Query psy8611
Match_columns 280
No_of_seqs 105 out of 329
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 23:14:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dyt_A Sorting nexin-9; 3-heli 100.0 1.3E-27 4.6E-32 226.3 24.4 196 7-275 163-365 (366)
2 4akv_A Sorting nexin-33; trans 100.0 2.2E-26 7.4E-31 219.5 26.6 195 7-274 183-384 (386)
3 1uru_A Amphiphysin; endocytosi 99.7 4.6E-14 1.6E-18 125.0 25.6 202 11-277 36-237 (244)
4 2fic_A Bridging integrator 1; 99.6 2E-13 6.9E-18 121.9 27.8 199 11-277 51-250 (251)
5 4avm_A Bridging integrator 2; 99.1 1.8E-07 6.2E-12 83.2 27.2 201 9-276 30-230 (237)
6 4a3a_A Amphiphysin; structural 98.9 2.3E-06 7.8E-11 76.4 29.0 197 10-274 36-233 (243)
7 1zww_A SH3-containing GRB2-lik 98.9 6.5E-07 2.2E-11 80.2 22.7 191 9-275 28-242 (256)
8 2q12_A DIP13 alpha, DCC-intera 98.9 4.7E-06 1.6E-10 74.6 28.2 194 20-276 29-229 (265)
9 2q13_A DCC-interacting protein 98.8 4.6E-06 1.6E-10 78.5 26.2 194 20-276 29-229 (385)
10 1i4d_A Arfaptin 2, partner of 98.7 2.4E-05 8.3E-10 69.0 26.8 197 8-271 3-204 (224)
11 2z0v_A SH3-containing GRB2-lik 98.7 3.7E-06 1.2E-10 74.7 20.8 191 9-275 12-226 (240)
12 4h8s_A DCC-interacting protein 98.2 0.00089 3.1E-08 63.2 26.4 190 22-274 54-250 (407)
13 2ykt_A Brain-specific angiogen 97.2 0.12 4.1E-06 46.1 29.1 191 21-269 24-232 (253)
14 3plt_A Sphingolipid long chain 96.8 0.22 7.6E-06 43.8 26.2 77 43-142 40-116 (234)
15 2v0o_A FCHO2, FCH domain only 96.7 0.28 9.5E-06 43.0 31.2 63 209-276 185-247 (276)
16 3i2w_A Syndapin, LD46328P; EFC 96.3 0.52 1.8E-05 41.8 30.1 213 37-276 29-262 (290)
17 2efl_A Formin-binding protein 96.0 0.74 2.5E-05 40.7 27.9 55 217-276 210-264 (305)
18 2d1l_A Metastasis suppressor p 96.0 0.77 2.6E-05 40.9 26.1 203 14-270 19-237 (253)
19 2efk_A CDC42-interacting prote 96.0 0.79 2.7E-05 40.5 30.4 55 217-276 203-257 (301)
20 3haj_A Human pacsin2 F-BAR; pa 95.5 1.8 6.2E-05 41.6 29.9 36 215-250 220-255 (486)
21 3aco_A Pacsin2, protein kinase 95.2 1.8 6E-05 39.5 25.6 56 215-276 227-284 (350)
22 3m3w_A Pacsin3, protein kinase 95.2 1.8 6.1E-05 39.2 28.8 196 37-276 41-275 (320)
23 2x3v_A Syndapin I, protein kin 94.4 2.8 9.7E-05 37.8 30.6 36 214-249 217-252 (337)
24 3abh_A Pacsin2, protein kinase 94.1 3 0.0001 37.2 30.0 60 211-276 223-284 (312)
25 3g9g_A Suppressor of yeast pro 92.8 5.3 0.00018 36.0 21.8 61 209-274 192-252 (287)
26 4dyl_A Tyrosine-protein kinase 91.8 8.3 0.00028 36.0 26.5 50 222-276 207-256 (406)
27 3plt_A Sphingolipid long chain 84.7 20 0.00067 31.4 21.4 21 236-256 159-179 (234)
28 2fic_A Bridging integrator 1; 53.8 1E+02 0.0035 26.1 18.7 40 20-59 53-92 (251)
29 3ok8_A Brain-specific angiogen 45.8 1.5E+02 0.005 25.6 29.7 117 20-142 21-145 (222)
30 3trt_A Vimentin; cytoskeleton, 35.1 1.1E+02 0.0038 21.2 9.0 42 208-249 9-50 (77)
31 4hpq_C ATG17, KLTH0D15642P; au 32.8 3.1E+02 0.011 25.7 18.7 13 103-115 330-342 (413)
32 3iv1_A Tumor susceptibility ge 28.8 1.6E+02 0.0056 21.1 8.3 35 107-143 4-38 (78)
33 2q13_A DCC-interacting protein 28.8 3.2E+02 0.011 24.5 19.8 45 17-61 19-63 (385)
34 3ghg_A Fibrinogen alpha chain; 27.5 4.4E+02 0.015 25.7 12.7 12 107-118 118-129 (562)
35 2wuj_A Septum site-determining 24.7 37 0.0013 22.8 1.9 34 5-38 20-53 (57)
36 4gif_A Polycystic kidney disea 24.5 1.3E+02 0.0045 19.4 4.4 31 11-41 6-36 (45)
37 3hd7_A Vesicle-associated memb 23.4 2.1E+02 0.0073 20.7 7.9 28 194-221 26-53 (91)
38 3uun_A Dystrophin; triple heli 23.4 2.1E+02 0.007 20.5 11.8 21 205-225 82-102 (119)
39 3nvo_A Zinc transport protein 23.1 2.9E+02 0.01 23.1 8.0 22 97-118 239-260 (264)
40 1i84_S Smooth muscle myosin he 22.5 3.7E+02 0.013 28.4 10.1 19 16-34 861-879 (1184)
41 3te3_A Polycystic kidney disea 22.3 1.5E+02 0.0052 18.5 4.4 29 11-39 6-34 (39)
42 3hfe_A Potassium voltage-gated 22.2 1.3E+02 0.0045 17.8 3.7 22 17-38 8-29 (31)
43 1gd2_E Transcription factor PA 20.5 2.2E+02 0.0077 19.8 6.1 27 15-41 25-51 (70)
No 1
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.96 E-value=1.3e-27 Score=226.29 Aligned_cols=196 Identities=14% Similarity=0.222 Sum_probs=172.4
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHhcc------ccchhHHHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALA-RRDLSVYSAHLAKSLALVSNT------EEHASVSRVVSTLGELY 79 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~-r~dl~~~~~e~~~s~~~Ls~~------E~~~~ls~~l~~la~~~ 79 (280)
+.+.|++|+..+.|+..|+.++++|.+.+++++++ +.+++.++.++|.+|..||.+ +.+++|+++|+.+|+++
T Consensus 163 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~ 242 (366)
T 3dyt_A 163 LVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTY 242 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence 45668899999999999999999999999999977 688999999999999999974 66789999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q psy8611 80 ERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVT 159 (280)
Q Consensus 80 ~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~ 159 (280)
+.++.++++++.+|..+|+++|++|+++++|+|++|+.|..++. |+++. .|+...++++. .
T Consensus 243 ~~i~~l~~~qa~~d~~~l~E~L~~Y~~~l~avKd~l~~r~~aL~----------k~~e~-~kl~~~~K~~~-----~--- 303 (366)
T 3dyt_A 243 EEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIE----------KVKES-DKLVATSKITL-----Q--- 303 (366)
T ss_dssp HHHHHHHHHSGGGTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH----------HHHTH-HHHHHTTSSCH-----H---
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH-HHHHhccCcch-----h---
Confidence 99999999999999999999999999999999999999976544 44443 24555555431 1
Q ss_pred HHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8611 160 EVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEF 239 (280)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~df 239 (280)
.+++++++|+.||+.++.|+.||+.+|+.||
T Consensus 304 -------------------------------------------------~~~~~~~r~e~is~~~~~El~rF~~~r~~Df 334 (366)
T 3dyt_A 304 -------------------------------------------------DKQNMVKRVSIMSYALQAEMNHFHSNRIYDY 334 (366)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 240 KDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 240 k~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
+.+|.+|++.||++|++ +++.|+++++.+..
T Consensus 335 k~~l~~yl~~qi~~~k~-----~~~~w~~~l~~~~~ 365 (366)
T 3dyt_A 335 NSVIRLYLEQQVQFYET-----IAEKLRQALSRFPV 365 (366)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcC
Confidence 99999999999999999 99999999987643
No 2
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.95 E-value=2.2e-26 Score=219.53 Aligned_cols=195 Identities=16% Similarity=0.245 Sum_probs=169.5
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHhcc------ccchhHHHHHHHHHHHH
Q psy8611 7 QLGGWPVLEDKGLLLDSLESQLSHLHSSVEALALAR-RDLSVYSAHLAKSLALVSNT------EEHASVSRVVSTLGELY 79 (280)
Q Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r-~dl~~~~~e~~~s~~~Ls~~------E~~~~ls~~l~~la~~~ 79 (280)
+.++|++|+..+.|+..|+.+++.|.+.++++++++ .+++.++.++|.+|..||.. +.+++|+++|+.+|+++
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~ 262 (386)
T 4akv_A 183 LQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTY 262 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999874 67777777888888877762 45688999999999999
Q ss_pred HHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHH
Q psy8611 80 ERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVT 159 (280)
Q Consensus 80 ~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~ 159 (280)
+.+++++.+++.+|..+|+++|++|+++++|+|++|+.|..++. |+++.. |+...++++. .+
T Consensus 263 e~i~~l~~~Qa~~d~~~L~E~L~~Y~~ll~s~Kdll~~R~~aL~----------k~~ea~-kl~~~~K~~~-----~~-- 324 (386)
T 4akv_A 263 EAIGEMFAEQPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFA----------KVKESQ-RMSDEGRMVQ-----DE-- 324 (386)
T ss_dssp HHHHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-HHHHTTSSCH-----HH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-HHHHhCCccH-----HH--
Confidence 99999999999999999999999999999999999999965544 444443 5655666651 12
Q ss_pred HHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8611 160 EVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEF 239 (280)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~df 239 (280)
+++++++|+.||+.+++|+.||+.+|+.||
T Consensus 325 --------------------------------------------------~~e~~~r~e~IS~~~~~El~rF~~~Rv~Df 354 (386)
T 4akv_A 325 --------------------------------------------------ADGIRRRCRVVGFALQAEMNHFHQRRELDF 354 (386)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245688999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 240 KDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 240 k~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
+.+|.+|++.+|+||++ +++.|+.++|...
T Consensus 355 k~~l~eyle~qi~~~~~-----~~~~le~~l~~f~ 384 (386)
T 4akv_A 355 KHMMQNYLRQQILFYQR-----VGQQLEKTLRMYD 384 (386)
T ss_dssp HHHHHHHHHHHHHHHHH-----HHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhc
Confidence 99999999999999999 9999999999764
No 3
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=99.66 E-value=4.6e-14 Score=124.97 Aligned_cols=202 Identities=11% Similarity=0.111 Sum_probs=164.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEA 90 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a 90 (280)
|++|++....++.++..++.|.+.+......-+.+......||.++..+...+. +...++..+++. +..++.+..
T Consensus 36 D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~~~~~~---~~~~~~~~~ 110 (244)
T 1uru_A 36 DEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQW--SGYDALQAQTGA---SESLWADFA 110 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS--TTHHHHHHHHHH---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--CCchHHHHHHHH---HHHHHHHHH
Confidence 999999999999999999999999999999888999888899999999876543 223445444443 444444444
Q ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhh
Q psy8611 91 GADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTL 170 (280)
Q Consensus 91 ~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l 170 (280)
..-...+.+||..|+.++..++.++..|.+.+.+|..+...+.|.+....| .....|+.
T Consensus 111 ~~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k---~kd~~kl~------------------ 169 (244)
T 1uru_A 111 HKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK---RKDDVKLT------------------ 169 (244)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB---TTBCCTTT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc---CccHHHHH------------------
Confidence 444456899999999999999999999999999999999988876642111 11122222
Q ss_pred ccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8611 171 FNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL 250 (280)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~ 250 (280)
.++.+.+.+++.|+.++..++.|+..|...|+..|...|..|+..|
T Consensus 170 ----------------------------------~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q 215 (244)
T 1uru_A 170 ----------------------------------KGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATE 215 (244)
T ss_dssp ----------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667789999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHhhhc
Q psy8611 251 MGYQQQEFKDTMVKYLEELMGYQQQVS 277 (280)
Q Consensus 251 I~~~k~~~~~~~~~~We~~~~~~~~~~ 277 (280)
+.||.+ +...|+.+.+.+..++
T Consensus 216 ~~~~~~-----~~~~~~~l~~~~~~l~ 237 (244)
T 1uru_A 216 QVFHNE-----TAKIYSELEAIVDKLA 237 (244)
T ss_dssp HHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHHHHHHh
Confidence 999999 9999999999887764
No 4
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=99.65 E-value=2e-13 Score=121.92 Aligned_cols=199 Identities=14% Similarity=0.109 Sum_probs=160.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-HHHHHHHh
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYER-TEGVYAAE 89 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~-~~~~~~~~ 89 (280)
|++|+....+++.++..++.|.+.+......-+.+......||.++..+.....+ -...+..+++.+.. +.++...
T Consensus 51 D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~d~~~~- 127 (251)
T 2fic_A 51 DEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWP--GRDEANKIAENNDLLWMDYHQK- 127 (251)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTST--THHHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--CchhHHHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999987543321 23445555555542 2222222
Q ss_pred hhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhh
Q psy8611 90 AGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKT 169 (280)
Q Consensus 90 a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~ 169 (280)
-...+.+||..|+.++..++.++..|...+.+|..+...+.|.+....| ...| +
T Consensus 128 ---l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k-----d~~k-------l----------- 181 (251)
T 2fic_A 128 ---LVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKK-----DEAK-------I----------- 181 (251)
T ss_dssp ---HHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------C-------H-----------
T ss_pred ---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcC-----cHHH-------H-----------
Confidence 1235899999999999999999999999999999999888887665432 1122 2
Q ss_pred hccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 170 LFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
.+++...+.+++.|+.++..++.|+..|...++..|...|..|+..
T Consensus 182 ----------------------------------~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~ 227 (251)
T 2fic_A 182 ----------------------------------AKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGL 227 (251)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2566677888999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHhhhc
Q psy8611 250 LMGYQQQEFKDTMVKYLEELMGYQQQVS 277 (280)
Q Consensus 250 ~I~~~k~~~~~~~~~~We~~~~~~~~~~ 277 (280)
|+.||.+ +.+.|+.+.+.+..++
T Consensus 228 Q~~f~~~-----~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 228 EENFHKE-----MSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHTC-
T ss_pred HHHHHHH-----HHHHHHHHHHHHHhhC
Confidence 9999999 9999999999987654
No 5
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=99.08 E-value=1.8e-07 Score=83.19 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=156.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
-.|+.|+..-.....+|..++.|.+-+..-...=+.+...-..++.+|..+...... +. ..+..+. ..+..++.+
T Consensus 30 T~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~~~~-~~-~~~~~~~---~~~~~l~~~ 104 (237)
T 4avm_A 30 TKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWD-GH-EELKAIV---WNNDLLWED 104 (237)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTST-TH-HHHHHHH---HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccC-cH-HHHHHHH---HHHHHHHHH
Confidence 369999999999999999999999999888888888888888999999988764432 11 2222222 222222222
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q psy8611 89 EAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLK 168 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~ 168 (280)
....-......|+..|..++..++.++..|...+.+|..+...+.+.+... .+ |
T Consensus 105 ~~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~kl~~k~------~k-d------------------- 158 (237)
T 4avm_A 105 YEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLEAVQNAK------KK-D------------------- 158 (237)
T ss_dssp HHHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS------SC-C-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------CC-c-------------------
Confidence 111111125799999999999999999999999999999888888765421 11 1
Q ss_pred hhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 169 TLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
..++.+++...+.++..|+.++..++.|+-.|..-|+.=|-..+..|+.
T Consensus 159 -------------------------------~~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~ 207 (237)
T 4avm_A 159 -------------------------------EAKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISN 207 (237)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123367777888999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy8611 249 ELMGYQQQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 249 ~~I~~~k~~~~~~~~~~We~~~~~~~~~ 276 (280)
.|..|+.+ +...|..+.+.+...
T Consensus 208 ~q~~f~~~-----~~~~~~~l~~~~~~~ 230 (237)
T 4avm_A 208 LRDVFYRE-----MSKLNHNLYEVMSKL 230 (237)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHhhHHHHHHHH
Confidence 99999999 999999998876544
No 6
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=98.94 E-value=2.3e-06 Score=76.41 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=151.4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH-HHHH
Q psy8611 10 GWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEG-VYAA 88 (280)
Q Consensus 10 ~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~-~~~~ 88 (280)
.|+.|+..-.....+|..++.|.+-+..-...=+++..+-..++.+|..+-....+ ....+..+++.+..+-. +...
T Consensus 36 ~D~~F~~~e~~F~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~ae~l~~ly~p~~~--~~~~~~~~~~~~~~l~~d~~~~ 113 (243)
T 4a3a_A 36 KDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWY--GREDVKMVGEKCDVLWEDFHQK 113 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTST--THHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc--CccchHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999888888788888888999999988643321 11122233444333222 2222
Q ss_pred hhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHh
Q psy8611 89 EAGADLNILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLK 168 (280)
Q Consensus 89 ~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~ 168 (280)
. .| ....|+..|+.++..++.++..|...+.+|..+...+.+.++... + |
T Consensus 114 l--~d--~~l~Pl~~l~~~f~~i~k~I~KR~~KllDYD~~~~k~~kL~~K~~------k-d------------------- 163 (243)
T 4a3a_A 114 L--VD--GSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHLEALQSSKR------K-D------------------- 163 (243)
T ss_dssp H--HH--THHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS------C-C-------------------
T ss_pred H--HH--HHHHHHHHHHHHChHHHHHHHHhcchHHHHHHHHHHHHHHHhccc------c-c-------------------
Confidence 2 12 235799999999999999999999999999998888887654321 1 1
Q ss_pred hhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy8611 169 TLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLE 248 (280)
Q Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e 248 (280)
..+|.+++...+.+++.|+.++..++.|+-.|..-|+.=|-..+..|+.
T Consensus 164 -------------------------------~~kl~kae~el~~Ak~~Ye~lN~~L~eELP~l~~~r~~~~~~~~~s~i~ 212 (243)
T 4a3a_A 164 -------------------------------ESRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSS 212 (243)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223367777788899999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 249 ELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 249 ~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
.|..||.+ +......+.+.+.
T Consensus 213 ~Q~~f~~e-----~~k~~~~l~~~~~ 233 (243)
T 4a3a_A 213 LEAKFHKE-----IAVLCHKLYEVMT 233 (243)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHhHHHHHH
Confidence 99999999 8888777766553
No 7
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=98.87 E-value=6.5e-07 Score=80.24 Aligned_cols=191 Identities=8% Similarity=0.054 Sum_probs=134.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHh-----hhHHHHHHHHHHHHHHHhc-cccc
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEA-----------------LALAR-----RDLSVYSAHLAKSLALVSN-TEEH 65 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~-----------------l~k~r-----~dl~~~~~e~~~s~~~Ls~-~E~~ 65 (280)
+-|+.|.+.-..++.+......|++.... +.+.+ .-+......||.++...+. +.++
T Consensus 28 el~~d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k~~g~~k~~~~p~~~~~L~~~m~~~~~~l~~~ 107 (256)
T 1zww_A 28 KLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDD 107 (256)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC---------------------CCHHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHhhCCCC
Confidence 45889999999999999999988888873 22211 0011111235555544444 1233
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 66 ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144 (280)
Q Consensus 66 ~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~ 144 (280)
.+++.+|..+|+++.++++....+-..=...|.+||..++. .+..+...-..+.+...+|..+...+.|
T Consensus 108 s~~g~aL~~~g~a~~~la~~~~~~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~~k---------- 177 (256)
T 1zww_A 108 CNFGPALGEVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQGK---------- 177 (256)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------
Confidence 46999999999999999999877666666678899988654 6666666555555555555543322111
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMI 224 (280)
Q Consensus 145 ~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~i 224 (280)
.++..++.++.+|+...+.+
T Consensus 178 ------------------------------------------------------------~~eeEle~A~~~fe~~~e~~ 197 (256)
T 1zww_A 178 ------------------------------------------------------------IPDEELRQALEKFDESKEIA 197 (256)
T ss_dssp ------------------------------------------------------------SCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------------------ccHHHHHHHHHHHHHHHHHH
Confidence 12233466789999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 225 KREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 225 k~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
..+|..|-... .++-..|..|++.|+.||++ +.+.++.+.|.+..
T Consensus 198 ~~~m~~l~~~e-~e~~~~L~~~v~aQl~y~~~-----~~e~L~~l~~~l~~ 242 (256)
T 1zww_A 198 ESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQ-----AVQILQQVTVRLEE 242 (256)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 99999997554 56668999999999999999 99999999999864
No 8
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=98.86 E-value=4.7e-06 Score=74.60 Aligned_cols=194 Identities=9% Similarity=0.073 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-----cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-----TEEHASVSRVVSTLGELYERTEGVYAAEAGADL 94 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-----~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~ 94 (280)
.++.++..|+++.+.+..+...-++++.+...|+.++..++. ..+...+..+|..||++...+.........+-.
T Consensus 29 ~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~l~~~~~ 108 (265)
T 2q12_A 29 DATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLA 108 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777778888888888899988764 223356789999999999999999887776666
Q ss_pred hHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccC
Q psy8611 95 NILAELFRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNC 173 (280)
Q Consensus 95 ~~l~~~l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~ 173 (280)
..+..||..++ .-|..+|+.=..=++.+..|..+..-.. .+.....+++
T Consensus 109 ~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~al~k~~-------~~~k~k~~e~----------------------- 158 (265)
T 2q12_A 109 DAMMFPITQFKERDLKEILTLKEVFQIASNDHDAAINRYS-------RLSKKRENDK----------------------- 158 (265)
T ss_dssp HHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTSCCCHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------cCCCCCcchh-----------------------
Confidence 67888888876 5566666643333333333333322211 1221111111
Q ss_pred CCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 174 CPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGY 253 (280)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~ 253 (280)
.+.+++..+..+++.|...+-....-+...+..+-.+|-..|..|+.+|..|
T Consensus 159 ----------------------------~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~f 210 (265)
T 2q12_A 159 ----------------------------VKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISF 210 (265)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1125666667778888888877777888888888889999999999999999
Q ss_pred HhhhhhhHHHHHH-HHHHHHHhhh
Q psy8611 254 QQQEFKDTMVKYL-EELMGYQQQV 276 (280)
Q Consensus 254 ~k~~~~~~~~~~W-e~~~~~~~~~ 276 (280)
|++ ..+.| +.+.|.+..+
T Consensus 211 f~~-----g~e~~~~~~~p~~~~l 229 (265)
T 2q12_A 211 FKM-----GSENLNEQLEEFLANI 229 (265)
T ss_dssp HHH-----HHHHSCHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHH
Confidence 999 88888 4777777655
No 9
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=98.77 E-value=4.6e-06 Score=78.50 Aligned_cols=194 Identities=9% Similarity=0.073 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-----cccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN-----TEEHASVSRVVSTLGELYERTEGVYAAEAGADL 94 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~-----~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~ 94 (280)
.++.++..|+.+.+.+..+...-+++..+...|+.+|..++. ...+..+..+|..||++...+.........+-.
T Consensus 29 ~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~l~~~~~ 108 (385)
T 2q13_A 29 DATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLA 108 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777888888888888888765 122345778999999999999888877666665
Q ss_pred hHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccC
Q psy8611 95 NILAELFRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNC 173 (280)
Q Consensus 95 ~~l~~~l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~ 173 (280)
..+..||..++ ..|..+|+.=. .|..+..++....+....+.....+++ .
T Consensus 109 ~~~~~PL~~f~~~di~~~ke~kk-------~fek~~~~yd~al~k~~~~~k~k~~e~------~---------------- 159 (385)
T 2q13_A 109 DAMMFPITQFKERDLKEILTLKE-------VFQIASNDHDAAINRYSRLSKKRENDK------V---------------- 159 (385)
T ss_dssp HHTHHHHHHHHHTHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTCCSSSCCHH------H----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcCCCCCchhh------H----------------
Confidence 66778888765 33555554311 222223333322222111111111111 1
Q ss_pred CCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 174 CPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGY 253 (280)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~ 253 (280)
+.+++..+..+++.|...+-....-|...+..+-.+|-..|..|+.+++.|
T Consensus 160 -----------------------------~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~f 210 (385)
T 2q13_A 160 -----------------------------KYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISF 210 (385)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125566677778888888887777899999999999999999999999999
Q ss_pred HhhhhhhHHHHHH-HHHHHHHhhh
Q psy8611 254 QQQEFKDTMVKYL-EELMGYQQQV 276 (280)
Q Consensus 254 ~k~~~~~~~~~~W-e~~~~~~~~~ 276 (280)
|++ ..+.| +.+.|.+..+
T Consensus 211 f~~-----g~~~~~~~~~~~~~~l 229 (385)
T 2q13_A 211 FKM-----GSENLNEQLEEFLANI 229 (385)
T ss_dssp HHH-----HHHHSCHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHHHHHH
Confidence 999 99999 4888877655
No 10
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=98.71 E-value=2.4e-05 Score=68.96 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=145.8
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHH
Q psy8611 8 LGGWPVLEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYA 87 (280)
Q Consensus 8 ~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~ 87 (280)
...|.+++.+.+.+......-+.|.+.+..+.++=..|+.....||..|..+|.-++ .++..|..+|+++..+...-.
T Consensus 3 rtvD~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p--~l~~~f~~~~~~~r~~~k~g~ 80 (224)
T 1i4d_A 3 RTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSP--ELQEEFGYNAETQKLLCKNGE 80 (224)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc--HHHHHHHHHHHHHHHHHHhHH
Confidence 357999999999999999999999999999999999999999999999999998874 699999999999998766554
Q ss_pred HhhhhhhhHHHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH
Q psy8611 88 AEAGADLNILAELFRDYVCLIA-----AVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVR 162 (280)
Q Consensus 88 ~~a~~e~~~l~~~l~eY~~~i~-----svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~ 162 (280)
. |..+|..++.-++ +|.||+.. ...|+.|.-+...-+...+.+...++.
T Consensus 81 ~--------Ll~~L~~f~s~l~T~~~kaI~DT~lT----Ik~ye~aR~EY~ay~~~~ee~~~~~~~-------------- 134 (224)
T 1i4d_A 81 T--------LLGAVNFFVSSINTLVTKTMEDTLMT----VKQYEAARLEYDAYRTDLEELSLGPRD-------------- 134 (224)
T ss_dssp H--------HHHHHHHHHHHHHHHHHTHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC-------------------
T ss_pred H--------HHHHHHHHHHHHHHHHhHhccHHHHH----HHHHHHHhHhHHHHHhhHHHhhccccc--------------
Confidence 3 5555555544444 33444333 444555555555444332222211100
Q ss_pred HHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy8611 163 IKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDT 242 (280)
Q Consensus 163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~ 242 (280)
. ++ .-+++.++..+..++.+|+.+-.-|..-|+-.+..|+.+|...
T Consensus 135 ---------------~---------------~~----l~rve~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~q 180 (224)
T 1i4d_A 135 ---------------A---------------GT----RGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQ 180 (224)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------c---------------cc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 0 00 0012267888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q psy8611 243 MVKYLEELMGYQQQEFKDTMVKYLEELMG 271 (280)
Q Consensus 243 l~~~~e~~I~~~k~~~~~~~~~~We~~~~ 271 (280)
|.-|......|+.+ +.+..+..++
T Consensus 181 L~~~~~al~~y~~~-----~~~~l~~~~~ 204 (224)
T 1i4d_A 181 LLLFHNAVSAYFAG-----NQKQLEQTLQ 204 (224)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHCC---
T ss_pred HHHHHHHHHHHHHH-----hHHHHHHHHH
Confidence 99999999999998 8888766553
No 11
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=98.67 E-value=3.7e-06 Score=74.68 Aligned_cols=191 Identities=13% Similarity=0.094 Sum_probs=130.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhHH------------------HHHHHHHHHHHHHhc-cccc
Q psy8611 9 GGWPVLEDKGLLLDSLESQLSHLHSSVEALALA----RRDLS------------------VYSAHLAKSLALVSN-TEEH 65 (280)
Q Consensus 9 E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~----r~dl~------------------~~~~e~~~s~~~Ls~-~E~~ 65 (280)
+-|+.|...-..+|.+......|.+.......- |..+. ....-||.++...+. +.+.
T Consensus 12 el~~d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~~~~L~~~m~~~~~~l~~d 91 (240)
T 2z0v_A 12 KLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELGED 91 (240)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCHHHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHhhcCCC
Confidence 458888888888888888888888877654210 11110 001235555544443 2234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 66 ASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYV-CLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLEL 144 (280)
Q Consensus 66 ~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~-~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~ 144 (280)
..++.+|..+|++..+++.....+-..=...|.+||..++ ..+..+...-+.+.+...+|..+..-+
T Consensus 92 s~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~------------ 159 (240)
T 2z0v_A 92 STFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRV------------ 159 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTT------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 5799999999999999999988766666667888888866 455555554444444444444331111
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 145 AGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMI 224 (280)
Q Consensus 145 ~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~i 224 (280)
.| ..+..++.++.+|+...+.+
T Consensus 160 ----~k------------------------------------------------------~~eeEl~~A~~~fe~~~e~~ 181 (240)
T 2z0v_A 160 ----GK------------------------------------------------------IPDEEVRQAVEKFEESKELA 181 (240)
T ss_dssp ----TS------------------------------------------------------SCHHHHHHHHHHHHHHHHHH
T ss_pred ----cc------------------------------------------------------ccHHHHHHHHHHHHHHHHHH
Confidence 00 11333466788999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q psy8611 225 KREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQ 275 (280)
Q Consensus 225 k~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~ 275 (280)
..+|..|-..+ .++-..|..|++.|+.||++ +.+.++.+.|.+..
T Consensus 182 ~~~m~~~~~~~-~e~l~~l~~~v~aQl~y~~~-----~~e~L~~l~~~l~~ 226 (240)
T 2z0v_A 182 ERSMFNFLEND-VEQVSQLAVFIEAALDYHRQ-----STEILQELQSKLQM 226 (240)
T ss_dssp HHHHHHHHHST-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 99999997665 55556999999999999999 99999999999864
No 12
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=98.23 E-value=0.00089 Score=63.24 Aligned_cols=190 Identities=7% Similarity=0.072 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc-----ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Q psy8611 22 DSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT-----EEHASVSRVVSTLGELYERTEGVYAAEAGADLNI 96 (280)
Q Consensus 22 ~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~-----E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~ 96 (280)
+.|+..|+.+.+.+..+...-+++..+...|+.++..++.. .....+..+|..|+.+...+.........+-...
T Consensus 54 ~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~~~L~~~~~~~ 133 (407)
T 4h8s_A 54 GTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLHTELAKQLADT 133 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555666666666666554432 1223466788999999999888877766665556
Q ss_pred HHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHhhhccCCC
Q psy8611 97 LAELFRDYVC-LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCP 175 (280)
Q Consensus 97 l~~~l~eY~~-~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~~~~~~l~~~~~ 175 (280)
+.+||..++. .|..+++.= ..|..+...+........++......+++
T Consensus 134 i~~pL~~f~k~di~~~ke~k-------K~Fek~~~~Yd~~l~Ky~~~~k~k~~~~~------------------------ 182 (407)
T 4h8s_A 134 MVLPIIQFREKDLTEVSTLK-------DLFGLASNEHDLSMAKYSRLPKKKENEKV------------------------ 182 (407)
T ss_dssp THHHHHHHHHTHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHSCSTTCCHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhccccCCchHH------------------------
Confidence 7777777543 344444421 12222333333322222222111111111
Q ss_pred CCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8611 176 SDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQ 255 (280)
Q Consensus 176 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k 255 (280)
..+....+..+++.|...+-.....|..++..+..+|-..|..|+..+..|++
T Consensus 183 ---------------------------~~e~~~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~ 235 (407)
T 4h8s_A 183 ---------------------------KTEVGKEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFK 235 (407)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11333445556677777666666777888888888999999999999999999
Q ss_pred hhhhhHHHHHH-HHHHHHHh
Q psy8611 256 QEFKDTMVKYL-EELMGYQQ 274 (280)
Q Consensus 256 ~~~~~~~~~~W-e~~~~~~~ 274 (280)
+ ..+.| +.+-|.+.
T Consensus 236 ~-----~~~~~~~~~~~~~~ 250 (407)
T 4h8s_A 236 K-----GAEMFSKRMDSFLS 250 (407)
T ss_dssp H-----HHHHSCHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHH
Confidence 8 77776 33444433
No 13
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=97.17 E-value=0.12 Score=46.11 Aligned_cols=191 Identities=12% Similarity=0.065 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh--
Q psy8611 21 LDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT----EEHASVSRVVSTLGELYERTEGVYAAEAGADL-- 94 (280)
Q Consensus 21 i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~----E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~-- 94 (280)
++..-..+.+|........+.-+.+.....-|..+|..+|.. -.+..|+.+|..+++.+..+..-+......=.
T Consensus 24 m~~~~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~ 103 (253)
T 2ykt_A 24 MEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNE 103 (253)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667778888888888888888888888999999888873 23468999999999999998877765444432
Q ss_pred --hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------chhHHHHHHHHHHHHHH
Q psy8611 95 --NILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGR--------SDKSIQAAHEVTEVRIK 164 (280)
Q Consensus 95 --~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~--------~dk~~~~~~Ei~~~~~~ 164 (280)
.+|...+.++..++.+... +....|..+..+|.|.....-|+....+ .++..++.
T Consensus 104 li~pL~~kie~d~K~v~~~~K------~~~~e~k~~~~~l~K~~~e~~kl~KK~k~gk~~~~~~~~~~~~~--------- 168 (253)
T 2ykt_A 104 LLTQLEQKVELDSRYLSAALK------KYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYI--------- 168 (253)
T ss_dssp THHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCHHHHHHH---------
T ss_pred HHHHHHHHHHhhHHHHHHHHH------HHHHHHHHhHhHHHHHHHHHHHHHhhccCCCCcchhHHHHHHHH---------
Confidence 2555555555555554433 2244455566666666655545543221 12222221
Q ss_pred HHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy8611 165 YLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMV 244 (280)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~ 244 (280)
..+...+.+++.+-....++.--=++.|-.-|-..+.
T Consensus 169 -------------------------------------------e~v~~~~~~le~~~~~~lr~aL~EERrRycflv~~~~ 205 (253)
T 2ykt_A 169 -------------------------------------------DAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQC 205 (253)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233334566666666666666667888888888888
Q ss_pred HHHHHHHHHHhh--hhhhHHHHHHHHH
Q psy8611 245 KYLEELMGYQQQ--EFKDTMVKYLEEL 269 (280)
Q Consensus 245 ~~~e~~I~~~k~--~~~~~~~~~We~~ 269 (280)
-++...+.++.+ .+.+..+..|..+
T Consensus 206 ~v~~~~~~~h~~~~~~L~~~l~~w~~l 232 (253)
T 2ykt_A 206 AVAKNSAAYHSKGKELLAQKLPLWQQA 232 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888888866 1223345555555
No 14
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.22 Score=43.81 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=57.9
Q ss_pred hhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 43 RDLSVYSAHLAKSLALVSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIAAVKDTFHARGKIY 122 (280)
Q Consensus 43 ~dl~~~~~e~~~s~~~Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i~svK~~l~~R~~~~ 122 (280)
..++.+....+.++..|+..+ .+.|++....+|-....++++... |...++.|...+-+||++
T Consensus 40 e~~are~~~~A~~Ls~WG~~e-dddl~DIsdklgvLl~e~ge~e~~--------~a~~~d~yR~~LK~IR~~-------- 102 (234)
T 3plt_A 40 EVVASERREAAKQLSLWGADN-DDDVSDVTDKLGVLIYELGELQDQ--------FIDKYDQYRVTLKSIRNI-------- 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH--------
Confidence 334444456778888898877 468999999888888888888876 899999999999999884
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy8611 123 QTWQSWQIILNKKREAKVKL 142 (280)
Q Consensus 123 ~~~~~a~~~L~Kkr~~~~kL 142 (280)
+..+...|..++++
T Consensus 103 ------E~svqp~R~~R~~l 116 (234)
T 3plt_A 103 ------EASVQPSRDRKEKI 116 (234)
T ss_dssp ------HHHHHHHHHHHHHH
T ss_pred ------HHHhhHHHHHHHHH
Confidence 55555555555444
No 15
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=96.70 E-value=0.28 Score=42.97 Aligned_cols=63 Identities=13% Similarity=0.196 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy8611 209 KVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 209 ~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~ 276 (280)
..+..+.+|+.--..+...+..++.+|+.-||.+|..|+...-..... +...-+.+...+.+|
T Consensus 185 ~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~i 247 (276)
T 2v0o_A 185 KYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQ-----IGQVHEEFINNMANT 247 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-----HHHHHHHHHHHHHhC
Confidence 445556677666667777888999999999999999999765544444 444455555554444
No 16
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=96.33 E-value=0.52 Score=41.81 Aligned_cols=213 Identities=14% Similarity=0.098 Sum_probs=105.7
Q ss_pred HHHHHhhhHH----HHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHH---
Q psy8611 37 ALALARRDLS----VYSAHLAKSLAL-VSNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLI--- 108 (280)
Q Consensus 37 ~l~k~r~dl~----~~~~e~~~s~~~-Ls~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~~i--- 108 (280)
...+.|..+. ..+..++..+.. +....+...+..++..+-...+.++..+...+..=...+..||..|..-.
T Consensus 29 ~f~keRa~iE~~Yak~L~kL~~~~~~~~~~~~~~gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k 108 (290)
T 3i2w_A 29 QLIQERADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHH 108 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444454444 444455555432 22222223577788777777777777777665554445677777766532
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHHHHHHHhhhccCCCCCcccc
Q psy8611 109 -----AAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRS--DKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILI 181 (280)
Q Consensus 109 -----~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~--dk~~~~~~Ei~~~~~~~~~~~l~~~~~~~~~~~ 181 (280)
...|.+...=.++...|......|.|.+....+....... .+...+..+.. .
T Consensus 109 ~~~~~kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~---------------------~ 167 (290)
T 3i2w_A 109 TLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSS---------------------L 167 (290)
T ss_dssp ETTEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC---------------------------------
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCC---------------------C
Confidence 1224444444455666667777777777766554332111 11000000000 0
Q ss_pred ccccccccc-CC----CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy8611 182 VGTQGRTVS-GG----FRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL-MGYQQ 255 (280)
Q Consensus 182 ~~~~~~~~~-~g----~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~-I~~~k 255 (280)
++..-.++- +- ..-..++.+.... -...+..+.+|+.-=..+...+..++.+|+.-||.+|..|+... +....
T Consensus 168 s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~-v~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~~~~~~~~ 246 (290)
T 3i2w_A 168 SPDQVKKMHDRVQKTKDQVQKCREKYEQA-IAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQ 246 (290)
T ss_dssp --------CTTSSTTTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 000000000 00 0001111111111 12234445667777778888899999999999999999999753 12112
Q ss_pred hhhhhHHHHHHHHHHHHHhhh
Q psy8611 256 QEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 256 ~~~~~~~~~~We~~~~~~~~~ 276 (280)
. +...-+.+...+.+|
T Consensus 247 ~-----~~~~~~~~~~~i~~i 262 (290)
T 3i2w_A 247 S-----LPQIYEEFSHTINNA 262 (290)
T ss_dssp T-----HHHHHHHHHHHHHTC
T ss_pred h-----HHHHHHHHHHHHHhc
Confidence 3 344445555554444
No 17
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=96.03 E-value=0.74 Score=40.70 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy8611 217 FAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 217 ~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~ 276 (280)
|+.--..+...+..++.+|..-|+..|..|+......... +...-+.+...+++|
T Consensus 210 ~~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~~~~~~~~~~-----~~~~~~~l~~~~~~i 264 (305)
T 2efl_A 210 YHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPI-----IGKCLDGIVKAAESI 264 (305)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH-----HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHhc
Confidence 4444445566788999999999999999999865544444 444445555544444
No 18
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=96.03 E-value=0.77 Score=40.88 Aligned_cols=203 Identities=12% Similarity=0.049 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-----cchhHHHHHHHHHHHHHHHHHHHHH
Q psy8611 14 LEDKGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNTE-----EHASVSRVVSTLGELYERTEGVYAA 88 (280)
Q Consensus 14 F~~~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~E-----~~~~ls~~l~~la~~~~~~~~~~~~ 88 (280)
|..+.+-+...-..+.++.+......++=+.+.....-|..+|..++..- .+..|+.+|..+++.+..+..-+..
T Consensus 19 ~~~ii~~mk~~~P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie~~l~~ 98 (253)
T 2d1l_A 19 FQTIISDMKGSYPVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIEAKLRQ 98 (253)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344455566666666666666666666677888888887632 2467899999999999888877665
Q ss_pred hhhhhhh----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q psy8611 89 EAGADLN----ILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIK 164 (280)
Q Consensus 89 ~a~~e~~----~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~~~dk~~~~~~Ei~~~~~~ 164 (280)
....=.. +|...+.....++.....- ....|..+..++.|+.....|+....+..
T Consensus 99 ~~k~~~~eli~pLe~k~e~d~k~~~~~~K~------~~~~~k~~r~elkk~~~~~~k~qkK~rk~--------------- 157 (253)
T 2d1l_A 99 FSSALIDCLINPLQEQMEEWKKVANQLDKD------HAKEYKKARQEIKKKSSDTLKLQKKAKKV--------------- 157 (253)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHSSCG---------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHhccc---------------
Confidence 4433333 4444444444555433222 23345566777777766665654322110
Q ss_pred HHHhhhccCCCCCcccccccccccccCCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy8611 165 YLLKTLFNCCPSDSILIVGTQGRTVSGGFRSD-ICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTM 243 (280)
Q Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l 243 (280)
| ..|.+.. .... ..-.-++.-..+++.+-..-.++.--=++.|..-|-..+
T Consensus 158 ----------~--------------~~gk~~~~~~l~----~a~q~v~~~~~~le~~~~~~~r~AL~EERrRycflv~~l 209 (253)
T 2d1l_A 158 ----------D--------------AQGRGDIQPQLD----SALQDVNDKYLLLEETEKQAVRKALIEERGRFCTFISML 209 (253)
T ss_dssp ----------G--------------GTTTTSHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------c--------------ccCCCcchHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000 0001 111122333345555555555565556778888899999
Q ss_pred HHHHHHHHH------HHhhhhhhHHHHHHHHHH
Q psy8611 244 VKYLEELMG------YQQQEFKDTMVKYLEELM 270 (280)
Q Consensus 244 ~~~~e~~I~------~~k~~~~~~~~~~We~~~ 270 (280)
.-+++.++. ++++ .+..|..+.
T Consensus 210 ~pv~~~e~~~~~e~~~l~~-----~l~~~~~~~ 237 (253)
T 2d1l_A 210 RPVIEEEISMLGEITHLQT-----ISEDLKSLT 237 (253)
T ss_dssp HHHHHHHHGGGGGHHHHHH-----HHHHHHHHT
T ss_pred hHHHHHHHHHhhhHHHHHH-----HHHHHHHHh
Confidence 999998886 4555 666676554
No 19
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=95.97 E-value=0.79 Score=40.55 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy8611 217 FAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 217 ~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~ 276 (280)
|..-=..+...+..++.+|+.-|+..|..|+......... +....+.+...+.+|
T Consensus 203 ~~~~~p~~~~~lQ~lee~r~~~lk~~l~~~~~~~~~~~~~-----~~~~~~~l~~~~~~i 257 (301)
T 2efk_A 203 YFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPI-----IAKCLEGMKVAANAV 257 (301)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHHHHHHHHHhc
Confidence 3333344566678888999999999999999866555544 445555555555544
No 20
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=95.54 E-value=1.8 Score=41.56 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy8611 215 EDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEEL 250 (280)
Q Consensus 215 ~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~ 250 (280)
..|+.--..+...+..++.+|+.-||++|..|....
T Consensus 220 ~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~l 255 (486)
T 3haj_A 220 PQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 255 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555655666777889999999999999999998643
No 21
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=95.23 E-value=1.8 Score=39.53 Aligned_cols=56 Identities=9% Similarity=0.194 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHhhh
Q psy8611 215 EDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQ--QQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 215 ~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~--k~~~~~~~~~~We~~~~~~~~~ 276 (280)
..|+.--..+...+..++.+|+.-||+.|..|+.. +... .. +-..-+.+...+.+|
T Consensus 227 ~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~-l~~~~~~~-----~~~~~~~l~~~i~~i 284 (350)
T 3aco_A 227 PQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH-LDLSNVAG-----YKAIYHDLEQSIRAA 284 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSTTCHH-----HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhccchh-----HHHHHHHHHHHHHhC
Confidence 44554445556677889999999999999999886 4322 23 444455555555444
No 22
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=95.16 E-value=1.8 Score=39.24 Aligned_cols=196 Identities=9% Similarity=0.082 Sum_probs=102.9
Q ss_pred HHHHHhhhHHHH----HHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhHHHHHH-----
Q psy8611 37 ALALARRDLSVY----SAHLAKSLALV-SNTEEHASVSRVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVC----- 106 (280)
Q Consensus 37 ~l~k~r~dl~~~----~~e~~~s~~~L-s~~E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~~~l~~~l~eY~~----- 106 (280)
...+.|..+... +..++..+... +.......+..++..+-...+.++..+...+..=...+..+|..|..
T Consensus 41 ~f~keRa~iE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k 120 (320)
T 3m3w_A 41 SCFQERARIEKAYAQQLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHR 120 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444555555443 33444443222 11112235788888888888888888887766655567777777653
Q ss_pred -HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------------------C-chhHHHHHHHHH
Q psy8611 107 -LIAAV---KDTFHARGKIYQTWQSWQIILNKKREAKVKLELAG----------------------R-SDKSIQAAHEVT 159 (280)
Q Consensus 107 -~i~sv---K~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~~~~----------------------~-~dk~~~~~~Ei~ 159 (280)
+++.. |.+...=.++...|......|.|.|...++..... + ..|+..+..++.
T Consensus 121 ~~~~~~ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d~~~s~ke~~K~~~k~~k~~~~~~ 200 (320)
T 3m3w_A 121 PVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAE 200 (320)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCC---CCSSSSSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 11122 22222223445555555556666555444321100 0 011112222222
Q ss_pred HHHHHHHHhhhccCCCCCcccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy8611 160 EVRIKYLLKTLFNCCPSDSILIVGTQGRTVSGGFRSDICDEQVRVKWEHKVERCQEDFAAISAMIKREYAGFEASRVQEF 239 (280)
Q Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~df 239 (280)
..+-.| . ..-...+..+..|+.--..+-..+..++.+|+.-|
T Consensus 201 ~a~~~Y-------------------------------------~-~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~l 242 (320)
T 3m3w_A 201 KMKTQY-------------------------------------E-QTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFF 242 (320)
T ss_dssp HHHHHH-------------------------------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------------------------------------H-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1 11222344556677666778888999999999999
Q ss_pred HHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHhhh
Q psy8611 240 KDTMVKYLEELMGYQ--QQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 240 k~~l~~~~e~~I~~~--k~~~~~~~~~~We~~~~~~~~~ 276 (280)
|++|..|+. ++... .. +...-+.+..-+++|
T Consensus 243 k~~l~~~~~-~~~~~~~~~-----~~~~~e~~~~~i~~i 275 (320)
T 3m3w_A 243 KDVLLTLHQ-HLDLSSSDK-----FHELHRDLQQSIEAA 275 (320)
T ss_dssp HHHHHHHHH-HHCGGGCHH-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHccccchh-----HHHHHHHHHHHHHhc
Confidence 999999986 33322 33 444455555555544
No 23
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=94.36 E-value=2.8 Score=37.79 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 214 QEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 214 ~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
+..|+.--..+...+..++.+|+.-||++|..|+..
T Consensus 217 ~~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~~~~ 252 (337)
T 2x3v_A 217 TPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRH 252 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555566677888899999999999999885
No 24
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=94.13 E-value=3 Score=37.19 Aligned_cols=60 Identities=8% Similarity=0.194 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhhHHHHHHHHHHHHHhhh
Q psy8611 211 ERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQ--QQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 211 ~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~--k~~~~~~~~~~We~~~~~~~~~ 276 (280)
+..+..|+.--..+...+..++.+|+.-||+.|..|+.. +... .. +...-+.+...+.+|
T Consensus 223 n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~-~~~~~~~~-----~~~~~~~l~~~i~~i 284 (312)
T 3abh_A 223 DQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH-LDLSNVAG-----YKAIYHDLEQSIRAA 284 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCGGGSTT-----HHHHHHHHHHHHHTC
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhccch-----HHHHHHHHHHHHHhC
Confidence 444566666556666778899999999999999999987 4332 24 555555566555554
No 25
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=92.81 E-value=5.3 Score=36.02 Aligned_cols=61 Identities=15% Similarity=0.274 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q psy8611 209 KVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQ 274 (280)
Q Consensus 209 ~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~ 274 (280)
+++.++.+|+.=...+-.-++.++.+|+.-+|++|..|....-.+..+ ..+.=|++.-.+.
T Consensus 192 ~le~a~~qWes~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~~~~sd~~~~-----~~~~~E~~~~~ll 252 (287)
T 3g9g_A 192 HLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLN-----TTKECETVMTKFL 252 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 457778899988899999999999999999999999999877776666 5555555554443
No 26
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=91.83 E-value=8.3 Score=36.04 Aligned_cols=50 Identities=16% Similarity=0.186 Sum_probs=32.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q psy8611 222 AMIKREYAGFEASRVQEFKDTMVKYLEELMGYQQQEFKDTMVKYLEELMGYQQQV 276 (280)
Q Consensus 222 ~~ik~Ev~rF~~ek~~dfk~~l~~~~e~~I~~~k~~~~~~~~~~We~~~~~~~~~ 276 (280)
..+..-+..++.+|+.-|+.+|..|+...-..... +....+.+...+.+|
T Consensus 207 p~~~d~lQ~lEe~Ri~~lk~~L~~~~~~~~~~~~~-----~~~~~~~l~~~i~~i 256 (406)
T 4dyl_A 207 PGLLRSLQDLHEEMACILKEILQEYLEISSLVQDE-----VVAIHREMAAAAARI 256 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSHH-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHc
Confidence 34455677899999999999999998754433333 444445555555444
No 27
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=84.75 E-value=20 Score=31.40 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy8611 236 VQEFKDTMVKYLEELMGYQQQ 256 (280)
Q Consensus 236 ~~dfk~~l~~~~e~~I~~~k~ 256 (280)
..-||..+.--....+++-++
T Consensus 159 R~~lKEa~~~~f~Al~E~aEK 179 (234)
T 3plt_A 159 REKLKAAYSYMFDSLRELSEK 179 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888877776
No 28
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=53.82 E-value=1e+02 Score=26.08 Aligned_cols=40 Identities=5% Similarity=-0.016 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALV 59 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~L 59 (280)
-.+.++.++..+++.+..|.+.=+.+...+..+..+...|
T Consensus 53 ~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l 92 (251)
T 2fic_A 53 QFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKL 92 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888999998888877777766666555554433
No 29
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=45.77 E-value=1.5e+02 Score=25.59 Aligned_cols=117 Identities=7% Similarity=0.016 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc----ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhh-
Q psy8611 20 LLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSNT----EEHASVSRVVSTLGELYERTEGVYAAEAGADL- 94 (280)
Q Consensus 20 ~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~~----E~~~~ls~~l~~la~~~~~~~~~~~~~a~~e~- 94 (280)
-++++...|.+|........+.=..++.+..-|-.+|..+|.. -.+..|+.+|-.+++++..+..-+......=.
T Consensus 21 imeqfnP~l~nlv~lg~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S~~skeLG~vL~qis~~hR~i~~~le~~~k~f~~ 100 (222)
T 3ok8_A 21 IMEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEVVVQTFHG 100 (222)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777776666666666666666666677666653 23457999999999999988877554322222
Q ss_pred ---hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 95 ---NILAELFRDYVCLIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKL 142 (280)
Q Consensus 95 ---~~l~~~l~eY~~~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL 142 (280)
.+|...+..=..++.+... +....|......|.|.+.+..|+
T Consensus 101 elI~pLE~k~e~D~k~i~~~~K------~y~~e~k~~~~~leK~~~elkK~ 145 (222)
T 3ok8_A 101 DLLQHMEKNTKLDMQFIKDSCQ------HYEIEYRHRAANLEKCMSELWRM 145 (222)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHh
Confidence 2455555544444443322 22333444444555555554444
No 30
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=35.07 E-value=1.1e+02 Score=21.18 Aligned_cols=42 Identities=7% Similarity=0.198 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy8611 208 HKVERCQEDFAAISAMIKREYAGFEASRVQEFKDTMVKYLEE 249 (280)
Q Consensus 208 ~~~~~~~~~~e~is~~ik~Ev~rF~~ek~~dfk~~l~~~~e~ 249 (280)
.-+.+++..|+.+...-+.|++.|-..|+.++.......-+.
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~ 50 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDA 50 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 445778899999999999999999999999999888877664
No 31
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=32.77 E-value=3.1e+02 Score=25.65 Aligned_cols=13 Identities=8% Similarity=0.099 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q psy8611 103 DYVCLIAAVKDTF 115 (280)
Q Consensus 103 eY~~~i~svK~~l 115 (280)
.|.++..|.+..+
T Consensus 330 ~Y~~f~~aY~~lL 342 (413)
T 4hpq_C 330 FYANFERSYHNLL 342 (413)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555554444
No 32
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.76 E-value=1.6e+02 Score=21.13 Aligned_cols=35 Identities=31% Similarity=0.326 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 107 LIAAVKDTFHARGKIYQTWQSWQIILNKKREAKVKLE 143 (280)
Q Consensus 107 ~i~svK~~l~~R~~~~~~~~~a~~~L~Kkr~~~~kL~ 143 (280)
++.||-|-|.+|.+ .....++++|...+...+-|.
T Consensus 4 llSAVeDKLRrrl~--E~~~q~qaEl~sLrrT~~EL~ 38 (78)
T 3iv1_A 4 LISAVSDKLRWRMK--EEMDRAQAELNALKRTEEDLK 38 (78)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHH
Confidence 56778887777643 333344555554444443343
No 33
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=28.75 E-value=3.2e+02 Score=24.51 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q psy8611 17 KGLLLDSLESQLSHLHSSVEALALARRDLSVYSAHLAKSLALVSN 61 (280)
Q Consensus 17 ~k~~i~~Le~~Lk~l~k~~~~l~k~r~dl~~~~~e~~~s~~~Ls~ 61 (280)
-+..+..+|.++..+.+.+..+.+.=+.+..+..+++.++..+++
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~ 63 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSK 63 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999988999988888888877775
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=27.45 E-value=4.4e+02 Score=25.67 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy8611 107 LIAAVKDTFHAR 118 (280)
Q Consensus 107 ~i~svK~~l~~R 118 (280)
-+.-+|..++..
T Consensus 118 rIqyLKekVdnQ 129 (562)
T 3ghg_A 118 RIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 35
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.67 E-value=37 Score=22.76 Aligned_cols=34 Identities=12% Similarity=0.013 Sum_probs=24.5
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 5 LKQLGGWPVLEDKGLLLDSLESQLSHLHSSVEAL 38 (280)
Q Consensus 5 ~k~~E~D~~F~~~k~~i~~Le~~Lk~l~k~~~~l 38 (280)
|...|.|.|.+.....+..|......|...+..+
T Consensus 20 Y~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 20 YDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888888777777777666544
No 36
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=24.50 E-value=1.3e+02 Score=19.37 Aligned_cols=31 Identities=16% Similarity=0.012 Sum_probs=25.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALALA 41 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~k~ 41 (280)
-+.|......+.+||..|..+.+.++.+..+
T Consensus 6 ~eeF~~L~rRVlqlE~~l~gI~S~idav~~K 36 (45)
T 4gif_A 6 GEEFYMLTRRVLQLETVLEGVVSQIDAVGSK 36 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888889999999998888888877644
No 37
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=23.44 E-value=2.1e+02 Score=20.68 Aligned_cols=28 Identities=7% Similarity=0.080 Sum_probs=17.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 194 RSDICDEQVRVKWEHKVERCQEDFAAIS 221 (280)
Q Consensus 194 ~~~~~~~~~~~~~e~~~~~~~~~~e~is 221 (280)
+.-..|.++|..+..+.+.+......|-
T Consensus 26 ~kvL~RgekL~~L~~kt~~L~~~s~~F~ 53 (91)
T 3hd7_A 26 DKVLERDQKLSELDDRADALQAGASQFE 53 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 4445667777777777766665444443
No 38
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=23.43 E-value=2.1e+02 Score=20.45 Aligned_cols=21 Identities=0% Similarity=0.074 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy8611 205 KWEHKVERCQEDFAAISAMIK 225 (280)
Q Consensus 205 ~~e~~~~~~~~~~e~is~~ik 225 (280)
.++.++..+..+|+.+...+.
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~ 102 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRVASM 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888877664
No 39
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=23.12 E-value=2.9e+02 Score=23.15 Aligned_cols=22 Identities=5% Similarity=-0.020 Sum_probs=11.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q psy8611 97 LAELFRDYVCLIAAVKDTFHAR 118 (280)
Q Consensus 97 l~~~l~eY~~~i~svK~~l~~R 118 (280)
+.+.+.-|..++.++.+.+..+
T Consensus 239 ~~e~~~~~re~l~~l~d~~~s~ 260 (264)
T 3nvo_A 239 GLDEIDACIARTGIMADEIAQV 260 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666655544
No 40
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=22.55 E-value=3.7e+02 Score=28.42 Aligned_cols=19 Identities=11% Similarity=0.062 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy8611 16 DKGLLLDSLESQLSHLHSS 34 (280)
Q Consensus 16 ~~k~~i~~Le~~Lk~l~k~ 34 (280)
+....+..++..|..+...
T Consensus 861 ~L~~eL~el~~~L~~le~~ 879 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAE 879 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433333
No 41
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=22.27 E-value=1.5e+02 Score=18.49 Aligned_cols=29 Identities=17% Similarity=0.041 Sum_probs=23.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 11 WPVLEDKGLLLDSLESQLSHLHSSVEALA 39 (280)
Q Consensus 11 D~~F~~~k~~i~~Le~~Lk~l~k~~~~l~ 39 (280)
-++|......+.+||..|..+.+.++.+.
T Consensus 6 ~eeF~~L~rRVlqlE~~l~gI~S~idav~ 34 (39)
T 3te3_A 6 GEEFYMLTRRVLQLETVLEGVVSQIDAVG 34 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888899999999888888877654
No 42
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=22.17 E-value=1.3e+02 Score=17.77 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy8611 17 KGLLLDSLESQLSHLHSSVEAL 38 (280)
Q Consensus 17 ~k~~i~~Le~~Lk~l~k~~~~l 38 (280)
+..++..+|++|.+|.+.+..|
T Consensus 8 IGaRLnRvE~k~t~MD~kL~~i 29 (31)
T 3hfe_A 8 IGARLNRVEDKVTQLDQRLALI 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888999999999888765
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.50 E-value=2.2e+02 Score=19.82 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8611 15 EDKGLLLDSLESQLSHLHSSVEALALA 41 (280)
Q Consensus 15 ~~~k~~i~~Le~~Lk~l~k~~~~l~k~ 41 (280)
..+..||..||.++..|....+.+...
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l~~e 51 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSSTTLE 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999988888766655433
Done!