RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8614
(199 letters)
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 169 bits (430), Expect = 1e-52
Identities = 73/194 (37%), Positives = 92/194 (47%), Gaps = 35/194 (18%)
Query: 11 FGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSLNS 69
G +N H G SLGAHVAG+AG+ + K+GRI GLDPA PLF A L+
Sbjct: 107 TGLSLENVHLIGHSLGAHVAGFAGKRLN---GKLGRITGLDPAGPLFS--GADPEDRLDP 161
Query: 70 GDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEGTMN 129
DA +VDVIH+DG LG + IGH+D++PNGG DQPGC +
Sbjct: 162 SDAQFVDVIHTDGG-----LLGFSQPIGHADFYPNGGRDQPGCPKDILSS---------- 206
Query: 130 SSVVCNHIRAWKLFYESLKMSKREDGCKFFAFHCPGG--LKNGSCG-------MMGYGSE 180
V C+H RA F ES+ C F A+ C G C MGY ++
Sbjct: 207 DFVACSHQRAVHYFAESILSP-----CGFVAYPCSSYDEFLAGKCFPCGSGCVRMGYHAD 261
Query: 181 ESKARGALYLVTRD 194
+ G YL T
Sbjct: 262 RFRREGKFYLKTNA 275
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 146 bits (371), Expect = 3e-43
Identities = 80/216 (37%), Positives = 103/216 (47%), Gaps = 35/216 (16%)
Query: 1 MVVLVLSWV--DFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFR 57
V +L + + +N H G SLGAHVAG AGR K+GRI GLDPA P F+
Sbjct: 131 EVAKLLVELEEELNVSPENVHLIGHSLGAHVAGEAGRRT-KGKTKLGRITGLDPAGPYFK 189
Query: 58 QLLATSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKN 117
L L+ GDA +VD IH+D G+G + +GH D+FPNGG +QPGC +N
Sbjct: 190 G--TPELTRLDPGDADFVDAIHTDTRPIPGLGMGTSQRVGHVDFFPNGGSEQPGC---QN 244
Query: 118 AVLVSHLEGTMNSSVVCNHIRAWKLFYESLKMSKREDGCKFFAFHCPG----------GL 167
V LEGT V C H+R+ + F ESL + F A+ C G
Sbjct: 245 NV----LEGT--QFVACAHMRSVRYFAESL-----LNPRNFPAYPCSSYDEFSNNKCFGC 293
Query: 168 KNGSCGMMGY-----GSEESKARGALYLVTRDTAPY 198
G C MG + SK G YL T +P+
Sbjct: 294 PKGRCPYMGIYADKFDGKTSKLEGDYYLNTNSKSPF 329
>gnl|CDD|132274 TIGR03230, lipo_lipase, lipoprotein lipase. Members of this
protein family are lipoprotein lipase (EC 3.1.1.34), a
eukaryotic triacylglycerol lipase active in plasma and
similar to pancreatic and hepatic triacylglycerol
lipases (EC 3.1.1.3). It is also called clearing factor.
It cleaves chylomicron and VLDL triacylglycerols; it
also has phospholipase A-1 activity.
Length = 442
Score = 111 bits (279), Expect = 5e-29
Identities = 74/214 (34%), Positives = 110/214 (51%), Gaps = 27/214 (12%)
Query: 2 VVLVLSWV--DFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQ 58
V ++W+ +F YP DN H G+SLGAHVAG AG ++K + RI GLDPA P F
Sbjct: 103 VAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHK---VNRITGLDPAGPTFEY 159
Query: 59 LLATSLVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNA 118
A + +L+ DA +VDV+H++ +G+ +GH D +PNGG QPGC+ +
Sbjct: 160 --ADAPSTLSPDDADFVDVLHTNTRGSPDRSIGIQRPVGHIDIYPNGGTFQPGCD-IQET 216
Query: 119 VLVSHLEG--TMNSSVVCNHIRAWKLFYESL----------KMSKREDGCKFFAFHCPGG 166
+LV +G M+ V C+H R+ LF +SL + S +E K C
Sbjct: 217 LLVIAEKGLGNMDQLVKCSHERSIHLFIDSLLNEENPSMAYRCSSKEAFNKGLCLSC--- 273
Query: 167 LKNGSCGMMGYGSEESKAR--GALYLVTRDTAPY 198
+ C +GY + + + +YL TR+ PY
Sbjct: 274 -RKNRCNKLGYEINKVRTKRSSKMYLKTREMMPY 306
>gnl|CDD|238382 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 153
Score = 71.0 bits (174), Expect = 8e-16
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 20 CGFSLGAHVAGYAGRGVQ-NKGFKIGRILGLDPASPLFRQLLATSLVSLNSGDAHYVDVI 78
G SLG +AG AG ++ ++ R+ P A + L+ DA +VD I
Sbjct: 33 TGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVGNA---AFAEDRLDPSDALFVDRI 89
Query: 79 H--SDGARHWSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLEGTMNS-SVVCN 135
+D G + G ++++ NGG QPGC + S + +C+
Sbjct: 90 VNDNDIVPRLPPGGEGY-PHGGAEFYINGGKSQPGCCKNVLEAVDIDFGNIGLSGNGLCD 148
Query: 136 HIRAW 140
H+R +
Sbjct: 149 HLRYF 153
>gnl|CDD|225463 COG2911, COG2911, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1278
Score = 29.2 bits (66), Expect = 1.6
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 5 VLSWVDFGYPQDNSHCGFSLGAHVAGYAGRGVQNKGF-KIGRILGLD 50
LS++ FG +S L A A AG G K+G G+D
Sbjct: 1162 ALSYLLFGRSLSSSGEIAQLAAAAAALAGGGGSGSLVGKLGEAFGVD 1208
>gnl|CDD|184830 PRK14809, PRK14809, histidinol-phosphate aminotransferase;
Provisional.
Length = 357
Score = 28.6 bits (64), Expect = 2.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Query: 24 LGAHVAGYAGRGVQNKGFKIGRILGLDPAS 53
L HVA AGRG++ ++ R LGLDP
Sbjct: 6 LSDHVAYRAGRGIE----EVARELGLDPDD 31
>gnl|CDD|233466 TIGR01553, formate-DH-alph, formate dehydrogenase, alpha subunit,
proteobacterial-type. This model describes a subset of
formate dehydrogenase alpha chains found mainly in
proteobacteria but also in Aquifex. The alpha chain
contains domains for molybdopterin dinucleotide binding
and molybdopterin oxidoreductase (pfam01568 and
pfam00384, respectively). The holo-enzyme also contains
beta and gamma subunits of 32 and 20 kDa. The enzyme
catalyzes the oxidation of formate (produced from
pyruvate during anaerobic growth) to carbon dioxide with
the concomitant release of two electrons and two
protons. The electrons are utilized mainly in the
nitrate respiration by nitrate reductase. In E. coli and
Salmonella, there are two forms of the formate
dehydrogenase, one induced by nitrate which is strictly
anaerobic (fdn), and one incuced during the transition
from aerobic to anaerobic growth (fdo). This subunit is
one of only three proteins in E. coli which contain
selenocysteine. This model is well-defined, with a
large, unpopulated trusted/noise gap [Energy metabolism,
Anaerobic, Energy metabolism, Electron transport].
Length = 1009
Score = 28.3 bits (63), Expect = 3.0
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 157 KFFAFHCPGGLKNGSCGMMGYGSEESKARGALY-----LVTRDTAPYC 199
F GG + G +G+ +KA+ T YC
Sbjct: 6 AFLKL-TAGGATLSAFGGLGFDLAPAKAQARALKTVDAKQTTSVCCYC 52
>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional.
Length = 334
Score = 27.1 bits (60), Expect = 6.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 81 DGARHWSEGLGLF---EAIGHSDYFP-NGGL 107
D AR W E GL E + ++ FP NGGL
Sbjct: 178 DAARQWVEKQGLLPSSEELPLTESFPGNGGL 208
>gnl|CDD|213667 TIGR01928, menC_lowGC/arch, o-succinylbenzoate synthase. This
model describes the enzyme o-succinylbenzoic acid
synthetase (menC) that is involved in one of the steps
of the menaquinone biosynthesis pathway. It takes SHCHC
and makes it into 2-succinylbenzoate. Included in this
model are low GC gram positive bacteria and archaea.
Also included in the seed and in the model are enzymes
with the com-name of N-acylamino acid racemase (or the
more general term, racemase / racemase family), which
refers to the enzyme's industrial application as
racemases, and not to its biological function as
o-succinylbenzoic acid synthetase [Biosynthesis of
cofactors, prosthetic groups, and carriers, Menaquinone
and ubiquinone].
Length = 324
Score = 27.1 bits (60), Expect = 6.6
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 54 PLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWSE 88
P TS +LN D +++I G + E
Sbjct: 6 PFKSPF-KTSKGTLNHRDCLIIELIDDKGNAGFGE 39
>gnl|CDD|221405 pfam12069, DUF3549, Protein of unknown function (DUF3549). This
family of proteins is functionally uncharacterized. This
protein is found in bacteria. Proteins in this family
are about 340 amino acids in length. This protein has a
conserved LDE sequence motif.
Length = 342
Score = 26.8 bits (60), Expect = 8.3
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 45 RILGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGARHWS 87
R L A L LL L S D +V+ + R WS
Sbjct: 240 RALSSASAHSLVAILLDALLASQRLLDP---EVLIAIAGRCWS 279
>gnl|CDD|235984 PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.
Length = 484
Score = 27.0 bits (60), Expect = 9.1
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 64 LVSLNSGDAHYVDVIHSDGARHWSEGLGLFEAIGHSDYFPNGGL 107
L+S N D+I +D + S GL E+IG PNGGL
Sbjct: 406 LISANHSVEEICDIIGADSLTYLSVD-GLIESIGLDTDAPNGGL 448
>gnl|CDD|114880 pfam06187, DUF993, Protein of unknown function (DUF993). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 382
Score = 26.5 bits (59), Expect = 9.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 71 DAHYVDVIHSDGARHWSEGLGLFEAI 96
D +Y ++I DG H LG+F+AI
Sbjct: 252 DFNYPELIAGDGQGHSHALLGIFDAI 277
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.447
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,000,885
Number of extensions: 894904
Number of successful extensions: 665
Number of sequences better than 10.0: 1
Number of HSP's gapped: 649
Number of HSP's successfully gapped: 16
Length of query: 199
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 107
Effective length of database: 6,857,034
Effective search space: 733702638
Effective search space used: 733702638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)