RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8613
(191 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 98.9 bits (246), Expect = 1e-24
Identities = 52/158 (32%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 44 AATNTQIIGRPTALLILDM-----------------LGCPCSGIRGQRCAEQGVQIGRIT 86
A N +I+G TA LI + LG +G G+R ++GR+T
Sbjct: 119 AVQNIRIVGAETAYLIQQLLTELSYNPENVHIIGHSLGAHTAGEAGRRL---EGRVGRVT 175
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARH-WSEGLGLFEAIGHSDYFPNGG 145
GLDPA P F+ A+ V L+ DA +VDVIH+D + S G G+ + +GH D+FPNGG
Sbjct: 176 GLDPAEPCFQD--ASEEVRLDPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGG 233
Query: 146 LDQPGCEHKKNAVLVSHLEKTPQMQRQSAVEHY-SWML 182
PGC+ + + Q A H S+
Sbjct: 234 KQMPGCKRSSFSTFIDINGIWQGAQDYLACNHLKSFEY 271
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 96.6 bits (240), Expect = 5e-24
Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 44 AATNTQIIGRPTALLILDM-----------------LGCPCSGIRGQRCAEQGVQIGRIT 86
A+ N +I+G A L+ + LG +G G+R +GRIT
Sbjct: 118 ASQNVRIVGAEVAYLVGVLQSSFDYSPSNVHIIGHSLGSHAAGEAGRR---TNGAVGRIT 174
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARH-WSEGLGLFEAIGHSDYFPNGG 145
GLDPA P F+ LV L+ DA +VDVIH+D A + G G+ + GH D+FPNGG
Sbjct: 175 GLDPAEPCFQG--TPELVRLDPSDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGG 232
Query: 146 LDQPGCEHKKNAVLVSHLEKTPQMQRQSAVEH-YSWML 182
+ PGC+ + +V + +A H S+
Sbjct: 233 KEMPGCQKNVLSQIVDIDGIWQGTRDFAACNHLRSYKY 270
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 95.4 bits (237), Expect = 2e-23
Identities = 47/138 (34%), Positives = 68/138 (49%), Gaps = 26/138 (18%)
Query: 44 AATNTQIIGRPTALLILDM-----------------LGCPCSGIRGQRCAEQGVQIGRIT 86
A+ N +++G A L+ + LG +G G+R +GRIT
Sbjct: 119 ASQNIRVVGAEVAYLVQVLSTSLNYAPENVHIIGHSLGAHTAGEAGKRL---NGLVGRIT 175
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARH-WSEGLGLFEAIGHSDYFPNGG 145
GLDPA P F+ V L+ DA +VDVIH+D + S G G+ + +GH D+FPNGG
Sbjct: 176 GLDPAEPYFQD--TPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGG 233
Query: 146 LDQPGCEHKKNAVLVSHL 163
D PGC+ + +H
Sbjct: 234 KDMPGCK---TGISCNHH 248
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 95.1 bits (236), Expect = 2e-23
Identities = 46/152 (30%), Positives = 66/152 (43%), Gaps = 24/152 (15%)
Query: 44 AATNTQIIGRPTALLILDM-----------------LGCPCSGIRGQRCAEQGVQIGRIT 86
AA N +++G A ++ + LG +G G R +GRIT
Sbjct: 119 AANNVRVVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTP----GLGRIT 174
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGG 145
GLDP F+ V L+ DA +VDVIH+D A G G + +GH D+FPNGG
Sbjct: 175 GLDPVEASFQG--TPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGG 232
Query: 146 LDQPGCEHKKNAVLVSHLEKTPQMQRQSAVEH 177
+ PGC+ + +V + A H
Sbjct: 233 EEMPGCKKNALSQIVDLDGIWEGTRDFVACNH 264
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 94.7 bits (235), Expect = 3e-23
Identities = 50/152 (32%), Positives = 70/152 (46%), Gaps = 23/152 (15%)
Query: 44 AATNTQIIGRPTALLILDM-----------------LGCPCSGIRGQRCAEQGVQIGRIT 86
A+ NT+++G A L+ + LG G G+R +GRIT
Sbjct: 119 ASYNTRVVGAEIAFLVQVLSTEMGYSPENVHLIGHSLGAHVVGEAGRRL---EGHVGRIT 175
Query: 87 GLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGG 145
GLDPA P F+ V L+ DA +VDVIH+D A G G+ + +GH D+FPNGG
Sbjct: 176 GLDPAEPCFQG--LPEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGG 233
Query: 146 LDQPGCEHKKNAVLVSHLEKTPQMQRQSAVEH 177
+ PGC+ + +V Q A H
Sbjct: 234 KEMPGCQKNILSTIVDINGIWEGTQNFVACNH 265
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.018
Identities = 29/213 (13%), Positives = 49/213 (23%), Gaps = 81/213 (38%)
Query: 1 MVNNLAPFGCNKILFQTCYSPQEDAKRDPSRLEKGLPDLPIALAATNTQIIGRPTALLIL 60
M+ L +I S + + R+ +L L + LL+L
Sbjct: 201 MLQKL----LYQIDPNWT-SRSDHSSNIKLRIHSIQAELRRLLKSKP-----YENCLLVL 250
Query: 61 DMLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLF----RQLLATSLVS----LNSGDAH 112
VQ + + F + LL T L++
Sbjct: 251 L-----------------NVQNAKA--WNA----FNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 113 YVDVIHSDGARHWSEGLGLF-------------EA----------IG--------HSDYF 141
++ + H E L E I D +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 142 PNGGLDQPGCEHKKNAVLVS--HLEKTPQMQRQ 172
C+ + S LE P R+
Sbjct: 348 -----KHVNCDKLTTIIESSLNVLE--PAEYRK 373
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.10
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 8/28 (28%)
Query: 26 KRDPSRLEKGL----PD-LPIALA--AT 46
K+ +L+ L D P ALA AT
Sbjct: 19 KQALKKLQASLKLYADDSAP-ALAIKAT 45
>1r31_A 3-hydroxy-3-methylglutaryl-coenzyme A reductase; 4-electron
oxido-reductase, oxidoreductase; HET: COA MEV; 2.10A
{Pseudomonas mevalonii} SCOP: d.58.20.1 d.179.1.1 PDB:
1qay_A* 1qax_A* 1r7i_A 1t02_A*
Length = 428
Score = 27.7 bits (61), Expect = 2.9
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 39 LPIALAATNTQIIGRPTALLILDMLGCPCSG 69
+P+ + P A L L +LG +
Sbjct: 321 MPMPVGLVGGATKTHPLAQLSLRILGVKTAQ 351
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 26.4 bits (58), Expect = 5.3
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 12/84 (14%)
Query: 49 QIIGRPTALLILDMLGCPCSGIRGQRCAEQGVQIGRITGLDPASPLFRQLLATSLVSLNS 108
++ P +I D +G +G A QG + ++P+ + +Q + V +
Sbjct: 28 NLLNLPKGSVIAD-IGAG-TGGYSVALANQG---LFVYAVEPSIVMRQQAVVHPQVEWFT 82
Query: 109 GDAH-------YVDVIHSDGARHW 125
G A VD + S A H
Sbjct: 83 GYAENLALPDKSVDGVISILAIHH 106
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.422
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,923,285
Number of extensions: 166985
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 263
Number of HSP's successfully gapped: 10
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)