RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8613
(191 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 113 bits (286), Expect = 3e-31
Identities = 51/140 (36%), Positives = 68/140 (48%), Gaps = 30/140 (21%)
Query: 44 AATNTQIIGRPTALLILDM-----------------LGCPCSGIRGQRCAEQGVQIGRIT 86
A NT+++G A + + LG +G G+R ++GRIT
Sbjct: 85 AVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKR---LNGKLGRIT 141
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGL 146
GLDPA PLF A L+ DA +VDVIH+DG LG + IGH+D++PNGG
Sbjct: 142 GLDPAGPLFS--GADPEDRLDPSDAQFVDVIHTDGG-----LLGFSQPIGHADFYPNGGR 194
Query: 147 DQPGCE---HKKNAVLVSHL 163
DQPGC + V SH
Sbjct: 195 DQPGCPKDILSSDFVACSHQ 214
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 94.8 bits (236), Expect = 1e-23
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 24/141 (17%)
Query: 44 AATNTQIIGRPTALLILDM-----------------LGCPCSGIRGQRCAEQGVQIGRIT 86
A N +++G A L++++ LG +G G+R + ++GRIT
Sbjct: 121 ATLNVRVVGAEVAKLLVELEEELNVSPENVHLIGHSLGAHVAGEAGRRTKGK-TKLGRIT 179
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGL 146
GLDPA P F+ L L+ GDA +VD IH+D G+G + +GH D+FPNGG
Sbjct: 180 GLDPAGPYFKG--TPELTRLDPGDADFVDAIHTDTRPIPGLGMGTSQRVGHVDFFPNGGS 237
Query: 147 DQPGC----EHKKNAVLVSHL 163
+QPGC V +H+
Sbjct: 238 EQPGCQNNVLEGTQFVACAHM 258
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 69.5 bits (170), Expect = 3e-14
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Query: 63 LGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGA 122
LG +GI G + + RITGLDPA P F A + +L+ DA +VDV+H++
Sbjct: 128 LGAHVAGIAGSLTKHK---VNRITGLDPAGPTFEY--ADAPSTLSPDDADFVDVLHTNTR 182
Query: 123 RHWSEGLGLFEAIGHSDYFPNGGLDQPGCE 152
+G+ +GH D +PNGG QPGC+
Sbjct: 183 GSPDRSIGIQRPVGHIDIYPNGGTFQPGCD 212
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 47.1 bits (112), Expect = 5e-07
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 8/75 (10%)
Query: 82 IGRITGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDG---ARHWSEGLGLFEAIGHS 138
+ R+ P A + L+ DA +VD I +D R G G G +
Sbjct: 57 LVRVYTFGPPRVGNA---AFAEDRLDPSDALFVDRIVNDNDIVPRLPPGGEGYP--HGGA 111
Query: 139 DYFPNGGLDQPGCEH 153
+++ NGG QPGC
Sbjct: 112 EFYINGGKSQPGCCK 126
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 26.8 bits (59), Expect = 7.2
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 120 DGARHWSEGLGLF---EAIGHSDYFP-NGGL 146
D AR W E GL E + ++ FP NGGL
Sbjct: 178 DAARQWVEKQGLLPSSEELPLTESFPGNGGL 208
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 27.0 bits (60), Expect = 7.3
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 103 LVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGL 146
L+S N D+I +D + S GL E+IG PNGGL
Sbjct: 406 LISANHSVEEICDIIGADSLTYLSVD-GLIESIGLDTDAPNGGL 448
>gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase. This
model describes the enzyme o-succinylbenzoic acid
synthetase (menC) that is involved in one of the steps
of the menaquinone biosynthesis pathway. It takes SHCHC
and makes it into 2-succinylbenzoate. Included in this
model are low GC gram positive bacteria and archaea.
Also included in the seed and in the model are enzymes
with the com-name of N-acylamino acid racemase (or the
more general term, racemase / racemase family), which
refers to the enzyme's industrial application as
racemases, and not to its biological function as
o-succinylbenzoic acid synthetase [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 324
Score = 26.7 bits (59), Expect = 8.4
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 95 FRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE 127
F+ TS +LN D +++I G + E
Sbjct: 7 FKSPFKTSKGTLNHRDCLIIELIDDKGNAGFGE 39
>gnl|CDD|165398 PHA03126, PHA03126, dUTPase; Provisional.
Length = 326
Score = 26.5 bits (58), Expect = 8.7
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 25/81 (30%)
Query: 20 SPQEDAKRDPSRLEKGLPDLPIALAATNTQII-----------------------GRPTA 56
S DA +P E DLPI A++N + GR
Sbjct: 183 SAPTDATIEPD--ESHFVDLPIVFASSNPAVTPCIFGRSSMNRRGLIVLPTRWVAGRTCC 240
Query: 57 LLILDMLGCPCSGIRGQRCAE 77
IL++ P S +GQR A+
Sbjct: 241 FFILNVNKYPVSITKGQRVAQ 261
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.422
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,682,756
Number of extensions: 883771
Number of successful extensions: 601
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 12
Length of query: 191
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 100
Effective length of database: 6,901,388
Effective search space: 690138800
Effective search space used: 690138800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)