Query psy8613
Match_columns 191
No_of_seqs 146 out of 835
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 23:17:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00151 Lipase: Lipase; Inte 100.0 1.3E-53 2.7E-58 379.4 2.5 151 1-155 76-248 (331)
2 TIGR03230 lipo_lipase lipoprot 100.0 6.1E-44 1.3E-48 327.8 10.7 148 1-154 46-214 (442)
3 cd00707 Pancreat_lipase_like P 100.0 1.9E-42 4.1E-47 299.2 10.5 156 1-167 41-218 (275)
4 cd00741 Lipase Lipase. Lipase 98.3 3.1E-06 6.7E-11 66.3 8.0 116 61-180 35-152 (153)
5 PRK00870 haloalkane dehalogena 88.9 0.55 1.2E-05 40.0 4.0 85 1-94 51-152 (302)
6 PRK11126 2-succinyl-6-hydroxy- 82.6 3.1 6.7E-05 33.6 5.3 82 1-91 7-101 (242)
7 PF12697 Abhydrolase_6: Alpha/ 81.3 2 4.4E-05 32.8 3.6 88 1-93 3-102 (228)
8 PRK10349 carboxylesterase BioH 77.6 1.4 3E-05 36.3 1.6 84 1-91 18-108 (256)
9 smart00037 CNX Connexin homolo 75.1 1.6 3.6E-05 26.9 1.1 14 139-154 9-22 (34)
10 PLN02824 hydrolase, alpha/beta 72.8 5.7 0.00012 33.4 4.3 87 1-93 34-138 (294)
11 PLN02965 Probable pheophorbida 71.4 8.3 0.00018 31.9 4.9 83 1-92 8-107 (255)
12 PRK03204 haloalkane dehalogena 71.0 6 0.00013 33.7 4.0 80 1-92 39-136 (286)
13 TIGR03611 RutD pyrimidine util 68.3 4.6 9.9E-05 32.0 2.6 67 23-92 38-115 (257)
14 PLN02578 hydrolase 67.4 7.9 0.00017 34.2 4.1 67 23-93 111-188 (354)
15 TIGR03695 menH_SHCHC 2-succiny 65.4 15 0.00032 28.4 4.9 84 1-91 6-104 (251)
16 PLN02298 hydrolase, alpha/beta 64.6 11 0.00023 32.5 4.4 89 1-92 64-169 (330)
17 PLN02894 hydrolase, alpha/beta 61.0 9.2 0.0002 34.8 3.4 29 62-93 184-212 (402)
18 PRK14875 acetoin dehydrogenase 60.3 15 0.00031 31.8 4.4 69 19-92 153-232 (371)
19 PRK10673 acyl-CoA esterase; Pr 58.7 10 0.00023 30.6 3.1 64 23-91 41-115 (255)
20 TIGR01250 pro_imino_pep_2 prol 58.5 14 0.00031 29.5 3.8 87 1-92 30-131 (288)
21 PLN03084 alpha/beta hydrolase 55.7 15 0.00032 33.6 3.8 90 1-93 132-233 (383)
22 PLN00021 chlorophyllase 54.8 45 0.00098 29.5 6.7 90 1-92 57-166 (313)
23 PLN02679 hydrolase, alpha/beta 54.1 16 0.00035 32.4 3.8 83 1-93 93-192 (360)
24 PLN02385 hydrolase; alpha/beta 53.4 20 0.00044 31.3 4.2 88 1-92 92-197 (349)
25 TIGR03343 biphenyl_bphD 2-hydr 51.9 21 0.00045 29.4 3.8 70 20-92 56-136 (282)
26 TIGR01738 bioH putative pimelo 48.9 13 0.00029 28.8 2.1 83 1-92 9-100 (245)
27 TIGR03056 bchO_mg_che_rel puta 47.0 32 0.00069 27.8 4.2 61 24-92 54-130 (278)
28 PLN02211 methyl indole-3-aceta 43.5 42 0.00091 28.5 4.5 85 1-92 23-122 (273)
29 TIGR02427 protocat_pcaD 3-oxoa 42.0 19 0.00041 28.0 2.0 65 19-92 35-114 (251)
30 PF01674 Lipase_2: Lipase (cla 39.3 15 0.00033 31.2 1.2 58 1-61 6-68 (219)
31 cd04479 RPA3 RPA3: A subfamily 38.3 47 0.001 24.6 3.5 24 64-91 7-30 (101)
32 PRK03592 haloalkane dehalogena 38.3 37 0.0008 28.5 3.4 79 1-90 32-126 (295)
33 PRK10749 lysophospholipase L2; 32.6 56 0.0012 28.4 3.7 28 62-92 139-166 (330)
34 PRK10162 acetyl esterase; Prov 31.2 36 0.00079 29.7 2.2 61 15-76 103-176 (318)
35 TIGR03101 hydr2_PEP hydrolase, 28.3 1.3E+02 0.0029 26.0 5.2 72 19-93 51-135 (266)
36 PRK03922 hypothetical protein; 28.2 33 0.00071 26.6 1.2 16 101-116 30-45 (113)
37 TIGR02240 PHA_depoly_arom poly 27.7 57 0.0012 27.1 2.8 65 19-92 47-126 (276)
38 PF08661 Rep_fac-A_3: Replicat 27.4 1.1E+02 0.0023 22.8 3.9 45 64-121 10-54 (109)
39 PF00975 Thioesterase: Thioest 24.5 25 0.00054 28.2 -0.0 34 62-95 74-107 (229)
40 PF07859 Abhydrolase_3: alpha/ 24.2 77 0.0017 25.0 2.8 76 15-91 20-109 (211)
41 TIGR01249 pro_imino_pep_1 prol 23.8 1.1E+02 0.0024 26.1 3.9 34 1-36 32-65 (306)
42 TIGR01836 PHA_synth_III_C poly 22.4 72 0.0016 27.9 2.5 21 14-35 85-105 (350)
43 PF00561 Abhydrolase_1: alpha/ 21.7 76 0.0017 24.5 2.3 64 25-91 1-78 (230)
44 COG0031 CysK Cysteine synthase 20.9 44 0.00095 30.0 0.8 31 64-96 180-211 (300)
45 PF06057 VirJ: Bacterial virul 20.7 89 0.0019 26.3 2.6 70 18-93 23-108 (192)
46 COG3581 Uncharacterized protei 20.0 96 0.0021 29.2 2.8 33 5-37 339-377 (420)
No 1
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=100.00 E-value=1.3e-53 Score=379.36 Aligned_cols=151 Identities=34% Similarity=0.542 Sum_probs=115.7
Q ss_pred CCCCCCCCCC---ChHHHHHHhCCC--CCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhhcc-------------
Q psy8613 1 MVNNLAPFGC---NKILFQTCYSPQ--EDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLILDM------------- 62 (191)
Q Consensus 1 ~~~~~~~~~~---~~~~i~~ayl~~--~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~~l------------- 62 (191)
+||||..-+- ....|+++|+++ +|+|||+|||+.+| ...|.+|+.|++.||+.||+||..|
T Consensus 76 iiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a-~~~Y~~a~~n~~~vg~~la~~l~~L~~~~g~~~~~ihl 154 (331)
T PF00151_consen 76 IIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGA-SNNYPQAVANTRLVGRQLAKFLSFLINNFGVPPENIHL 154 (331)
T ss_dssp EE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHH-SS-HHHHHHHHHHHHHHHHHHHHHHHHHH---GGGEEE
T ss_pred EEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhc-cccccchhhhHHHHHHHHHHHHHHHHhhcCCChhHEEE
Confidence 4899999883 333467899999 99999999999999 6789999999999999999998754
Q ss_pred ----ccchhhhhccccccccCceeeeeeecCCCCccccccccccccccCCCCCCcEEEEecCCCCccccCCcccccccce
Q psy8613 63 ----LGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHS 138 (191)
Q Consensus 63 ----lGAHiaG~ag~~~~~~~~~l~RITgLDPAgP~F~~~~~~~~~rLd~~DA~fVdVIHT~~~~~~~~~~G~~~~~Gh~ 138 (191)
|||||||+|||+++. +.||+||||||||+|+|+.. ++..|||++||+||||||||++.+...++|+.+|+||+
T Consensus 155 IGhSLGAHvaG~aG~~~~~-~~ki~rItgLDPAgP~F~~~--~~~~rL~~~DA~fVdvIHT~~~~~~~~~~G~~~~~Gh~ 231 (331)
T PF00151_consen 155 IGHSLGAHVAGFAGKYLKG-GGKIGRITGLDPAGPLFENN--PPSERLDKSDAKFVDVIHTNAGTLPGGGLGTSEPIGHV 231 (331)
T ss_dssp EEETCHHHHHHHHHHHTTT----SSEEEEES-B-TTTTTS---TTTS--GGGSSEEEEE-SSES-HHH-SSBESS--SSE
T ss_pred EeeccchhhhhhhhhhccC-cceeeEEEecCcccccccCC--ChhHhhhccCCceEEEEEcCCccccCCccccccccccc
Confidence 599999999999987 78999999999999999976 56789999999999999999844333479999999999
Q ss_pred eEEcCCCCCCCCCCCCC
Q psy8613 139 DYFPNGGLDQPGCEHKK 155 (191)
Q Consensus 139 DFypNGG~~QPGC~~~~ 155 (191)
|||||||..||||....
T Consensus 232 DFYpNgG~~QPGC~~~~ 248 (331)
T PF00151_consen 232 DFYPNGGRRQPGCGNDS 248 (331)
T ss_dssp EEEETTTTS-TTSSS-C
T ss_pred eeecCCCccCCCCcccc
Confidence 99999999999999753
No 2
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=100.00 E-value=6.1e-44 Score=327.77 Aligned_cols=148 Identities=28% Similarity=0.462 Sum_probs=125.7
Q ss_pred CCCCCCCCCCChHH---HHHHhCCC-CCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhhcc--------------
Q psy8613 1 MVNNLAPFGCNKIL---FQTCYSPQ-EDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLILDM-------------- 62 (191)
Q Consensus 1 ~~~~~~~~~~~~~~---i~~ayl~~-~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~~l-------------- 62 (191)
+|||+..-+....| |+++++.+ +++|||+|||...+ ...|.+++.|++.||+.++++|..|
T Consensus 46 lIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g-~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l~~VhLI 124 (442)
T TIGR03230 46 VIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRA-QQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPWDNVHLL 124 (442)
T ss_pred EECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcC-CCCCccccccHHHHHHHHHHHHHHHHHhhCCCCCcEEEE
Confidence 48999875543333 56777654 58999999999988 6789999999999999999988743
Q ss_pred ---ccchhhhhccccccccCceeeeeeecCCCCccccccccccccccCCCCCCcEEEEecCCCCccccCCccccccccee
Q psy8613 63 ---LGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSD 139 (191)
Q Consensus 63 ---lGAHiaG~ag~~~~~~~~~l~RITgLDPAgP~F~~~~~~~~~rLd~~DA~fVdVIHT~~~~~~~~~~G~~~~~Gh~D 139 (191)
|||||||++|++.. .+|+||||||||+|+|+.. ++..|||++||+||||||||++.....++|+.+|+||+|
T Consensus 125 GHSLGAhIAg~ag~~~p---~rV~rItgLDPAgP~F~~~--~~~~rLd~~DA~fVdVIHTd~~~~~~~~lG~~~piGh~D 199 (442)
T TIGR03230 125 GYSLGAHVAGIAGSLTK---HKVNRITGLDPAGPTFEYA--DAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHID 199 (442)
T ss_pred EECHHHHHHHHHHHhCC---cceeEEEEEcCCCCccccc--ccccccCCCCCCeEEEEEecCCccccccccccccccceE
Confidence 49999999998774 5899999999999999976 678999999999999999998533334699999999999
Q ss_pred EEcCCCCCCCCCCCC
Q psy8613 140 YFPNGGLDQPGCEHK 154 (191)
Q Consensus 140 FypNGG~~QPGC~~~ 154 (191)
||||||..||||...
T Consensus 200 FYPNGG~~QPGC~~~ 214 (442)
T TIGR03230 200 IYPNGGTFQPGCDIQ 214 (442)
T ss_pred eccCCCCCCCCCCcc
Confidence 999999999999753
No 3
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=100.00 E-value=1.9e-42 Score=299.20 Aligned_cols=156 Identities=35% Similarity=0.582 Sum_probs=132.4
Q ss_pred CCCCCCCCCCC--hHHHHHHhCCCCCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhhcc----------------
Q psy8613 1 MVNNLAPFGCN--KILFQTCYSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLILDM---------------- 62 (191)
Q Consensus 1 ~~~~~~~~~~~--~~~i~~ayl~~~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~~l---------------- 62 (191)
+|||+..-... ...++++|++.+++|||+|||...+ ...|..++.+++.+|+.++++|..+
T Consensus 41 lIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~-~~~y~~a~~~~~~v~~~la~~l~~L~~~~g~~~~~i~lIGh 119 (275)
T cd00707 41 IIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGA-NPNYPQAVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGH 119 (275)
T ss_pred EEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECcccc-ccChHHHHHhHHHHHHHHHHHHHHHHHhcCCChHHEEEEEe
Confidence 48998754312 2346788999999999999999886 7889999999999999999987643
Q ss_pred -ccchhhhhccccccccCceeeeeeecCCCCccccccccccccccCCCCCCcEEEEecCCCCccccCCcccccccceeEE
Q psy8613 63 -LGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYF 141 (191)
Q Consensus 63 -lGAHiaG~ag~~~~~~~~~l~RITgLDPAgP~F~~~~~~~~~rLd~~DA~fVdVIHT~~~~~~~~~~G~~~~~Gh~DFy 141 (191)
+||||||++|+++. .+|+||++||||+|+|+.. ++..|||++||+||||||||++ .+|+..|+||+|||
T Consensus 120 SlGa~vAg~~a~~~~---~~v~~iv~LDPa~p~f~~~--~~~~rl~~~dA~~V~vihT~~~-----~~G~~~~~gh~dfy 189 (275)
T cd00707 120 SLGAHVAGFAGKRLN---GKLGRITGLDPAGPLFSGA--DPEDRLDPSDAQFVDVIHTDGG-----LLGFSQPIGHADFY 189 (275)
T ss_pred cHHHHHHHHHHHHhc---CccceeEEecCCcccccCC--CcccccCCCCCCeEEEEEeCCC-----CCCccccccceEec
Confidence 49999999999886 3899999999999999875 5678999999999999999986 58999999999999
Q ss_pred cCCCCCCCCCCCCC---ccceeccccccc
Q psy8613 142 PNGGLDQPGCEHKK---NAVLVSHLEKTP 167 (191)
Q Consensus 142 pNGG~~QPGC~~~~---~~~~csh~~~~~ 167 (191)
||||..||||.... ....|||.|+..
T Consensus 190 pngg~~QpgC~~~~~~~~~~~CsH~ra~~ 218 (275)
T cd00707 190 PNGGRDQPGCPKDILSSDFVACSHQRAVH 218 (275)
T ss_pred cCCCCCCCCCCCccccccccccchHHHHH
Confidence 99999999998642 235677776553
No 4
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.31 E-value=3.1e-06 Score=66.34 Aligned_cols=116 Identities=21% Similarity=0.229 Sum_probs=77.3
Q ss_pred ccccchhhhhccccccc-cCceeeeeeecCCCCccccccccccccccCCCCCCcEEEEecCCCCccccCC-cccccccce
Q psy8613 61 DMLGCPCSGIRGQRCAE-QGVQIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSEGL-GLFEAIGHS 138 (191)
Q Consensus 61 ~llGAHiaG~ag~~~~~-~~~~l~RITgLDPAgP~F~~~~~~~~~rLd~~DA~fVdVIHT~~~~~~~~~~-G~~~~~Gh~ 138 (191)
++|||++|.+++..++. .+.++.++++++|+.+..... ...++...++.+|..||++......... ......+..
T Consensus 35 HSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~~~~~~---~~~~~~~~~~~~~~~i~~~~D~v~~~p~~~~~~~~~~~ 111 (153)
T cd00741 35 HSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVGNAAF---AEDRLDPSDALFVDRIVNDNDIVPRLPPGGEGYPHGGA 111 (153)
T ss_pred cCHHHHHHHHHHHHHHhccCCCceEEEEeCCCcccchHH---HHHhhhccCCccEEEEEECCCccCCCCCCcCCCeecce
Confidence 45799999999998865 245789999999999987642 1146788899999999999754321111 222567889
Q ss_pred eEEcCCCCCCCCCCCCCccceecccccccccCcccccccccc
Q psy8613 139 DYFPNGGLDQPGCEHKKNAVLVSHLEKTPQMQRQSAVEHYSW 180 (191)
Q Consensus 139 DFypNGG~~QPGC~~~~~~~~csh~~~~~~~~~~~~CsH~~~ 180 (191)
+||+|++..++.|....... +..............|+|..+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~dH~~y 152 (153)
T cd00741 112 EFYINGGKSQPGCCKNVLEA-VDIDFGNIGLSGNGLCDHLRY 152 (153)
T ss_pred EEEECCCCCCCcccccceee-ccccccccCcCCcCHHHhhcc
Confidence 99999999877776432110 011111223345666888643
No 5
>PRK00870 haloalkane dehalogenase; Provisional
Probab=88.94 E-value=0.55 Score=40.03 Aligned_cols=85 Identities=5% Similarity=-0.230 Sum_probs=46.6
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCCCC------CCHHHHHhhhHHHHHHHHHhhh-----------ccc
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPD------LPIALAATNTQIIGRPTALLIL-----------DML 63 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a~~------~~Y~~a~~nt~~VG~~la~~l~-----------~ll 63 (191)
+|||+. -......-.-.+|...+++|+++|+.....+ ..|. .....+.+..+|. +++
T Consensus 51 liHG~~-~~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~~~~~~~-----~~~~a~~l~~~l~~l~~~~v~lvGhS~ 124 (302)
T PRK00870 51 LLHGEP-SWSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPTRREDYT-----YARHVEWMRSWFEQLDLTDVTLVCQDW 124 (302)
T ss_pred EECCCC-CchhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCCCcccCC-----HHHHHHHHHHHHHHcCCCCEEEEEECh
Confidence 578973 2222222222345555799999999654322 1131 1223333444433 335
Q ss_pred cchhhhhccccccccCceeeeeeecCCCCcc
Q psy8613 64 GCPCSGIRGQRCAEQGVQIGRITGLDPASPL 94 (191)
Q Consensus 64 GAHiaG~ag~~~~~~~~~l~RITgLDPAgP~ 94 (191)
|+.+|...+... ..++.+++-++|+.|.
T Consensus 125 Gg~ia~~~a~~~---p~~v~~lvl~~~~~~~ 152 (302)
T PRK00870 125 GGLIGLRLAAEH---PDRFARLVVANTGLPT 152 (302)
T ss_pred HHHHHHHHHHhC---hhheeEEEEeCCCCCC
Confidence 777776665544 3479999999986543
No 6
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=82.57 E-value=3.1 Score=33.57 Aligned_cols=82 Identities=11% Similarity=-0.064 Sum_probs=46.5
Q ss_pred CCCCCCCCCCChHH--HHHHhCCCCCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhhc-----------cccchh
Q psy8613 1 MVNNLAPFGCNKIL--FQTCYSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLILD-----------MLGCPC 67 (191)
Q Consensus 1 ~~~~~~~~~~~~~~--i~~ayl~~~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~~-----------llGAHi 67 (191)
+|||+..=. ..| +.+ .+ .+++||++||.....+.... ..+.....+.+.++|.. ++||.+
T Consensus 7 llHG~~~~~--~~w~~~~~-~l--~~~~vi~~D~~G~G~S~~~~--~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~v 79 (242)
T PRK11126 7 FLHGLLGSG--QDWQPVGE-AL--PDYPRLYIDLPGHGGSAAIS--VDGFADVSRLLSQTLQSYNILPYWLVGYSLGGRI 79 (242)
T ss_pred EECCCCCCh--HHHHHHHH-Hc--CCCCEEEecCCCCCCCCCcc--ccCHHHHHHHHHHHHHHcCCCCeEEEEECHHHHH
Confidence 578874322 222 233 33 36999999997554222211 12445556666666643 347777
Q ss_pred hhhccccccccCceeeeeeecCCC
Q psy8613 68 SGIRGQRCAEQGVQIGRITGLDPA 91 (191)
Q Consensus 68 aG~ag~~~~~~~~~l~RITgLDPA 91 (191)
|-.++.+... .++.+|+-++|.
T Consensus 80 a~~~a~~~~~--~~v~~lvl~~~~ 101 (242)
T PRK11126 80 AMYYACQGLA--GGLCGLIVEGGN 101 (242)
T ss_pred HHHHHHhCCc--ccccEEEEeCCC
Confidence 7776555421 248888866654
No 7
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=81.31 E-value=2 Score=32.81 Aligned_cols=88 Identities=10% Similarity=-0.013 Sum_probs=49.0
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCCCCCCHHH-HHhhhHHHHHHHHHhhhc-----------cccchhh
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPDLPIAL-AATNTQIIGRPTALLILD-----------MLGCPCS 68 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a~~~~Y~~-a~~nt~~VG~~la~~l~~-----------llGAHia 68 (191)
+|||+.--.-.-..+.+.+ . ++++|+++|+.....+..... .....+.....+..+|.. ++|+.++
T Consensus 3 ~~hG~~~~~~~~~~~~~~l-~-~~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a 80 (228)
T PF12697_consen 3 FLHGFGGSSESWDPLAEAL-A-RGYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMIA 80 (228)
T ss_dssp EE-STTTTGGGGHHHHHHH-H-TTSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH-h-CCCEEEEEecCCccccccccccCCcchhhhhhhhhhcccccccccccccccccccccc
Confidence 3677643332222244544 4 699999999976542221110 111223333444444432 3488888
Q ss_pred hhccccccccCceeeeeeecCCCCc
Q psy8613 69 GIRGQRCAEQGVQIGRITGLDPASP 93 (191)
Q Consensus 69 G~ag~~~~~~~~~l~RITgLDPAgP 93 (191)
-....... .++.+++.++|..+
T Consensus 81 ~~~a~~~p---~~v~~~vl~~~~~~ 102 (228)
T PF12697_consen 81 LRLAARYP---DRVKGLVLLSPPPP 102 (228)
T ss_dssp HHHHHHSG---GGEEEEEEESESSS
T ss_pred cccccccc---cccccceeeccccc
Confidence 77766543 37999999999984
No 8
>PRK10349 carboxylesterase BioH; Provisional
Probab=77.62 E-value=1.4 Score=36.32 Aligned_cols=84 Identities=5% Similarity=-0.130 Sum_probs=43.6
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhh-------ccccchhhhhccc
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLIL-------DMLGCPCSGIRGQ 73 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~-------~llGAHiaG~ag~ 73 (191)
+|||+ +.++..+.-.-..|. ..+.|+++|+.....+..+. ..+...+...+.++.. +++||.||-..+.
T Consensus 18 llHG~-~~~~~~w~~~~~~L~-~~~~vi~~Dl~G~G~S~~~~--~~~~~~~~~~l~~~~~~~~~lvGhS~Gg~ia~~~a~ 93 (256)
T PRK10349 18 LLHGW-GLNAEVWRCIDEELS-SHFTLHLVDLPGFGRSRGFG--ALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIAL 93 (256)
T ss_pred EECCC-CCChhHHHHHHHHHh-cCCEEEEecCCCCCCCCCCC--CCCHHHHHHHHHhcCCCCeEEEEECHHHHHHHHHHH
Confidence 58886 222333322233444 35999999997654332221 0111222222322221 2347776665554
Q ss_pred cccccCceeeeeeecCCC
Q psy8613 74 RCAEQGVQIGRITGLDPA 91 (191)
Q Consensus 74 ~~~~~~~~l~RITgLDPA 91 (191)
.. ..++.+++-+||+
T Consensus 94 ~~---p~~v~~lili~~~ 108 (256)
T PRK10349 94 TH---PERVQALVTVASS 108 (256)
T ss_pred hC---hHhhheEEEecCc
Confidence 33 3578999999985
No 9
>smart00037 CNX Connexin homologues. Connexin channels participate in the regulation of signaling between developing and differentiated cell types.
Probab=75.07 E-value=1.6 Score=26.86 Aligned_cols=14 Identities=50% Similarity=0.992 Sum_probs=9.7
Q ss_pred eEEcCCCCCCCCCCCC
Q psy8613 139 DYFPNGGLDQPGCEHK 154 (191)
Q Consensus 139 DFypNGG~~QPGC~~~ 154 (191)
||-=| ..||||.+.
T Consensus 9 ~FvCn--T~QPGC~nv 22 (34)
T smart00037 9 DFVCN--TQQPGCENV 22 (34)
T ss_pred hceec--CCCCCccce
Confidence 44444 679999864
No 10
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=72.76 E-value=5.7 Score=33.45 Aligned_cols=87 Identities=6% Similarity=-0.108 Sum_probs=47.8
Q ss_pred CCCCCCCCCCChHH-HHHHhCCCCCceEEEEcCCCCCCCCCHH------HHHhhhHHHHHHHHHhhhc-----------c
Q psy8613 1 MVNNLAPFGCNKIL-FQTCYSPQEDAKRDPSRLEKGLPDLPIA------LAATNTQIIGRPTALLILD-----------M 62 (191)
Q Consensus 1 ~~~~~~~~~~~~~~-i~~ayl~~~d~NVi~VDW~~~a~~~~Y~------~a~~nt~~VG~~la~~l~~-----------l 62 (191)
++||+.- ++.... +...+ . .++.||++|+-....+..-. ...-+.+.....+..+|.. +
T Consensus 34 llHG~~~-~~~~w~~~~~~L-~-~~~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS 110 (294)
T PLN02824 34 LVHGFGG-NADHWRKNTPVL-A-KSHRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDVVGDPAFVICNS 110 (294)
T ss_pred EECCCCC-ChhHHHHHHHHH-H-hCCeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHhcCCCeEEEEeC
Confidence 4788632 233322 23333 3 35799999997555222100 1123445555666666643 2
Q ss_pred ccchhhhhccccccccCceeeeeeecCCCCc
Q psy8613 63 LGCPCSGIRGQRCAEQGVQIGRITGLDPASP 93 (191)
Q Consensus 63 lGAHiaG~ag~~~~~~~~~l~RITgLDPAgP 93 (191)
+|+.||-..+.+. ..++.+++-++|+.+
T Consensus 111 ~Gg~va~~~a~~~---p~~v~~lili~~~~~ 138 (294)
T PLN02824 111 VGGVVGLQAAVDA---PELVRGVMLINISLR 138 (294)
T ss_pred HHHHHHHHHHHhC---hhheeEEEEECCCcc
Confidence 3666665554443 347999999998753
No 11
>PLN02965 Probable pheophorbidase
Probab=71.39 E-value=8.3 Score=31.88 Aligned_cols=83 Identities=12% Similarity=-0.031 Sum_probs=44.7
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCCCC-----CCHHHHHhhhHHHHHHHHHhhh------------ccc
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPD-----LPIALAATNTQIIGRPTALLIL------------DML 63 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a~~-----~~Y~~a~~nt~~VG~~la~~l~------------~ll 63 (191)
+|||+. .+...+.-.-..|...++.||++|+.....+ ..|. .......+..+|. +++
T Consensus 8 llHG~~-~~~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~~~~~~-----~~~~a~dl~~~l~~l~~~~~~~lvGhSm 81 (255)
T PLN02965 8 FVHGAS-HGAWCWYKLATLLDAAGFKSTCVDLTGAGISLTDSNTVSS-----SDQYNRPLFALLSDLPPDHKVILVGHSI 81 (255)
T ss_pred EECCCC-CCcCcHHHHHHHHhhCCceEEEecCCcCCCCCCCccccCC-----HHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence 578875 3343333333445455699999999443311 1122 1122222332222 345
Q ss_pred cchhhhhccccccccCceeeeeeecCCCC
Q psy8613 64 GCPCSGIRGQRCAEQGVQIGRITGLDPAS 92 (191)
Q Consensus 64 GAHiaG~ag~~~~~~~~~l~RITgLDPAg 92 (191)
|+-|+-.++.+. ..+|.+++-++++.
T Consensus 82 GG~ia~~~a~~~---p~~v~~lvl~~~~~ 107 (255)
T PLN02965 82 GGGSVTEALCKF---TDKISMAIYVAAAM 107 (255)
T ss_pred chHHHHHHHHhC---chheeEEEEEcccc
Confidence 777666665544 34788888888874
No 12
>PRK03204 haloalkane dehalogenase; Provisional
Probab=71.00 E-value=6 Score=33.72 Aligned_cols=80 Identities=6% Similarity=-0.193 Sum_probs=42.1
Q ss_pred CCCCCCCCCCChH-H-HHHHhCCCCCceEEEEcCCCCCCCC-----CHHHHHhhhHHHHHHHHHhhh-----------cc
Q psy8613 1 MVNNLAPFGCNKI-L-FQTCYSPQEDAKRDPSRLEKGLPDL-----PIALAATNTQIIGRPTALLIL-----------DM 62 (191)
Q Consensus 1 ~~~~~~~~~~~~~-~-i~~ayl~~~d~NVi~VDW~~~a~~~-----~Y~~a~~nt~~VG~~la~~l~-----------~l 62 (191)
+|||+. +... | -.-.+|.. +++||++|+.....+. .|. .......+..++. ++
T Consensus 39 ~lHG~~---~~~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~lvG~S 109 (286)
T PRK03204 39 LCHGNP---TWSFLYRDIIVALRD-RFRCVAPDYLGFGLSERPSGFGYQ-----IDEHARVIGEFVDHLGLDRYLSMGQD 109 (286)
T ss_pred EECCCC---ccHHHHHHHHHHHhC-CcEEEEECCCCCCCCCCCCccccC-----HHHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 478974 3322 2 22234443 4999999997543211 231 1222233333322 34
Q ss_pred ccchhhhhccccccccCceeeeeeecCCCC
Q psy8613 63 LGCPCSGIRGQRCAEQGVQIGRITGLDPAS 92 (191)
Q Consensus 63 lGAHiaG~ag~~~~~~~~~l~RITgLDPAg 92 (191)
+|+.||-..+.... .++.++.-++|..
T Consensus 110 ~Gg~va~~~a~~~p---~~v~~lvl~~~~~ 136 (286)
T PRK03204 110 WGGPISMAVAVERA---DRVRGVVLGNTWF 136 (286)
T ss_pred ccHHHHHHHHHhCh---hheeEEEEECccc
Confidence 58888765554432 4788888777653
No 13
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=68.32 E-value=4.6 Score=32.02 Aligned_cols=67 Identities=7% Similarity=-0.130 Sum_probs=34.7
Q ss_pred CCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhh-----------ccccchhhhhccccccccCceeeeeeecCCC
Q psy8613 23 EDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLIL-----------DMLGCPCSGIRGQRCAEQGVQIGRITGLDPA 91 (191)
Q Consensus 23 ~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~-----------~llGAHiaG~ag~~~~~~~~~l~RITgLDPA 91 (191)
.+++||++|......+..-....-+.....+.+.+++. +++|+.+|-..+.... .++.++..++|.
T Consensus 38 ~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~~~---~~v~~~i~~~~~ 114 (257)
T TIGR03611 38 QRFHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDALNIERFHFVGHALGGLIGLQLALRYP---ERLLSLVLINAW 114 (257)
T ss_pred hccEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHHCh---HHhHHheeecCC
Confidence 46999999986433111000000012222233333332 3458888877665443 367788877765
Q ss_pred C
Q psy8613 92 S 92 (191)
Q Consensus 92 g 92 (191)
.
T Consensus 115 ~ 115 (257)
T TIGR03611 115 S 115 (257)
T ss_pred C
Confidence 4
No 14
>PLN02578 hydrolase
Probab=67.41 E-value=7.9 Score=34.18 Aligned_cols=67 Identities=13% Similarity=-0.056 Sum_probs=38.1
Q ss_pred CCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhhc-----------cccchhhhhccccccccCceeeeeeecCCC
Q psy8613 23 EDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLILD-----------MLGCPCSGIRGQRCAEQGVQIGRITGLDPA 91 (191)
Q Consensus 23 ~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~~-----------llGAHiaG~ag~~~~~~~~~l~RITgLDPA 91 (191)
..+.|+.+|+.....+. -....-.....++.+..++.+ ++|+.||-.++.+.. .++.+++-++|+
T Consensus 111 ~~~~v~~~D~~G~G~S~-~~~~~~~~~~~a~~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p---~~v~~lvLv~~~ 186 (354)
T PLN02578 111 KKYKVYALDLLGFGWSD-KALIEYDAMVWRDQVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYP---ELVAGVALLNSA 186 (354)
T ss_pred cCCEEEEECCCCCCCCC-CcccccCHHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHHHHhCh---HhcceEEEECCC
Confidence 35999999997544211 000001122233444444433 347777766665553 478899989988
Q ss_pred Cc
Q psy8613 92 SP 93 (191)
Q Consensus 92 gP 93 (191)
++
T Consensus 187 ~~ 188 (354)
T PLN02578 187 GQ 188 (354)
T ss_pred cc
Confidence 64
No 15
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=65.40 E-value=15 Score=28.38 Aligned_cols=84 Identities=7% Similarity=-0.086 Sum_probs=41.6
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCCCCCC--------HHHHHhhhHHHHHHHHH-------hhhccccc
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPDLP--------IALAATNTQIIGRPTAL-------LILDMLGC 65 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a~~~~--------Y~~a~~nt~~VG~~la~-------~l~~llGA 65 (191)
++||+.. +.....-.-.+|. .+++|+++||........ +...+.. ++-..+.+ ++.+++|+
T Consensus 6 ~~hG~~~-~~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~G~S~Gg 81 (251)
T TIGR03695 6 FLHGFLG-SGADWQALIELLG-PHFRCLAIDLPGHGSSQSPDEIERYDFEEAAQD--ILATLLDQLGIEPFFLVGYSMGG 81 (251)
T ss_pred EEcCCCC-chhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCCCccChhhHHHHHHH--HHHHHHHHcCCCeEEEEEeccHH
Confidence 4788632 2222221223444 679999999964432211 1111111 01111111 12234588
Q ss_pred hhhhhccccccccCceeeeeeecCCC
Q psy8613 66 PCSGIRGQRCAEQGVQIGRITGLDPA 91 (191)
Q Consensus 66 HiaG~ag~~~~~~~~~l~RITgLDPA 91 (191)
.+|=.++.+.. .++.+++-++|.
T Consensus 82 ~ia~~~a~~~~---~~v~~lil~~~~ 104 (251)
T TIGR03695 82 RIALYYALQYP---ERVQGLILESGS 104 (251)
T ss_pred HHHHHHHHhCc---hheeeeEEecCC
Confidence 88776665553 367777777765
No 16
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=64.59 E-value=11 Score=32.54 Aligned_cols=89 Identities=10% Similarity=-0.068 Sum_probs=43.7
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCCCCC---C----HHHHHhhhHHHHHHHHH----------hhhccc
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPDL---P----IALAATNTQIIGRPTAL----------LILDML 63 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a~~~---~----Y~~a~~nt~~VG~~la~----------~l~~ll 63 (191)
++||+..-..........+|....++|+.+|+.....+. . +...+..+..+=+.+.. ++.+++
T Consensus 64 llHG~~~~~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSm 143 (330)
T PLN02298 64 MVHGYGNDISWTFQSTAIFLAQMGFACFALDLEGHGRSEGLRAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESM 143 (330)
T ss_pred EEcCCCCCcceehhHHHHHHHhCCCEEEEecCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecc
Confidence 579984221111111123455668999999997433221 1 11122222211111111 122456
Q ss_pred cchhhhhccccccccCceeeeeeecCCCC
Q psy8613 64 GCPCSGIRGQRCAEQGVQIGRITGLDPAS 92 (191)
Q Consensus 64 GAHiaG~ag~~~~~~~~~l~RITgLDPAg 92 (191)
|+.+|-.++.... .++.++.-+.|..
T Consensus 144 GG~ia~~~a~~~p---~~v~~lvl~~~~~ 169 (330)
T PLN02298 144 GGAICLLIHLANP---EGFDGAVLVAPMC 169 (330)
T ss_pred hhHHHHHHHhcCc---ccceeEEEecccc
Confidence 8888876554432 3677888777753
No 17
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=60.97 E-value=9.2 Score=34.78 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=20.6
Q ss_pred cccchhhhhccccccccCceeeeeeecCCCCc
Q psy8613 62 MLGCPCSGIRGQRCAEQGVQIGRITGLDPASP 93 (191)
Q Consensus 62 llGAHiaG~ag~~~~~~~~~l~RITgLDPAgP 93 (191)
++|+.+|-.++.... .++.+++-++|++.
T Consensus 184 S~GG~la~~~a~~~p---~~v~~lvl~~p~~~ 212 (402)
T PLN02894 184 SFGGYVAAKYALKHP---EHVQHLILVGPAGF 212 (402)
T ss_pred CHHHHHHHHHHHhCc---hhhcEEEEECCccc
Confidence 458888876665543 47888888998863
No 18
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=60.30 E-value=15 Score=31.81 Aligned_cols=69 Identities=12% Similarity=0.023 Sum_probs=38.0
Q ss_pred hCCCCCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhh-----------ccccchhhhhccccccccCceeeeeee
Q psy8613 19 YSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLIL-----------DMLGCPCSGIRGQRCAEQGVQIGRITG 87 (191)
Q Consensus 19 yl~~~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~-----------~llGAHiaG~ag~~~~~~~~~l~RITg 87 (191)
.|..+ ++|+++|+....... -.....+...+.+.+..++. +++|+.+|-.++... ..++.+++.
T Consensus 153 ~l~~~-~~v~~~d~~g~G~s~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~---~~~v~~lv~ 227 (371)
T PRK14875 153 ALAAG-RPVIALDLPGHGASS-KAVGAGSLDELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARA---PQRVASLTL 227 (371)
T ss_pred HHhcC-CEEEEEcCCCCCCCC-CCCCCCCHHHHHHHHHHHHHhcCCccEEEEeechHHHHHHHHHHhC---chheeEEEE
Confidence 44444 999999996543220 00011223333444444433 245777776555443 247889999
Q ss_pred cCCCC
Q psy8613 88 LDPAS 92 (191)
Q Consensus 88 LDPAg 92 (191)
++|++
T Consensus 228 ~~~~~ 232 (371)
T PRK14875 228 IAPAG 232 (371)
T ss_pred ECcCC
Confidence 98874
No 19
>PRK10673 acyl-CoA esterase; Provisional
Probab=58.65 E-value=10 Score=30.61 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=34.5
Q ss_pred CCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhh-----------ccccchhhhhccccccccCceeeeeeecCCC
Q psy8613 23 EDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLIL-----------DMLGCPCSGIRGQRCAEQGVQIGRITGLDPA 91 (191)
Q Consensus 23 ~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~-----------~llGAHiaG~ag~~~~~~~~~l~RITgLDPA 91 (191)
.+++||.+|+.....+ ..... .......+.+..+|. +++||.+|-..+.... .++.+++.+|++
T Consensus 41 ~~~~vi~~D~~G~G~s-~~~~~-~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~~---~~v~~lvli~~~ 115 (255)
T PRK10673 41 NDHDIIQVDMRNHGLS-PRDPV-MNYPAMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAP---DRIDKLVAIDIA 115 (255)
T ss_pred hCCeEEEECCCCCCCC-CCCCC-CCHHHHHHHHHHHHHHcCCCceEEEEECHHHHHHHHHHHhCH---hhcceEEEEecC
Confidence 4689999999653211 10000 011122223333332 3458887776665443 478899999865
No 20
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=58.54 E-value=14 Score=29.53 Aligned_cols=87 Identities=3% Similarity=-0.251 Sum_probs=44.5
Q ss_pred CCCCCCCCCCChH--HHHHHhCCCCCceEEEEcCCCCCCCCC-H-HHHHhhhHHHHHHHHHhhh-----------ccccc
Q psy8613 1 MVNNLAPFGCNKI--LFQTCYSPQEDAKRDPSRLEKGLPDLP-I-ALAATNTQIIGRPTALLIL-----------DMLGC 65 (191)
Q Consensus 1 ~~~~~~~~~~~~~--~i~~ayl~~~d~NVi~VDW~~~a~~~~-Y-~~a~~nt~~VG~~la~~l~-----------~llGA 65 (191)
+|||+ +++... .....+++..+++||++|+.....+.. . .....++......+..++. +++|+
T Consensus 30 ~~hG~--~g~~~~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liG~S~Gg 107 (288)
T TIGR01250 30 LLHGG--PGMSHEYLENLRELLKEEGREVIMYDQLGCGYSDQPDDSDELWTIDYFVDELEEVREKLGLDKFYLLGHSWGG 107 (288)
T ss_pred EEcCC--CCccHHHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCCcccccccHHHHHHHHHHHHHHcCCCcEEEEEeehHH
Confidence 36775 344322 233455555579999999975432110 0 0000122223333333332 34588
Q ss_pred hhhhhccccccccCceeeeeeecCCCC
Q psy8613 66 PCSGIRGQRCAEQGVQIGRITGLDPAS 92 (191)
Q Consensus 66 HiaG~ag~~~~~~~~~l~RITgLDPAg 92 (191)
.++-.++.... .++.++.-++|+.
T Consensus 108 ~ia~~~a~~~p---~~v~~lvl~~~~~ 131 (288)
T TIGR01250 108 MLAQEYALKYG---QHLKGLIISSMLD 131 (288)
T ss_pred HHHHHHHHhCc---cccceeeEecccc
Confidence 88777665543 3677777776653
No 21
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=55.69 E-value=15 Score=33.61 Aligned_cols=90 Identities=7% Similarity=-0.126 Sum_probs=44.1
Q ss_pred CCCCCCCCCCChH-HHHHHhCCCCCceEEEEcCCCCCCCCCHHH---HHhhhHHHHHHHHHhhhcc-------ccchhhh
Q psy8613 1 MVNNLAPFGCNKI-LFQTCYSPQEDAKRDPSRLEKGLPDLPIAL---AATNTQIIGRPTALLILDM-------LGCPCSG 69 (191)
Q Consensus 1 ~~~~~~~~~~~~~-~i~~ayl~~~d~NVi~VDW~~~a~~~~Y~~---a~~nt~~VG~~la~~l~~l-------lGAHiaG 69 (191)
+|||+..- .... .+... |. +++.||++||.....+..-.. ..-+.....+.|..+|..+ +|--..|
T Consensus 132 llHG~~~~-~~~w~~~~~~-L~-~~~~Via~DlpG~G~S~~p~~~~~~~ys~~~~a~~l~~~i~~l~~~~~~LvG~s~GG 208 (383)
T PLN03084 132 LIHGFPSQ-AYSYRKVLPV-LS-KNYHAIAFDWLGFGFSDKPQPGYGFNYTLDEYVSSLESLIDELKSDKVSLVVQGYFS 208 (383)
T ss_pred EECCCCCC-HHHHHHHHHH-Hh-cCCEEEEECCCCCCCCCCCcccccccCCHHHHHHHHHHHHHHhCCCCceEEEECHHH
Confidence 57887532 1111 12333 33 479999999976542210000 0012233444555555432 2322233
Q ss_pred hccccccc-cCceeeeeeecCCCCc
Q psy8613 70 IRGQRCAE-QGVQIGRITGLDPASP 93 (191)
Q Consensus 70 ~ag~~~~~-~~~~l~RITgLDPAgP 93 (191)
.++..+.. ...++.+++-++|+.+
T Consensus 209 ~ia~~~a~~~P~~v~~lILi~~~~~ 233 (383)
T PLN03084 209 PPVVKYASAHPDKIKKLILLNPPLT 233 (383)
T ss_pred HHHHHHHHhChHhhcEEEEECCCCc
Confidence 33333322 2458999999999854
No 22
>PLN00021 chlorophyllase
Probab=54.83 E-value=45 Score=29.54 Aligned_cols=90 Identities=9% Similarity=-0.024 Sum_probs=45.9
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCCCCCCHHHHHhh----hHHHHHHHHHhh--------------hcc
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPDLPIALAATN----TQIIGRPTALLI--------------LDM 62 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a~~~~Y~~a~~n----t~~VG~~la~~l--------------~~l 62 (191)
++||+.--.-.-.++.+.+ ....+.|+++|+...+. ......... ...+-..+..++ -++
T Consensus 57 ~lHG~~~~~~~y~~l~~~L-as~G~~VvapD~~g~~~-~~~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS 134 (313)
T PLN00021 57 FLHGYLLYNSFYSQLLQHI-ASHGFIVVAPQLYTLAG-PDGTDEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHS 134 (313)
T ss_pred EECCCCCCcccHHHHHHHH-HhCCCEEEEecCCCcCC-CCchhhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEEC
Confidence 4688753222233344443 34468999999865442 112111111 222222222222 124
Q ss_pred ccchhhhhccccccc--cCceeeeeeecCCCC
Q psy8613 63 LGCPCSGIRGQRCAE--QGVQIGRITGLDPAS 92 (191)
Q Consensus 63 lGAHiaG~ag~~~~~--~~~~l~RITgLDPAg 92 (191)
+|+.+|=.++..... ...++..+.++||..
T Consensus 135 ~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~ 166 (313)
T PLN00021 135 RGGKTAFALALGKAAVSLPLKFSALIGLDPVD 166 (313)
T ss_pred cchHHHHHHHhhccccccccceeeEEeecccc
Confidence 588877666644332 124688999999964
No 23
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=54.07 E-value=16 Score=32.35 Aligned_cols=83 Identities=7% Similarity=-0.083 Sum_probs=43.3
Q ss_pred CCCCCCCCCCChHHHH-HHhCCCCCceEEEEcCCCCCCCC-----CHHHHHhhhHHHHHHHHHhhhc-----------cc
Q psy8613 1 MVNNLAPFGCNKILFQ-TCYSPQEDAKRDPSRLEKGLPDL-----PIALAATNTQIIGRPTALLILD-----------ML 63 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~-~ayl~~~d~NVi~VDW~~~a~~~-----~Y~~a~~nt~~VG~~la~~l~~-----------ll 63 (191)
++||+. -+ ...|-. -.+|.. ++.||++|+.....+. .|. .......+..+|.. ++
T Consensus 93 llHG~~-~~-~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~~~~~~-----~~~~a~~l~~~l~~l~~~~~~lvGhS~ 164 (360)
T PLN02679 93 LVHGFG-AS-IPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPPGFSYT-----METWAELILDFLEEVVQKPTVLIGNSV 164 (360)
T ss_pred EECCCC-CC-HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCCCcccc-----HHHHHHHHHHHHHHhcCCCeEEEEECH
Confidence 478864 22 223321 223443 6999999997554221 231 22333444444432 34
Q ss_pred cchhhhhccccccccCceeeeeeecCCCCc
Q psy8613 64 GCPCSGIRGQRCAEQGVQIGRITGLDPASP 93 (191)
Q Consensus 64 GAHiaG~ag~~~~~~~~~l~RITgLDPAgP 93 (191)
|+.||-.+.... ...++.+++-++|++.
T Consensus 165 Gg~ia~~~a~~~--~P~rV~~LVLi~~~~~ 192 (360)
T PLN02679 165 GSLACVIAASES--TRDLVRGLVLLNCAGG 192 (360)
T ss_pred HHHHHHHHHHhc--ChhhcCEEEEECCccc
Confidence 777665433211 1247888998998753
No 24
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=53.43 E-value=20 Score=31.31 Aligned_cols=88 Identities=5% Similarity=-0.178 Sum_probs=42.9
Q ss_pred CCCCCCCCCCChHH-HHHHhCCCCCceEEEEcCCCCCCC---CCH----HHHHhhhHHHHHHHH----------Hhhhcc
Q psy8613 1 MVNNLAPFGCNKIL-FQTCYSPQEDAKRDPSRLEKGLPD---LPI----ALAATNTQIIGRPTA----------LLILDM 62 (191)
Q Consensus 1 ~~~~~~~~~~~~~~-i~~ayl~~~d~NVi~VDW~~~a~~---~~Y----~~a~~nt~~VG~~la----------~~l~~l 62 (191)
++||+..- +...+ -....|....++|+++|+.....+ ..| ...+..+..+=..+. .++.++
T Consensus 92 ~lHG~~~~-~~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhS 170 (349)
T PLN02385 92 FCHGYGDT-CTFFFEGIARKIASSGYGVFAMDYPGFGLSEGLHGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQS 170 (349)
T ss_pred EECCCCCc-cchHHHHHHHHHHhCCCEEEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEec
Confidence 47886432 22111 122345556899999999654321 122 222222211111111 112235
Q ss_pred ccchhhhhccccccccCceeeeeeecCCCC
Q psy8613 63 LGCPCSGIRGQRCAEQGVQIGRITGLDPAS 92 (191)
Q Consensus 63 lGAHiaG~ag~~~~~~~~~l~RITgLDPAg 92 (191)
+|+.||-...... ..++.+++-++|+.
T Consensus 171 mGG~val~~a~~~---p~~v~glVLi~p~~ 197 (349)
T PLN02385 171 MGGAVALKVHLKQ---PNAWDGAILVAPMC 197 (349)
T ss_pred cchHHHHHHHHhC---cchhhheeEecccc
Confidence 6887776654433 24678888888764
No 25
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=51.94 E-value=21 Score=29.42 Aligned_cols=70 Identities=9% Similarity=-0.057 Sum_probs=35.8
Q ss_pred CCCCCceEEEEcCCCCCCCC----CHHHHHhhhHHHHHHHHHh-------hhccccchhhhhccccccccCceeeeeeec
Q psy8613 20 SPQEDAKRDPSRLEKGLPDL----PIALAATNTQIIGRPTALL-------ILDMLGCPCSGIRGQRCAEQGVQIGRITGL 88 (191)
Q Consensus 20 l~~~d~NVi~VDW~~~a~~~----~Y~~a~~nt~~VG~~la~~-------l~~llGAHiaG~ag~~~~~~~~~l~RITgL 88 (191)
+....++|+++|......+. .+......++.+.+.+..+ +.+++|+.++-..+.+. ..++.+++-+
T Consensus 56 l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~---p~~v~~lvl~ 132 (282)
T TIGR03343 56 FVDAGYRVILKDSPGFNKSDAVVMDEQRGLVNARAVKGLMDALDIEKAHLVGNSMGGATALNFALEY---PDRIGKLILM 132 (282)
T ss_pred HHhCCCEEEEECCCCCCCCCCCcCcccccchhHHHHHHHHHHcCCCCeeEEEECchHHHHHHHHHhC---hHhhceEEEE
Confidence 33446999999996444221 1111111223333332221 11235666665554433 2468888888
Q ss_pred CCCC
Q psy8613 89 DPAS 92 (191)
Q Consensus 89 DPAg 92 (191)
+|++
T Consensus 133 ~~~~ 136 (282)
T TIGR03343 133 GPGG 136 (282)
T ss_pred CCCC
Confidence 8864
No 26
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=48.91 E-value=13 Score=28.79 Aligned_cols=83 Identities=8% Similarity=-0.047 Sum_probs=42.2
Q ss_pred CCCCCCCCCCChHHHH--HHhCCCCCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhh-------hccccchhhhhc
Q psy8613 1 MVNNLAPFGCNKILFQ--TCYSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLI-------LDMLGCPCSGIR 71 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~--~ayl~~~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l-------~~llGAHiaG~a 71 (191)
++||+ +++....+ ..+|. +.++||.+|+........- ...+...+-+.+...+ .+++|+.++-.+
T Consensus 9 ~~HG~---~~~~~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~--~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~ 82 (245)
T TIGR01738 9 LIHGW---GMNAEVFRCLDEELS-AHFTLHLVDLPGHGRSRGF--GPLSLADAAEAIAAQAPDPAIWLGWSLGGLVALHI 82 (245)
T ss_pred EEcCC---CCchhhHHHHHHhhc-cCeEEEEecCCcCccCCCC--CCcCHHHHHHHHHHhCCCCeEEEEEcHHHHHHHHH
Confidence 47885 44333322 22333 4599999999754422110 0011222222232222 234577777665
Q ss_pred cccccccCceeeeeeecCCCC
Q psy8613 72 GQRCAEQGVQIGRITGLDPAS 92 (191)
Q Consensus 72 g~~~~~~~~~l~RITgLDPAg 92 (191)
+.+.. .++.+++-++|+.
T Consensus 83 a~~~p---~~v~~~il~~~~~ 100 (245)
T TIGR01738 83 AATHP---DRVRALVTVASSP 100 (245)
T ss_pred HHHCH---HhhheeeEecCCc
Confidence 54443 3688888887763
No 27
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=47.04 E-value=32 Score=27.84 Aligned_cols=61 Identities=10% Similarity=-0.031 Sum_probs=34.2
Q ss_pred CceEEEEcCCCCCCCC-----CHHHHHhhhHHHHHHHHHhhh-----------ccccchhhhhccccccccCceeeeeee
Q psy8613 24 DAKRDPSRLEKGLPDL-----PIALAATNTQIIGRPTALLIL-----------DMLGCPCSGIRGQRCAEQGVQIGRITG 87 (191)
Q Consensus 24 d~NVi~VDW~~~a~~~-----~Y~~a~~nt~~VG~~la~~l~-----------~llGAHiaG~ag~~~~~~~~~l~RITg 87 (191)
+++|+++|......+. .|. .....+.+..++. +++||-++-.++.... .++.+++.
T Consensus 54 ~~~vi~~D~~G~G~S~~~~~~~~~-----~~~~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p---~~v~~~v~ 125 (278)
T TIGR03056 54 SFRVVAPDLPGHGFTRAPFRFRFT-----LPSMAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGP---VTPRMVVG 125 (278)
T ss_pred CcEEEeecCCCCCCCCCccccCCC-----HHHHHHHHHHHHHHcCCCCceEEEECccHHHHHHHHHhCC---cccceEEE
Confidence 5999999997433111 121 1222333333332 3457777776665543 35778888
Q ss_pred cCCCC
Q psy8613 88 LDPAS 92 (191)
Q Consensus 88 LDPAg 92 (191)
++|+-
T Consensus 126 ~~~~~ 130 (278)
T TIGR03056 126 INAAL 130 (278)
T ss_pred EcCcc
Confidence 88753
No 28
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=43.55 E-value=42 Score=28.52 Aligned_cols=85 Identities=11% Similarity=-0.039 Sum_probs=43.1
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCCCC-------CCHHHHHhhhHHHHHHHHH--------hhhccccc
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPD-------LPIALAATNTQIIGRPTAL--------LILDMLGC 65 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a~~-------~~Y~~a~~nt~~VG~~la~--------~l~~llGA 65 (191)
+|||+-- +.....-...+|+...++|+++|+.....+ ..+...+. .+-..|.. ++.+++|+
T Consensus 23 liHG~~~-~~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~---~l~~~i~~l~~~~~v~lvGhS~GG 98 (273)
T PLN02211 23 LIHGISG-GSWCWYKIRCLMENSGYKVTCIDLKSAGIDQSDADSVTTFDEYNK---PLIDFLSSLPENEKVILVGHSAGG 98 (273)
T ss_pred EECCCCC-CcCcHHHHHHHHHhCCCEEEEecccCCCCCCCCcccCCCHHHHHH---HHHHHHHhcCCCCCEEEEEECchH
Confidence 4788542 222222223455556799999999653311 11112121 12122211 12234588
Q ss_pred hhhhhccccccccCceeeeeeecCCCC
Q psy8613 66 PCSGIRGQRCAEQGVQIGRITGLDPAS 92 (191)
Q Consensus 66 HiaG~ag~~~~~~~~~l~RITgLDPAg 92 (191)
.++-.+..... .++.+++-+++.-
T Consensus 99 ~v~~~~a~~~p---~~v~~lv~~~~~~ 122 (273)
T PLN02211 99 LSVTQAIHRFP---KKICLAVYVAATM 122 (273)
T ss_pred HHHHHHHHhCh---hheeEEEEecccc
Confidence 88777765442 3677888777643
No 29
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=41.99 E-value=19 Score=27.96 Aligned_cols=65 Identities=11% Similarity=-0.095 Sum_probs=34.0
Q ss_pred hCCCCCceEEEEcCCCCCCC----CCHHHHHhhhHHHHHHHHHhhh-----------ccccchhhhhccccccccCceee
Q psy8613 19 YSPQEDAKRDPSRLEKGLPD----LPIALAATNTQIIGRPTALLIL-----------DMLGCPCSGIRGQRCAEQGVQIG 83 (191)
Q Consensus 19 yl~~~d~NVi~VDW~~~a~~----~~Y~~a~~nt~~VG~~la~~l~-----------~llGAHiaG~ag~~~~~~~~~l~ 83 (191)
+|. ..++|+++|+.....+ ..| ......+.+..++. +++|+.++-.++... ..++.
T Consensus 35 ~l~-~~~~v~~~d~~G~G~s~~~~~~~-----~~~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~---p~~v~ 105 (251)
T TIGR02427 35 ALT-PDFRVLRYDKRGHGLSDAPEGPY-----SIEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARR---PDRVR 105 (251)
T ss_pred Hhh-cccEEEEecCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHHC---HHHhH
Confidence 344 4699999999654321 112 11222222223222 345777766544433 23677
Q ss_pred eeeecCCCC
Q psy8613 84 RITGLDPAS 92 (191)
Q Consensus 84 RITgLDPAg 92 (191)
++..++|+.
T Consensus 106 ~li~~~~~~ 114 (251)
T TIGR02427 106 ALVLSNTAA 114 (251)
T ss_pred HHhhccCcc
Confidence 778888764
No 30
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=39.33 E-value=15 Score=31.16 Aligned_cols=58 Identities=10% Similarity=-0.032 Sum_probs=26.5
Q ss_pred CCCCCCC-CCCChHHHHHHhCCCCCce---EEEEcCCCCCCCCCHHHHHh-hhHHHHHHHHHhhhc
Q psy8613 1 MVNNLAP-FGCNKILFQTCYSPQEDAK---RDPSRLEKGLPDLPIALAAT-NTQIIGRPTALLILD 61 (191)
Q Consensus 1 ~~~~~~~-~~~~~~~i~~ayl~~~d~N---Vi~VDW~~~a~~~~Y~~a~~-nt~~VG~~la~~l~~ 61 (191)
+|||+-. ...+-..+...|.+. .+. |...+|.... ......... ..+.+ ++|+.||..
T Consensus 6 lVHG~~~~~~~~w~~~~~~l~~~-GY~~~~vya~tyg~~~-~~~~~~~~~~~~~~~-~~l~~fI~~ 68 (219)
T PF01674_consen 6 LVHGTGGNAYSNWSTLAPYLKAA-GYCDSEVYALTYGSGN-GSPSVQNAHMSCESA-KQLRAFIDA 68 (219)
T ss_dssp EE--TTTTTCGGCCHHHHHHHHT-T--CCCEEEE--S-CC-HHTHHHHHHB-HHHH-HHHHHHHHH
T ss_pred EECCCCcchhhCHHHHHHHHHHc-CCCcceeEeccCCCCC-CCCcccccccchhhH-HHHHHHHHH
Confidence 4788775 333333345444444 466 8999998877 323333222 44444 677777754
No 31
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=38.29 E-value=47 Score=24.62 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.4
Q ss_pred cchhhhhccccccccCceeeeeeecCCC
Q psy8613 64 GCPCSGIRGQRCAEQGVQIGRITGLDPA 91 (191)
Q Consensus 64 GAHiaG~ag~~~~~~~~~l~RITgLDPA 91 (191)
|+++.-|.||.+. -++|++.+||.
T Consensus 7 ~~~L~~f~gk~V~----ivGkV~~~~~~ 30 (101)
T cd04479 7 GAMLSQFVGKTVR----IVGKVEKVDGD 30 (101)
T ss_pred HHHHHhhCCCEEE----EEEEEEEecCC
Confidence 5667777888885 69999999986
No 32
>PRK03592 haloalkane dehalogenase; Provisional
Probab=38.28 E-value=37 Score=28.47 Aligned_cols=79 Identities=6% Similarity=-0.147 Sum_probs=42.4
Q ss_pred CCCCCCCCCCChH-HHHHHhCCCCCceEEEEcCCCCCCC----CCHHHHHhhhHHHHHHHHHhhh-----------cccc
Q psy8613 1 MVNNLAPFGCNKI-LFQTCYSPQEDAKRDPSRLEKGLPD----LPIALAATNTQIIGRPTALLIL-----------DMLG 64 (191)
Q Consensus 1 ~~~~~~~~~~~~~-~i~~ayl~~~d~NVi~VDW~~~a~~----~~Y~~a~~nt~~VG~~la~~l~-----------~llG 64 (191)
+|||+. -+...+ .+...+.+ ++.||++|+.....+ ..|. .....+.+..+|. +++|
T Consensus 32 llHG~~-~~~~~w~~~~~~L~~--~~~via~D~~G~G~S~~~~~~~~-----~~~~a~dl~~ll~~l~~~~~~lvGhS~G 103 (295)
T PRK03592 32 FLHGNP-TSSYLWRNIIPHLAG--LGRCLAPDLIGMGASDKPDIDYT-----FADHARYLDAWFDALGLDDVVLVGHDWG 103 (295)
T ss_pred EECCCC-CCHHHHHHHHHHHhh--CCEEEEEcCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHHhCCCCeEEEEECHH
Confidence 478874 222222 13334433 359999999654422 1232 2222233333333 2347
Q ss_pred chhhhhccccccccCceeeeeeecCC
Q psy8613 65 CPCSGIRGQRCAEQGVQIGRITGLDP 90 (191)
Q Consensus 65 AHiaG~ag~~~~~~~~~l~RITgLDP 90 (191)
|.||-..+.+. ..++.+++-++|
T Consensus 104 g~ia~~~a~~~---p~~v~~lil~~~ 126 (295)
T PRK03592 104 SALGFDWAARH---PDRVRGIAFMEA 126 (295)
T ss_pred HHHHHHHHHhC---hhheeEEEEECC
Confidence 77776665554 358999999997
No 33
>PRK10749 lysophospholipase L2; Provisional
Probab=32.59 E-value=56 Score=28.39 Aligned_cols=28 Identities=18% Similarity=0.001 Sum_probs=17.1
Q ss_pred cccchhhhhccccccccCceeeeeeecCCCC
Q psy8613 62 MLGCPCSGIRGQRCAEQGVQIGRITGLDPAS 92 (191)
Q Consensus 62 llGAHiaG~ag~~~~~~~~~l~RITgLDPAg 92 (191)
++|+.||....... ..++.+++-+.|+.
T Consensus 139 SmGG~ia~~~a~~~---p~~v~~lvl~~p~~ 166 (330)
T PRK10749 139 SMGGAILTLFLQRH---PGVFDAIALCAPMF 166 (330)
T ss_pred cHHHHHHHHHHHhC---CCCcceEEEECchh
Confidence 45777775443322 24677888888863
No 34
>PRK10162 acetyl esterase; Provisional
Probab=31.16 E-value=36 Score=29.73 Aligned_cols=61 Identities=5% Similarity=-0.185 Sum_probs=36.2
Q ss_pred HHHHhCCCCCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhh-------------hccccchhhhhcccccc
Q psy8613 15 FQTCYSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLI-------------LDMLGCPCSGIRGQRCA 76 (191)
Q Consensus 15 i~~ayl~~~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l-------------~~llGAHiaG~ag~~~~ 76 (191)
+...+.....+.|++|||...- ...|..++.....+=+.+.+.. .++.||++|..++..++
T Consensus 103 ~~~~la~~~g~~Vv~vdYrlap-e~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~ 176 (318)
T PRK10162 103 IMRLLASYSGCTVIGIDYTLSP-EARFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLR 176 (318)
T ss_pred HHHHHHHHcCCEEEEecCCCCC-CCCCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHH
Confidence 3444545568999999998543 4556655544433333332211 13459999988886654
No 35
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=28.29 E-value=1.3e+02 Score=26.05 Aligned_cols=72 Identities=11% Similarity=-0.158 Sum_probs=39.1
Q ss_pred hCCCCCceEEEEcCCCCCCCC------CHHHHHhhhHHHHHHHHH-------hhhccccchhhhhccccccccCceeeee
Q psy8613 19 YSPQEDAKRDPSRLEKGLPDL------PIALAATNTQIIGRPTAL-------LILDMLGCPCSGIRGQRCAEQGVQIGRI 85 (191)
Q Consensus 19 yl~~~d~NVi~VDW~~~a~~~------~Y~~a~~nt~~VG~~la~-------~l~~llGAHiaG~ag~~~~~~~~~l~RI 85 (191)
.|....++|+.+|......+. .+...+..+..+=+.+.+ ++-.++|+.++-.++.... .++.++
T Consensus 51 ~La~~Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~Dv~~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p---~~v~~l 127 (266)
T TIGR03101 51 AFAAGGFGVLQIDLYGCGDSAGDFAAARWDVWKEDVAAAYRWLIEQGHPPVTLWGLRLGALLALDAANPLA---AKCNRL 127 (266)
T ss_pred HHHHCCCEEEEECCCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCc---cccceE
Confidence 445678999999996543221 122222222222112211 1113458888876554442 468889
Q ss_pred eecCCCCc
Q psy8613 86 TGLDPASP 93 (191)
Q Consensus 86 TgLDPAgP 93 (191)
+-++|+..
T Consensus 128 VL~~P~~~ 135 (266)
T TIGR03101 128 VLWQPVVS 135 (266)
T ss_pred EEeccccc
Confidence 99999765
No 36
>PRK03922 hypothetical protein; Provisional
Probab=28.16 E-value=33 Score=26.63 Aligned_cols=16 Identities=38% Similarity=0.486 Sum_probs=14.0
Q ss_pred ccccccCCCCCCcEEE
Q psy8613 101 TSLVSLNSGDAHYVDV 116 (191)
Q Consensus 101 ~~~~rLd~~DA~fVdV 116 (191)
+...||+|+|++||+|
T Consensus 30 eaGkrLn~~~l~yVei 45 (113)
T PRK03922 30 EAGKRLNPEDLDYVEV 45 (113)
T ss_pred HHHhhcCcccCCeEEE
Confidence 3467999999999998
No 37
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=27.69 E-value=57 Score=27.10 Aligned_cols=65 Identities=8% Similarity=-0.098 Sum_probs=36.1
Q ss_pred hCCCCCceEEEEcCCCCCCCC----CHHHHHhhhHHHHHHHHHhhh-----------ccccchhhhhccccccccCceee
Q psy8613 19 YSPQEDAKRDPSRLEKGLPDL----PIALAATNTQIIGRPTALLIL-----------DMLGCPCSGIRGQRCAEQGVQIG 83 (191)
Q Consensus 19 yl~~~d~NVi~VDW~~~a~~~----~Y~~a~~nt~~VG~~la~~l~-----------~llGAHiaG~ag~~~~~~~~~l~ 83 (191)
+|.. +++||++|-.....+. .|. .....+.+..+|. +++||-||-..+.... .++.
T Consensus 47 ~L~~-~~~vi~~Dl~G~G~S~~~~~~~~-----~~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p---~~v~ 117 (276)
T TIGR02240 47 ALDP-DLEVIAFDVPGVGGSSTPRHPYR-----FPGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHDYP---ERCK 117 (276)
T ss_pred Hhcc-CceEEEECCCCCCCCCCCCCcCc-----HHHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHHCH---HHhh
Confidence 3443 6899999986443221 121 1222223333332 2347777766665443 4788
Q ss_pred eeeecCCCC
Q psy8613 84 RITGLDPAS 92 (191)
Q Consensus 84 RITgLDPAg 92 (191)
+++-++|+.
T Consensus 118 ~lvl~~~~~ 126 (276)
T TIGR02240 118 KLILAATAA 126 (276)
T ss_pred heEEeccCC
Confidence 999998875
No 38
>PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair. ; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D.
Probab=27.40 E-value=1.1e+02 Score=22.79 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=31.5
Q ss_pred cchhhhhccccccccCceeeeeeecCCCCccccccccccccccCCCCCCcEEEEecCC
Q psy8613 64 GCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDG 121 (191)
Q Consensus 64 GAHiaG~ag~~~~~~~~~l~RITgLDPAgP~F~~~~~~~~~rLd~~DA~fVdVIHT~~ 121 (191)
|+++.-+.||.+. -+||++.+||++-.+. |+.+|-.-|.|.....
T Consensus 10 ~~~L~~~~gk~Vr----ivGkv~~~~~~g~~~~---------l~~~d~~~V~v~l~~~ 54 (109)
T PF08661_consen 10 GSMLSQFVGKTVR----IVGKVESVDPDGGSAT---------LSTSDGGQVTVSLNPP 54 (109)
T ss_dssp GGGGGGGTTSEEE----EEEEEEEE-TTSSEEE---------EE-TTS-EEEEEESS-
T ss_pred HHHHHhhCCCeEE----EEEEEeeEcCCCCEEE---------EEcCCCCEEEEEeCCC
Confidence 7788888999886 6999999999986653 4556666777666643
No 39
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=24.51 E-value=25 Score=28.22 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=28.7
Q ss_pred cccchhhhhccccccccCceeeeeeecCCCCccc
Q psy8613 62 MLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLF 95 (191)
Q Consensus 62 llGAHiaG~ag~~~~~~~~~l~RITgLDPAgP~F 95 (191)
++|+.||=-+++++...|.++.++.-+|..-|.+
T Consensus 74 S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p~~ 107 (229)
T PF00975_consen 74 SFGGILAFEMARQLEEAGEEVSRLILIDSPPPSI 107 (229)
T ss_dssp THHHHHHHHHHHHHHHTT-SESEEEEESCSSTTC
T ss_pred CccHHHHHHHHHHHHHhhhccCceEEecCCCCCc
Confidence 4699999999999988788999999999776765
No 40
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=24.17 E-value=77 Score=25.01 Aligned_cols=76 Identities=12% Similarity=-0.033 Sum_probs=48.5
Q ss_pred HHHHhCCCCCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhh-------------ccccchhhhhcccccccc-Cc
Q psy8613 15 FQTCYSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLIL-------------DMLGCPCSGIRGQRCAEQ-GV 80 (191)
Q Consensus 15 i~~ayl~~~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~-------------~llGAHiaG~ag~~~~~~-~~ 80 (191)
+...+.+...+.|+++|++..- ...|...+..+...=+.+.+-.. ++-|||+|-.++...... ..
T Consensus 20 ~~~~la~~~g~~v~~~~Yrl~p-~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~ 98 (211)
T PF07859_consen 20 FAARLAAERGFVVVSIDYRLAP-EAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLP 98 (211)
T ss_dssp HHHHHHHHHTSEEEEEE---TT-TSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHhhccEEEEEeeccccc-cccccccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhccc
Confidence 4444554467899999999765 66788777776655555554421 123999999999777653 23
Q ss_pred eeeeeeecCCC
Q psy8613 81 QIGRITGLDPA 91 (191)
Q Consensus 81 ~l~RITgLDPA 91 (191)
++..+..+-|.
T Consensus 99 ~~~~~~~~~p~ 109 (211)
T PF07859_consen 99 KPKGIILISPW 109 (211)
T ss_dssp HESEEEEESCH
T ss_pred chhhhhccccc
Confidence 56777777773
No 41
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=23.77 E-value=1.1e+02 Score=26.10 Aligned_cols=34 Identities=6% Similarity=-0.150 Sum_probs=21.3
Q ss_pred CCCCCCCCCCChHHHHHHhCCCCCceEEEEcCCCCC
Q psy8613 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGL 36 (191)
Q Consensus 1 ~~~~~~~~~~~~~~i~~ayl~~~d~NVi~VDW~~~a 36 (191)
+|||++..++. ..+.. ++....++||++|+....
T Consensus 32 llHG~~~~~~~-~~~~~-~~~~~~~~vi~~D~~G~G 65 (306)
T TIGR01249 32 FLHGGPGSGTD-PGCRR-FFDPETYRIVLFDQRGCG 65 (306)
T ss_pred EECCCCCCCCC-HHHHh-ccCccCCEEEEECCCCCC
Confidence 47897555443 22333 344457999999997643
No 42
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=22.43 E-value=72 Score=27.94 Aligned_cols=21 Identities=0% Similarity=-0.279 Sum_probs=14.3
Q ss_pred HHHHHhCCCCCceEEEEcCCCC
Q psy8613 14 LFQTCYSPQEDAKRDPSRLEKG 35 (191)
Q Consensus 14 ~i~~ayl~~~d~NVi~VDW~~~ 35 (191)
++...+. ...++|+++||...
T Consensus 85 ~~~~~L~-~~G~~V~~~D~~g~ 105 (350)
T TIGR01836 85 SLVRGLL-ERGQDVYLIDWGYP 105 (350)
T ss_pred hHHHHHH-HCCCeEEEEeCCCC
Confidence 4454444 45689999999753
No 43
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=21.74 E-value=76 Score=24.53 Aligned_cols=64 Identities=9% Similarity=-0.056 Sum_probs=35.4
Q ss_pred ceEEEEcCCCCCCCCC---HHHHHhhhHHHHHHHHHhhhc-----------cccchhhhhccccccccCceeeeeeecCC
Q psy8613 25 AKRDPSRLEKGLPDLP---IALAATNTQIIGRPTALLILD-----------MLGCPCSGIRGQRCAEQGVQIGRITGLDP 90 (191)
Q Consensus 25 ~NVi~VDW~~~a~~~~---Y~~a~~nt~~VG~~la~~l~~-----------llGAHiaG~ag~~~~~~~~~l~RITgLDP 90 (191)
+.||++||.....+.. .....-.+..+-+.+..++.. ++|+-++-..+.... .++.+|+-+.|
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p---~~v~~lvl~~~ 77 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYP---ERVKKLVLISP 77 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSG---GGEEEEEEESE
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCc---hhhcCcEEEee
Confidence 4699999976553322 112222233344444444332 236666655554443 48999998888
Q ss_pred C
Q psy8613 91 A 91 (191)
Q Consensus 91 A 91 (191)
+
T Consensus 78 ~ 78 (230)
T PF00561_consen 78 P 78 (230)
T ss_dssp S
T ss_pred e
Confidence 6
No 44
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=20.85 E-value=44 Score=30.03 Aligned_cols=31 Identities=26% Similarity=0.452 Sum_probs=23.4
Q ss_pred cchhhhhccccccccCceeeeeeecCCCC-cccc
Q psy8613 64 GCPCSGIRGQRCAEQGVQIGRITGLDPAS-PLFR 96 (191)
Q Consensus 64 GAHiaG~ag~~~~~~~~~l~RITgLDPAg-P~F~ 96 (191)
|.+++|. +++++..... -||.+.||++ |.|.
T Consensus 180 GGTitGv-ar~Lk~~~p~-i~iv~vdP~~S~~~~ 211 (300)
T COG0031 180 GGTITGV-ARYLKERNPN-VRIVAVDPEGSVLLS 211 (300)
T ss_pred chhHHHH-HHHHHhhCCC-cEEEEECCCCCcccC
Confidence 9999995 6888764333 4999999995 5554
No 45
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=20.74 E-value=89 Score=26.34 Aligned_cols=70 Identities=10% Similarity=0.057 Sum_probs=51.9
Q ss_pred HhCCCCCceEEEEcCCCCCCCCCHHHHHhhhHHHHHHHHHhhhc---------------cccchhhhhccccccc-cCce
Q psy8613 18 CYSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLILD---------------MLGCPCSGIRGQRCAE-QGVQ 81 (191)
Q Consensus 18 ayl~~~d~NVi~VDW~~~a~~~~Y~~a~~nt~~VG~~la~~l~~---------------llGAHiaG~ag~~~~~-~~~~ 81 (191)
..|+...+.|+.|| ...|.+..+.-+.+.+.++++|.. +.||=|.=++-+++.. .-.+
T Consensus 23 ~~l~~~G~~VvGvd------sl~Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~ 96 (192)
T PF06057_consen 23 EALAKQGVPVVGVD------SLRYFWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALRAR 96 (192)
T ss_pred HHHHHCCCeEEEec------hHHHHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHHhh
Confidence 44556678999998 366887777777777777777753 2399999999888854 3457
Q ss_pred eeeeeecCCCCc
Q psy8613 82 IGRITGLDPASP 93 (191)
Q Consensus 82 l~RITgLDPAgP 93 (191)
|.+|.=|-|+.=
T Consensus 97 v~~v~Ll~p~~~ 108 (192)
T PF06057_consen 97 VAQVVLLSPSTT 108 (192)
T ss_pred eeEEEEeccCCc
Confidence 888888888754
No 46
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.04 E-value=96 Score=29.19 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=24.7
Q ss_pred CCCCCCCh--HH----HHHHhCCCCCceEEEEcCCCCCC
Q psy8613 5 LAPFGCNK--IL----FQTCYSPQEDAKRDPSRLEKGLP 37 (191)
Q Consensus 5 ~~~~~~~~--~~----i~~ayl~~~d~NVi~VDW~~~a~ 37 (191)
..||||=. +. ++..--+++..|++.||.+.++.
T Consensus 339 lqPFGCmPnhI~~kgm~k~lk~~~p~ani~aVd~d~Gds 377 (420)
T COG3581 339 LQPFGCMPNHIVSKGMIKGLKRDKPKANIAAVDYDPGDS 377 (420)
T ss_pred ecCccCCcHHHHHHHHHHHHHhcCCCCceEEeecCCCch
Confidence 46999933 22 35555667899999999999883
Done!