RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8611
         (280 letters)



>d1cfza_ c.56.1.1 (A:) Hydrogenase maturating endopeptidase HybD
           {Escherichia coli [TaxId: 562]}
          Length = 162

 Score = 27.1 bits (60), Expect = 1.5
 Identities = 17/126 (13%), Positives = 37/126 (29%), Gaps = 20/126 (15%)

Query: 70  RVVSTLGELYERTEGVYAAEAGADLNILAELFRDYVCLIA--AVKDTFHARGKIYQTWQS 127
           R+V  L + Y   + V   + G     L     +   LI   A+    +A G +      
Sbjct: 21  RIVEALEQRYILPDYVEILDGGTAGMELLGDMANRDHLIIADAIVSKKNAPGTMM----- 75

Query: 128 WQIILNKKREAKVKLELAGRSDKSIQAAHEVTEVRIKYLLKTLFNCCPSDSILIVGTQGR 187
                       ++ E       +  + H++    +   L+          + +VG    
Sbjct: 76  -----------ILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPK--KLTLVGVIPE 122

Query: 188 TVSGGF 193
           ++    
Sbjct: 123 SLEPHI 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.372 

Gapped
Lambda     K      H
   0.267   0.0594    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 982,949
Number of extensions: 42818
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,254,276
Effective search space: 245838096
Effective search space used: 245838096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.1 bits)