BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8614
(199 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LPA|B Chain B, Interfacial Activation Of The Lipase-Procolipase Complex
By Mixed Micelles Revealed By X-Ray Crystallography
pdb|1LPB|B Chain B, The 2.46 Angstroms Resolution Structure Of The Pancreatic
Lipase Colipase Complex Inhibited By A C11 Alkyl
Phosphonate
pdb|1N8S|A Chain A, Structure Of The Pancreatic Lipase-Colipase Complex
Length = 449
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 84/142 (59%), Gaps = 11/142 (7%)
Query: 11 FGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSLNS 69
FGY N H G SLGAH AG AGR IGRI GLDPA P F+ LV L+
Sbjct: 140 FGYSPSNVHVIGHSLGAHAAGEAGRRTNGT---IGRITGLDPAEPCFQG--TPELVRLDP 194
Query: 70 GDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVS---HLE 125
DA +VDVIH+DGA G G+ + +GH D+FPNGG++ PGC+ + +V E
Sbjct: 195 SDAKFVDVIHTDGAPIVPNLGFGMSQVVGHLDFFPNGGVEMPGCKKNILSQIVDIDGIWE 254
Query: 126 GTMNSSVVCNHIRAWKLFYESL 147
GT + + CNH+R++K + +S+
Sbjct: 255 GTRDFA-ACNHLRSYKYYTDSI 275
>pdb|1BU8|A Chain A, Rat Pancreatic Lipase Related Protein 2
Length = 452
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/217 (36%), Positives = 112/217 (51%), Gaps = 30/217 (13%)
Query: 1 MVVLVLSWVDFGYPQDNSH-CGFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQL 59
+V VLS + GY +N H G SLGAHV G AGR ++ +GRI GLDPA P F+ L
Sbjct: 132 FLVQVLS-TEMGYSPENVHLIGHSLGAHVVGEAGRRLEGH---VGRITGLDPAEPCFQGL 187
Query: 60 LATSLVSLNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCEHKKNA 118
V L+ DA +VDVIH+D A G G+ + +GH D+FPNGG + PGC+ +
Sbjct: 188 --PEEVRLDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILS 245
Query: 119 VLVS---HLEGTMNSSVVCNHIRAWKLFYESL---------KMSKREDGCKFFAFHCPGG 166
+V EGT N V CNH+R++K + S+ S E + F CP
Sbjct: 246 TIVDINGIWEGTQN-FVACNHLRSYKYYASSILNPDGFLGYPCSSYEKFQQNDCFPCP-- 302
Query: 167 LKNGSCGMMGYGSEESKARGA-----LYLVTRDTAPY 198
C MG+ +++ + + A +YL T D+ +
Sbjct: 303 --EEGCPKMGHYADQFEGKTATVEQTVYLNTGDSGNF 337
>pdb|1W52|X Chain X, Crystal Structure Of A Proteolyzed Form Of Pancreatic
Lipase Related Protein 2 From Horse
Length = 452
Score = 99.8 bits (247), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 32/197 (16%)
Query: 9 VDFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSL 67
+ Y +N H G SLGAH AG AGR ++ + +GR+ GLDPA P F+ A+ V L
Sbjct: 139 TELSYNPENVHIIGHSLGAHTAGEAGRRLEGR---VGRVTGLDPAEPCFQD--ASEEVRL 193
Query: 68 NSGDAHYVDVIHSDGARHW-SEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEG 126
+ DA +VDVIH+D + S G G+ + +GH D+FPNGG PGC+ + + + G
Sbjct: 194 DPSDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMPGCKRSSFSTFID-ING 252
Query: 127 TMNSS---VVCNHIRAWKLFYESLKMSK-------------REDGCKFFAFHCPGGLKNG 170
+ + CNH+++++ + S+ +E+GC F CP G
Sbjct: 253 IWQGAQDYLACNHLKSFEYYSSSILNPDGFLAYPCDSYDKFQENGC----FPCPA----G 304
Query: 171 SCGMMGYGSEESKARGA 187
C MG+ +++ K + +
Sbjct: 305 GCPKMGHYADQYKEKTS 321
>pdb|1ETH|A Chain A, Triacylglycerol LipaseCOLIPASE COMPLEX
pdb|1ETH|C Chain C, Triacylglycerol LipaseCOLIPASE COMPLEX
Length = 448
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/142 (42%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 11 FGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSLNS 69
GY N H G SLG+H AG AGR I RI GLDPA P F+ LV L+
Sbjct: 140 LGYSPSNVHVIGHSLGSHAAGEAGRRTNGT---IERITGLDPAEPCFQG--TPELVRLDP 194
Query: 70 GDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVS---HLE 125
DA +VDVIH+D A G G+ + +GH D+FPNGG PGC+ + +V E
Sbjct: 195 SDAKFVDVIHTDAAPIIPNLGFGMSQTVGHLDFFPNGGKQMPGCQKNILSQIVDIDGIWE 254
Query: 126 GTMNSSVVCNHIRAWKLFYESL 147
GT + V CNH+R++K + +S+
Sbjct: 255 GTRD-FVACNHLRSYKYYADSI 275
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/142 (40%), Positives = 79/142 (55%), Gaps = 11/142 (7%)
Query: 11 FGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSLNS 69
F Y N H G SLG+H AG AGR +GRI GLDPA P F+ LV L+
Sbjct: 140 FDYSPSNVHIIGHSLGSHAAGEAGRRTNGA---VGRITGLDPAEPCFQG--TPELVRLDP 194
Query: 70 GDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEGTM 128
DA +VDVIH+D A G G+ + GH D+FPNGG + PGC+ + +V ++G
Sbjct: 195 SDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQKNVLSQIVD-IDGIW 253
Query: 129 NSS---VVCNHIRAWKLFYESL 147
+ CNH+R++K + +S+
Sbjct: 254 QGTRDFAACNHLRSYKYYTDSI 275
>pdb|2PPL|A Chain A, Human Pancreatic Lipase-Related Protein 1
Length = 485
Score = 90.5 bits (223), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 82/151 (54%), Gaps = 14/151 (9%)
Query: 3 VLVLSWVDFGYPQDNSH-CGFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLA 61
+L + ++ YP H G SLGAHVAG AG +K + RI GLDP F
Sbjct: 158 MLDILLTEYSYPPSKVHLIGHSLGAHVAGEAG----SKTPGLSRITGLDPVEASFES--T 211
Query: 62 TSLVSLNSGDAHYVDVIHSDGARHWS-EGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAV- 119
V L+ DA +VDVIH+D A G G + +GH D+FPNGG PGC KKNA+
Sbjct: 212 PEEVRLDPSDADFVDVIHTDAAPLIPFLGFGTNQQMGHLDFFPNGGESMPGC--KKNALS 269
Query: 120 LVSHLEGTMNSS---VVCNHIRAWKLFYESL 147
+ L+G + V CNH+R++K + ES+
Sbjct: 270 QIVDLDGIWAGTRDFVACNHLRSYKYYLESI 300
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 84/155 (54%), Gaps = 16/155 (10%)
Query: 1 MVVLVLSWVDFGY---PQDNSHCGFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFR 57
V +LS + Y P G SLGAHVAG AG ++ +GRI GLDP F+
Sbjct: 129 QVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAG----SRTPGLGRITGLDPVEASFQ 184
Query: 58 QLLATSLVSLNSGDAHYVDVIHSDGARHWS-EGLGLFEAIGHSDYFPNGGLDQPGCEHKK 116
V L+ DA +VDVIH+D A G G + +GH D+FPNGG + PGC KK
Sbjct: 185 G--TPEEVRLDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGC--KK 240
Query: 117 NAV-LVSHLEGTMNSS---VVCNHIRAWKLFYESL 147
NA+ + L+G + V CNH+R++K + ES+
Sbjct: 241 NALSQIVDLDGIWEGTRDFVACNHLRSYKYYSESI 275
>pdb|1GPL|A Chain A, Rp2 Lipase
Length = 432
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 45/195 (23%)
Query: 2 VVLVLSWVDFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLL 60
+V VLS Y +N H G SLGAH AG AG+ + +GRI GLDPA P F+
Sbjct: 133 LVQVLS-TSLNYAPENVHIIGHSLGAHTAGEAGKRLNGL---VGRITGLDPAEPYFQD-- 186
Query: 61 ATSLVSLNSGDAHYVDVIHSDGARHW-SEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAV 119
V L+ DA +VDVIH+D + S G G+ + +GH D+FPNGG D PGC+
Sbjct: 187 TPEEVRLDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGCK------ 240
Query: 120 LVSHLEGTMNSSVVCNHIRAWKLFYESLKMSK-------------REDGCKFFAFHCPGG 166
+ + CNH R+ + ++ S+ + +E GC F CP
Sbjct: 241 ----------TGISCNHHRSIEYYHSSILNPEGFLGYPCASYDEFQESGC----FPCPA- 285
Query: 167 LKNGSCGMMGYGSEE 181
C MG+ +++
Sbjct: 286 ---KGCPKMGHFADQ 297
>pdb|2PVS|A Chain A, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
pdb|2PVS|B Chain B, Structure Of Human Pancreatic Lipase Related Protein 2
Mutant N336q
Length = 452
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 83/145 (57%), Gaps = 13/145 (8%)
Query: 9 VDFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSL 67
GY ++ H G SLGAH A AGR + + GRI GLDPA P F+ V L
Sbjct: 139 TQLGYSLEDVHVIGHSLGAHTAAEAGRRLGGRV---GRITGLDPAGPCFQD--EPEEVRL 193
Query: 68 NSGDAHYVDVIHSDGARHW-SEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAV-LVSHLE 125
+ DA +VDVIH+D + S G G+ + +GH D+FPNGG + PGC KKN + ++ ++
Sbjct: 194 DPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGC--KKNVLSTITDID 251
Query: 126 GT---MNSSVVCNHIRAWKLFYESL 147
G + V CNH+R+++ + S+
Sbjct: 252 GIWEGIGGFVSCNHLRSFEYYSSSV 276
>pdb|2OXE|A Chain A, Structure Of The Human Pancreatic Lipase-Related Protein 2
pdb|2OXE|B Chain B, Structure Of The Human Pancreatic Lipase-Related Protein 2
Length = 466
Score = 77.4 bits (189), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/145 (39%), Positives = 83/145 (57%), Gaps = 13/145 (8%)
Query: 9 VDFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSL 67
GY ++ H G SLGAH A AGR + + GRI GLDPA P F+ V L
Sbjct: 141 TQLGYSLEDVHVIGHSLGAHTAAEAGRRLGGRV---GRITGLDPAGPCFQD--EPEEVRL 195
Query: 68 NSGDAHYVDVIHSDGARHW-SEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAV-LVSHLE 125
+ DA +VDVIH+D + S G G+ + +GH D+FPNGG + PGC KKN + ++ ++
Sbjct: 196 DPSDAVFVDVIHTDSSPIVPSLGFGMSQKVGHLDFFPNGGKEMPGC--KKNVLSTITDID 253
Query: 126 GT---MNSSVVCNHIRAWKLFYESL 147
G + V CNH+R+++ + S+
Sbjct: 254 GIWEGIGGFVSCNHLRSFEYYSSSV 278
>pdb|1FOK|A Chain A, Structure Of Restriction Endonuclease Foki Bound To Dna
Length = 576
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 74 YVDVIHSDGARHWSEGLGLFEAIGHSDYF 102
Y+D SDG W+ LG E I SD F
Sbjct: 98 YIDNWSSDGFLRWAHALGFIEYINKSDSF 126
>pdb|2FOK|A Chain A, Structure Of Restriction Endonuclease Foki
pdb|2FOK|B Chain B, Structure Of Restriction Endonuclease Foki
Length = 579
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 74 YVDVIHSDGARHWSEGLGLFEAIGHSDYF 102
Y+D SDG W+ LG E I SD F
Sbjct: 101 YIDNWSSDGFLRWAHALGFIEYINKSDSF 129
>pdb|1J30|A Chain A, The Crystal Structure Of Sulerythrin, A Rubrerythrin-Like
Protein From A Strictly Aerobic And Thermoacidiphilic
Archaeon
pdb|1J30|B Chain B, The Crystal Structure Of Sulerythrin, A Rubrerythrin-Like
Protein From A Strictly Aerobic And Thermoacidiphilic
Archaeon
Length = 144
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 95 AIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEGTMNSSVVCNHIRAWKLFYESLKMSKRED 154
A GH D+ GGL P + + LE M S + W Y RE+
Sbjct: 57 AFGHLDFIRQGGLTDPATDKP-----IGTLE-QMIESAIAGETYEWTQMYPGFAKVAREE 110
Query: 155 G 155
G
Sbjct: 111 G 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,757,870
Number of Sequences: 62578
Number of extensions: 287162
Number of successful extensions: 515
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 15
length of query: 199
length of database: 14,973,337
effective HSP length: 94
effective length of query: 105
effective length of database: 9,091,005
effective search space: 954555525
effective search space used: 954555525
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)