BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8613
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 23/135 (17%)
Query: 44 AATNTQIIGRPTALLILDML-----------------GCPCSGIRGQRCAEQGVQIGRIT 86
A N +I+G TA LI +L G +G G+R + +GR+T
Sbjct: 119 AVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRLEGR---VGRVT 175
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHW-SEGLGLFEAIGHSDYFPNGG 145
GLDPA P F+ A+ V L+ DA +VDVIH+D + S G G+ + +GH D+FPNGG
Sbjct: 176 GLDPAEPCFQD--ASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGG 233
Query: 146 LDQPGCEHKKNAVLV 160
PGC+ + +
Sbjct: 234 KQMPGCKRSSFSTFI 248
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 64/117 (54%), Gaps = 16/117 (13%)
Query: 41 IALAATNTQIIGRPTALLILDMLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLA 100
+ +N +IG LG +G G+R IGRITGLDPA P F+
Sbjct: 140 FGYSPSNVHVIGHS--------LGAHAAGEAGRR---TNGTIGRITGLDPAEPCFQG--T 186
Query: 101 TSLVSLNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCEHKKN 156
LV L+ DA +VDVIH+DGA G G+ + +GH D+FPNGG++ PGC KKN
Sbjct: 187 PELVRLDPSDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVEMPGC--KKN 241
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 73.2 bits (178), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 14/113 (12%)
Query: 41 IALAATNTQIIGRPTALLILDMLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLA 100
+ A N IIG LG +G G+R G+ +GRITGLDPA P F+
Sbjct: 141 LNYAPENVHIIGHS--------LGAHTAGEAGKRL--NGL-VGRITGLDPAEPYFQD--T 187
Query: 101 TSLVSLNSGDAHYVDVIHSDGARHW-SEGLGLFEAIGHSDYFPNGGLDQPGCE 152
V L+ DA +VDVIH+D + S G G+ + +GH D+FPNGG D PGC+
Sbjct: 188 PEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGCK 240
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 23/135 (17%)
Query: 44 AATNTQIIGRPTALLILDM-----------------LGCPCSGIRGQRCAEQGVQIGRIT 86
A+ NT+++G A L+ + LG G G+R +GRIT
Sbjct: 119 ASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRLEGH---VGRIT 175
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGG 145
GLDPA P F+ L V L+ DA +VDVIH+D A G G+ + +GH D+FPNGG
Sbjct: 176 GLDPAEPCFQGL--PEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGG 233
Query: 146 LDQPGCEHKKNAVLV 160
+ PGC+ + +V
Sbjct: 234 KEMPGCQKNILSTIV 248
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 58/108 (53%), Gaps = 14/108 (12%)
Query: 46 TNTQIIGRPTALLILDMLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVS 105
+N IIG LG +G G+R +GRITGLDPA P F+ LV
Sbjct: 145 SNVHIIGHS--------LGSHAAGEAGRR---TNGAVGRITGLDPAEPCFQG--TPELVR 191
Query: 106 LNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCE 152
L+ DA +VDVIH+D A G G+ + GH D+FPNGG + PGC+
Sbjct: 192 LDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQ 239
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 59/113 (52%), Gaps = 14/113 (12%)
Query: 41 IALAATNTQIIGRPTALLILDMLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLA 100
+ + +N +IG LG +G G+R I RITGLDPA P F+
Sbjct: 140 LGYSPSNVHVIGHS--------LGSHAAGEAGRR---TNGTIERITGLDPAEPCFQG--T 186
Query: 101 TSLVSLNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCE 152
LV L+ DA +VDVIH+D A G G+ + +GH D+FPNGG PGC+
Sbjct: 187 PELVRLDPSDAKFVDVIHTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQMPGCQ 239
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 55/102 (53%), Gaps = 9/102 (8%)
Query: 58 LILDMLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVI 117
LI LG +G G R +GRITGLDP F+ V L+ DA +VDVI
Sbjct: 150 LIGHSLGAHVAGEAGSRTP----GLGRITGLDPVEASFQG--TPEEVRLDPTDADFVDVI 203
Query: 118 HSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCEHKKNAV 158
H+D A G G + +GH D+FPNGG + PGC KKNA+
Sbjct: 204 HTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGC--KKNAL 243
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 85 ITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHW-SEGLGLFEAIGHSDYFPN 143
ITGLDPA P F+ V L+ DA +VDVIH+D + S G G+ + +GH D+FPN
Sbjct: 174 ITGLDPAGPCFQD--EPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPN 231
Query: 144 GGLDQPGCEHKKNAV 158
GG + PGC KKN +
Sbjct: 232 GGKEMPGC--KKNVL 244
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 47/75 (62%), Gaps = 5/75 (6%)
Query: 85 ITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHW-SEGLGLFEAIGHSDYFPN 143
ITGLDPA P F+ V L+ DA +VDVIH+D + S G G+ + +GH D+FPN
Sbjct: 176 ITGLDPAGPCFQD--EPEEVRLDPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPN 233
Query: 144 GGLDQPGCEHKKNAV 158
GG + PGC KKN +
Sbjct: 234 GGKEMPGC--KKNVL 246
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 58 LILDMLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVI 117
LI LG +G G + + RITGLDP F V L+ DA +VDVI
Sbjct: 175 LIGHSLGAHVAGEAGSKTP----GLSRITGLDPVEASFES--TPEEVRLDPSDADFVDVI 228
Query: 118 HSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCEHKKNAV 158
H+D A G G + +GH D+FPNGG PGC KKNA+
Sbjct: 229 HTDAAPLIPFLGFGTNQQMGHLDFFPNGGESMPGC--KKNAL 268
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 30.0 bits (66), Expect = 0.80, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 113 YVDVIHSDGARHWSEGLGLFEAIGHSDYF 141
Y+D SDG W+ LG E I SD F
Sbjct: 101 YIDNWSSDGFLRWAHALGFIEYINKSDSF 129
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 576
Score = 30.0 bits (66), Expect = 0.80, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 113 YVDVIHSDGARHWSEGLGLFEAIGHSDYF 141
Y+D SDG W+ LG E I SD F
Sbjct: 98 YIDNWSSDGFLRWAHALGFIEYINKSDSF 126
>pdb|1VP5|A Chain A, Crystal Structure Of 2,5-diketo-d-gluconic Acid Reductase
(tm1009) From Thermotoga Maritima At 2.40 A Resolution
pdb|1VP5|B Chain B, Crystal Structure Of 2,5-diketo-d-gluconic Acid Reductase
(tm1009) From Thermotoga Maritima At 2.40 A Resolution
Length = 298
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 130 GLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEKTPQMQRQSAVE 176
GL AIG S+++P+ +D H + V+ +E P QRQ +E
Sbjct: 144 GLVRAIGVSNFYPDRLMDL--MVHHEIVPAVNQIEIHPFYQRQEEIE 188
>pdb|3MRU|A Chain A, Crystal Structure Of Aminoacylhistidine Dipeptidase From
Vibrio Alginolyticus
pdb|3MRU|B Chain B, Crystal Structure Of Aminoacylhistidine Dipeptidase From
Vibrio Alginolyticus
Length = 490
Score = 26.9 bits (58), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 149 PGCEHKKNAVLVSHLEKTPQMQRQS 173
PG E+KK VL +H++ PQ +
Sbjct: 67 PGMENKKGVVLQAHIDMVPQKNEDT 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,003,303
Number of Sequences: 62578
Number of extensions: 245057
Number of successful extensions: 380
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 14
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)