fg~lC~~~a------~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~ 69 (219)
T PF06730_consen 6 LRSRDSQTKFIQDRITNVEKH----------FGELCQLFA------AYTRKTARLRDKGDELAKQLQDYANTENPNLKLG 69 (219)
T ss_pred hhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHH------HHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhH
Confidence 344566666666666555543 444444443 3445566666667777777778888888888888
Q ss_pred HHHHHHHHHHHHH
Q psy8611 101 FRDYVCLIAAVKD 113 (280)
Q Consensus 101 l~eY~~~i~svK~ 113 (280)
|+.|...+..|.|
T Consensus 70 L~~fae~la~vqD 82 (219)
T PF06730_consen 70 LKNFAECLAKVQD 82 (219)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777777766
No 135
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=48.36 E-value=1.5e+02 Score=24.08 Aligned_cols=76 Identities=21% Similarity=0.271 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh
Q psy8611 21 LDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAEL 100 (280)
Q Consensus 21 i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~ 100 (280)
++.|......++.---.|-+.-++|......|...-..|..+- ..+..+|..+|++..-...+. .|+..+.++
T Consensus 35 ~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~--~~~~~~LKEiGDveNWa~~iE-----~Dl~~i~~~ 107 (121)
T PF06320_consen 35 VDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLV--DSFNDALKEIGDVENWAEMIE-----RDLRVIEET 107 (121)
T ss_pred HHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhccHHHHHHHHH-----HHHHHHHHH
Confidence 3445555555555556666667777777778888877777653 257777777777665544443 345555555
Q ss_pred HHH
Q psy8611 101 FRD 103 (280)
Q Consensus 101 l~e 103 (280)
|+.
T Consensus 108 L~~ 110 (121)
T PF06320_consen 108 LRY 110 (121)
T ss_pred HHH
Confidence 443
No 136
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=47.38 E-value=3.2e+02 Score=27.71 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 200 EQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQ 256 (280)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~ 256 (280)
+|.+..++-..+++...++.--..|-++|.+|-.. ..+||-.+++-++..-.-+.+
T Consensus 557 eq~vqs~~i~ld~~~~~~n~~r~~i~k~V~~v~~~-~~~fk~~IQssledl~~~l~k 612 (622)
T COG5185 557 EQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDI-TSKFKINIQSSLEDLENELGK 612 (622)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHhhHHHHHHHHHH
Confidence 44455555555555556666666777777777554 677888887777766655555
No 137
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=47.20 E-value=87 Score=22.09 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy8611 21 LDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALV 59 (280)
Q Consensus 21 i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~L 59 (280)
++.||..|..+...+..+-+.-.++..++.++-..+..|
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888887777766666666655555554433
No 138
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=46.96 E-value=2.1e+02 Score=25.51 Aligned_cols=69 Identities=14% Similarity=0.173 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHhc-----ccc--chhHHHHHHHHHHHHHHHHHH
Q psy8611 20 LLDSLESQLSHLHSSVEALALA-------RRDLSVYSAHLAKSLALVSN-----TEE--HASVSRVVSTLGELYERTEGV 85 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~-------r~dl~~~~~e~~~s~~~Ls~-----~E~--~~~ls~~l~~la~~~~~~~~~ 85 (280)
.+..+|..|-...+-+.+|+|. -+++..+-..|+.++..++- ... ..-++..|+.|+.++..+...
T Consensus 3 ~~~~~e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~ 82 (207)
T cd07635 3 RIRAHEAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQ 82 (207)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554 44444444455555777762 211 112346666666666666655
Q ss_pred HHH
Q psy8611 86 YAA 88 (280)
Q Consensus 86 ~~~ 88 (280)
...
T Consensus 83 r~~ 85 (207)
T cd07635 83 REI 85 (207)
T ss_pred HHH
Confidence 544
No 139
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=46.62 E-value=1.6e+02 Score=23.91 Aligned_cols=45 Identities=27% Similarity=0.257 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy8611 15 EDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALV 59 (280)
Q Consensus 15 ~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~L 59 (280)
......+..|-...+.+......+...-..++..+.++|..+...
T Consensus 3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 47 (194)
T cd07307 3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDL 47 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 344445555555555555555555555666666666666655544
No 140
>KOG4796|consensus
Probab=44.41 E-value=1.8e+02 Score=29.70 Aligned_cols=50 Identities=12% Similarity=0.219 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q psy8611 215 EDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEEL 269 (280)
Q Consensus 215 ~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~ 269 (280)
.+++.|-..|..|+++|+.....-=.+.=.+||.+-+.+-|. .|-.|+..
T Consensus 547 ~ey~~i~~qI~qEYeki~~dp~y~eeK~RceYLhsKLaHIK~-----lI~efDk~ 596 (604)
T KOG4796|consen 547 PEYKQIEKQILQEYEKIRKDPNYMEEKQRCEYLHSKLAHIKT-----LIGEFDKQ 596 (604)
T ss_pred CcHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHH-----HHHHHHHh
Confidence 455667777778888887554443344456677777777776 67666653
No 141
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=43.74 E-value=2.5e+02 Score=25.43 Aligned_cols=119 Identities=9% Similarity=0.050 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN----TEEHASVSRVVSTLGELYERTEGVYAAEAGADLN 95 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~----~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~ 95 (280)
-++++-..|.+|......--+.=..+..+-.-|..++..++. +-.++.|+.+|-.+++++.++...+......=..
T Consensus 14 i~eqfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~~lK~Fh~ 93 (226)
T cd07645 14 VMEQFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEENFKKFHR 93 (226)
T ss_pred HHHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566555443333333333333333333333333332 2345789999999999998888865543322111
Q ss_pred ----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 96 ----ILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144 (280)
Q Consensus 96 ----~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~ 144 (280)
+|...+.-=++++.+... +....+.+-...|.|.+...-|+..
T Consensus 94 Ell~~LE~k~elD~kyi~a~~K------kyq~E~k~k~dsLeK~~seLKK~RR 140 (226)
T cd07645 94 EIIAELERKTDLDVKYMTATLK------RYQTEHKNKLDSLEKSQADLKKIRR 140 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444432333332222 2334444444555555555555543
No 142
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=43.33 E-value=3.7e+02 Score=27.27 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 202 VRVKWEHKVERCQEDFAAISAMI 224 (280)
Q Consensus 202 ~~~~~e~~~~~~~~~~e~is~~i 224 (280)
.+.+++.+++.+++++...+..+
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~L 369 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVAL 369 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666554443
No 143
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.27 E-value=4e+02 Score=27.41 Aligned_cols=165 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Q psy8611 70 RVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSD 149 (280)
Q Consensus 70 ~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~d 149 (280)
..|..+|...-.|...+..+..-+-...-..||.|.+.-.-+++.+... |+.|.++.++|...+.+. -....+-|
T Consensus 114 ~~L~~l~~~Li~IHGQh~~q~Ll~~~~~r~lLD~f~~~~~~~~~~~~~~---y~~w~~~~~~l~~~~~~~--~e~~~~~d 188 (557)
T COG0497 114 AQLKELGQLLIDIHGQHEHQSLLKPELQRQLLDAFAGLEELAQEAYQEA---YQAWKQARRELEDLQEKE--RERAQRAD 188 (557)
T ss_pred HHHHHHHHhhheeeccchHHHhcChHHHHHHHHHhcCchHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_pred hHHHHHHHHHH---------------------------------------------HHHHHHHhhh--ccCCCCCccccc
Q psy8611 150 KSIQAAHEVTE---------------------------------------------VRIKYLLKTL--FNCCPSDSILIV 182 (280)
Q Consensus 150 k~~~~~~Ei~~---------------------------------------------~~~~~~~~~l--~~~~~~~~~~~~ 182 (280)
.+...-.|+.+ ..++...+.+ ....++.+.
T Consensus 189 ~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~--- 265 (557)
T COG0497 189 LLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLS--- 265 (557)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHH---
Q ss_pred ccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHH---HHHH
Q psy8611 183 GTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEA---------SRVQEFKDTMVKY---LEEL 250 (280)
Q Consensus 183 ~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~---------ek~~dfk~~l~~~---~e~~ 250 (280)
.+...++.+.-..+.++..+..-++.++. +|....+..-..| ++..
T Consensus 266 ----------------------~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l 323 (557)
T COG0497 266 ----------------------ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDL 323 (557)
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q ss_pred HHHHhhhhhhHHHHHHHHH
Q psy8611 251 MGYQQQEFKDTMVKYLEEL 269 (280)
Q Consensus 251 I~~~k~~~~~~~~~~We~~ 269 (280)
++++.+ +.+....+
T Consensus 324 ~~~~~~-----~~~el~~L 337 (557)
T COG0497 324 LEYLDK-----IKEELAQL 337 (557)
T ss_pred HHHHHH-----HHHHHHHh
No 144
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=38.97 E-value=3.2e+02 Score=25.27 Aligned_cols=70 Identities=14% Similarity=0.084 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccc---hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHH
Q psy8611 31 LHSSVEALALARRDLSVYSAHLAKSLALVSNT-----EEH---ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFR 102 (280)
Q Consensus 31 l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~-----E~~---~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~ 102 (280)
+.+=+..+.+.|..+.. .+|..+..||.- +.+ ..|..++..|-.-.++++.+|...+..-.....+.++
T Consensus 20 ~C~dl~~~~~ERA~IE~---~Yak~L~~~akkw~~~ie~gpeyGTl~~aw~~~~~Eae~~s~~H~~l~~~L~~e~~e~ir 96 (258)
T cd07679 20 LCNDLMNCLHERARIEK---VYAQQLTEWAKRWRQLVEKGPQYGTVEKAWCALMSEAEKVSELHLEVKASLMNEDFEKIK 96 (258)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566655554 445555555542 221 2477888888777888888877644443333334443
Q ss_pred H
Q psy8611 103 D 103 (280)
Q Consensus 103 e 103 (280)
.
T Consensus 97 ~ 97 (258)
T cd07679 97 N 97 (258)
T ss_pred H
Confidence 3
No 145
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=38.60 E-value=4.4e+02 Score=27.01 Aligned_cols=47 Identities=26% Similarity=0.268 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch
Q psy8611 18 GLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHA 66 (280)
Q Consensus 18 k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~ 66 (280)
-.|.+...++|..|...+.... ..-+...+.+|-.+|+.|+..-.++
T Consensus 84 ~s~~~t~~~~L~~le~ll~~~~--~~sl~~~L~~ff~s~q~la~~P~~~ 130 (552)
T COG1256 84 SSYLDTRASQLSQLESLLSEPS--ESSLSTLLNDFFNSLQELASNPSDT 130 (552)
T ss_pred hhHHHHHHHHHHHHHHHhCCCc--cccHHHHHHHHHHHHHHHHhCcccH
Confidence 3566777777777777776666 5788899999999999999864443
No 146
>KOG1925|consensus
Probab=38.41 E-value=4.6e+02 Score=26.94 Aligned_cols=57 Identities=18% Similarity=0.354 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 212 RCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 212 ~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
.|+..|+++....+-|+.---+.|..+|-+-.-.-+.-.---|.. +.+.|-+|+-.+
T Consensus 561 rCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI~~LKivhrr-----~~NRfHSFLLy~ 617 (817)
T KOG1925|consen 561 RCKASWESLRSIAKHELAPALRARLTHFLDQCARRIAMLKIVHRR-----VCNRFHSFLLYL 617 (817)
T ss_pred HhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHc
Confidence 346789999888888888887777777765554444433335666 899999987543
No 147
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=38.41 E-value=2.7e+02 Score=24.22 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q psy8611 18 GLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN 61 (280)
Q Consensus 18 k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~ 61 (280)
-.+.....+.+..|+..+..+.+.-..+.....+++.++..+|.
T Consensus 23 D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~ 66 (236)
T PF09325_consen 23 DEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGS 66 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777777776777666677776665554
No 148
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=37.81 E-value=3.2e+02 Score=25.00 Aligned_cols=82 Identities=13% Similarity=0.072 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH
Q psy8611 27 QLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVC 106 (280)
Q Consensus 27 ~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~ 106 (280)
-|..+...+..+..+.-++..++..++.....++...+ .|..++.++..+...+.+--.+ |...|..-.+
T Consensus 36 ~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aap--dL~~~l~~~~~~s~tL~~~~~~--------L~~lL~~~~~ 105 (267)
T PF11887_consen 36 TLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAP--DLLDALDNLTTTSRTLVDQRQQ--------LDALLLSATG 105 (267)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHH
Confidence 33444444455555555555566666666666655442 4666666655555555444433 5555555556
Q ss_pred HHHHHHHHHHHH
Q psy8611 107 LIAAVKDTFHAR 118 (280)
Q Consensus 107 ~i~svK~~l~~R 118 (280)
+.+.+.++|..-
T Consensus 106 ~a~~~~~~l~~n 117 (267)
T PF11887_consen 106 LADTGTDFLADN 117 (267)
T ss_pred HHHHHHHHHHHh
Confidence 666666666554
No 149
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=36.68 E-value=3e+02 Score=24.36 Aligned_cols=51 Identities=20% Similarity=0.317 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8611 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQ 255 (280)
Q Consensus 205 ~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k 255 (280)
+.+.++..+...++.++..|..-+..|+..+..+=+..+..|+...+..+.
T Consensus 75 ~Fe~~~K~l~~~i~~~~~~I~~~ik~~Ee~~k~~k~~~i~~~~~~~~~~~~ 125 (215)
T PF07083_consen 75 EFEAKIKELIAPIDEASDKIDEQIKEFEEKEKEEKREKIKEYFEEMAEEYG 125 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 678888888899999999999999999999999999999999998887666
No 150
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=35.90 E-value=1.7e+02 Score=21.35 Aligned_cols=39 Identities=13% Similarity=0.166 Sum_probs=22.4
Q ss_pred hhhHHHHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHH
Q psy8611 42 RRDLSVYSAHLAKSLALVSNTEEH-ASVSRVVSTLGELYE 80 (280)
Q Consensus 42 r~dl~~~~~e~~~s~~~Ls~~E~~-~~ls~~l~~la~~~~ 80 (280)
|.-+...|.+|=.+-..+..++.+ ..+...|..+.....
T Consensus 43 r~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~ 82 (87)
T PF08700_consen 43 RKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ 82 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677788888777777766542 123344444443333
No 151
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=35.42 E-value=1.6e+02 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.316 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 13 VLEDKGLLLDSLESQLSHLHSSVEALA 39 (280)
Q Consensus 13 ~F~~~k~~i~~Le~~Lk~l~k~~~~l~ 39 (280)
-|.+..+.++.|+.++.+|..+-+.|+
T Consensus 6 ~f~eL~D~~~~L~~n~~~L~~ihesL~ 32 (58)
T PF08653_consen 6 QFAELSDSMETLDKNMEQLNQIHESLS 32 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666665555555
No 152
>KOG4559|consensus
Probab=34.23 E-value=1.5e+02 Score=23.66 Aligned_cols=49 Identities=20% Similarity=0.184 Sum_probs=36.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhccc
Q psy8611 222 AMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVSRI 279 (280)
Q Consensus 222 ~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~~~~ 279 (280)
..+.+||..=-..|-.|||.+-+...-..=+ +--.++++.|.+++|+.|
T Consensus 53 YKLLEeMNkaTaakY~DMk~iAEkla~k~de---------Ln~KfenL~P~lqQIDai 101 (120)
T KOG4559|consen 53 YKLLEEMNKATAAKYKDMKQIAEKLAGKLDE---------LNLKFENLAPMLQQIDAI 101 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHH---------HHHHHHHHHHHHHHHHHH
Confidence 4567788888888899999988877665444 444578888988888654
No 153
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=34.04 E-value=3.6e+02 Score=24.45 Aligned_cols=28 Identities=7% Similarity=0.239 Sum_probs=15.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 221 SAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 221 s~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
--.+..-+..++..|+.-++.++.+|++
T Consensus 200 lP~lLd~lQ~l~E~rv~~ln~i~~e~~~ 227 (234)
T cd07686 200 LPLLLDSLQKMQEEMIKALKGILDEYSQ 227 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555554
No 154
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=33.91 E-value=3.3e+02 Score=23.96 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 211 ERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 211 ~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
..-..+++.+-....++.-.=++.|-.-|-..+.-++...+.++.+ .......-+|..
T Consensus 151 ~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~-----~~~~L~~~~~~w 208 (219)
T PF08397_consen 151 TERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNE-----AVEHLQEKLDDW 208 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHH
Confidence 3334555555555555555555566666666666666666666665 444444444433
No 155
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.40 E-value=4.1e+02 Score=24.94 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy8611 24 LESQLSHLHS 33 (280)
Q Consensus 24 Le~~Lk~l~k 33 (280)
|..|++.+-.
T Consensus 120 m~~q~~~vK~ 129 (325)
T PF08317_consen 120 MDNQFQLVKT 129 (325)
T ss_pred HHHHHHHHHH
Confidence 4444443333
No 156
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.93 E-value=4.6e+02 Score=24.98 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q psy8611 22 DSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN 61 (280)
Q Consensus 22 ~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~ 61 (280)
..|..-|.++.+....+..++.++...+..++..+..+++
T Consensus 176 ~~l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~ 215 (359)
T COG1463 176 PQLNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAA 215 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHh
Confidence 3445555555555556665566555555555555544443
No 157
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=31.40 E-value=3.6e+02 Score=23.66 Aligned_cols=104 Identities=17% Similarity=0.096 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHH
Q psy8611 23 SLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFR 102 (280)
Q Consensus 23 ~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~ 102 (280)
.+.+-+..|...+..+.+.+.-+..-..+++..+..+|..-. .++..=..+|+..+.++...+..+..-.... .
T Consensus 18 ~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~--~ls~~E~~l~~~le~~g~~~d~~~~~~~~~~----~ 91 (201)
T cd07622 18 DLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFS--EWSAIEKEMGDGLQKAGHYMDSYAASIDNGL----E 91 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcchhHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 366666777777777778888888888888888877776532 2444445667777777766665333322211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 103 DYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKV 140 (280)
Q Consensus 103 eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~ 140 (280)
+=-.+...+|+ +..|..+...+.|+|++++
T Consensus 92 ~~~~f~e~LkE--------y~~ya~slk~vlk~r~~~q 121 (201)
T cd07622 92 DEELIADQLKE--------YLFFADSLRAVCKKHELLQ 121 (201)
T ss_pred hhhhhHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 11245666666 8899999999999999874
No 158
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=31.36 E-value=4.6e+02 Score=24.84 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8611 205 KWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQ 255 (280)
Q Consensus 205 ~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k 255 (280)
.+..++..+-+..+.+|..|- +-|=.++---|.+++.+.+..-+
T Consensus 140 ~L~tri~Vaiq~v~siS~~I~-------kLRDeEL~PQL~eLi~Gl~~MWk 183 (312)
T PF04782_consen 140 DLHTRIRVAIQSVDSISKRIE-------KLRDEELYPQLVELIQGLMRMWK 183 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888889998888775 45555555555555555444333
No 159
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=30.27 E-value=5.6e+02 Score=25.48 Aligned_cols=119 Identities=18% Similarity=0.156 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH-hhh---ccCCCCCcccccccccccccCCCCchhhHHHH
Q psy8611 127 SWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLL-KTL---FNCCPSDSILIVGTQGRTVSGGFRSDICDEQV 202 (280)
Q Consensus 127 ~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~-~~l---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 202 (280)
.++.+|++..+..+=|.. +.|-+..+..++..+-.+|.+ .+. +.+.|+....-.. .-.++.+.+....+..+
T Consensus 283 iWE~EL~~VcEEqqfL~l--QedL~~DL~dDL~ka~eTf~lVeq~~~eQ~k~~~~~~~~~~--~l~i~~pg~~~~~kd~V 358 (426)
T smart00806 283 IWEAELDKVCEEQQFLTL--QEDLIADLKEDLEKAEETFDLVEQCCEEQEKGPSKNRNKPV--SLPVPTPGTFNDLKDQV 358 (426)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccccCCCc--cCCCCCCCChhHHHHHH
Confidence 455666666665443432 345566777777777777833 222 3333433221000 01112222555556665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 203 RVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 203 ~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
+.+...-.=.-+.+.++|-..=|.=-..-...|+..|..-|.+|++.
T Consensus 359 L~EV~aL~PdHEsRLeAIErAEklR~kEle~r~~d~Fq~ELg~FVe~ 405 (426)
T smart00806 359 LMEVRALKPDHESRLEAIERAEKLREKELEYRRVDEFEKELGNFVEN 405 (426)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHhcc
Confidence 55542222222233333322211111111234477777778877763
No 160
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=29.70 E-value=51 Score=25.52 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=22.4
Q ss_pred HHHHHhhh------ccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q psy8611 163 IKYLLKTL------FNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFA 218 (280)
Q Consensus 163 ~~~~~~~l------~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e 218 (280)
+.||+..+ ||.||+-.. ++++.++++++++.
T Consensus 49 G~Ysl~~lgy~v~tFnDcpeA~~-------------------------eL~~eI~eAK~dLr 85 (91)
T PF08285_consen 49 GCYSLFTLGYGVATFNDCPEAAK-------------------------ELQKEIKEAKADLR 85 (91)
T ss_pred HHHHHHHHHHhhhccCCCHHHHH-------------------------HHHHHHHHHHHHHH
Confidence 34666665 888888776 78888888876653
No 161
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=29.50 E-value=3.9e+02 Score=23.44 Aligned_cols=64 Identities=14% Similarity=0.224 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q psy8611 198 CDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQ 273 (280)
Q Consensus 198 ~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~ 273 (280)
++..++..++..++.++...+. .+.+++.+ ...+|.-|..|=..-+.-++. .+...++....-.
T Consensus 140 s~~~K~~~~~~ei~~~e~~~~~----a~~~~e~i----s~~~k~El~rF~~~r~~dfk~----~l~~~~e~~ie~~ 203 (216)
T cd07627 140 TQQEKLNSLLSELEEAERRASE----LKKEFEEV----SELIKSELERFERERVEDFRN----SVEIYLESAIESQ 203 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4456777777777665554444 44455555 344555555554444432222 3555555544433
No 162
>PRK14155 heat shock protein GrpE; Provisional
Probab=29.07 E-value=4.2e+02 Score=23.62 Aligned_cols=49 Identities=12% Similarity=0.138 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 201 QVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 201 ~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
.++.+++.+...+..+|+.+-++..+|.......-+..|-..|..-++.
T Consensus 27 ~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~Dn 75 (208)
T PRK14155 27 AEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADN 75 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 3444667777777788888888888888877777666666655544443
No 163
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.02 E-value=8.7e+02 Score=27.30 Aligned_cols=41 Identities=15% Similarity=0.305 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVS 60 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls 60 (280)
.|..|..++..|.+.+..+...|..+..+-..+-..|....
T Consensus 772 ~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~~ 812 (1201)
T PF12128_consen 772 RIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKVD 812 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666666666666665555555555555433
No 164
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=28.97 E-value=87 Score=25.42 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=19.4
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHL 31 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l 31 (280)
+..-|+||..+...|-.+|..|+..
T Consensus 32 ~T~ID~wFL~~i~~Iv~~e~~L~~~ 56 (123)
T PF02787_consen 32 LTKIDPWFLEQIKNIVDMEKELKEY 56 (123)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHCccHHHHHHHHHHHHHHHHHHHh
Confidence 3456999999999999999999883
No 165
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=28.58 E-value=3.1e+02 Score=21.91 Aligned_cols=29 Identities=7% Similarity=0.165 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 96 ILAELFRDYVCLIAAVKDTFHARGKIYQT 124 (280)
Q Consensus 96 ~l~~~l~eY~~~i~svK~~l~~R~~~~~~ 124 (280)
.|....++|...+.+|--.|.+..+.+..
T Consensus 45 ~f~~~~~~f~~~L~~V~~~Lr~qI~~L~e 73 (117)
T PF10280_consen 45 AFESATSEFFSTLSSVEVELRRQIKYLEE 73 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777888777766665444443
No 166
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.38 E-value=4.4e+02 Score=23.72 Aligned_cols=34 Identities=15% Similarity=-0.116 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 104 YVCLIAAVKDTFHARGKIYQTWQSWQIILNKKRE 137 (280)
Q Consensus 104 Y~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~ 137 (280)
+......+-+.+-.+-+.+..+..+.++|.-.++
T Consensus 107 ~~~~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~ 140 (246)
T cd07597 107 SEDEARAEEDGVLEKLKLQLDLLVSLRDLFERHE 140 (246)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556667777777778888888888887666
No 167
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=26.82 E-value=2.1e+02 Score=21.55 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=27.6
Q ss_pred CCcccccccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 1 MKSILKQLGGWPVLEDKGLLLDSLESQLSHLHSS 34 (280)
Q Consensus 1 ~~~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~ 34 (280)
|.++|.+.-+...|.+....+|.+|+.+-....-
T Consensus 4 ~~~iP~viv~~~d~~~i~~rLD~iEeKVEftn~E 37 (77)
T PRK01026 4 DEKIPQVVVDPKDFKEIQKRLDEIEEKVEFTNAE 37 (77)
T ss_pred ccCCCeeecCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888999999999999988665543
No 168
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.44 E-value=1.6e+02 Score=20.89 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 196 DICDEQVRVKWEHKVERCQEDFAAISAMIK 225 (280)
Q Consensus 196 ~~~~~~~~~~~e~~~~~~~~~~e~is~~ik 225 (280)
..+-|++++.+|.+.+.++++....-..++
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999888888776655443
No 169
>PRK14163 heat shock protein GrpE; Provisional
Probab=26.31 E-value=4.8e+02 Score=23.42 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 202 VRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 202 ~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
++.++..+...+..+|+.+-+++.+|.+.....-+..|-..|..-++.
T Consensus 55 e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDn 102 (214)
T PRK14163 55 ALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDD 102 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhH
Confidence 344566666667788888888888888877777777666666655553
No 170
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=26.10 E-value=5e+02 Score=23.52 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH
Q psy8611 43 RDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTE 83 (280)
Q Consensus 43 ~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~ 83 (280)
.++...+..+......|..-. ..+...+.++..+...+.
T Consensus 167 ~~l~~~l~~l~~l~~~l~~~~--~~i~~ll~~l~~l~~~l~ 205 (291)
T TIGR00996 167 PQLRNLLDGLAQLTAALNARD--GDIGALIDNLNRVLDVLA 205 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHH
Confidence 344444444444444443321 245555555544444433
No 171
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=25.92 E-value=3.7e+02 Score=21.94 Aligned_cols=37 Identities=8% Similarity=0.022 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHH
Q psy8611 68 VSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDY 104 (280)
Q Consensus 68 ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY 104 (280)
+...|..-+.-.+.-++.+.+.-......+.+.|..|
T Consensus 97 l~~~L~~~~~e~eeeSe~lae~fl~g~~d~~~Fl~~f 133 (150)
T PF07200_consen 97 LLARLQAAASEAEEESEELAEEFLDGEIDVDDFLKQF 133 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-S-SSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 3333444444444444444332333333344444443
No 172
>KOG1656|consensus
Probab=25.72 E-value=4.9e+02 Score=23.36 Aligned_cols=119 Identities=13% Similarity=0.140 Sum_probs=77.1
Q ss_pred cccccCchhHHHHHHHHH-HHHHHHHH-HHH--------HHHHHHHHhhhHHHHHHHHHHHHHHHhc----cccchhHHH
Q psy8611 5 LKQLGGWPVLEDKGLLLD-SLESQLSH-LHS--------SVEALALARRDLSVYSAHLAKSLALVSN----TEEHASVSR 70 (280)
Q Consensus 5 ~k~~E~D~~F~~~k~~i~-~Le~~Lk~-l~k--------~~~~l~k~r~dl~~~~~e~~~s~~~Ls~----~E~~~~ls~ 70 (280)
.|+.|+-+-++++.+|+. +.++++.. -.+ ++..| ++.+.+..-+..+..+++.+-. +|...--..
T Consensus 24 ~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaL-krKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~E 102 (221)
T KOG1656|consen 24 QKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQAL-KRKKRYEKQLAQIDGTLSTIEFQREALENANTNTE 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHH
Confidence 355666666666666665 33444322 111 12222 2344555555566666555543 343333446
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 71 VVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQT 124 (280)
Q Consensus 71 ~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~ 124 (280)
.|..++.+.......+...--.....+.+-|.+-.-+..-+-+++........+
T Consensus 103 vl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~ 156 (221)
T KOG1656|consen 103 VLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGAD 156 (221)
T ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 788888899999999988777888889999999999999999999988776554
No 173
>PRK14157 heat shock protein GrpE; Provisional
Probab=25.46 E-value=5e+02 Score=23.52 Aligned_cols=49 Identities=10% Similarity=0.249 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 200 EQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
+.++.++..+...+..+|+.+-++..+|.+.+...-+..|-..|..-++
T Consensus 90 e~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLpvlD 138 (227)
T PRK14157 90 KKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLPALD 138 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444477777777788899999999988888877777766666555544
No 174
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=25.20 E-value=3e+02 Score=22.05 Aligned_cols=43 Identities=19% Similarity=0.335 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhc
Q psy8611 221 SAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQVS 277 (280)
Q Consensus 221 s~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~~ 277 (280)
-..++.|++.+..+ + .--+..+.-+.. -++.|++++.++++..
T Consensus 37 e~~lkEEi~eLK~E----l-----qRKe~Ll~Kh~~-----kI~~w~~lL~d~~~~~ 79 (106)
T PF11594_consen 37 EQVLKEEINELKEE----L-----QRKEQLLQKHYE-----KIDYWEKLLSDAQNQH 79 (106)
T ss_pred HHHHHHHHHHHHHH----H-----HHHHHHHHHHHH-----HHHHHHHHHHHHHhhc
Confidence 34455555555422 1 333444456666 7899999998887764
No 175
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=25.09 E-value=4.4e+02 Score=22.57 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHHHHHHHHhccc
Q psy8611 22 DSLESQLSHLHSSVEALALAR-----------------RDLSVYSAHLAKSLALVSNTE 63 (280)
Q Consensus 22 ~~Le~~Lk~l~k~~~~l~k~r-----------------~dl~~~~~e~~~s~~~Ls~~E 63 (280)
..|+.+|..|...+.-+..++ .-|+.++.++...|..|....
T Consensus 2 ~~L~~~l~~L~~~~~~~d~~~~~~~~~~Fd~~LF~~~~~~L~~yl~Ei~~~l~~L~~~~ 60 (173)
T PF07445_consen 2 QQLEQQLQQLAQQAAQLDRQRGEQHQARFDRQLFSCRSQRLSDYLQEIEQTLAQLQQQV 60 (173)
T ss_pred hHHHHHHHHHHHHHHHHhhcccccchhhccHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665555443 345566666666676666654
No 176
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=24.90 E-value=1.4e+02 Score=20.28 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=17.6
Q ss_pred cccccccccCCCCchhhHHHHHHHHHHHHHHHH
Q psy8611 182 VGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQ 214 (280)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~ 214 (280)
|+++.+.|++|.++-..| ..++|..|..++
T Consensus 2 ~~~~~Knv~G~~e~l~vr---v~eLEeEV~~Lr 31 (48)
T PF14077_consen 2 CSTTEKNVLGDQEQLRVR---VSELEEEVRTLR 31 (48)
T ss_pred cchhhccccCCcchheee---HHHHHHHHHHHH
Confidence 456667778887765443 345555555444
No 177
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.60 E-value=8e+02 Score=25.44 Aligned_cols=42 Identities=17% Similarity=0.098 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTE 63 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E 63 (280)
|.+.....|..++..+.... -.-|...+..|-.+|..|+.--
T Consensus 94 ~~~~~~~~l~~le~if~e~~--~~gl~~~l~~ff~al~~ls~~P 135 (627)
T PRK06665 94 YWKTKDKYLSQLEQVYNEPE--DQSLRTRLDDFWDSWQDLSNYP 135 (627)
T ss_pred HHHHHHHHHHHHHHHhCCCC--CCcHHHHHHHHHHHHHHHHhCC
Confidence 33444444444444443222 3567788888888888888643
No 178
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.54 E-value=6.8e+02 Score=24.58 Aligned_cols=43 Identities=21% Similarity=0.257 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEE 64 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~ 64 (280)
|.+.....|..++..+.... -..+...+..|-.+|..|+.--.
T Consensus 87 ~~~~~~~~l~~le~~~~~~~--~~gl~~~l~~ff~a~~~ls~~P~ 129 (431)
T PRK06799 87 YYNYMNSALSRVESMVGTTG--KNSLSSLMDGFFNAFREVAKNPE 129 (431)
T ss_pred HHHHHHHHHHHHHHHhCCCC--cCchHHHHHHHHHHHHHHHhCcC
Confidence 34444445555554443221 24677888899999999987533
No 179
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=24.42 E-value=6.4e+02 Score=24.24 Aligned_cols=26 Identities=42% Similarity=0.544 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDL 45 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl 45 (280)
.++.++..|+.|.+-++.|.++|...
T Consensus 262 ~Ld~i~~rl~~L~~~~~~l~~~~~~~ 287 (388)
T PF04912_consen 262 KLDSIERRLKSLLSELEELAEKRKEA 287 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 57777777777777777777776654
No 180
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=23.58 E-value=2.9e+02 Score=19.94 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 42 RRDLSVYSAHLAKSLALVSN-TEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 42 r~dl~~~~~e~~~s~~~Ls~-~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
..+++..+..++..+..-.. ......+..++..+-...+.++..+..
T Consensus 39 E~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~a~~h~~ 86 (91)
T PF00611_consen 39 EEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEETEQIAEQHSK 86 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555443322 222245777777777777777777765
No 181
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=23.36 E-value=7.4e+02 Score=24.60 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy8611 18 GLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLA 57 (280)
Q Consensus 18 k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~ 57 (280)
.+...+|+.+|+.+.+.+..+..+..+.+.++..+..-+.
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~ 97 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIA 97 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHH
Confidence 3444455555555555555555555555555544444433
No 182
>PRK11637 AmiB activator; Provisional
Probab=23.10 E-value=7e+02 Score=24.21 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 114 TFHARGKIYQTWQSWQIILNKKREAK 139 (280)
Q Consensus 114 ~l~~R~~~~~~~~~a~~~L~Kkr~~~ 139 (280)
+-..|.+++..|......|...+...
T Consensus 164 i~~~d~~~l~~l~~~~~~L~~~k~~l 189 (428)
T PRK11637 164 LNQARQETIAELKQTREELAAQKAEL 189 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777666555543
No 183
>PRK03907 fliE flagellar hook-basal body protein FliE; Reviewed
Probab=22.43 E-value=3.8e+02 Score=20.95 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 68 VSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSW 128 (280)
Q Consensus 68 ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a 128 (280)
|..++..+.+....-.........-+...+.+.+-.--.-=-|++.++.-|.|+..+|+..
T Consensus 32 L~~al~~Vn~~Q~~A~~~~~~~~~G~~~dlhevmIA~~kA~ls~q~~vqVRNKlveAYqEI 92 (97)
T PRK03907 32 LKQSINELNKTQEQSEKALADIATGQVKDLHQAAIAIGKAETSMKLMLEVRNKAISAYKEI 92 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444443333332222222233333333334457788889999999999864
No 184
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=22.26 E-value=8.4e+02 Score=24.83 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHHHHHHH
Q psy8611 14 LEDKGLLLDSLESQLSHLHSSVEALAL----ARRDLSVYSAHLAKSLALVSNT---EEHASVSRVVSTLGELYERTEGVY 86 (280)
Q Consensus 14 F~~~k~~i~~Le~~Lk~l~k~~~~l~k----~r~dl~~~~~e~~~s~~~Ls~~---E~~~~ls~~l~~la~~~~~~~~~~ 86 (280)
|.+.++.+..++..+..|...++.+=. -...+..-+.++......+-.- -++.++..-+..+-+....+...+
T Consensus 189 ~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L 268 (560)
T PF06160_consen 189 YLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALL 268 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666555554432 2556666667777777776652 112235445555444444444444
Q ss_pred HHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Q psy8611 87 AAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYL 166 (280)
Q Consensus 87 ~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~ 166 (280)
.. -+.......+.+--.-|+.+=++|..-..+..........+.. ....+. +....+..|++.+..+|-
T Consensus 269 ~~---l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~---~l~~~~-----~~~~~l~~e~~~v~~sY~ 337 (560)
T PF06160_consen 269 KN---LELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYE---YLEHAK-----EQNKELKEELERVSQSYT 337 (560)
T ss_pred Hc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHhcC
Confidence 33 3333344444444446777777766655444443332222222 221221 222345667776666664
Q ss_pred H
Q psy8611 167 L 167 (280)
Q Consensus 167 ~ 167 (280)
+
T Consensus 338 L 338 (560)
T PF06160_consen 338 L 338 (560)
T ss_pred C
Confidence 4
No 185
>PRK14147 heat shock protein GrpE; Provisional
Probab=21.60 E-value=5.2e+02 Score=22.19 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 200 EQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
++++.+++.+.-.+..+|+.+-+++.+|.+.....-...|-..|..-++
T Consensus 31 ~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLpv~D 79 (172)
T PRK14147 31 RSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLPVFD 79 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3344477777777778888888888888887777666666655555444
No 186
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=21.53 E-value=4.4e+02 Score=21.28 Aligned_cols=40 Identities=13% Similarity=0.187 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc
Q psy8611 23 SLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT 62 (280)
Q Consensus 23 ~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~ 62 (280)
.||.+.+.|......+.++-......+..|..++..||+.
T Consensus 51 ~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDv 90 (121)
T PF06320_consen 51 KIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDV 90 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 3444445555555555555444444455555555555444
No 187
>KOG3850|consensus
Probab=21.52 E-value=7.9e+02 Score=24.27 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------h
Q psy8611 200 EQVRVKWEHKVERCQEDFAAISAMIKREY---------AGFEASRVQEFKDTMVKYLEELMGYQQQEF-----------K 259 (280)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~e~is~~ik~Ev---------~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~-----------~ 259 (280)
-+.|++.....-.+.+.|+..-+.+++|+ +||..+|.+|--+-+.++=...|..-|++. +
T Consensus 266 leeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsy 345 (455)
T KOG3850|consen 266 LEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSY 345 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556677777777777776 578888877766655554444343332110 1
Q ss_pred hHHHHHHHHHHHHHhhhcccC
Q psy8611 260 DTMVKYLEELMGYQQQVSRIE 280 (280)
Q Consensus 260 ~~~~~~We~~~~~~~~~~~~~ 280 (280)
++.-+.||.+-.-...|++||
T Consensus 346 ERaRdIqEalEscqtrisKlE 366 (455)
T KOG3850|consen 346 ERARDIQEALESCQTRISKLE 366 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 336777777666555555554
No 188
>PRK14151 heat shock protein GrpE; Provisional
Probab=21.37 E-value=5.4e+02 Score=22.23 Aligned_cols=48 Identities=6% Similarity=0.135 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 202 VRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 202 ~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
++.++..+.-.+..+|+.+-++..+|.+.....-...|-..|..-++.
T Consensus 35 e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLpv~Dn 82 (176)
T PRK14151 35 QLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLPVVDS 82 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 333677777777788888888888888887777666666655554443
No 189
>PHA02047 phage lambda Rz1-like protein
Probab=21.14 E-value=2e+02 Score=22.62 Aligned_cols=30 Identities=10% Similarity=0.096 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 200 EQVRVKWEHKVERCQEDFAAISAMIKREYA 229 (280)
Q Consensus 200 ~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~ 229 (280)
+.++...++.|..++.+-+.-+..|+.+++
T Consensus 47 ~~r~~~~Q~~V~~l~~kae~~t~Ei~~aL~ 76 (101)
T PHA02047 47 EVRYATLQRHVQAVEARTNTQRQEVDRALD 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544
No 190
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.14 E-value=1.7e+02 Score=23.63 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q psy8611 97 LAELFRDYVCLIAAVKDTFHAR 118 (280)
Q Consensus 97 l~~~l~eY~~~i~svK~~l~~R 118 (280)
+..|+..+..-+.++++.+..+
T Consensus 74 l~~~L~~~~~~v~~~~~~l~~~ 95 (133)
T PF06148_consen 74 LRKPLSQFREEVESVRDELDNT 95 (133)
T ss_dssp HHHHHHHHHHHHHHHHHS-STT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555554
No 191
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=21.07 E-value=3.5e+02 Score=20.04 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=26.0
Q ss_pred cccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 3 SILKQLGGWPVLEDKGLLLDSLESQLSHLHSSV 35 (280)
Q Consensus 3 ~~~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~ 35 (280)
..|++.=+.+.|.+...++|.+|..+.....-+
T Consensus 6 k~P~v~v~~~dfne~~kRLdeieekvef~~~Ev 38 (75)
T COG4064 6 KVPKVVVDPDDFNEIHKRLDEIEEKVEFVNGEV 38 (75)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 467777777889999999999999886665444
No 192
>PRK14141 heat shock protein GrpE; Provisional
Probab=21.06 E-value=6e+02 Score=22.67 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 201 QVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 201 ~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
+++.+++.+...+..+|+.+-++..+|++.....-...|-..|..-++
T Consensus 45 ~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLLpViD 92 (209)
T PRK14141 45 AENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDMLSVSD 92 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHh
Confidence 334466666667778888888888888887777666666655554444
No 193
>PRK14164 heat shock protein GrpE; Provisional
Probab=20.83 E-value=6.2e+02 Score=22.74 Aligned_cols=53 Identities=13% Similarity=0.203 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8611 198 CDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL 250 (280)
Q Consensus 198 ~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~ 250 (280)
..+.++.++..+...+..+|+.+-++..+|.+.....-+..|-..|..-++..
T Consensus 81 ~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLpVlDnL 133 (218)
T PRK14164 81 TVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLPILDDL 133 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 34667777777777888888888888888888877777776666666555543
No 194
>PRK14154 heat shock protein GrpE; Provisional
Probab=20.81 E-value=6.1e+02 Score=22.64 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 201 QVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 201 ~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
.++.++..+...+..+|+.+-+++.+|.......-+..|-..|..-++.
T Consensus 66 ~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDn 114 (208)
T PRK14154 66 RKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADS 114 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 3444555555556677777777777777777666666655555554443
No 195
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=20.56 E-value=4e+02 Score=20.49 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH
Q psy8611 26 SQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGEL 78 (280)
Q Consensus 26 ~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~ 78 (280)
.++..+..-+..+..++..+...+.+.-.+...|..++++. .++..+|.+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~---~vy~~VG~v 55 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDA---EVYKLVGNV 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc---hHHHHhhhH
Confidence 34455556667777778888888888888888888887543 334444553
No 196
>PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus
Probab=20.51 E-value=7.3e+02 Score=23.42 Aligned_cols=89 Identities=19% Similarity=0.243 Sum_probs=55.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 40 LARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARG 119 (280)
Q Consensus 40 k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~ 119 (280)
..+.-+..+...|+++|+.++..-...-++--+.++-+..+++...+.. |.+.|.. +.+=|.-=.+|.
T Consensus 56 ~n~SrF~~~~~q~sKaF~k~aqv~kdav~GP~INSL~~lQq~vn~aY~s----Ev~kL~~--------~~~ERn~~Er~~ 123 (385)
T PF15642_consen 56 ENLSRFSDSKQQFSKAFNKTAQVSKDAVLGPKINSLTELQQKVNGAYGS----EVIKLDR--------GRSERNHEERRK 123 (385)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhhcCcccchHHHHHHHHHhhhhH----HHHHHHH--------hHHHhhHHHHHh
Confidence 3455666677789999999987543333444567777788888887764 2121211 122223334555
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8611 120 KIYQTWQSWQIILNKKREAKV 140 (280)
Q Consensus 120 ~~~~~~~~a~~~L~Kkr~~~~ 140 (280)
++-..|+.-+..|.++++...
T Consensus 124 ~iTt~~qq~ee~Le~k~~~is 144 (385)
T PF15642_consen 124 KITTSHQQHEEALEKKKEDIS 144 (385)
T ss_pred hhhhHHHHHHHHHHHHHHHHH
Confidence 666777778888888887654
No 197
>PRK14142 heat shock protein GrpE; Provisional
Probab=20.48 E-value=5.5e+02 Score=23.22 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 199 DEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 199 ~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
...++.++..+...+..+|+.+-+++.+|.+.....-+..|-..|..-++.
T Consensus 45 ~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLpVlDn 95 (223)
T PRK14142 45 TEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLGVLDD 95 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHhH
Confidence 356777888888889999999999999999999888777777776655553
No 198
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=20.34 E-value=5.1e+02 Score=21.62 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh
Q psy8611 21 LDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAEL 100 (280)
Q Consensus 21 i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~ 100 (280)
.+.++.++..+...+..|. .++..+..++..+..... .+..++..+|+....++.-... ...++..
T Consensus 28 f~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~-----~~~~~~~ 93 (229)
T PF03114_consen 28 FEELEEKFKQLEESIKKLQ-------KSLKKYLDSIKKLSASQK--NMKSPFEELADALIELGSEFSD-----DSSLGNA 93 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH--CHTHHHHHHHHHHHHHHHCTST-----TCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhhhHHhh--hhhHHHHHHHHHHHHHhccccc-----cchhhhH
Confidence 4455555555555555544 333344444443333221 1224455555555444333221 1114455
Q ss_pred HHHHHHHHHHH
Q psy8611 101 FRDYVCLIAAV 111 (280)
Q Consensus 101 l~eY~~~i~sv 111 (280)
+..|...+..+
T Consensus 94 l~~~~~~~~~i 104 (229)
T PF03114_consen 94 LEKFGEAMQEI 104 (229)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555444444
No 199
>PRK14139 heat shock protein GrpE; Provisional
Probab=20.27 E-value=5.9e+02 Score=22.25 Aligned_cols=49 Identities=8% Similarity=0.186 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8611 202 VRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL 250 (280)
Q Consensus 202 ~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~ 250 (280)
++.+++.+.-.+..+|+.+-+++.+|.+.....-...|-..|..-++..
T Consensus 47 e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnL 95 (185)
T PRK14139 47 KAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSL 95 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 3346777777777888888888888888887777777666666555543
No 200
>PLN02939 transferase, transferring glycosyl groups
Probab=20.11 E-value=1.2e+03 Score=25.83 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHhhh
Q psy8611 202 VRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDT-MVKYLEELMGYQQQV 276 (280)
Q Consensus 202 ~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~-~~~~We~~~~~~~~~ 276 (280)
.+..++.++..+++++..-...|..++.-+..+ +.+|.+++..+.+.+=...-+...+. --+.|..++-.+.++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lll~id~~ 426 (977)
T PLN02939 352 KVELLQQKLKLLEERLQASDHEIHSYIQLYQES-IKEFQDTLSKLKEESKKRSLEHPADDMPSEFWSRILLLIDGW 426 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcccccCchhhCCHHHHHHHHHHHHHH
Confidence 344677889999999999999999999988665 89999999987776544222211111 345787777666543
Done!