RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8614
(199 letters)
>1w52_X Pancreatic lipase related protein 2; detergent, cleaved flap; HET:
DDQ; 2.99A {Equus caballus}
Length = 452
Score = 167 bits (425), Expect = 3e-50
Identities = 63/208 (30%), Positives = 100/208 (48%), Gaps = 29/208 (13%)
Query: 11 FGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSLNS 69
Y +N H G SLGAH AG AGR ++ ++GR+ GLDPA P F+ A+ V L+
Sbjct: 141 LSYNPENVHIIGHSLGAHTAGEAGRRLE---GRVGRVTGLDPAEPCFQD--ASEEVRLDP 195
Query: 70 GDAHYVDVIHSDGARH-WSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLV--SHLEG 126
DA +VDVIH+D + S G G+ + +GH D+FPNGG PGC+ + + + +
Sbjct: 196 SDAQFVDVIHTDASPMLPSLGFGMSQKVGHMDFFPNGGKQMPGCKRSSFSTFIDINGIWQ 255
Query: 127 TMNSSVVCNHIRAWKLFYESLKMSKREDGCKFFAFHCPG----------GLKNGSCGMMG 176
+ CNH+++++ + S+ F A+ C G C MG
Sbjct: 256 GAQDYLACNHLKSFEYYSSSILNP-----DGFLAYPCDSYDKFQENGCFPCPAGGCPKMG 310
Query: 177 YGSEESK-----ARGALYLVTRDTAPYC 199
+ +++ K +L T ++ Y
Sbjct: 311 HYADQYKEKTSAVEQTFFLNTGESGDYT 338
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 164 bits (416), Expect = 4e-49
Identities = 66/208 (31%), Positives = 93/208 (44%), Gaps = 29/208 (13%)
Query: 11 FGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVSLNS 69
F Y N H G SLG+H AG AGR +GRI GLDPA P F+ LV L+
Sbjct: 140 FDYSPSNVHIIGHSLGSHAAGEAGRRTN---GAVGRITGLDPAEPCFQG--TPELVRLDP 194
Query: 70 GDAHYVDVIHSDGARH-WSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVS--HLEG 126
DA +VDVIH+D A + G G+ + GH D+FPNGG + PGC+ + +V +
Sbjct: 195 SDAQFVDVIHTDIAPFIPNLGFGMSQTAGHLDFFPNGGKEMPGCQKNVLSQIVDIDGIWQ 254
Query: 127 TMNSSVVCNHIRAWKLFYESLKMSKREDGCKFFAFHCP----------GGLKNGSCGMMG 176
CNH+R++K + +S+ F F C + C MG
Sbjct: 255 GTRDFAACNHLRSYKYYTDSILNP-----DGFAGFSCASYSDFTANKCFPCSSEGCPQMG 309
Query: 177 YGSEESK-----ARGALYLVTRDTAPYC 199
+ ++ YL T D + +
Sbjct: 310 HYADRFPGRTKGVGQLFYLNTGDASNFA 337
>1bu8_A Protein (pancreatic lipase related protein 2); hydrolase, lipid
degradation; HET: NAG; 1.80A {Rattus norvegicus} SCOP:
b.12.1.2 c.69.1.19 PDB: 2oxe_A* 2pvs_A 1eth_A*
Length = 452
Score = 160 bits (405), Expect = 2e-47
Identities = 66/211 (31%), Positives = 99/211 (46%), Gaps = 29/211 (13%)
Query: 8 WVDFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVS 66
+ GY +N H G SLGAHV G AGR ++ +GRI GLDPA P F+ V
Sbjct: 138 STEMGYSPENVHLIGHSLGAHVVGEAGRRLE---GHVGRITGLDPAEPCFQG--LPEEVR 192
Query: 67 LNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCE--HKKNAVLVSH 123
L+ DA +VDVIH+D A G G+ + +GH D+FPNGG + PGC+ V ++
Sbjct: 193 LDPSDAMFVDVIHTDSAPIIPYLGFGMSQKVGHLDFFPNGGKEMPGCQKNILSTIVDING 252
Query: 124 LEGTMNSSVVCNHIRAWKLFYESLKMSKREDGCKFFAFHCPG----------GLKNGSCG 173
+ + V CNH+R++K + S+ F + C C
Sbjct: 253 IWEGTQNFVACNHLRSYKYYASSILNP-----DGFLGYPCSSYEKFQQNDCFPCPEEGCP 307
Query: 174 MMGYGSEE-----SKARGALYLVTRDTAPYC 199
MG+ +++ + +YL T D+ +
Sbjct: 308 KMGHYADQFEGKTATVEQTVYLNTGDSGNFT 338
>1gpl_A RP2 lipase; serine esterase, hydrolase, lipid degradation,
pancreas, glycoprotein, chimeric; 2.01A {Cavia
porcellus} SCOP: b.12.1.2 c.69.1.19 PDB: 1lpb_B* 1lpa_B*
1n8s_A
Length = 432
Score = 158 bits (400), Expect = 8e-47
Identities = 60/209 (28%), Positives = 89/209 (42%), Gaps = 43/209 (20%)
Query: 8 WVDFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVS 66
Y +N H G SLGAH AG AG+ + +GRI GLDPA P F+ V
Sbjct: 138 STSLNYAPENVHIIGHSLGAHTAGEAGKRLNGL---VGRITGLDPAEPYFQD--TPEEVR 192
Query: 67 LNSGDAHYVDVIHSDGARH-WSEGLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLVSHLE 125
L+ DA +VDVIH+D + S G G+ + +GH D+FPNGG D PGC+
Sbjct: 193 LDPSDAKFVDVIHTDISPILPSLGFGMSQKVGHMDFFPNGGKDMPGCK------------ 240
Query: 126 GTMNSSVVCNHIRAWKLFYESLKMSKREDGCKFFAFHCPG----------GLKNGSCGMM 175
+ + CNH R+ + ++ S+ F + C C M
Sbjct: 241 ----TGISCNHHRSIEYYHSSILNP-----EGFLGYPCASYDEFQESGCFPCPAKGCPKM 291
Query: 176 GYGSEESK-----ARGALYLVTRDTAPYC 199
G+ +++ +L T + +
Sbjct: 292 GHFADQYPGKTNAVEQTFFLNTGASDNFT 320
>1rp1_A Pancreatic lipase related protein 1; hydrolase, lipid degradation;
HET: NAG; 2.10A {Canis lupus familiaris} SCOP: b.12.1.2
c.69.1.19 PDB: 2ppl_A
Length = 450
Score = 154 bits (390), Expect = 3e-45
Identities = 62/211 (29%), Positives = 92/211 (43%), Gaps = 30/211 (14%)
Query: 8 WVDFGYPQDNSHC-GFSLGAHVAGYAGRGVQNKGFKIGRILGLDPASPLFRQLLATSLVS 66
++ Y G SLGAHVAG AG + +GRI GLDP F+ V
Sbjct: 138 SANYSYSPSQVQLIGHSLGAHVAGEAGS----RTPGLGRITGLDPVEASFQG--TPEEVR 191
Query: 67 LNSGDAHYVDVIHSDGARHWSE-GLGLFEAIGHSDYFPNGGLDQPGCEHKKNAVLV--SH 123
L+ DA +VDVIH+D A G G + +GH D+FPNGG + PGC+ + +V
Sbjct: 192 LDPTDADFVDVIHTDAAPLIPFLGFGTSQQMGHLDFFPNGGEEMPGCKKNALSQIVDLDG 251
Query: 124 LEGTMNSSVVCNHIRAWKLFYESLKMSKREDGCKFFAFHCPG----------GLKNGSCG 173
+ V CNH+R++K + ES+ F ++ C + C
Sbjct: 252 IWEGTRDFVACNHLRSYKYYSESILNP-----DGFASYPCASYRAFESNKCFPCPDQGCP 306
Query: 174 MMGY-----GSEESKARGALYLVTRDTAPYC 199
MG+ + S +L T D++ +
Sbjct: 307 QMGHYADKFAVKTSDETQKYFLNTGDSSNFA 337
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.53
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 23/66 (34%)
Query: 11 FGYPQDNSHCGFSLG-----AHVAGY----------AGRG--VQN------KGFKIGRIL 47
P D + G SLG A +A RG +Q G ++
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI 1810
Query: 48 GLDPAS 53
++P
Sbjct: 1811 AINPGR 1816
Score = 29.2 bits (65), Expect = 1.0
Identities = 37/235 (15%), Positives = 66/235 (28%), Gaps = 109/235 (46%)
Query: 3 VLVLSWVDF--GYPQDNS-HCGFSLGAHVAG----------------YAGRGVQNKGFKI 43
VL L +F Y + N H +L A + R + + F
Sbjct: 83 VLNLCLTEFENCYLEGNDIH---ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 44 GRILGLDPASPLFRQLLATSLVSLNSGDAH-------------YVD-------------- 76
S LFR ++ G+A Y +
Sbjct: 140 K------SNSALFR--------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 77 -VIHS-------------DGARHWSEGLGLFEAIGH------SDY-------FPNGGLDQ 109
+I D + +++GL + E + + DY P G+ Q
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 110 ----------PGCEHKKNAVLVSHLEGTMN------SSVVCNHIRAWKLFYESLK 148
G + L S+L+G ++V +W+ F+ S++
Sbjct: 246 LAHYVVTAKLLGFTPGE---LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 183 KARGALYLVTRDTAP 197
K + +L L D+AP
Sbjct: 24 KLQASLKLYADDSAP 38
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics,
joint center for structural genomics, JCSG; 1.50A
{Cytophaga hutchinsonii atcc 33406}
Length = 394
Score = 26.2 bits (58), Expect = 8.7
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 31 YAGRGVQ-NKGFKIGRILGLDPASPLFRQLLATSLVSLNSGDAHYVDVIHSDGA 83
Y RGV K I +D ++ + + + GD Y +++H+DGA
Sbjct: 8 YMQRGVSSQKEDVHKAIKSIDKG--IYPRAFCKIIPDILGGDPEYCNIMHADGA 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.447
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,135,686
Number of extensions: 177535
Number of successful extensions: 377
Number of sequences better than 10.0: 1
Number of HSP's gapped: 348
Number of HSP's successfully gapped: 12
Length of query: 199
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 110
Effective length of database: 4,216,824
Effective search space: 463850640
Effective search space used: 463850640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)