Query psy8615
Match_columns 128
No_of_seqs 145 out of 1291
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 23:20:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 2.1E-21 4.6E-26 130.4 12.2 83 40-123 31-114 (144)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 3.4E-21 7.3E-26 145.1 12.5 82 41-123 267-349 (352)
3 KOG0122|consensus 99.8 5.1E-20 1.1E-24 130.3 11.6 82 41-123 187-269 (270)
4 TIGR01659 sex-lethal sex-letha 99.8 1.5E-19 3.1E-24 136.6 12.5 84 38-122 102-186 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 7.1E-20 1.5E-24 137.9 10.0 80 43-123 3-83 (352)
6 KOG0146|consensus 99.8 1.8E-20 3.9E-25 134.6 5.8 94 30-124 272-366 (371)
7 PF00076 RRM_1: RNA recognitio 99.8 2.3E-18 5E-23 101.2 8.3 69 46-116 1-70 (70)
8 KOG0145|consensus 99.8 4.4E-18 9.5E-23 121.9 10.9 84 40-124 38-122 (360)
9 KOG0125|consensus 99.8 3.7E-18 8E-23 125.2 10.0 81 43-126 96-177 (376)
10 TIGR01645 half-pint poly-U bin 99.8 5.2E-18 1.1E-22 135.1 11.3 84 41-125 202-286 (612)
11 KOG0121|consensus 99.7 4.7E-18 1E-22 110.1 7.0 79 41-120 34-113 (153)
12 KOG0149|consensus 99.7 2.6E-18 5.6E-23 121.1 6.1 79 39-118 8-86 (247)
13 KOG0148|consensus 99.7 5.7E-18 1.2E-22 121.6 7.8 80 43-123 62-142 (321)
14 TIGR01645 half-pint poly-U bin 99.7 8.6E-18 1.9E-22 133.9 8.7 80 41-121 105-185 (612)
15 TIGR01659 sex-lethal sex-letha 99.7 2.3E-17 5E-22 124.6 10.3 81 41-122 191-274 (346)
16 TIGR01628 PABP-1234 polyadenyl 99.7 6.9E-17 1.5E-21 128.7 9.4 77 44-121 1-78 (562)
17 KOG0111|consensus 99.7 1.6E-17 3.4E-22 116.5 5.0 83 40-123 7-90 (298)
18 KOG0145|consensus 99.7 2.4E-16 5.2E-21 113.1 10.9 81 41-122 276-357 (360)
19 TIGR01628 PABP-1234 polyadenyl 99.7 9.6E-17 2.1E-21 127.9 9.7 81 40-122 282-363 (562)
20 PF14259 RRM_6: RNA recognitio 99.7 2.2E-16 4.8E-21 93.2 8.9 69 46-116 1-70 (70)
21 TIGR01622 SF-CC1 splicing fact 99.7 2E-16 4.3E-21 123.1 10.9 80 42-122 185-265 (457)
22 TIGR01642 U2AF_lg U2 snRNP aux 99.7 2.3E-16 5E-21 124.1 10.9 80 42-122 294-374 (509)
23 PLN03120 nucleic acid binding 99.7 2.4E-16 5.1E-21 113.8 9.2 74 43-121 4-78 (260)
24 PLN03213 repressor of silencin 99.7 2.1E-16 4.6E-21 121.6 9.3 82 40-125 7-90 (759)
25 KOG4207|consensus 99.7 8.7E-17 1.9E-21 111.8 6.3 82 43-125 13-95 (256)
26 KOG0126|consensus 99.7 9.2E-18 2E-22 114.5 1.4 78 41-119 33-111 (219)
27 KOG0124|consensus 99.7 5E-17 1.1E-21 121.2 5.0 75 43-118 113-188 (544)
28 KOG0130|consensus 99.7 1.3E-16 2.9E-21 104.3 6.0 81 39-120 68-149 (170)
29 KOG0108|consensus 99.7 2.1E-16 4.6E-21 121.7 7.9 78 44-122 19-97 (435)
30 KOG0113|consensus 99.7 5.8E-16 1.3E-20 112.5 9.5 88 38-126 96-184 (335)
31 TIGR01648 hnRNP-R-Q heterogene 99.7 4E-16 8.6E-21 124.0 9.5 79 41-121 56-136 (578)
32 KOG0117|consensus 99.7 5.4E-16 1.2E-20 117.7 8.7 79 41-120 81-161 (506)
33 KOG0114|consensus 99.7 1.9E-15 4E-20 94.8 9.5 75 43-121 18-93 (124)
34 KOG0144|consensus 99.6 1.2E-15 2.6E-20 115.5 9.1 89 37-126 28-120 (510)
35 KOG0107|consensus 99.6 9.6E-16 2.1E-20 104.0 7.5 76 41-122 8-84 (195)
36 KOG0148|consensus 99.6 1.8E-15 3.8E-20 108.9 9.2 79 38-123 159-238 (321)
37 TIGR01622 SF-CC1 splicing fact 99.6 1.9E-15 4.2E-20 117.5 9.8 78 42-121 88-166 (457)
38 PLN03121 nucleic acid binding 99.6 2.2E-15 4.8E-20 107.5 9.0 74 41-119 3-77 (243)
39 COG0724 RNA-binding proteins ( 99.6 2.1E-15 4.7E-20 107.5 9.0 78 43-121 115-193 (306)
40 smart00362 RRM_2 RNA recogniti 99.6 4.1E-15 8.9E-20 86.5 8.1 71 45-118 1-72 (72)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.6 7E-15 1.5E-19 115.5 11.0 78 40-123 272-351 (481)
42 smart00360 RRM RNA recognition 99.6 4.7E-15 1E-19 85.9 7.3 70 48-118 1-71 (71)
43 KOG0144|consensus 99.6 1.6E-15 3.5E-20 114.8 5.9 91 32-123 413-504 (510)
44 KOG0147|consensus 99.6 3.2E-15 6.9E-20 115.8 6.1 79 45-124 280-359 (549)
45 KOG0131|consensus 99.6 5.9E-15 1.3E-19 100.8 6.6 81 40-121 6-87 (203)
46 cd00590 RRM RRM (RNA recogniti 99.5 9E-14 2E-18 81.2 8.8 73 45-119 1-74 (74)
47 TIGR01648 hnRNP-R-Q heterogene 99.5 3.7E-14 8E-19 112.9 9.1 72 43-123 233-307 (578)
48 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 6.1E-14 1.3E-18 110.2 8.9 81 41-124 392-481 (481)
49 smart00361 RRM_1 RNA recogniti 99.5 9.1E-14 2E-18 82.4 6.8 61 57-118 2-70 (70)
50 KOG0105|consensus 99.5 8.8E-14 1.9E-18 95.5 6.7 77 41-121 4-81 (241)
51 KOG4208|consensus 99.5 2.3E-13 5E-18 94.5 7.7 80 41-121 47-128 (214)
52 KOG0117|consensus 99.5 1.1E-13 2.4E-18 105.3 6.7 70 45-123 261-331 (506)
53 PF13893 RRM_5: RNA recognitio 99.5 3E-13 6.5E-18 76.6 6.8 55 60-120 1-56 (56)
54 KOG0127|consensus 99.5 2.5E-13 5.5E-18 105.6 7.7 76 43-120 117-193 (678)
55 KOG0124|consensus 99.4 5E-14 1.1E-18 105.3 3.5 81 38-119 205-286 (544)
56 KOG0131|consensus 99.4 1.5E-13 3.3E-18 93.9 5.4 85 37-122 90-176 (203)
57 KOG0127|consensus 99.4 6.9E-13 1.5E-17 103.2 7.1 83 42-125 4-87 (678)
58 KOG0109|consensus 99.4 6.5E-13 1.4E-17 96.6 5.4 71 44-123 3-74 (346)
59 KOG0415|consensus 99.4 9.7E-13 2.1E-17 98.0 5.9 82 41-123 237-319 (479)
60 KOG0146|consensus 99.3 3.3E-12 7.2E-17 92.2 6.9 79 40-120 16-98 (371)
61 KOG4206|consensus 99.3 6.8E-12 1.5E-16 88.3 7.2 74 45-122 11-89 (221)
62 TIGR01642 U2AF_lg U2 snRNP aux 99.3 9.9E-12 2.1E-16 97.9 9.0 73 40-120 172-257 (509)
63 KOG0123|consensus 99.3 6.6E-12 1.4E-16 95.8 7.7 72 45-120 78-150 (369)
64 KOG4212|consensus 99.3 1.4E-11 3E-16 94.1 9.0 75 43-119 44-120 (608)
65 KOG0109|consensus 99.3 3.4E-12 7.4E-17 92.9 5.4 76 41-125 76-152 (346)
66 KOG0533|consensus 99.3 2.5E-11 5.4E-16 87.4 7.9 84 39-124 79-163 (243)
67 KOG4661|consensus 99.3 3.4E-11 7.3E-16 94.6 9.0 83 41-124 403-486 (940)
68 KOG0132|consensus 99.2 1.8E-11 3.8E-16 98.5 7.1 72 43-121 421-493 (894)
69 KOG4205|consensus 99.2 1.3E-11 2.7E-16 92.0 5.3 76 42-118 5-80 (311)
70 KOG0110|consensus 99.2 1.1E-11 2.3E-16 98.8 4.0 80 43-123 613-693 (725)
71 KOG0151|consensus 99.2 7.7E-11 1.7E-15 94.2 8.3 90 38-128 169-262 (877)
72 KOG0226|consensus 99.2 2E-11 4.2E-16 87.5 4.0 78 40-118 187-265 (290)
73 KOG0123|consensus 99.2 1.2E-10 2.5E-15 89.0 7.5 73 44-123 2-75 (369)
74 KOG4212|consensus 99.1 1.5E-10 3.3E-15 88.5 7.3 75 40-120 533-608 (608)
75 KOG0153|consensus 99.1 4.3E-10 9.3E-15 83.6 8.3 79 37-122 222-302 (377)
76 KOG0110|consensus 99.1 3E-10 6.5E-15 90.7 7.2 78 43-121 515-596 (725)
77 KOG1548|consensus 99.0 2.5E-09 5.4E-14 79.6 9.7 82 40-123 131-221 (382)
78 KOG0116|consensus 99.0 1.3E-09 2.8E-14 84.1 8.3 79 43-122 288-366 (419)
79 KOG4209|consensus 99.0 8.9E-10 1.9E-14 79.2 6.0 83 38-122 96-179 (231)
80 KOG4205|consensus 98.9 5E-09 1.1E-13 78.1 7.4 79 43-123 97-176 (311)
81 KOG1190|consensus 98.9 2.7E-08 5.9E-13 75.7 10.0 77 43-125 297-375 (492)
82 KOG0120|consensus 98.9 5.1E-09 1.1E-13 82.0 6.2 80 43-123 289-369 (500)
83 PF04059 RRM_2: RNA recognitio 98.8 4.6E-08 1E-12 61.4 8.0 78 44-122 2-86 (97)
84 KOG1457|consensus 98.8 1.8E-07 3.8E-12 66.4 11.1 80 42-122 33-117 (284)
85 KOG4454|consensus 98.7 7.4E-09 1.6E-13 73.1 2.2 75 43-120 9-84 (267)
86 KOG4660|consensus 98.7 2.8E-08 6.1E-13 77.8 4.8 71 40-116 72-143 (549)
87 KOG0106|consensus 98.7 2E-08 4.3E-13 71.2 3.4 69 44-121 2-71 (216)
88 KOG4211|consensus 98.6 3E-07 6.4E-12 71.4 7.9 78 41-122 8-85 (510)
89 KOG0147|consensus 98.4 1.1E-07 2.5E-12 74.4 2.5 79 40-120 176-255 (549)
90 KOG1995|consensus 98.4 7.3E-07 1.6E-11 66.8 5.1 83 40-123 63-154 (351)
91 KOG4210|consensus 98.4 3.3E-07 7.2E-12 67.9 3.3 79 43-123 184-264 (285)
92 KOG4211|consensus 98.3 4E-06 8.7E-11 65.2 8.5 77 43-121 103-180 (510)
93 COG5175 MOT2 Transcriptional r 98.3 2.2E-06 4.8E-11 64.2 6.5 78 43-121 114-201 (480)
94 KOG1457|consensus 98.2 1.6E-06 3.4E-11 61.7 3.9 61 44-109 211-271 (284)
95 KOG4206|consensus 98.2 1.1E-05 2.3E-10 57.2 8.1 76 40-121 143-220 (221)
96 PF11608 Limkain-b1: Limkain b 98.1 1.6E-05 3.5E-10 48.3 6.4 67 44-121 3-75 (90)
97 KOG1456|consensus 98.1 7.1E-05 1.5E-09 56.9 10.6 79 38-122 282-362 (494)
98 KOG4849|consensus 98.0 9.9E-06 2.1E-10 61.0 4.9 80 42-122 79-162 (498)
99 KOG1190|consensus 98.0 2E-05 4.3E-10 60.4 6.3 78 41-123 412-491 (492)
100 PF08777 RRM_3: RNA binding mo 98.0 2.1E-05 4.6E-10 50.1 5.6 59 43-108 1-59 (105)
101 KOG2314|consensus 97.9 4.9E-05 1.1E-09 60.4 7.8 76 41-118 56-139 (698)
102 KOG3152|consensus 97.7 2.3E-05 5E-10 56.7 2.9 70 44-114 75-157 (278)
103 KOG0106|consensus 97.7 2.3E-05 5E-10 55.8 2.7 68 41-117 97-165 (216)
104 KOG4307|consensus 97.6 0.00082 1.8E-08 54.9 9.9 75 43-119 866-943 (944)
105 KOG0120|consensus 97.6 0.00019 4.1E-09 56.8 6.2 60 59-119 425-488 (500)
106 KOG1855|consensus 97.5 9.8E-05 2.1E-09 56.9 3.9 73 36-109 224-309 (484)
107 KOG1456|consensus 97.5 0.00089 1.9E-08 51.1 8.1 71 52-128 131-204 (494)
108 KOG0112|consensus 97.4 0.00047 1E-08 57.4 6.6 78 39-123 451-531 (975)
109 KOG0128|consensus 97.4 7.1E-05 1.5E-09 61.7 1.4 78 43-122 736-814 (881)
110 KOG1365|consensus 97.4 0.00035 7.5E-09 53.5 5.0 73 43-117 161-237 (508)
111 KOG0128|consensus 97.4 1.6E-05 3.4E-10 65.4 -2.5 67 44-111 668-735 (881)
112 KOG1548|consensus 97.3 0.00093 2E-08 50.4 6.5 72 43-119 265-348 (382)
113 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00051 1.1E-08 38.3 3.9 52 44-103 2-53 (53)
114 KOG1365|consensus 97.2 0.0011 2.4E-08 50.8 6.4 74 45-120 282-359 (508)
115 KOG1996|consensus 97.1 0.0013 2.8E-08 48.8 5.7 63 58-121 301-365 (378)
116 KOG0129|consensus 97.1 0.0035 7.5E-08 49.5 7.9 53 43-96 259-317 (520)
117 KOG2253|consensus 97.0 0.00068 1.5E-08 54.8 3.8 69 40-118 37-106 (668)
118 KOG2193|consensus 97.0 0.0006 1.3E-08 52.8 3.2 70 44-120 2-73 (584)
119 KOG2068|consensus 97.0 0.0003 6.5E-09 52.7 1.3 79 44-123 78-163 (327)
120 PF08952 DUF1866: Domain of un 96.9 0.0041 8.9E-08 41.7 6.2 58 59-126 52-110 (146)
121 KOG4307|consensus 96.9 0.0017 3.8E-08 53.1 5.1 77 41-119 432-510 (944)
122 KOG0129|consensus 96.8 0.0046 9.9E-08 48.9 6.3 62 42-104 369-431 (520)
123 KOG0115|consensus 96.7 0.0019 4.1E-08 47.0 3.7 63 44-108 32-94 (275)
124 PF08675 RNA_bind: RNA binding 96.6 0.031 6.6E-07 34.1 7.8 53 45-107 11-63 (87)
125 PF10309 DUF2414: Protein of u 96.3 0.022 4.8E-07 32.8 5.5 56 42-106 4-62 (62)
126 KOG2202|consensus 96.2 0.0016 3.5E-08 47.2 0.7 61 58-120 83-145 (260)
127 KOG2416|consensus 95.8 0.0081 1.7E-07 48.4 3.0 76 40-122 441-521 (718)
128 KOG0105|consensus 95.6 0.052 1.1E-06 38.1 5.9 59 43-109 115-173 (241)
129 PF05172 Nup35_RRM: Nup53/35/4 95.4 0.069 1.5E-06 33.7 5.5 77 43-122 6-91 (100)
130 KOG0112|consensus 95.3 0.0038 8.3E-08 52.2 -0.5 77 42-120 371-448 (975)
131 KOG4676|consensus 95.1 0.053 1.1E-06 41.9 5.0 77 45-123 9-90 (479)
132 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.14 2.9E-06 35.6 5.9 68 41-109 5-78 (176)
133 PF04847 Calcipressin: Calcipr 94.5 0.14 3E-06 35.9 5.6 62 56-124 8-72 (184)
134 KOG2591|consensus 94.4 0.12 2.6E-06 41.7 5.7 73 41-121 173-250 (684)
135 PF03880 DbpA: DbpA RNA bindin 94.4 0.38 8.2E-06 28.3 6.7 64 45-119 2-73 (74)
136 KOG2135|consensus 94.4 0.021 4.5E-07 45.0 1.4 73 44-124 373-447 (526)
137 KOG4574|consensus 94.3 0.024 5.3E-07 47.5 1.7 74 45-125 300-376 (1007)
138 KOG2193|consensus 93.8 0.0023 5E-08 49.7 -4.7 73 43-120 80-154 (584)
139 KOG4660|consensus 93.4 0.18 4E-06 40.4 5.0 55 67-122 413-472 (549)
140 KOG4210|consensus 93.0 0.045 9.7E-07 40.8 1.1 81 42-123 87-168 (285)
141 KOG4285|consensus 91.3 2.4 5.2E-05 32.0 8.3 63 48-118 202-265 (350)
142 PF15023 DUF4523: Protein of u 91.3 0.85 1.8E-05 30.8 5.4 73 40-120 83-159 (166)
143 PF11767 SET_assoc: Histone ly 88.1 2.7 5.8E-05 24.4 5.3 55 53-117 10-65 (66)
144 KOG4454|consensus 85.9 0.17 3.6E-06 36.4 -0.7 83 42-126 79-177 (267)
145 PF07576 BRAP2: BRCA1-associat 80.6 12 0.00027 23.9 8.6 64 43-109 12-77 (110)
146 PF10567 Nab6_mRNP_bdg: RNA-re 74.6 15 0.00032 27.7 6.0 82 39-121 11-106 (309)
147 KOG4410|consensus 73.3 19 0.00042 27.2 6.4 49 41-95 328-377 (396)
148 KOG2318|consensus 72.1 19 0.00042 29.7 6.6 70 42-112 173-295 (650)
149 PF03468 XS: XS domain; Inter 72.1 8.5 0.00018 24.8 3.9 45 55-102 29-73 (116)
150 KOG2891|consensus 67.5 5.3 0.00012 30.0 2.5 22 55-76 173-194 (445)
151 COG0724 RNA-binding proteins ( 65.7 9.5 0.00021 26.5 3.5 54 39-92 221-274 (306)
152 KOG0804|consensus 63.3 49 0.0011 26.6 7.1 64 43-109 74-138 (493)
153 PF15513 DUF4651: Domain of un 63.0 21 0.00044 20.5 3.8 19 58-76 9-27 (62)
154 PF07292 NID: Nmi/IFP 35 domai 62.6 6.5 0.00014 24.2 1.8 25 41-65 50-74 (88)
155 KOG4483|consensus 61.0 22 0.00048 28.1 4.8 56 42-105 390-446 (528)
156 KOG4365|consensus 59.2 1.7 3.7E-05 34.4 -1.3 78 44-123 4-82 (572)
157 PF08206 OB_RNB: Ribonuclease 57.5 3.7 7.9E-05 22.9 0.1 33 83-115 6-39 (58)
158 KOG4008|consensus 45.0 16 0.00034 26.8 1.7 36 38-73 35-70 (261)
159 KOG2295|consensus 44.8 3.5 7.6E-05 33.6 -1.7 72 42-114 230-302 (648)
160 PF09707 Cas_Cas2CT1978: CRISP 42.1 57 0.0012 19.9 3.6 49 43-94 25-73 (86)
161 PF11411 DNA_ligase_IV: DNA li 41.6 16 0.00036 18.5 1.0 16 53-68 19-34 (36)
162 PF14026 DUF4242: Protein of u 37.8 87 0.0019 18.5 8.3 66 46-115 3-75 (77)
163 COG1839 Uncharacterized conser 35.4 1.4E+02 0.0031 20.2 6.4 85 38-126 10-95 (162)
164 PHA01632 hypothetical protein 34.4 28 0.00062 19.5 1.3 22 45-66 18-39 (64)
165 smart00596 PRE_C2HC PRE_C2HC d 32.7 1E+02 0.0022 18.1 3.5 57 59-119 3-61 (69)
166 PF03439 Spt5-NGN: Early trans 32.1 31 0.00068 20.6 1.4 26 83-109 42-67 (84)
167 TIGR01873 cas_CT1978 CRISPR-as 31.3 38 0.00082 20.8 1.6 49 43-94 25-74 (87)
168 PRK11558 putative ssRNA endonu 30.0 78 0.0017 19.8 2.9 50 43-95 27-76 (97)
169 PF05189 RTC_insert: RNA 3'-te 29.3 1.4E+02 0.0031 18.3 4.3 47 46-92 13-64 (103)
170 PF02617 ClpS: ATP-dependent C 29.1 74 0.0016 18.8 2.7 33 85-118 47-81 (82)
171 PF04008 Adenosine_kin: Adenos 28.9 1.2E+02 0.0026 20.6 3.8 84 39-126 4-88 (155)
172 KOG4676|consensus 28.7 9.9 0.00021 29.9 -1.5 46 44-93 152-197 (479)
173 PF04026 SpoVG: SpoVG; InterP 27.0 1.5E+02 0.0033 17.9 3.8 25 70-94 3-27 (84)
174 PF07530 PRE_C2HC: Associated 26.5 1.4E+02 0.003 17.2 3.8 59 59-121 3-63 (68)
175 PF04472 DUF552: Protein of un 26.4 63 0.0014 18.6 2.0 30 97-126 35-67 (73)
176 PF13046 DUF3906: Protein of u 25.5 1.1E+02 0.0025 17.6 2.8 34 55-90 30-63 (64)
177 COG0030 KsgA Dimethyladenosine 25.0 85 0.0018 23.2 2.8 34 45-78 97-130 (259)
178 PRK11901 hypothetical protein; 24.9 3.3E+02 0.0071 21.0 6.8 57 50-109 249-307 (327)
179 cd00027 BRCT Breast Cancer Sup 24.4 95 0.0021 16.3 2.5 26 44-69 2-27 (72)
180 PF14401 RLAN: RimK-like ATPgr 23.2 2.1E+02 0.0045 19.3 4.3 50 44-93 88-138 (153)
181 PRK11230 glycolate oxidase sub 22.9 4E+02 0.0087 21.6 6.5 65 41-107 187-255 (499)
182 PRK15464 cold shock-like prote 22.2 47 0.001 19.3 0.9 10 85-94 16-25 (70)
183 KOG4019|consensus 21.6 1.9E+02 0.0041 20.4 3.8 78 43-127 10-94 (193)
184 PRK15463 cold shock-like prote 21.4 52 0.0011 19.1 0.9 10 85-94 16-25 (70)
185 COG5638 Uncharacterized conser 21.4 1.1E+02 0.0024 24.5 2.9 36 41-76 144-184 (622)
186 KOG1148|consensus 21.3 2.6E+02 0.0056 23.7 5.1 70 53-122 231-322 (764)
187 KOG4840|consensus 21.0 1.9E+02 0.004 21.5 3.8 67 44-115 38-110 (299)
188 PF00054 Laminin_G_1: Laminin 20.9 35 0.00075 21.9 0.1 10 43-52 92-101 (131)
189 PRK09937 stationary phase/star 20.8 56 0.0012 19.2 1.0 9 84-92 12-20 (74)
190 PF11215 DUF3010: Protein of u 20.2 1.1E+02 0.0025 20.4 2.5 53 50-108 36-94 (138)
191 PRK09507 cspE cold shock prote 20.2 54 0.0012 18.9 0.8 8 85-92 15-22 (69)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.87 E-value=2.1e-21 Score=130.39 Aligned_cols=83 Identities=27% Similarity=0.330 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||++++|++|+++|++||.|.+++++.|+.|++++|||||+|.+.+ +|+.|++.||+. ++|+.|+|.
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e-~A~~Al~~lng~~i~Gr~l~V~ 109 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEG-AATAAISEMDGKELNGRHIRVN 109 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHHHcCCCEECCEEEEEE
Confidence 345779999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|.+..
T Consensus 110 ~a~~~ 114 (144)
T PLN03134 110 PANDR 114 (144)
T ss_pred eCCcC
Confidence 98754
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.86 E-value=3.4e-21 Score=145.08 Aligned_cols=82 Identities=30% Similarity=0.529 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
..+.+|||+|||+++++++|+++|++||.|.+++++.|+.||+++|||||+|++.+ +|..|++.|||+ ++||.|+|+|
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~-~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYD-EAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHH-HHHHHHHHhCCCEECCeEEEEEE
Confidence 33558999999999999999999999999999999999999999999999997777 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
++..
T Consensus 346 ~~~~ 349 (352)
T TIGR01661 346 KTNK 349 (352)
T ss_pred ccCC
Confidence 9853
No 3
>KOG0122|consensus
Probab=99.84 E-value=5.1e-20 Score=130.29 Aligned_cols=82 Identities=21% Similarity=0.338 Sum_probs=78.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
.+.++|-|.||+.+++|++|+++|.+||.|.++.+.+|+.||.++|||||.|++.+ +|.+||+.|||+ +.+-.|+|.|
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRd-dA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRD-DAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHH-HHHHHHHHccCcccceEEEEEEe
Confidence 35678999999999999999999999999999999999999999999999998888 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+||.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9986
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.82 E-value=1.5e-19 Score=136.58 Aligned_cols=84 Identities=20% Similarity=0.287 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
......++|||+|||++++|++|+++|+.||+|.+|+++.|+.|++++|||||+|.+.+ +|++|++.||+. +.+++|+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e-~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEA-DSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHH-HHHHHHHHcCCCccCCceee
Confidence 34566889999999999999999999999999999999999999999999999997776 999999999999 9999999
Q ss_pred EEeccc
Q psy8615 117 PSFNTY 122 (128)
Q Consensus 117 V~~~~~ 122 (128)
|.|.++
T Consensus 181 V~~a~p 186 (346)
T TIGR01659 181 VSYARP 186 (346)
T ss_pred eecccc
Confidence 999875
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.82 E-value=7.1e-20 Score=137.90 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=76.1
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||.+++|++|+++|++||+|.+|+++.|+.+|+++|||||+|.+.+ +|.+|++.|||. ++|+.|+|.|.+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~-~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPE-DAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHH-HHHHHHhhcccEEECCeeEEEEeec
Confidence 679999999999999999999999999999999999999999999999997777 999999999999 999999999987
Q ss_pred cc
Q psy8615 122 YV 123 (128)
Q Consensus 122 ~~ 123 (128)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 54
No 6
>KOG0146|consensus
Probab=99.82 E-value=1.8e-20 Score=134.55 Aligned_cols=94 Identities=43% Similarity=0.693 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 30 AVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
...-...+++++++|+|||-.||.+..+.+|...|-+||.|.+.++..|+.|.++|+||||.|++.. .++.||..|||+
T Consensus 272 p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~-SaQaAIqAMNGF 350 (371)
T KOG0146|consen 272 PPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPA-SAQAAIQAMNGF 350 (371)
T ss_pred cchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCch-hHHHHHHHhcch
Confidence 3334556789999999999999999999999999999999999999999999999999999998888 999999999999
Q ss_pred -CCCeEEEEEeccccc
Q psy8615 110 -LGQSFLKPSFNTYVL 124 (128)
Q Consensus 110 -~~~~~l~V~~~~~~~ 124 (128)
+|-|.|||++|+|.=
T Consensus 351 QIGMKRLKVQLKRPkd 366 (371)
T KOG0146|consen 351 QIGMKRLKVQLKRPKD 366 (371)
T ss_pred hhhhhhhhhhhcCccc
Confidence 999999999998753
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.77 E-value=2.3e-18 Score=101.18 Aligned_cols=69 Identities=22% Similarity=0.433 Sum_probs=64.9
Q ss_pred EEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 46 l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
|||+|||.++++++|+++|++||.+..+++..+ .++..+|+|||+|.+.+ +|..|++.++|. ++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~-~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEE-DAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHH-HHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHH-HHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 56999999999997777 999999999999 9999886
No 8
>KOG0145|consensus
Probab=99.77 E-value=4.4e-18 Score=121.92 Aligned_cols=84 Identities=25% Similarity=0.369 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
+...++|.|..||..+++++++.+|+..|+|.+|++++|+-+|++-|||||.|.++. ||++||..|||. +-.|.|||+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~-DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPK-DAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChH-HHHHHHhhhcceeeccceEEEE
Confidence 445789999999999999999999999999999999999999999999999998888 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
|++|+.
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 999864
No 9
>KOG0125|consensus
Probab=99.77 E-value=3.7e-18 Score=125.23 Aligned_cols=81 Identities=22% Similarity=0.301 Sum_probs=76.6
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
..+|+|+|||++..|.||+.+|++||.|.+|+|+... ..+||||||+|++.+ ||++|-++|||. +.||.|+|...|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~-dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPA-DADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChh-hHHHHHHHhhcceeeceEEEEeccc
Confidence 4689999999999999999999999999999999876 468999999999888 999999999999 999999999999
Q ss_pred ccccc
Q psy8615 122 YVLMN 126 (128)
Q Consensus 122 ~~~~~ 126 (128)
..+||
T Consensus 173 arV~n 177 (376)
T KOG0125|consen 173 ARVHN 177 (376)
T ss_pred hhhcc
Confidence 99987
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.76 E-value=5.2e-18 Score=135.13 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=77.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.++++..|+.+|+++|||||+|++.+ +|.+|++.||++ ++|+.|+|.+
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e-~A~kAI~amNg~elgGr~LrV~k 280 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ-SQSEAIASMNLFDLGGQYLRVGK 280 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH-HHHHHHHHhCCCeeCCeEEEEEe
Confidence 34579999999999999999999999999999999999999999999999998777 999999999999 9999999999
Q ss_pred cccccc
Q psy8615 120 NTYVLM 125 (128)
Q Consensus 120 ~~~~~~ 125 (128)
......
T Consensus 281 Ai~pP~ 286 (612)
T TIGR01645 281 CVTPPD 286 (612)
T ss_pred cCCCcc
Confidence 876443
No 11
>KOG0121|consensus
Probab=99.75 E-value=4.7e-18 Score=110.05 Aligned_cols=79 Identities=8% Similarity=0.127 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++||||||++-++|++|.++|+++|.|+++-+-.|+.+-...|||||+|...+ +|+.|++-++|. +.+++|+|.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~-dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRD-DAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecch-hHHHHHHHhccCcccccceeeec
Confidence 45789999999999999999999999999999999999998889999999999888 999999999999 9999999998
Q ss_pred c
Q psy8615 120 N 120 (128)
Q Consensus 120 ~ 120 (128)
+
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 6
No 12
>KOG0149|consensus
Probab=99.74 E-value=2.6e-18 Score=121.11 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=70.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKPS 118 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V~ 118 (128)
.+..-|+||||+|+|++..++|+..|++||+|.+..++.|+.||++||||||+|.+.+ .|++|++.-|-.++||.-.+.
T Consensus 8 ~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~-aa~rAc~dp~piIdGR~aNcn 86 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAE-AATRACKDPNPIIDGRKANCN 86 (247)
T ss_pred CCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHH-HHHHHhcCCCCcccccccccc
Confidence 3445789999999999999999999999999999999999999999999999998877 999999887777777664443
No 13
>KOG0148|consensus
Probab=99.74 E-value=5.7e-18 Score=121.59 Aligned_cols=80 Identities=29% Similarity=0.442 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
-..+||+.|..+++.++|++.|.+||+|.++++++|..|++++|||||.|-+.+ +|+.||+.|||. ||+|.|+-.|++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~-dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKE-DAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchH-HHHHHHHHhCCeeeccceeeccccc
Confidence 447999999999999999999999999999999999999999999999997777 999999999999 999999999997
Q ss_pred cc
Q psy8615 122 YV 123 (128)
Q Consensus 122 ~~ 123 (128)
.-
T Consensus 141 RK 142 (321)
T KOG0148|consen 141 RK 142 (321)
T ss_pred cC
Confidence 64
No 14
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.74 E-value=8.6e-18 Score=133.89 Aligned_cols=80 Identities=16% Similarity=0.265 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.+++++.|+.||+++|||||+|++.+ +|.+|++.|||. ++|+.|+|.+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e-~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPE-AAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHH-HHHHHHHhcCCeEEecceeeecc
Confidence 34679999999999999999999999999999999999999999999999998777 999999999999 9999999986
Q ss_pred cc
Q psy8615 120 NT 121 (128)
Q Consensus 120 ~~ 121 (128)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=2.3e-17 Score=124.64 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC--eEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ--SFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~--~~l~V 117 (128)
...++|||+|||++++|++|+++|++||.|.+++++.|+.+|+++|||||+|.+.+ +|++||+.||+. +.+ ++|+|
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e-~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKRE-EAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHH-HHHHHHHHhCCCccCCCceeEEE
Confidence 34678999999999999999999999999999999999999999999999997777 999999999998 544 78999
Q ss_pred Eeccc
Q psy8615 118 SFNTY 122 (128)
Q Consensus 118 ~~~~~ 122 (128)
.|.+.
T Consensus 270 ~~a~~ 274 (346)
T TIGR01659 270 RLAEE 274 (346)
T ss_pred EECCc
Confidence 98864
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=6.9e-17 Score=128.70 Aligned_cols=77 Identities=30% Similarity=0.458 Sum_probs=73.5
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.+|||+|||.+++|++|+++|++||.|.+|++.+|+.|++++|||||+|.+.+ +|++|++.+|+. +.|+.|+|.|..
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~-~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPA-DAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHHHhCCCEECCeeEEeeccc
Confidence 37999999999999999999999999999999999999999999999997777 999999999999 999999999975
No 17
>KOG0111|consensus
Probab=99.70 E-value=1.6e-17 Score=116.55 Aligned_cols=83 Identities=18% Similarity=0.282 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++||||+|..+++|..|...|-+||.|..++++.|..++++||||||+|+..+ +|..||..||+. |.||.|+|.
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aE-DAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAE-DAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccc-hhHHHhhcCchhhhcceeEEEe
Confidence 345779999999999999999999999999999999999999999999999998887 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|++|.
T Consensus 86 ~AkP~ 90 (298)
T KOG0111|consen 86 LAKPE 90 (298)
T ss_pred ecCCc
Confidence 99985
No 18
>KOG0145|consensus
Probab=99.70 E-value=2.4e-16 Score=113.06 Aligned_cols=81 Identities=33% Similarity=0.562 Sum_probs=76.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
..++.|||-||..+.+|.-|-++|++||.|..+++++|..|.+.+|||||.+.+-+ +|..||..|||+ +|+|.|.|+|
T Consensus 276 ~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYd-EAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 276 GGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD-EAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchH-HHHHHHHHhcCccccceEEEEEE
Confidence 34789999999999999999999999999999999999999999999999996666 999999999999 9999999999
Q ss_pred ccc
Q psy8615 120 NTY 122 (128)
Q Consensus 120 ~~~ 122 (128)
++.
T Consensus 355 Ktn 357 (360)
T KOG0145|consen 355 KTN 357 (360)
T ss_pred ecC
Confidence 985
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.70 E-value=9.6e-17 Score=127.86 Aligned_cols=81 Identities=25% Similarity=0.376 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
...+++|||+||++++++++|+++|++||.|.+++++.| .+|+++|||||+|++.+ +|.+|++.|||. ++|++|+|.
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~-~A~~A~~~~~g~~~~gk~l~V~ 359 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPE-EANRAVTEMHGRMLGGKPLYVA 359 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHH-HHHHHHHHhcCCeeCCceeEEE
Confidence 345778999999999999999999999999999999999 56999999999997777 999999999999 999999999
Q ss_pred eccc
Q psy8615 119 FNTY 122 (128)
Q Consensus 119 ~~~~ 122 (128)
|++.
T Consensus 360 ~a~~ 363 (562)
T TIGR01628 360 LAQR 363 (562)
T ss_pred eccC
Confidence 9874
No 20
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.70 E-value=2.2e-16 Score=93.22 Aligned_cols=69 Identities=23% Similarity=0.423 Sum_probs=63.0
Q ss_pred EEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 46 l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
|||+|||+++++++|+++|+.||.|.++++..++. |..+|+|||+|.+.+ +|.+|++.+++. ++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~-~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEE-DAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHH-HHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHH-HHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999988 999999999997766 999999999988 9999875
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.69 E-value=2e-16 Score=123.05 Aligned_cols=80 Identities=23% Similarity=0.372 Sum_probs=75.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||..+++++|+++|++||.|..+.++.++.+|+++|||||+|.+.+ +|..|++.|||+ ++|+.|+|.|.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e-~A~~A~~~l~g~~i~g~~i~v~~a 263 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAE-EAKEALEVMNGFELAGRPIKVGYA 263 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH-HHHHHHHhcCCcEECCEEEEEEEc
Confidence 3689999999999999999999999999999999999999999999999997777 999999999999 99999999996
Q ss_pred cc
Q psy8615 121 TY 122 (128)
Q Consensus 121 ~~ 122 (128)
+.
T Consensus 264 ~~ 265 (457)
T TIGR01622 264 QD 265 (457)
T ss_pred cC
Confidence 53
No 22
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.69 E-value=2.3e-16 Score=124.05 Aligned_cols=80 Identities=14% Similarity=0.223 Sum_probs=75.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||..+++++|+++|+.||.|..+.++.++.+|.++|||||+|.+.+ +|..|++.|||. ++|+.|+|.+.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~-~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPS-VTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHH-HHHHHHHHcCCCEECCeEEEEEEC
Confidence 4579999999999999999999999999999999999999999999999997777 999999999999 99999999997
Q ss_pred cc
Q psy8615 121 TY 122 (128)
Q Consensus 121 ~~ 122 (128)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 53
No 23
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.68 E-value=2.4e-16 Score=113.83 Aligned_cols=74 Identities=5% Similarity=0.016 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||++++|++|+++|+.||.|.+++++.|+. .+|||||+|.+.+ ++..|+. |||. ++|+.|+|.+..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~e-aAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQ-GAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHH-HHHHHHH-hcCCeeCCceEEEEecc
Confidence 57899999999999999999999999999999998864 5799999998777 9999995 9999 999999999986
No 24
>PLN03213 repressor of silencing 3; Provisional
Probab=99.68 E-value=2.1e-16 Score=121.61 Aligned_cols=82 Identities=24% Similarity=0.283 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCH-HHHHHHHHHhcCc-CCCeEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKF-FILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~-~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
+..+.+||||||++++++++|+..|+.||.|.++.++ +.|| ||||||+|.... ++..+||..|||. |.|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 4456899999999999999999999999999999999 5567 999999997762 2789999999999 99999999
Q ss_pred Eecccccc
Q psy8615 118 SFNTYVLM 125 (128)
Q Consensus 118 ~~~~~~~~ 125 (128)
.-+++..+
T Consensus 83 NKAKP~YL 90 (759)
T PLN03213 83 EKAKEHYL 90 (759)
T ss_pred eeccHHHH
Confidence 99887643
No 25
>KOG4207|consensus
Probab=99.68 E-value=8.7e-17 Score=111.80 Aligned_cols=82 Identities=21% Similarity=0.190 Sum_probs=77.5
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
-+.|-|-||.+.++.++|+.+|++||.|-+|.|+.|+.|+.++|||||.|.... +|+.|++.|+|. +.|+.|.|++++
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~-daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKR-DAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecc-hHHHHHHhhcceeeccceeeehhhh
Confidence 457999999999999999999999999999999999999999999999999888 999999999999 999999999988
Q ss_pred cccc
Q psy8615 122 YVLM 125 (128)
Q Consensus 122 ~~~~ 125 (128)
+--+
T Consensus 92 ygr~ 95 (256)
T KOG4207|consen 92 YGRP 95 (256)
T ss_pred cCCC
Confidence 7544
No 26
>KOG0126|consensus
Probab=99.68 E-value=9.2e-18 Score=114.53 Aligned_cols=78 Identities=19% Similarity=0.389 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
.+..-|||||||++.+|.+|--+|++||+|..+.+++|+.||+++||||..|++-- ....|+..|||+ +.||.|+|..
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQR-STILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQR-STILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCcc-ceEEEEeccCCceecceeEEeee
Confidence 34568999999999999999999999999999999999999999999999998877 777899999999 9999999974
No 27
>KOG0124|consensus
Probab=99.67 E-value=5e-17 Score=121.18 Aligned_cols=75 Identities=17% Similarity=0.305 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
-|++|||.|.+++.|+.|+..|.+||+|+++.+.+|+.||+++||+||+|+-++ .|+.|++.|||. +|||.|||.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPE-aAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPE-AAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcH-HHHHHHHHhccccccCcccccc
Confidence 489999999999999999999999999999999999999999999999999888 999999999999 999999997
No 28
>KOG0130|consensus
Probab=99.67 E-value=1.3e-16 Score=104.30 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.+..++.|||.++..+.+|+++.+.|..||+|+.+++.+|+.||..+||+.|+|++.. +|+.|+..+||. |-++.++|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~k-eAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLK-EAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHH-HHHHHHHhccchhhhCCceeE
Confidence 4566899999999999999999999999999999999999999999999999998777 999999999999 88889999
Q ss_pred Eec
Q psy8615 118 SFN 120 (128)
Q Consensus 118 ~~~ 120 (128)
.|.
T Consensus 147 Dw~ 149 (170)
T KOG0130|consen 147 DWC 149 (170)
T ss_pred EEE
Confidence 884
No 29
>KOG0108|consensus
Probab=99.66 E-value=2.1e-16 Score=121.73 Aligned_cols=78 Identities=23% Similarity=0.363 Sum_probs=75.0
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~ 122 (128)
+.+||||+|++++|++|..+|+..|.|.+++++.|+.||+.+||||++|.+.+ ++++|++.|||+ ++|+.|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~-~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEE-TAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchh-hHHHHHHhcCCcccCCceEEeecccc
Confidence 89999999999999999999999999999999999999999999999997766 999999999999 9999999999864
No 30
>KOG0113|consensus
Probab=99.66 E-value=5.8e-16 Score=112.49 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=80.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
..+..-++|||+-|+.+++|..|+..|+.||+|..++++.|+.||+++|||||+|+..- +...|.+..+|. +.|+.|-
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~er-dm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHER-DMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHH-HHHHHHHhccCceecCcEEE
Confidence 33455789999999999999999999999999999999999999999999999997766 999999999999 9999999
Q ss_pred EEeccccccc
Q psy8615 117 PSFNTYVLMN 126 (128)
Q Consensus 117 V~~~~~~~~~ 126 (128)
|.+..-.+|.
T Consensus 175 VDvERgRTvk 184 (335)
T KOG0113|consen 175 VDVERGRTVK 184 (335)
T ss_pred EEeccccccc
Confidence 9998776653
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.66 E-value=4e-16 Score=124.05 Aligned_cols=79 Identities=15% Similarity=0.370 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C-CCeEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L-GQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~-~~~~l~V~ 118 (128)
..+|+|||+|||++++|++|+++|++||.|.+++++.| .+|+++|||||+|.+.+ +|++||+.||++ + .++.|.|+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e-~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKE-EAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHH-HHHHHHHHcCCCeecCCcccccc
Confidence 34799999999999999999999999999999999999 67999999999997777 999999999998 5 57888887
Q ss_pred ecc
Q psy8615 119 FNT 121 (128)
Q Consensus 119 ~~~ 121 (128)
++.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 653
No 32
>KOG0117|consensus
Probab=99.65 E-value=5.4e-16 Score=117.71 Aligned_cols=79 Identities=16% Similarity=0.389 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc--CCCeEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY--LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~~~l~V~ 118 (128)
+.+|.||||.||.++.|++|..+|++.|+|-+++++.|+.+|.+||||||.|.+.+ +|+.||+.||++ --||.|+|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke-~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKE-EAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHH-HHHHHHHHhhCccccCCCEeEEE
Confidence 67999999999999999999999999999999999999999999999999997777 999999999999 577999988
Q ss_pred ec
Q psy8615 119 FN 120 (128)
Q Consensus 119 ~~ 120 (128)
.+
T Consensus 160 ~S 161 (506)
T KOG0117|consen 160 VS 161 (506)
T ss_pred Ee
Confidence 64
No 33
>KOG0114|consensus
Probab=99.65 E-value=1.9e-15 Score=94.76 Aligned_cols=75 Identities=17% Similarity=0.369 Sum_probs=68.9
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.+-|||.|||++++.++..++|++||.|+.+++-..+.| +|-|||.|++-. +|.+|+++|+|+ +.++.|.|-|=+
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~-dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIF-DAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhh-hHHHHHHHhcccccCCceEEEEecC
Confidence 567999999999999999999999999999999888754 899999998877 999999999999 999999997754
No 34
>KOG0144|consensus
Probab=99.64 E-value=1.2e-15 Score=115.48 Aligned_cols=89 Identities=16% Similarity=0.224 Sum_probs=77.0
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc--CCC--
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY--LGQ-- 112 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~-- 112 (128)
...+.+.-++|||.||..++|.||+.+|++||.|.+|.+++|+.||.++|||||.|.+.+ +|.+|+..|+.. +-|
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk-~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRK-EADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHH-HHHHHHHHhhcccccCCCC
Confidence 333455669999999999999999999999999999999999999999999999998777 999999999986 433
Q ss_pred eEEEEEeccccccc
Q psy8615 113 SFLKPSFNTYVLMN 126 (128)
Q Consensus 113 ~~l~V~~~~~~~~~ 126 (128)
.++.|.|+---..|
T Consensus 107 ~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 107 HPVQVKYADGERER 120 (510)
T ss_pred cceeecccchhhhc
Confidence 78899887654444
No 35
>KOG0107|consensus
Probab=99.63 E-value=9.6e-16 Score=104.03 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
+-.++||||||+.++++.+|+.+|..||++.++-|-.. ..|||||+|+++. +|+.|+..|+|. +.|..|+|.+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~R-DA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPR-DAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcc-cHHHHHhhcCCccccCceEEEEe
Confidence 34789999999999999999999999999999876654 3799999999999 999999999999 9999999998
Q ss_pred ccc
Q psy8615 120 NTY 122 (128)
Q Consensus 120 ~~~ 122 (128)
.+-
T Consensus 82 S~G 84 (195)
T KOG0107|consen 82 STG 84 (195)
T ss_pred ecC
Confidence 763
No 36
>KOG0148|consensus
Probab=99.63 E-value=1.8e-15 Score=108.87 Aligned_cols=79 Identities=16% Similarity=0.379 Sum_probs=73.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
..+++.|+|||||++..++|+++++.|++||.|.+|++-.| +||+||.|++++ .|..||..+|+. ++|+..|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkE-aAahAIv~mNntei~G~~Vk 231 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKE-AAAHAIVQMNNTEIGGQLVR 231 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchh-hHHHHHHHhcCceeCceEEE
Confidence 34578999999999999999999999999999999999877 679999998888 999999999999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
-+|.|-.
T Consensus 232 CsWGKe~ 238 (321)
T KOG0148|consen 232 CSWGKEG 238 (321)
T ss_pred EeccccC
Confidence 9998853
No 37
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.63 E-value=1.9e-15 Score=117.52 Aligned_cols=78 Identities=17% Similarity=0.207 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||.++++++|+++|++||.|.+|+++.|+.+|+++|||||+|.+.+ +|.+|+. |+|. +.|++|.|.+.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e-~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVE-SVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHH-HHHHHHH-hCCCEECCeeeEEeec
Confidence 3678999999999999999999999999999999999999999999999997776 9999996 8888 99999999885
Q ss_pred c
Q psy8615 121 T 121 (128)
Q Consensus 121 ~ 121 (128)
.
T Consensus 166 ~ 166 (457)
T TIGR01622 166 Q 166 (457)
T ss_pred c
Confidence 4
No 38
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.63 E-value=2.2e-15 Score=107.46 Aligned_cols=74 Identities=14% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
+.+++|||+||+++++|++|+++|+.||.|.+|++++|. +.+|||||+|.++. .++.|+ .|+|. |.+++|.|.-
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~-aaetAl-lLnGa~l~d~~I~It~ 77 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAY-ALETAV-LLSGATIVDQRVCITR 77 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHH-HHHHHH-hcCCCeeCCceEEEEe
Confidence 357899999999999999999999999999999999884 45689999997777 888887 79998 9998888765
No 39
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=2.1e-15 Score=107.55 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||.++++++|+++|.+||.+.++.+..|+.+|+++|||||+|.+.+ ++..|++.+++. +.|+.|+|.+..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~-~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEE-SAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHH-HHHHHHHHcCCCeECCceeEeeccc
Confidence 689999999999999999999999999999999999989999999999997777 999999999999 999999999965
No 40
>smart00362 RRM_2 RNA recognition motif.
Probab=99.62 E-value=4.1e-15 Score=86.49 Aligned_cols=71 Identities=30% Similarity=0.470 Sum_probs=65.3
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
+|||+|||..+++++|+++|.+||.+..+++..++ +.++|+|||+|.+.+ +|..|++.+++. +.|+.|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~-~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEE-DAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHH-HHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988776 788999999998877 999999999998 999998874
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.61 E-value=7e-15 Score=115.54 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 40 GPEGANLFIYHLPP-EFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.+.+++|||+|||+ .+++++|+++|++||.|.+++++.++ +|||||+|.+.+ +|..|++.|||. +.|+.|+|
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~-~A~~Ai~~lng~~l~g~~l~v 345 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPY-QAQLALTHLNGVKLFGKPLRV 345 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHH-HHHHHHHHhCCCEECCceEEE
Confidence 34578999999998 69999999999999999999998874 689999998777 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
++++..
T Consensus 346 ~~s~~~ 351 (481)
T TIGR01649 346 CPSKQQ 351 (481)
T ss_pred EEcccc
Confidence 998653
No 42
>smart00360 RRM RNA recognition motif.
Probab=99.60 E-value=4.7e-15 Score=85.92 Aligned_cols=70 Identities=26% Similarity=0.416 Sum_probs=64.9
Q ss_pred EcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 48 IYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 48 V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
|+|||..+++++|+.+|.+||.+..+.+..++.++.++|+|||+|.+.+ +|..|++.+++. ++|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~-~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEE-DAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHH-HHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999999999999998888999999999997777 999999999998 999998874
No 43
>KOG0144|consensus
Probab=99.59 E-value=1.6e-15 Score=114.81 Aligned_cols=91 Identities=47% Similarity=0.741 Sum_probs=85.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 32 ~~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
.....+.+++++.++||.+||.+.-+.+|-..|.+||.|.+.++-.|+.|+-+++|+||.|++.. +|..||..|||+ +
T Consensus 413 ~~~~~q~eGpeGanlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~-sa~~aI~amngfQi 491 (510)
T KOG0144|consen 413 MVGNGQVEGPEGANLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQ-SAQNAISAMNGFQI 491 (510)
T ss_pred cccCccccCCCccceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchh-hhHHHHHHhcchhh
Confidence 34556778899999999999999999999999999999999999999999999999999999999 999999999999 9
Q ss_pred CCeEEEEEecccc
Q psy8615 111 GQSFLKPSFNTYV 123 (128)
Q Consensus 111 ~~~~l~V~~~~~~ 123 (128)
|.|.|+|+.+...
T Consensus 492 g~KrlkVQlk~~~ 504 (510)
T KOG0144|consen 492 GSKRLKVQLKRDR 504 (510)
T ss_pred ccccceEEeeecc
Confidence 9999999998754
No 44
>KOG0147|consensus
Probab=99.57 E-value=3.2e-15 Score=115.77 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=74.7
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecccc
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTYV 123 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~~ 123 (128)
+||||||+++++|++|+.+|++||.|..+.+.+|..||+++||||++|...+ +|..|++.|||+ +.|+.|+|+..+..
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~-~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKE-DARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHH-HHHHHHHHhccceecCceEEEEEeeee
Confidence 3999999999999999999999999999999999999999999999998877 999999999999 99999999987765
Q ss_pred c
Q psy8615 124 L 124 (128)
Q Consensus 124 ~ 124 (128)
+
T Consensus 359 ~ 359 (549)
T KOG0147|consen 359 V 359 (549)
T ss_pred c
Confidence 3
No 45
>KOG0131|consensus
Probab=99.57 E-value=5.9e-15 Score=100.78 Aligned_cols=81 Identities=16% Similarity=0.164 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
.....+||||||+..++++.|.++|-+.|+|.+++++.|+.|...+||||++|.+.+ +|+-|++.||.. |-||+|+|.
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~ee-dadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEE-DADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechh-hhHHHHHHHHHHHhcCceeEEE
Confidence 344679999999999999999999999999999999999999999999999996666 999999999987 999999998
Q ss_pred ecc
Q psy8615 119 FNT 121 (128)
Q Consensus 119 ~~~ 121 (128)
-..
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 765
No 46
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.54 E-value=9e-14 Score=81.16 Aligned_cols=73 Identities=32% Similarity=0.525 Sum_probs=67.1
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
+|+|+|||..+++++++++|..||.+..+.+..++. +..+|+|||+|.+.+ +|..|++.+++. +.|+.+.|.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~-~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEE-DAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHH-HHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998876 477999999997777 999999999999 9999999875
No 47
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=3.7e-14 Score=112.90 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCC--CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPF--GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~--G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
..+|||+|||++++|++|+++|++| |.|.+|+++ ++||||+|++.+ +|++|++.||+. ++|+.|+|+|
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e-~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDRE-DAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHH-HHHHHHHHhCCCEECCEEEEEEE
Confidence 4689999999999999999999999 999998765 459999998777 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+++.
T Consensus 304 Akp~ 307 (578)
T TIGR01648 304 AKPV 307 (578)
T ss_pred ccCC
Confidence 9875
No 48
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.52 E-value=6.1e-14 Score=110.23 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=69.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCc--eEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE---
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGT--VLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF--- 114 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~--i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~--- 114 (128)
+...+|||+|||+++++++|+++|+.||. +..+++..++ +..+|+|||+|++.+ +|..|+..||++ ++++.
T Consensus 392 ~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~~--~~~~~~gfVeF~~~e-~A~~Al~~ln~~~l~~~~~~~ 468 (481)
T TIGR01649 392 PPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFFPKD--NERSKMGLLEWESVE-DAVEALIALNHHQLNEPNGSA 468 (481)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEecCC--CCcceeEEEEcCCHH-HHHHHHHHhcCCccCCCCCCc
Confidence 34568999999999999999999999998 8888876443 235899999997766 999999999999 98874
Q ss_pred ---EEEEeccccc
Q psy8615 115 ---LKPSFNTYVL 124 (128)
Q Consensus 115 ---l~V~~~~~~~ 124 (128)
|+|+|+++.+
T Consensus 469 ~~~lkv~fs~~~~ 481 (481)
T TIGR01649 469 PYHLKVSFSTSRI 481 (481)
T ss_pred cceEEEEeccCCC
Confidence 9999999864
No 49
>smart00361 RRM_1 RNA recognition motif.
Probab=99.50 E-value=9.1e-14 Score=82.42 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=54.8
Q ss_pred HHHHHhhhc----CCCceEEEE-EEecCCC--CCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 57 DADLASMFG----PFGTVLSAK-VFIDKQN--NRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 57 e~~l~~~f~----~~G~i~~~~-~~~~~~t--g~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
+++|+++|+ +||.|.++. +..++.+ ++++||+||+|.+.+ +|..|++.|||. ++|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~-dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSE-DAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHH-HHHHHHHHhCCCEECCEEEEeC
Confidence 678889998 999999995 8888877 999999999997777 999999999999 999999864
No 50
>KOG0105|consensus
Probab=99.49 E-value=8.8e-14 Score=95.54 Aligned_cols=77 Identities=12% Similarity=0.216 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||||||.++.|.+++++|.+||.|+.|.+-..+ ...+||||+|+++- +|+.||..-+|+ ++|..|+|.|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~R-DAeDAiygRdGYdydg~rLRVEf 79 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPR-DAEDAIYGRDGYDYDGCRLRVEF 79 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCcc-chhhhhhcccccccCcceEEEEe
Confidence 346799999999999999999999999999999875543 34679999999999 999999999999 9999999998
Q ss_pred cc
Q psy8615 120 NT 121 (128)
Q Consensus 120 ~~ 121 (128)
..
T Consensus 80 pr 81 (241)
T KOG0105|consen 80 PR 81 (241)
T ss_pred cc
Confidence 64
No 51
>KOG4208|consensus
Probab=99.47 E-value=2.3e-13 Score=94.54 Aligned_cols=80 Identities=23% Similarity=0.384 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCC-CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPF-GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~-G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....-+|+..+|..+.+..+..+|.+| |.+++.++.+.+.||.++|||||+|++.+ .|..|-+.||+| ++++.|++.
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~e-VA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEE-VAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHH-HHHHHHHHhhhhhhhhheeeeE
Confidence 345578999999999999999999988 78888899899999999999999998887 999999999999 999999987
Q ss_pred ecc
Q psy8615 119 FNT 121 (128)
Q Consensus 119 ~~~ 121 (128)
+=-
T Consensus 126 vmp 128 (214)
T KOG4208|consen 126 VMP 128 (214)
T ss_pred EeC
Confidence 643
No 52
>KOG0117|consensus
Probab=99.47 E-value=1.1e-13 Score=105.27 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=66.5
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecccc
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTYV 123 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~~ 123 (128)
.|||.||+.++||+.|+++|.+||.|.+|+.++| ||||.|...+ +|.+|++.+||+ +.|..|.|.++||+
T Consensus 261 vLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~-davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 261 VLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAERE-DAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchH-HHHHHHHHhcCceecCceEEEEecCCh
Confidence 6999999999999999999999999999988755 9999998888 999999999999 99999999999986
No 53
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=3e-13 Score=76.64 Aligned_cols=55 Identities=25% Similarity=0.329 Sum_probs=48.3
Q ss_pred HHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 60 LASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 60 l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
|+++|++||.|.++.+..+. ++++||+|++.+ +|..|++.|||. ++|++|+|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~-~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVE-DAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHH-HHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHH-HHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886553 689999997777 999999999999 99999999985
No 54
>KOG0127|consensus
Probab=99.45 E-value=2.5e-13 Score=105.58 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=71.4
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
.++|.|.||||.+.+.+|+.+|+.||.|.++.|+..+. |+.+|||||.|.... +|..|++.+|+. ++|+++-|.|+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~-dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKK-DAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHH-HHHHHHHhccCceecCceeEEeee
Confidence 67999999999999999999999999999999998777 777899999997777 999999999999 99999999996
No 55
>KOG0124|consensus
Probab=99.45 E-value=5e-14 Score=105.29 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=74.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
.+.....+|||..++++.+|+||+.+|+.||+|.+|++-+++.++.++||||++|.+.. ....||..||-+ +||+.|+
T Consensus 205 eeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~q-s~~eAiasMNlFDLGGQyLR 283 (544)
T KOG0124|consen 205 EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ-SQSEAIASMNLFDLGGQYLR 283 (544)
T ss_pred HHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecccc-chHHHhhhcchhhcccceEe
Confidence 33455679999999999999999999999999999999999998999999999998887 888899999999 9999999
Q ss_pred EEe
Q psy8615 117 PSF 119 (128)
Q Consensus 117 V~~ 119 (128)
|.-
T Consensus 284 VGk 286 (544)
T KOG0124|consen 284 VGK 286 (544)
T ss_pred ccc
Confidence 853
No 56
>KOG0131|consensus
Probab=99.44 E-value=1.5e-13 Score=93.91 Aligned_cols=85 Identities=27% Similarity=0.342 Sum_probs=75.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEE-EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS-AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~-~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
+.....+.++||+||.++++|..|.+.|+.||.+.+ -++.+|+.||.++||||+.|.+.+ .+.+|+..+||. +++++
T Consensus 90 ~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfe-asd~ai~s~ngq~l~nr~ 168 (203)
T KOG0131|consen 90 QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFE-ASDAAIGSMNGQYLCNRP 168 (203)
T ss_pred cccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHH-HHHHHHHHhccchhcCCc
Confidence 344455789999999999999999999999998876 488999999999999999996666 999999999999 99999
Q ss_pred EEEEeccc
Q psy8615 115 LKPSFNTY 122 (128)
Q Consensus 115 l~V~~~~~ 122 (128)
+.|+|...
T Consensus 169 itv~ya~k 176 (203)
T KOG0131|consen 169 ITVSYAFK 176 (203)
T ss_pred eEEEEEEe
Confidence 99998753
No 57
>KOG0127|consensus
Probab=99.40 E-value=6.9e-13 Score=103.20 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=76.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
.+.+|||++||++++.++|.++|+.+|+|..|.++.++.++.+||||||.|.- ++++++|+...++. ++|+.|.|.+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam-~ED~qrA~~e~~~~kf~Gr~l~v~~A 82 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAM-EEDVQRALAETEQSKFEGRILNVDPA 82 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeeh-HhHHHHHHHHhhcCcccceecccccc
Confidence 35899999999999999999999999999999999999999999999999954 45999999999998 99999999998
Q ss_pred ccccc
Q psy8615 121 TYVLM 125 (128)
Q Consensus 121 ~~~~~ 125 (128)
++..-
T Consensus 83 ~~R~r 87 (678)
T KOG0127|consen 83 KKRAR 87 (678)
T ss_pred ccccc
Confidence 87643
No 58
>KOG0109|consensus
Probab=99.38 E-value=6.5e-13 Score=96.61 Aligned_cols=71 Identities=23% Similarity=0.364 Sum_probs=65.5
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~ 122 (128)
.+|||||||.++++.+|+.+|++||+|.+|.|++. ||||..++.. .++.||+.||++ |.|..|+|.-+|.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdkt-aaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKT-AAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeeccc-ccHHHHhhcccceecceEEEEEeccc
Confidence 47999999999999999999999999999999854 9999998888 999999999999 9999999988775
Q ss_pred c
Q psy8615 123 V 123 (128)
Q Consensus 123 ~ 123 (128)
-
T Consensus 74 K 74 (346)
T KOG0109|consen 74 K 74 (346)
T ss_pred c
Confidence 4
No 59
>KOG0415|consensus
Probab=99.37 E-value=9.7e-13 Score=98.03 Aligned_cols=82 Identities=24% Similarity=0.395 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
++...|||..|.+.+++++|.-+|+.||.|.+|.+++|..||.+-.|+||+|++.+ ++++|.=+|++. +.++.|.|.|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~e-scE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKE-SCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchh-hHHHHHhhhcceeeccceEEeeh
Confidence 55678999999999999999999999999999999999999999999999998877 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+..+
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 8654
No 60
>KOG0146|consensus
Probab=99.34 E-value=3.3e-12 Score=92.24 Aligned_cols=79 Identities=22% Similarity=0.312 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc--CCC--eEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY--LGQ--SFL 115 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~--~~l 115 (128)
+.+.++||||-|...-.|+|++.+|.+||+|.+|.+.+.+. |.+|||+||.|++.. +|..||..|+|. +-| ..|
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~-eAqaAI~aLHgSqTmpGASSSL 93 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHA-EAQAAINALHGSQTMPGASSSL 93 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccch-HHHHHHHHhcccccCCCCccce
Confidence 34678999999999999999999999999999999999987 999999999998888 999999999996 544 568
Q ss_pred EEEec
Q psy8615 116 KPSFN 120 (128)
Q Consensus 116 ~V~~~ 120 (128)
.|.|.
T Consensus 94 VVK~A 98 (371)
T KOG0146|consen 94 VVKFA 98 (371)
T ss_pred EEEec
Confidence 88875
No 61
>KOG4206|consensus
Probab=99.31 E-value=6.8e-12 Score=88.30 Aligned_cols=74 Identities=14% Similarity=0.335 Sum_probs=66.8
Q ss_pred eEEEcCCCCCCCHHHHHh----hhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 45 NLFIYHLPPEFSDADLAS----MFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~----~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
+|||.||.+.+..++|+. +|++||.|.+|... .|.+.||-|||.|.+.+ .|..|+..|+|+ +-||+++|+|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~-~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETE-AASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChh-HHHHHHHHhcCCcccCchhheec
Confidence 999999999999998887 99999999987654 34788999999997777 999999999999 9999999999
Q ss_pred ccc
Q psy8615 120 NTY 122 (128)
Q Consensus 120 ~~~ 122 (128)
++.
T Consensus 87 A~s 89 (221)
T KOG4206|consen 87 AKS 89 (221)
T ss_pred ccC
Confidence 875
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.31 E-value=9.9e-12 Score=97.91 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=58.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCC------------CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPF------------GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN 107 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~------------G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~ 107 (128)
....++|||||||+++++++|+++|..+ +.|..+. .+..+|||||+|.+.+ +|..|+ .||
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~------~~~~kg~afVeF~~~e-~A~~Al-~l~ 243 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVN------INKEKNFAFLEFRTVE-EATFAM-ALD 243 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEE------ECCCCCEEEEEeCCHH-HHhhhh-cCC
Confidence 4456799999999999999999999864 2333333 2456899999997777 999999 599
Q ss_pred Cc-CCCeEEEEEec
Q psy8615 108 DY-LGQSFLKPSFN 120 (128)
Q Consensus 108 g~-~~~~~l~V~~~ 120 (128)
|. +.|++|+|...
T Consensus 244 g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 244 SIIYSNVFLKIRRP 257 (509)
T ss_pred CeEeeCceeEecCc
Confidence 99 99999999743
No 63
>KOG0123|consensus
Probab=99.31 E-value=6.6e-12 Score=95.77 Aligned_cols=72 Identities=24% Similarity=0.314 Sum_probs=66.3
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
.+||.||+.+++..+|+++|+.||+|.+|++..|.. | ++|| ||+|++.+ .|.+||+.+||. +.++.|.|...
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~-~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEE-SAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHH-HHHHHHHHhcCcccCCCeeEEeec
Confidence 399999999999999999999999999999999986 6 9999 99997766 999999999999 99999888543
No 64
>KOG4212|consensus
Probab=99.31 E-value=1.4e-11 Score=94.06 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=69.3
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhc-CCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 43 GANLFIYHLPPEFSDADLASMFG-PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~-~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
.+.+||.|||+++.|.+|+++|. +-|+|..|++..|.. |++|||+.|+|++++ .+++|++.||.+ +.|++|+|.=
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E-~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPE-NVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHH-HHHHHHHHhhhccccCceEEEec
Confidence 34599999999999999999996 789999999999976 999999999998887 999999999999 9999999864
No 65
>KOG0109|consensus
Probab=99.30 E-value=3.4e-12 Score=92.89 Aligned_cols=76 Identities=14% Similarity=0.260 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|+||||.+.++..+|+..|++||++.+|++++| |+||.|+..+ +|..|+..||+. +.|++|+|+.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~e-da~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAE-DAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeecc-chHHHHhcccccccccceeeeee
Confidence 34679999999999999999999999999999999855 9999997777 999999999999 9999999999
Q ss_pred cccccc
Q psy8615 120 NTYVLM 125 (128)
Q Consensus 120 ~~~~~~ 125 (128)
+|..+-
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 998764
No 66
>KOG0533|consensus
Probab=99.26 E-value=2.5e-11 Score=87.42 Aligned_cols=84 Identities=21% Similarity=0.229 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.+...++|+|.|||..+.+++|+++|+.||.+..+-+.+++. |.+.|.|-|.|...+ +|.+|++.+++. +.|++|++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~-DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRD-DAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchH-hHHHHHHHhcCcccCCceeee
Confidence 344458899999999999999999999999999999999986 999999999997777 999999999999 99999998
Q ss_pred Eeccccc
Q psy8615 118 SFNTYVL 124 (128)
Q Consensus 118 ~~~~~~~ 124 (128)
.......
T Consensus 157 ~~i~~~~ 163 (243)
T KOG0533|consen 157 EIISSPS 163 (243)
T ss_pred EEecCcc
Confidence 8765543
No 67
>KOG4661|consensus
Probab=99.26 E-value=3.4e-11 Score=94.62 Aligned_cols=83 Identities=19% Similarity=0.322 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
.-+++|||.+|.-.+...+|+.+|++||.|...+++....+-..++||||++++.. +|.+||++|+.. |.|+.|.|.-
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~-eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSA-EATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchH-HHHHHHHHhhhhhhcceeeeeee
Confidence 44679999999999999999999999999999999999888888999999997777 999999999999 9999999987
Q ss_pred ccccc
Q psy8615 120 NTYVL 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
.|.-+
T Consensus 482 aKNEp 486 (940)
T KOG4661|consen 482 AKNEP 486 (940)
T ss_pred cccCc
Confidence 76543
No 68
>KOG0132|consensus
Probab=99.25 E-value=1.8e-11 Score=98.49 Aligned_cols=72 Identities=17% Similarity=0.315 Sum_probs=66.8
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++||||+|+.+++|.+|..+|+.||+|.++.++.. +|||||.+.+.. +|++|+.+|+.+ +.++.|+|.|+-
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~Rq-dA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQ-DAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehh-HHHHHHHHHhcccccceeeEEeeec
Confidence 479999999999999999999999999999987744 789999998888 999999999999 999999999973
No 69
>KOG4205|consensus
Probab=99.23 E-value=1.3e-11 Score=91.95 Aligned_cols=76 Identities=26% Similarity=0.374 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKPS 118 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V~ 118 (128)
+.+++|||+|+|+++++.|++.|++||+|.+|.+++|+.|++++||+||+|.+.+ ....++..-.-.+.++.+.+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~-~v~~vl~~~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPE-GVDAVLNARTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCc-chheeecccccccCCccccce
Confidence 6889999999999999999999999999999999999999999999999997565 544444333323666665443
No 70
>KOG0110|consensus
Probab=99.21 E-value=1.1e-11 Score=98.81 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|+|.|||+..+-.+++.+|..||.+++|+++.....+.++|||||+|-++. +|..|+++|.+. +-|+.|.+.|++
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~-ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR-EAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH-HHHHHHHhhcccceechhhheehhc
Confidence 689999999999999999999999999999999887555778999999998888 999999999988 999999999987
Q ss_pred cc
Q psy8615 122 YV 123 (128)
Q Consensus 122 ~~ 123 (128)
.-
T Consensus 692 ~d 693 (725)
T KOG0110|consen 692 SD 693 (725)
T ss_pred cc
Confidence 54
No 71
>KOG0151|consensus
Probab=99.20 E-value=7.7e-11 Score=94.19 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecC---CCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK---QNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS 113 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~---~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~ 113 (128)
..++..+++||+||++.++|+.|-..|+.||++.+++++..+ ...+.+-||||.|.+.. ++++|++.|+|. +.+.
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~-D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRA-DAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhh-hHHHHHHHhcceeeeee
Confidence 335667899999999999999999999999999999998765 22445679999998777 999999999999 9999
Q ss_pred EEEEEeccccccccC
Q psy8615 114 FLKPSFNTYVLMNVI 128 (128)
Q Consensus 114 ~l~V~~~~~~~~~~~ 128 (128)
.+++.|++.|..|.|
T Consensus 248 e~K~gWgk~V~ip~~ 262 (877)
T KOG0151|consen 248 EMKLGWGKAVPIPNI 262 (877)
T ss_pred eeeeccccccccCCc
Confidence 999999999988765
No 72
>KOG0226|consensus
Probab=99.18 E-value=2e-11 Score=87.48 Aligned_cols=78 Identities=26% Similarity=0.300 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
+.+..+||+|.|..+++++.|-..|.+|-.-...++++|+.||+++|||||.|.+.. +..+|+..|+|. +|.++|+..
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pa-d~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPA-DYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHH-HHHHHHHhhcccccccchhHhh
Confidence 355679999999999999999999999999999999999999999999999998887 999999999999 999998753
No 73
>KOG0123|consensus
Probab=99.16 E-value=1.2e-10 Score=88.97 Aligned_cols=73 Identities=26% Similarity=0.300 Sum_probs=67.9
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~ 122 (128)
..|||| ++++|.+|+++|+++|++.++++-+|. | +-|||||.|.++. +|++|++.+|.. +.|++++|-|+..
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~-da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPA-DAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHH-HHHHHHHHcCCcccCCcEEEeehhcc
Confidence 368998 999999999999999999999999998 6 9999999998888 999999999999 9999999999864
Q ss_pred c
Q psy8615 123 V 123 (128)
Q Consensus 123 ~ 123 (128)
.
T Consensus 75 d 75 (369)
T KOG0123|consen 75 D 75 (369)
T ss_pred C
Confidence 3
No 74
>KOG4212|consensus
Probab=99.14 E-value=1.5e-10 Score=88.47 Aligned_cols=75 Identities=23% Similarity=0.284 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
..+.|+|||.|||+++||..|++-|..||.+....++ +.|+++| .|.|.+++ +|++|+..|++. +.|+.|+|.
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim---e~GkskG--VVrF~s~e-dAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM---ENGKSKG--VVRFFSPE-DAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhh---ccCCccc--eEEecCHH-HHHHHHHHhccCcccCceeeee
Confidence 3557899999999999999999999999999999883 2388888 78997777 999999999999 999999998
Q ss_pred ec
Q psy8615 119 FN 120 (128)
Q Consensus 119 ~~ 120 (128)
|.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 83
No 75
>KOG0153|consensus
Probab=99.11 E-value=4.3e-10 Score=83.62 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=67.9
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc--CCCeE
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY--LGQSF 114 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~~~ 114 (128)
..++..-++|||++|-..++|.+|++.|.+||+|+++.+... +++|||+|-+.. .|+.|.+..-.. +.|+.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~-aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTRE-AAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhH-HHHHHHHhhcceeeecceE
Confidence 344555679999999999999999999999999999988765 459999997777 888888776666 99999
Q ss_pred EEEEeccc
Q psy8615 115 LKPSFNTY 122 (128)
Q Consensus 115 l~V~~~~~ 122 (128)
|+|.|+.+
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999987
No 76
>KOG0110|consensus
Probab=99.09 E-value=3e-10 Score=90.72 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=68.3
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCC---CcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNN---RSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg---~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
.++|||.||+++++.+++...|.+.|.|.++.|...+... -+.|||||+|.+.+ +|+.|++.|+|. +.|+.|.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e-~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPE-SAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHH-HHHHHHHHhcCceecCceEEEE
Confidence 4559999999999999999999999999999887665421 24499999998777 999999999999 999999998
Q ss_pred ecc
Q psy8615 119 FNT 121 (128)
Q Consensus 119 ~~~ 121 (128)
++-
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 876
No 77
>KOG1548|consensus
Probab=99.04 E-value=2.5e-09 Score=79.62 Aligned_cols=82 Identities=12% Similarity=0.265 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEE--------EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLS--------AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~--------~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
....+.|||+|||.++|.+++.++|++||-|.+ |++.++.. |+.+|=|.+.|-..+ ....|++.|++. +
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~E-SVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRE-SVELAIKILDEDEL 208 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeeccc-HHHHHHHHhCcccc
Confidence 344678999999999999999999999998744 78888887 999999999997766 999999999999 9
Q ss_pred CCeEEEEEecccc
Q psy8615 111 GQSFLKPSFNTYV 123 (128)
Q Consensus 111 ~~~~l~V~~~~~~ 123 (128)
.|+.|+|+=+++.
T Consensus 209 rg~~~rVerAkfq 221 (382)
T KOG1548|consen 209 RGKKLRVERAKFQ 221 (382)
T ss_pred cCcEEEEehhhhh
Confidence 9999999877664
No 78
>KOG0116|consensus
Probab=99.03 E-value=1.3e-09 Score=84.12 Aligned_cols=79 Identities=20% Similarity=0.419 Sum_probs=67.6
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEEEeccc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKPSFNTY 122 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V~~~~~ 122 (128)
...|||.|||+++++.+|+++|.+||.|+...|......++..+||||+|.+.. .++.||++---.+|++.|.|.-+++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~-~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAA-AVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecc-hhhhhhhcCccccCCeeEEEEeccc
Confidence 456999999999999999999999999999888665533566699999998888 9999998884339999999988775
No 79
>KOG4209|consensus
Probab=99.00 E-value=8.9e-10 Score=79.24 Aligned_cols=83 Identities=10% Similarity=0.122 Sum_probs=75.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
....+...+||+|+.+.++-+++...|+.||.+..+.+..|+.+|+++||+||+|.+.. ..+.++. ||+. +.++.++
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~-~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYE-LVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHh-hhHHHhh-cCCcccccccce
Confidence 34556789999999999999999999999999999999999999999999999997777 9999999 9999 9999999
Q ss_pred EEeccc
Q psy8615 117 PSFNTY 122 (128)
Q Consensus 117 V~~~~~ 122 (128)
|.+++=
T Consensus 174 vt~~r~ 179 (231)
T KOG4209|consen 174 VTLKRT 179 (231)
T ss_pred eeeeee
Confidence 998753
No 80
>KOG4205|consensus
Probab=98.91 E-value=5e-09 Score=78.15 Aligned_cols=79 Identities=19% Similarity=0.329 Sum_probs=65.1
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
..++||++||.+++++++++.|++||.|..+.++.|..+.+.+||+||.|++.+ ... -+....-+ +.++.++|.-+.
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~-sVd-kv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSED-SVD-KVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccc-ccc-eecccceeeecCceeeEeecc
Confidence 348999999999999999999999999999999999999999999999996554 443 34444445 888888776655
Q ss_pred cc
Q psy8615 122 YV 123 (128)
Q Consensus 122 ~~ 123 (128)
+.
T Consensus 175 pk 176 (311)
T KOG4205|consen 175 PK 176 (311)
T ss_pred ch
Confidence 44
No 81
>KOG1190|consensus
Probab=98.87 E-value=2.7e-08 Score=75.66 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCeEEEcCCC-CCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 43 GANLFIYHLP-PEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 43 ~~~l~V~nLp-~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
.+.|.|.||. ..+|.+.|..+|+.||.|.++++.+.+ +--|.|.|.+.. .|+.|+++|+|. +.|+.|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~-qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQ-QAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----Ccceeeeecchh-HHHHHHHHhhcceecCceEEEeec
Confidence 5678899986 569999999999999999999998776 347899999988 999999999999 99999999999
Q ss_pred ccccc
Q psy8615 121 TYVLM 125 (128)
Q Consensus 121 ~~~~~ 125 (128)
|..-+
T Consensus 371 KH~~v 375 (492)
T KOG1190|consen 371 KHTNV 375 (492)
T ss_pred cCccc
Confidence 97644
No 82
>KOG0120|consensus
Probab=98.86 E-value=5.1e-09 Score=82.02 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=74.9
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
..++||++||...++.+++++...||+++..+++.|..+|-++||+|.+|-++. ....|+..|||. +|++.|.|+.+-
T Consensus 289 ~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dps-vtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 289 PNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPS-VTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred cchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCc-chhhhhcccchhhhcCceeEeehhh
Confidence 568999999999999999999999999999999999999999999999999998 999999999999 999999998765
Q ss_pred cc
Q psy8615 122 YV 123 (128)
Q Consensus 122 ~~ 123 (128)
.-
T Consensus 368 ~g 369 (500)
T KOG0120|consen 368 VG 369 (500)
T ss_pred cc
Confidence 43
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.81 E-value=4.6e-08 Score=61.36 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=67.0
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcC--CCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC----CeEEE
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGP--FGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG----QSFLK 116 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~--~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~----~~~l~ 116 (128)
|+|.+.|||...+.++|.+++.. .|...-+.++.|..++-+.|||||.|-+++ .+.+=.+.++|. +. .|...
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~-~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQ-AAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHH-HHHHHHHHHcCCccccCCCCcEEE
Confidence 78999999999999999988864 367777889999999999999999997777 888888999997 53 58888
Q ss_pred EEeccc
Q psy8615 117 PSFNTY 122 (128)
Q Consensus 117 V~~~~~ 122 (128)
|+|++-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 888763
No 84
>KOG1457|consensus
Probab=98.78 E-value=1.8e-07 Score=66.44 Aligned_cols=80 Identities=15% Similarity=0.167 Sum_probs=62.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEe-cCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C---CCeEEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI-DKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L---GQSFLK 116 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~-~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~---~~~~l~ 116 (128)
.-++|||.+||.++...+|+.+|..|..-..+.+-. ++.....+-+||++|.+.. +|..|++.|||. + -+..|+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q-~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQ-FALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchH-HHHHHHHHhcCeeeccccCceeE
Confidence 357999999999999999999999985555544432 3322234579999998888 999999999997 3 347899
Q ss_pred EEeccc
Q psy8615 117 PSFNTY 122 (128)
Q Consensus 117 V~~~~~ 122 (128)
|.++|.
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 998874
No 85
>KOG4454|consensus
Probab=98.70 E-value=7.4e-09 Score=73.09 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=68.0
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
.++|||+|+...++|+-|.++|-+-|+|.++.|..++. ++.+ |+||.|.+.. ...-|++-+||. +.++.++|.+-
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~-sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNEN-SVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeeccccc-chhhhhhhcccchhccchhhcccc
Confidence 56899999999999999999999999999999988876 7777 9999997777 889999999999 99999888764
No 86
>KOG4660|consensus
Probab=98.67 E-value=2.8e-08 Score=77.80 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=62.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
+....+|+|-|||..+++++|+.+|+.||+|+.++ .|-..+|..||+|.+-- +|++|++.|++. +.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir-----~t~~~~~~~~v~FyDvR-~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR-----ETPNKRGIVFVEFYDVR-DAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhh-----cccccCceEEEEEeehH-hHHHHHHHHHHHHhhhhhhc
Confidence 34456899999999999999999999999999864 34556899999999998 999999999998 8888877
No 87
>KOG0106|consensus
Probab=98.66 E-value=2e-08 Score=71.23 Aligned_cols=69 Identities=17% Similarity=0.209 Sum_probs=61.5
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
..+|||+||+.+.+.++..+|..||.+.++.+. .||+||+|++.. +|..|+..+|+. +++-.+.|.|.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~r-da~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPR-DADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchh-hhhcccchhcCceecceeeeeeccc
Confidence 468999999999999999999999999987643 568999999988 999999999999 777558998877
No 88
>KOG4211|consensus
Probab=98.57 E-value=3e-07 Score=71.36 Aligned_cols=78 Identities=10% Similarity=0.178 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEEEec
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKPSFN 120 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V~~~ 120 (128)
.....|-+.+|||++|+++|.++|+.++ |..+.+. +.+|+..|-|||+|.+.+ +++.|++.-...++.+.|.|-=.
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~see-dv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEE-DVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechH-HHHHHHHhhHHHhCCceEEEEcc
Confidence 3455677899999999999999999997 6765444 446999999999996666 99999988776699999998655
Q ss_pred cc
Q psy8615 121 TY 122 (128)
Q Consensus 121 ~~ 122 (128)
+.
T Consensus 84 ~~ 85 (510)
T KOG4211|consen 84 GG 85 (510)
T ss_pred CC
Confidence 43
No 89
>KOG0147|consensus
Probab=98.43 E-value=1.1e-07 Score=74.38 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=69.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
+.+.+++|+..++...++.+|.++|+.+|.|+.++++.|+.++.++|.+||+|.+.+ ....|| .|.|. +.|-+|.|.
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~-sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQ-SVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEeccc-chhhHh-hhcCCcccCceeEec
Confidence 344678999999999999999999999999999999999999999999999998776 666666 88888 888898887
Q ss_pred ec
Q psy8615 119 FN 120 (128)
Q Consensus 119 ~~ 120 (128)
..
T Consensus 254 ~s 255 (549)
T KOG0147|consen 254 LS 255 (549)
T ss_pred cc
Confidence 53
No 90
>KOG1995|consensus
Probab=98.36 E-value=7.3e-07 Score=66.83 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=73.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEE--------EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLS--------AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~--------~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
....-++||-+||..+++.++.++|.++|.|.. +.+-+|+.|+..+|-|.|.|+++. .|+.||..+++. +
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~-~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPP-AAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChh-hhhhhhhhhccccc
Confidence 444668999999999999999999999998743 667889999999999999999999 999999999999 8
Q ss_pred CCeEEEEEecccc
Q psy8615 111 GQSFLKPSFNTYV 123 (128)
Q Consensus 111 ~~~~l~V~~~~~~ 123 (128)
.+..|+|++....
T Consensus 142 ~gn~ikvs~a~~r 154 (351)
T KOG1995|consen 142 CGNTIKVSLAERR 154 (351)
T ss_pred cCCCchhhhhhhc
Confidence 8899999887654
No 91
>KOG4210|consensus
Probab=98.36 E-value=3.3e-07 Score=67.92 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=69.7
Q ss_pred CCeEE-EcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 43 GANLF-IYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 43 ~~~l~-V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++| |+++++++++++|+..|..+|.|..+++..++.+|..+||++++|.... +...++.. +.. ++++++.+.+.
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN-SKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch-hHHHHhhc-ccCcccCcccccccC
Confidence 34555 9999999999999999999999999999999999999999999997776 77777776 666 99999999998
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
.+.
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 876
No 92
>KOG4211|consensus
Probab=98.32 E-value=4e-06 Score=65.22 Aligned_cols=77 Identities=13% Similarity=0.216 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEE-EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLS-AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~-~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V~~~~ 121 (128)
...|-+.+||+.+++++|.++|+.--.+.. +-++.|+. |++.|-|||.|++.+ .+++|+......+|.+.|.|-=++
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe-~ae~Al~rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQE-SAEIALGRHRENIGHRYIEVFRSS 180 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHH-HHHHHHHHHHHhhccceEEeehhH
Confidence 346778999999999999999997654444 55677776 889999999997777 999998887766999999885443
No 93
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.30 E-value=2.2e-06 Score=64.20 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=60.2
Q ss_pred CCeEEEcCCCCCCCHHH----H--HhhhcCCCceEEEEEEecCCCCCc-ce-EE-EEEEecCHHHHHHHHHHhcCc-CCC
Q psy8615 43 GANLFIYHLPPEFSDAD----L--ASMFGPFGTVLSAKVFIDKQNNRS-KC-FG-TIIFMRKFFILTIRFDTANDY-LGQ 112 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~----l--~~~f~~~G~i~~~~~~~~~~tg~~-~g-~~-fv~f~~~~~~a~~Ai~~l~g~-~~~ 112 (128)
..-+||-+||+.+..|+ | .++|++||.|.++.+.+...+-.+ .+ +| |+.|++.+ +|.+||...+|. ++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~ke-dAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKE-DAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchH-HHHHHHHHhccccccC
Confidence 34679999988776665 3 378999999999876554322222 23 33 89997777 999999999999 999
Q ss_pred eEEEEEecc
Q psy8615 113 SFLKPSFNT 121 (128)
Q Consensus 113 ~~l~V~~~~ 121 (128)
|.|+.+|++
T Consensus 193 r~lkatYGT 201 (480)
T COG5175 193 RVLKATYGT 201 (480)
T ss_pred ceEeeecCc
Confidence 999999986
No 94
>KOG1457|consensus
Probab=98.22 E-value=1.6e-06 Score=61.71 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=49.7
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
.+|||.||..+++|++|+.+|+.|.....+++... | .-..+|++|++-+ .|..|+.+|+|.
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~-~at~am~~lqg~ 271 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---G-GMPVAFADFEEIE-QATDAMNHLQGN 271 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---C-CcceEeecHHHHH-HHHHHHHHhhcc
Confidence 48999999999999999999999976666554322 2 2458999997666 999999999986
No 95
>KOG4206|consensus
Probab=98.21 E-value=1.1e-05 Score=57.24 Aligned_cols=76 Identities=13% Similarity=0.289 Sum_probs=64.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC-CeEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG-QSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~-~~~l~V 117 (128)
.+....+|+.|||.+++.+.+..+|.+|..-++++++... ++.+||+|.+.. .+..|.+.++++ +- ...++|
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~-~a~~a~~~lq~~~it~~~~m~i 216 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDR-QASAAQQALQGFKITKKNTMQI 216 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhh-hhHHHhhhhccceeccCceEEe
Confidence 3445679999999999999999999999988998877543 679999997666 788999999998 55 788999
Q ss_pred Eecc
Q psy8615 118 SFNT 121 (128)
Q Consensus 118 ~~~~ 121 (128)
.|.+
T Consensus 217 ~~a~ 220 (221)
T KOG4206|consen 217 TFAK 220 (221)
T ss_pred cccC
Confidence 8875
No 96
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.12 E-value=1.6e-05 Score=48.34 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=45.6
Q ss_pred CeEEEcCCCCCCCHHH----HHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 44 ANLFIYHLPPEFSDAD----LASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~----l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
+.|||.|||.+.+... |+.++..|| .|.++ +.+-|++.|.+.+ .|.+|.+.|+|- ..|+.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~-~A~RA~KRmegEdVfG~kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQE-FAERAQKRMEGEDVFGNKISV 71 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHH-HHHHHHHHHTT--SSSS--EE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHH-HHHHHHHhhcccccccceEEE
Confidence 4689999999988765 566777886 55543 2468999996666 999999999999 77778899
Q ss_pred Eecc
Q psy8615 118 SFNT 121 (128)
Q Consensus 118 ~~~~ 121 (128)
+|..
T Consensus 72 ~~~~ 75 (90)
T PF11608_consen 72 SFSP 75 (90)
T ss_dssp ESS-
T ss_pred EEcC
Confidence 9873
No 97
>KOG1456|consensus
Probab=98.08 E-value=7.1e-05 Score=56.94 Aligned_cols=79 Identities=16% Similarity=0.187 Sum_probs=68.5
Q ss_pred CCCCCCCeEEEcCCCCC-CCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 38 LTGPEGANLFIYHLPPE-FSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~-~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
....+++.+.|.+|+.. .+-+.|..+|-.||.|.++++++.+ .|-|.|++.+.. ..++|+.+||+. +.|..|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~-aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAY-AVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHH-HHHHHHHHhccCccccceE
Confidence 34466899999999876 5557899999999999999999776 578999998888 999999999999 888899
Q ss_pred EEEeccc
Q psy8615 116 KPSFNTY 122 (128)
Q Consensus 116 ~V~~~~~ 122 (128)
.|+++|-
T Consensus 356 ~v~~SkQ 362 (494)
T KOG1456|consen 356 NVCVSKQ 362 (494)
T ss_pred EEeeccc
Confidence 9999874
No 98
>KOG4849|consensus
Probab=98.01 E-value=9.9e-06 Score=61.04 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=63.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCC--ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC-eEEEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFG--TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ-SFLKP 117 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G--~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~-~~l~V 117 (128)
....+|||||-|.++++||.+.+...| .+.++++...+.+|+++||+.+.. .++....+-++.|-.+ +.| .+...
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~-~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVL-NSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEe-cchHHHHHHHHhcccceecCCCCeee
Confidence 345789999999999999998887766 566778888888999999999999 5554666777778777 544 67777
Q ss_pred Eeccc
Q psy8615 118 SFNTY 122 (128)
Q Consensus 118 ~~~~~ 122 (128)
+|+|-
T Consensus 158 ~~NK~ 162 (498)
T KOG4849|consen 158 SYNKT 162 (498)
T ss_pred ccchh
Confidence 77763
No 99
>KOG1190|consensus
Probab=97.99 E-value=2e-05 Score=60.40 Aligned_cols=78 Identities=22% Similarity=0.323 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC-eEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ-SFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~-~~l~V~ 118 (128)
++..++...|+|.+++|++++..|..-|...+...-. ++.+-++.+.+++.+ +|..|+..++.+ +|. ..|+|+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff----~kd~kmal~q~~sve-eA~~ali~~hnh~lgen~hlRvS 486 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFF----QKDRKMALPQLESVE-EAIQALIDLHNHYLGENHHLRVS 486 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeeec----CCCcceeecccCChh-HhhhhccccccccCCCCceEEEE
Confidence 4455899999999999999999999888766543222 344669999997777 999999999998 777 489999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+|.-
T Consensus 487 FSks~ 491 (492)
T KOG1190|consen 487 FSKST 491 (492)
T ss_pred eeccc
Confidence 99864
No 100
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.99 E-value=2.1e-05 Score=50.07 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=37.1
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND 108 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g 108 (128)
|+.|++.+++..++-++|++.|++||.|..|.+..... -|||.|.+++ .|+.|+..+..
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~-~A~~a~~~~~~ 59 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPE-AAQKALEKLKE 59 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS----HHHHHHHHHH
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcc-hHHHHHHHHHh
Confidence 46788999999999999999999999999887765433 7899998777 88888877653
No 101
>KOG2314|consensus
Probab=97.94 E-value=4.9e-05 Score=60.39 Aligned_cols=76 Identities=11% Similarity=0.009 Sum_probs=61.2
Q ss_pred CCCCeEEEcCCCCCCCH------HHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc--CCC
Q psy8615 41 PEGANLFIYHLPPEFSD------ADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY--LGQ 112 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e------~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~ 112 (128)
...+.|+|.|+|.--.. ..|..+|+++|++....++.+.. |..+||.|++|.+.. +|..|++.+||+ .-+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~-~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMR-DAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChh-hHHHHHHhcccceeccc
Confidence 34568899999864322 24678899999999999998988 559999999998888 999999999998 445
Q ss_pred eEEEEE
Q psy8615 113 SFLKPS 118 (128)
Q Consensus 113 ~~l~V~ 118 (128)
+...|.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 666654
No 102
>KOG3152|consensus
Probab=97.75 E-value=2.3e-05 Score=56.65 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=58.5
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCC--------CCcce----EEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQN--------NRSKC----FGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~t--------g~~~g----~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
-.||+++||+.+....|+.+|+.||.|-+|.+.....+ |.++. -|+|+|.+.. .|.+....||+. +
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~Kr-vAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKR-VAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHH-HHHHHHHHhCCCcc
Confidence 37999999999999999999999999999988765544 33333 3679998877 999999999999 9
Q ss_pred CCeE
Q psy8615 111 GQSF 114 (128)
Q Consensus 111 ~~~~ 114 (128)
||+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9864
No 103
>KOG0106|consensus
Probab=97.73 E-value=2.3e-05 Score=55.76 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=58.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
...+.+.|.+++..+.+.+|.+.|.++|.+..... .++++||+|+..+ ++.+|+..+++. +.++.|.+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~-da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQE-DAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhh-hhhhcchhccchhhcCceeee
Confidence 34678999999999999999999999999843322 3679999997776 999999999999 99999887
No 104
>KOG4307|consensus
Probab=97.60 E-value=0.00082 Score=54.88 Aligned_cols=75 Identities=8% Similarity=0.073 Sum_probs=62.6
Q ss_pred CC-eEEEcCCCCCCCHHHHHhhhcCCCceEE-EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 43 GA-NLFIYHLPPEFSDADLASMFGPFGTVLS-AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 43 ~~-~l~V~nLp~~~~e~~l~~~f~~~G~i~~-~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
++ .|-+.|.|++++-+|+.++|..|-.+.. |++-+. +-|+..|-|-|.|++.+ +|.+|...+++. ++++.+++.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~-eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQE-EARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHH-HHHhhhhccccCcccceeEEEEe
Confidence 44 7789999999999999999999965543 333333 34999999999998888 999999999999 9999988764
No 105
>KOG0120|consensus
Probab=97.59 E-value=0.00019 Score=56.78 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=47.8
Q ss_pred HHHhhhcCCCceEEEEEEecCCCCC---cceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 59 DLASMFGPFGTVLSAKVFIDKQNNR---SKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 59 ~l~~~f~~~G~i~~~~~~~~~~tg~---~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
+++..+++||.|.+|.+..+-..+. ..|--||+|.+.+ ++++|.+.|+|. +.|+++..+|
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~e-d~qrA~~~L~GrKF~nRtVvtsY 488 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTE-DSQRAMEELTGRKFANRTVVASY 488 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChH-HHHHHHHHccCceeCCcEEEEEe
Confidence 4556677999999999988732222 2455699998877 999999999999 9999988776
No 106
>KOG1855|consensus
Probab=97.54 E-value=9.8e-05 Score=56.93 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=57.4
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEec---CCC--CCc--------ceEEEEEEecCHHHHHHH
Q psy8615 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFID---KQN--NRS--------KCFGTIIFMRKFFILTIR 102 (128)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~---~~t--g~~--------~g~~fv~f~~~~~~a~~A 102 (128)
...++...++|.+-|||.+-.-+.|.++|+.+|.|..|++... +.. |.. +-+|+|+|+..+ .|.+|
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~-~A~KA 302 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVE-AARKA 302 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhH-HHHHH
Confidence 3444556889999999999999999999999999999997554 211 221 458899998777 99999
Q ss_pred HHHhcCc
Q psy8615 103 FDTANDY 109 (128)
Q Consensus 103 i~~l~g~ 109 (128)
.+.++..
T Consensus 303 ~e~~~~e 309 (484)
T KOG1855|consen 303 RELLNPE 309 (484)
T ss_pred HHhhchh
Confidence 9998653
No 107
>KOG1456|consensus
Probab=97.46 E-value=0.00089 Score=51.14 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=60.2
Q ss_pred CCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc---CCCeEEEEEeccccccccC
Q psy8615 52 PPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY---LGQSFLKPSFNTYVLMNVI 128 (128)
Q Consensus 52 p~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~---~~~~~l~V~~~~~~~~~~~ 128 (128)
-..++-+.|..+--+.|+|.++.+... +|. -|.|+|++.+ .|++|.+.|||. -|.-.|||.|+||--+||+
T Consensus 131 ~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~-~AqrAk~alNGADIYsGCCTLKIeyAkP~rlnV~ 204 (494)
T KOG1456|consen 131 QYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVE-VAQRAKAALNGADIYSGCCTLKIEYAKPTRLNVQ 204 (494)
T ss_pred ccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhH-HHHHHHhhcccccccccceeEEEEecCcceeeee
Confidence 356888999999999999999876644 343 5899997777 999999999996 5779999999999999885
No 108
>KOG0112|consensus
Probab=97.42 E-value=0.00047 Score=57.42 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=66.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC--eEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ--SFL 115 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~--~~l 115 (128)
.....+.+|+++|...+....|...|..||.|..|.+- +..-|+++.|++.. .++.|++.|.|+ +|+ +.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~-~aq~a~~~~rgap~G~P~~r~ 523 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPP-AAQAATHDMRGAPLGGPPRRL 523 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCc-cchhhHHHHhcCcCCCCCccc
Confidence 34456789999999999999999999999999986542 22459999999888 999999999999 887 779
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
.|.|...+
T Consensus 524 rvdla~~~ 531 (975)
T KOG0112|consen 524 RVDLASPP 531 (975)
T ss_pred ccccccCC
Confidence 99998754
No 109
>KOG0128|consensus
Probab=97.38 E-value=7.1e-05 Score=61.73 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=69.0
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
...++|.|.|+..|.+.++.++..+|.+.+.+++..+. |+.+|-+||.|.... ++.++....+.. +.-+.+.|+.++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea-~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEA-DASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcc-hhhhhcccchhhhhhhcCccccccC
Confidence 35789999999999999999999999999999888887 999999999997666 899898888887 777778888866
Q ss_pred c
Q psy8615 122 Y 122 (128)
Q Consensus 122 ~ 122 (128)
|
T Consensus 814 p 814 (881)
T KOG0128|consen 814 P 814 (881)
T ss_pred C
Confidence 5
No 110
>KOG1365|consensus
Probab=97.38 E-value=0.00035 Score=53.46 Aligned_cols=73 Identities=15% Similarity=0.223 Sum_probs=56.8
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCC----CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEE
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPF----GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKP 117 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~----G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V 117 (128)
.-.|-+.+||+++++.++.++|.+- |....+-++..++ |+..|-|||.|...+ +|..|+.+-.+.+|.|.|++
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee-~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEE-DAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHH-HHHHHHHHHHHHHhHHHHHH
Confidence 3356788999999999999999742 3455666676665 999999999996665 99999988766677766543
No 111
>KOG0128|consensus
Probab=97.36 E-value=1.6e-05 Score=65.45 Aligned_cols=67 Identities=22% Similarity=0.418 Sum_probs=59.0
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG 111 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~ 111 (128)
+++||+||+..+.+++|...|+++|.+..+++......++.||.|+++|..+. ++.+|+...++. +|
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~-~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPE-HAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCC-chhhhhhhhhhhhhh
Confidence 57899999999999999999999998888776666677999999999998888 999999888876 44
No 112
>KOG1548|consensus
Probab=97.31 E-value=0.00093 Score=50.41 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCeEEEcCC--C--CCCC-------HHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 43 GANLFIYHL--P--PEFS-------DADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 43 ~~~l~V~nL--p--~~~~-------e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
.++|.+.|+ | +..+ +++|++--++||.|+++.+ .| .++.|.+-|.|.+++ +|..||+.|+|. +
T Consensus 265 ~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv-~d---~hPdGvvtV~f~n~e-eA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 265 DRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVV-YD---RHPDGVVTVSFRNNE-EADQCIQTMDGRWF 339 (382)
T ss_pred CcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEE-ec---cCCCceeEEEeCChH-HHHHHHHHhcCeee
Confidence 467778887 2 2344 3456666789999999864 44 355789999998887 999999999999 9
Q ss_pred CCeEEEEEe
Q psy8615 111 GQSFLKPSF 119 (128)
Q Consensus 111 ~~~~l~V~~ 119 (128)
+||.|..+.
T Consensus 340 dgRql~A~i 348 (382)
T KOG1548|consen 340 DGRQLTASI 348 (382)
T ss_pred cceEEEEEE
Confidence 999987654
No 113
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.30 E-value=0.00051 Score=38.32 Aligned_cols=52 Identities=13% Similarity=0.245 Sum_probs=38.8
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHH
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRF 103 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai 103 (128)
+.|-|.+.+.+..+..|+ .|..||+|.+..+... .-+.++.|.+.. +|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl~-~F~~fGeI~~~~~~~~------~~~~~l~y~~~~-~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVLE-HFASFGEIVDIYVPES------TNWMYLKYKSRK-DAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHHH-HHHhcCCEEEEEcCCC------CcEEEEEECCHH-HHHhhC
Confidence 346677888777766555 7888999999876522 348999998777 888874
No 114
>KOG1365|consensus
Probab=97.25 E-value=0.0011 Score=50.84 Aligned_cols=74 Identities=12% Similarity=0.119 Sum_probs=60.5
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCC-ceEE--EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFG-TVLS--AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G-~i~~--~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
.|-+.+||++.+.+++-++|..|. .|+. ++++...+ |+..|-|||+|.+.+ +|..|....+.. ...+.|+|--.
T Consensus 282 cvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae-~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 282 CVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAE-RARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred eeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhH-HHHHHHHHHHHhhcccceEEEeec
Confidence 566889999999999999999885 3333 77788877 999999999996665 999999999888 55788887543
No 115
>KOG1996|consensus
Probab=97.14 E-value=0.0013 Score=48.83 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=50.2
Q ss_pred HHHHhhhcCCCceEEEEEEecCCCCCcc-eEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 58 ADLASMFGPFGTVLSAKVFIDKQNNRSK-CFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 58 ~~l~~~f~~~G~i~~~~~~~~~~tg~~~-g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
++.++..++||.|..|-+..++.--..+ ---||+|++.+ .|.+|+-.|||. +||+..+.+|-+
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e-~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVE-SAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHH-HHHHHHHhcCCceecceeeeheecc
Confidence 4566778899999999887776433333 34699997777 999999999999 999999988754
No 116
>KOG0129|consensus
Probab=97.09 E-value=0.0035 Score=49.54 Aligned_cols=53 Identities=21% Similarity=0.355 Sum_probs=38.8
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCC-C--CCcce---EEEEEEecCH
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQ-N--NRSKC---FGTIIFMRKF 96 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~-t--g~~~g---~~fv~f~~~~ 96 (128)
.++||||+||++++|+.|...|..||.+. +.+..... . -..+| |.|..|++..
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~ 317 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDER 317 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchH
Confidence 56899999999999999999999999753 34432111 0 22356 9999995544
No 117
>KOG2253|consensus
Probab=97.05 E-value=0.00068 Score=54.79 Aligned_cols=69 Identities=17% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
.+...++||+|+...+.++-++.++..||.|.+++... |||+.|.... ...+|+..++.. ++|+-|.+.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~-~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHI-GDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHH-HHHHHHHHhcccCCCcchhhcc
Confidence 34466899999999999999999999999998875432 9999998777 888899999988 877665443
No 118
>KOG2193|consensus
Probab=97.03 E-value=0.0006 Score=52.82 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=54.2
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc--CCCeEEEEEec
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY--LGQSFLKPSFN 120 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~~~l~V~~~ 120 (128)
.++|++||.+..+..+|+.+|...- +......-...||+||.+.+.. .|.+|++.++|. +.|+.+.|.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak------~~~~g~fl~k~gyafvd~pdq~-wa~kaie~~sgk~elqGkr~e~~~s 73 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK------IPGSGQFLVKSGYAFVDCPDQQ-WANKAIETLSGKVELQGKRQEVEHS 73 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc------CCCCcceeeecceeeccCCchh-hhhhhHHhhchhhhhcCceeeccch
Confidence 3689999999999999999998541 1111111123679999997666 999999999998 99999988764
No 119
>KOG2068|consensus
Probab=97.00 E-value=0.0003 Score=52.72 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=59.1
Q ss_pred CeEEEcCCCCCCCHHH-HH--hhhcCCCceEEEEEEecCC--CCCc-ceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 44 ANLFIYHLPPEFSDAD-LA--SMFGPFGTVLSAKVFIDKQ--NNRS-KCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~-l~--~~f~~~G~i~~~~~~~~~~--tg~~-~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
..+||-+|+....++. |+ +.|++||.|.++....++. .+.. ..-++|.|+..+ +|..||...+|+ +.|+.|+
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~e-da~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEE-DADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchH-hhhhHHHHhhhHHhhhhhhH
Confidence 3568888887765544 44 6688999999988777662 1221 123799996655 999999999999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
.++++..
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 9988754
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.93 E-value=0.0041 Score=41.73 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=39.6
Q ss_pred HHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccccccc
Q psy8615 59 DLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTYVLMN 126 (128)
Q Consensus 59 ~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~~~~~ 126 (128)
+|-+.|..||.+.-++++-+ --+|+|.+.. .|.+| -.++|. ++|+.|+|+.|++--++
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~-sALaa-ls~dg~~v~g~~l~i~LKtpdW~~ 110 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQ-SALAA-LSLDGIQVNGRTLKIRLKTPDWLK 110 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCH-HHHHH-HHGCCSEETTEEEEEEE-------
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccH-HHHHH-HccCCcEECCEEEEEEeCCccHHH
Confidence 56677889999988887754 4589997776 77755 567777 99999999999987654
No 121
>KOG4307|consensus
Probab=96.92 E-value=0.0017 Score=53.06 Aligned_cols=77 Identities=10% Similarity=0.115 Sum_probs=63.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEE-EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLS-AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~-~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
.-+..|||-.||..+++.++.++|..--.|.+ |.+.+.+. ++.++.|||.|-... .+..|...-+.+ +|.+.|+|.
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~-~~~~~~afv~F~~~~-a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPT-DLLRPAAFVAFIHPT-APLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCc-ccccchhhheecccc-ccchhhhcccccccCceEEEee
Confidence 34668999999999999999999998777766 77766664 888999999996655 777777777777 999999986
Q ss_pred e
Q psy8615 119 F 119 (128)
Q Consensus 119 ~ 119 (128)
-
T Consensus 510 s 510 (944)
T KOG4307|consen 510 S 510 (944)
T ss_pred c
Confidence 4
No 122
>KOG0129|consensus
Probab=96.79 E-value=0.0046 Score=48.87 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=53.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhc-CCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHH
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFG-PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFD 104 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~-~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~ 104 (128)
...+||||+||.-++.++|-.+|+ -||.|.-+.|-.|++-...+|-|-|.|++.. .=.+||.
T Consensus 369 prrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqq-sYi~AIs 431 (520)
T KOG0129|consen 369 PRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQ-AYIKAIS 431 (520)
T ss_pred ccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccH-HHHHHHh
Confidence 356899999999999999999999 7999999999999777899999999996665 4445554
No 123
>KOG0115|consensus
Probab=96.75 E-value=0.0019 Score=46.97 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=55.5
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND 108 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g 108 (128)
..|||.||+.-++.+.+...|+.||+|.+.-+..|.. ++..+-++|.|.... .+..|....+-
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~-~a~~a~rr~~~ 94 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKP-NARKAARRCRE 94 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcch-hHHHHHHHhcc
Confidence 6799999999999999999999999999877777765 899999999998888 88888887753
No 124
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.63 E-value=0.031 Score=34.11 Aligned_cols=53 Identities=17% Similarity=0.376 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN 107 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~ 107 (128)
..|++ .|.++...||..+|++||.|. |.++.|. -|||...+.+ .+..++..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~-~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRD-QAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCH-HHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHH-HHHHHHHHhc
Confidence 45564 999999999999999999864 5666664 6999998888 8888887776
No 125
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.28 E-value=0.022 Score=32.77 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=43.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCC---CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHh
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPF---GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTA 106 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~---G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l 106 (128)
...+|+|.+++ +.+.++++.+|..| ....+++++.|.. |-|.|.+.. .|.+|+.+|
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-------cNvvf~d~~-~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-------CNVVFKDEE-TAARALVAL 62 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-------EEEEECCHH-HHHHHHHcC
Confidence 45689999985 47888899999887 2457889998863 568897777 999998764
No 126
>KOG2202|consensus
Probab=96.23 E-value=0.0016 Score=47.24 Aligned_cols=61 Identities=10% Similarity=0.075 Sum_probs=45.6
Q ss_pred HHHHhhhc-CCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 58 ADLASMFG-PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 58 ~~l~~~f~-~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
+++...|+ +||+|.++.+ .+...-...|-.+|.|. .+++|++|++.||+. ++|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~V-c~Nl~~hl~GNVYV~f~-~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNV-CDNLGDHLVGNVYVKFR-SEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhh-hcccchhhhhhhhhhcc-cHHHHHHHHHHHcCccccCCcceeeec
Confidence 34555555 8999998754 33332455899999995 455999999999998 99999876654
No 127
>KOG2416|consensus
Probab=95.83 E-value=0.0081 Score=48.44 Aligned_cols=76 Identities=16% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcC-CCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc----CCCeE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGP-FGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY----LGQSF 114 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~-~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~----~~~~~ 114 (128)
......|||.||-.-.|.-+|+.++++ +|.|.+. ++ | +.+..|||.|.+. ++|..-+.+|||. -+.|.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~-eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSV-EEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccH-HHHHHHHHHHhccccCCCCCce
Confidence 344568999999999999999999995 5555554 22 3 3477999999554 4999999999996 34588
Q ss_pred EEEEeccc
Q psy8615 115 LKPSFNTY 122 (128)
Q Consensus 115 l~V~~~~~ 122 (128)
|.+.|.+.
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 99999764
No 128
>KOG0105|consensus
Probab=95.60 E-value=0.052 Score=38.06 Aligned_cols=59 Identities=25% Similarity=0.260 Sum_probs=51.4
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
..++.|.+||.+-++++|++....-|.|....+.+| |.+.|+|-..+ +.+-|+..|+..
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~e-DMkYAvr~ld~~ 173 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKE-DMKYAVRKLDDQ 173 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehh-hHHHHHHhhccc
Confidence 357899999999999999999999999998887766 37889997777 999999998874
No 129
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=95.37 E-value=0.069 Score=33.66 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=45.2
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecC-------CCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe-
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK-------QNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS- 113 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~-------~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~- 113 (128)
.+-|.|-+.|.. ....+-..|++||.|.+..-.... .......+-.+.|+++. +|.+|+.. ||. ++|.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~-~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPL-SAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHH-HHHHHHTT-TTEEETTCE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHH-HHHHHHHh-CCeEEcCcE
Confidence 445677788888 445566779999999876410000 00122447889998877 99999764 566 7765
Q ss_pred EEEEEeccc
Q psy8615 114 FLKPSFNTY 122 (128)
Q Consensus 114 ~l~V~~~~~ 122 (128)
.+.|.+-++
T Consensus 83 mvGV~~~~~ 91 (100)
T PF05172_consen 83 MVGVKPCDP 91 (100)
T ss_dssp EEEEEE-HH
T ss_pred EEEEEEcHH
Confidence 456777643
No 130
>KOG0112|consensus
Probab=95.29 E-value=0.0038 Score=52.23 Aligned_cols=77 Identities=9% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
...+||+|||+..+++.+++..|..+|.+.++.+-...- +.-.-|+|+.|.... .+-.|...+.+. ++.-.+++-+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~d-mtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTD-MTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-Ccccchhhhhhhccc-cCcccchhhcCCccccCccccccc
Confidence 356899999999999999999999999999988765543 444569999998877 777888888887 66666666665
No 131
>KOG4676|consensus
Probab=95.05 E-value=0.053 Score=41.92 Aligned_cols=77 Identities=9% Similarity=0.229 Sum_probs=57.0
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecC---CCCCcceEEEEEEecCHHHHHHHHHHhcCc--CCCeEEEEEe
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK---QNNRSKCFGTIIFMRKFFILTIRFDTANDY--LGQSFLKPSF 119 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~---~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~~~l~V~~ 119 (128)
.|.|.||.+.++.++++.+|+-.|.|..+++.... ......-.|||-|.+.. .+. +-++|..+ ++.-.|.+-|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~-sv~-vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQ-SVT-VAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCc-cee-HHhhhccceeeeeeEEEEec
Confidence 78999999999999999999999999998875422 11334558999997776 555 55777776 5555556666
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
...+
T Consensus 87 ~~~~ 90 (479)
T KOG4676|consen 87 GDEV 90 (479)
T ss_pred CCCC
Confidence 5544
No 132
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.69 E-value=0.14 Score=35.55 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=42.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcC-CCce---EEEEEEecCCCCC--cceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGP-FGTV---LSAKVFIDKQNNR--SKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~-~G~i---~~~~~~~~~~tg~--~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
..+++|-|++||+.++|+++.+.+++ ++.- ..+....+..+-+ ...-||+.|.+.+ +...=.+.++|+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~-~~~~F~~~~~g~ 78 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPE-DLLEFRDRFDGH 78 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCH-HHHHHHHHCTTE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHH-HHHHHHHhcCCc
Confidence 34679999999999999999998887 5544 3333223222222 2456899997777 888888889986
No 133
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.49 E-value=0.14 Score=35.86 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=42.6
Q ss_pred CHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc--Cc-CCCeEEEEEeccccc
Q psy8615 56 SDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN--DY-LGQSFLKPSFNTYVL 124 (128)
Q Consensus 56 ~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~--g~-~~~~~l~V~~~~~~~ 124 (128)
....|+++|..|+.+........ -+-..|.|.+.+ .|.+|...++ +. +.|+.+++-|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~-~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPE-SAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTT-HHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHH-HHHHHHHHhcccccccCCCceEEEEccccc
Confidence 34789999999998887765533 235678998888 9999999999 88 999999999986543
No 134
>KOG2591|consensus
Probab=94.43 E-value=0.12 Score=41.68 Aligned_cols=73 Identities=8% Similarity=0.056 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhc--CCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc---CCCeEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFG--PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY---LGQSFL 115 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~--~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~---~~~~~l 115 (128)
.+.|.+.+.-||..+-.|+++.+|. .|..+.+|.+-... -=||+|++.. ||+.|...|... +-||+|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~-DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDT-DAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecch-hHHHHHHHHHHHHHhhcCcch
Confidence 3457788999999999999999997 47788888764432 1279997776 999999888764 888887
Q ss_pred EEEecc
Q psy8615 116 KPSFNT 121 (128)
Q Consensus 116 ~V~~~~ 121 (128)
...+|.
T Consensus 245 mARIKa 250 (684)
T KOG2591|consen 245 MARIKA 250 (684)
T ss_pred hhhhhh
Confidence 666553
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.43 E-value=0.38 Score=28.34 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=36.8
Q ss_pred eEEEcCC--CCCCCHHHHHhhhcCCC-----ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 45 NLFIYHL--PPEFSDADLASMFGPFG-----TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 45 ~l~V~nL--p~~~~e~~l~~~f~~~G-----~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
++|| |+ -..++..+|..++..-+ .|-.+++... |.||+- ..+ .+...++.|++. +.|+.++
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev-~~~-~a~~v~~~l~~~~~~gk~v~ 70 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEV-PEE-VAEKVLEALNGKKIKGKKVR 70 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE--TT--HHHHHHHHTT--SSS----
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEE-CHH-HHHHHHHHhcCCCCCCeeEE
Confidence 4555 33 34678888888887654 3445554322 889998 455 799999999999 9999999
Q ss_pred EEe
Q psy8615 117 PSF 119 (128)
Q Consensus 117 V~~ 119 (128)
|..
T Consensus 71 ve~ 73 (74)
T PF03880_consen 71 VER 73 (74)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 136
>KOG2135|consensus
Probab=94.38 E-value=0.021 Score=44.96 Aligned_cols=73 Identities=18% Similarity=0.213 Sum_probs=52.7
Q ss_pred CeEEEcCCCCCCCH-HHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 44 ANLFIYHLPPEFSD-ADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 44 ~~l~V~nLp~~~~e-~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
+.|-+.-.|+.... .+|..-|.+||.|..|.+-+... .|.|+|.+.. +|-.| ...++. |.++.|||.|.|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~a-eag~a-~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRA-EAGEA-YASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccc-cccch-hccccceecCceeEEEEec
Confidence 33444445555444 68999999999999998755533 6789997776 66445 345556 999999999999
Q ss_pred ccc
Q psy8615 122 YVL 124 (128)
Q Consensus 122 ~~~ 124 (128)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 853
No 137
>KOG4574|consensus
Probab=94.27 E-value=0.024 Score=47.46 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=60.3
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc---CCCeEEEEEecc
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY---LGQSFLKPSFNT 121 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~---~~~~~l~V~~~~ 121 (128)
+.++.|.+-..+...|..+++.||.+.+....+|-. .+.|+|...+ .|..|.+.++|+ .-|-+-+|.|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~-sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVE-SAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHH-HHHHhhhhhcCCcccccCCceeEEecc
Confidence 345556666788889999999999999988777754 7899996666 999999999997 566678999998
Q ss_pred cccc
Q psy8615 122 YVLM 125 (128)
Q Consensus 122 ~~~~ 125 (128)
...|
T Consensus 373 ~~~~ 376 (1007)
T KOG4574|consen 373 TLPM 376 (1007)
T ss_pred cccc
Confidence 7665
No 138
>KOG2193|consensus
Probab=93.79 E-value=0.0023 Score=49.69 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=59.1
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEE-EecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKV-FIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~-~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
.+++-+.|+|+...++.|..++..||.+..|.. ..|++|-.- -|.|...+ .+..||++++|. +.+..++|.|-
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavv----nvty~~~~-~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVV----NVTYSAQQ-QHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHH----HHHHHHHH-HHHHHHHhhcchHhhhhhhhcccC
Confidence 457889999999999999999999999998864 445543322 26775666 999999999999 99988888873
No 139
>KOG4660|consensus
Probab=93.37 E-value=0.18 Score=40.44 Aligned_cols=55 Identities=13% Similarity=0.023 Sum_probs=42.1
Q ss_pred CCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-----CCCeEEEEEeccc
Q psy8615 67 FGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-----LGQSFLKPSFNTY 122 (128)
Q Consensus 67 ~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-----~~~~~l~V~~~~~ 122 (128)
.|.-..+.++.|..+-.+-|||||-|-+++ .+....++.||+ ...|+.++.|++-
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~-ai~~F~kAFnGk~W~~FnS~Kia~itYArI 472 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPE-AIIRFYKAFNGKKWEKFNSEKIASITYARI 472 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHH-HHHHHHHHHcCCchhhhcceeeeeeehhhh
Confidence 344455677788776677899999997777 888899999995 3458888888753
No 140
>KOG4210|consensus
Probab=92.99 E-value=0.045 Score=40.83 Aligned_cols=81 Identities=14% Similarity=0.092 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..+++|++++.+...+.....++..+|...............++|++.+.|...+ .+..++.....+ +.+..+...++
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks-~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKS-QFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHH-HHHHHHHhhhccccccccccCccc
Confidence 3678999999999999988888999998888877776677889999999997777 888787777665 66655555555
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
+..
T Consensus 166 ~~~ 168 (285)
T KOG4210|consen 166 TRR 168 (285)
T ss_pred ccc
Confidence 443
No 141
>KOG4285|consensus
Probab=91.30 E-value=2.4 Score=31.98 Aligned_cols=63 Identities=10% Similarity=0.210 Sum_probs=40.8
Q ss_pred EcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeE-EEEE
Q psy8615 48 IYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSF-LKPS 118 (128)
Q Consensus 48 V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~-l~V~ 118 (128)
|-+.|+.-..- +-..|++||.|.+... +...-|-+|.|+... +|.+|+..-...++|.. |.|.
T Consensus 202 VfGFppg~~s~-vL~~F~~cG~Vvkhv~------~~ngNwMhirYssr~-~A~KALskng~ii~g~vmiGVk 265 (350)
T KOG4285|consen 202 VFGFPPGQVSI-VLNLFSRCGEVVKHVT------PSNGNWMHIRYSSRT-HAQKALSKNGTIIDGDVMIGVK 265 (350)
T ss_pred EeccCccchhH-HHHHHHhhCeeeeeec------CCCCceEEEEecchh-HHHHhhhhcCeeeccceEEeee
Confidence 44556554443 4567999999987432 222348899998888 99999876443366644 4443
No 142
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=91.29 E-value=0.85 Score=30.77 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=50.0
Q ss_pred CCCCCeEEEcCCCCCCCH-HHHH---hhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEE
Q psy8615 40 GPEGANLFIYHLPPEFSD-ADLA---SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFL 115 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e-~~l~---~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l 115 (128)
++.-.+|.|.=|..++.. +|++ ..++.||+|.++..- | +--|.|.|.+.. .|-.|+.+++...-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~-SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDIT-SACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhH-HHHHHHHhhcCCCCCceE
Confidence 455567778777666443 4444 557789999997532 2 236889998777 888899988887555566
Q ss_pred EEEec
Q psy8615 116 KPSFN 120 (128)
Q Consensus 116 ~V~~~ 120 (128)
.-+|-
T Consensus 155 qCsWq 159 (166)
T PF15023_consen 155 QCSWQ 159 (166)
T ss_pred Eeecc
Confidence 66553
No 143
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.14 E-value=2.7 Score=24.40 Aligned_cols=55 Identities=11% Similarity=0.063 Sum_probs=39.7
Q ss_pred CCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 53 PEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 53 ~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
..++-++++..+..|+-. + +..|+ || | ||.|.+.. +|+++....+|. +.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~--I~~d~-tG----f-YIvF~~~~-Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-R--IRDDR-TG----F-YIVFNDSK-EAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-e--EEecC-CE----E-EEEECChH-HHHHHHHhcCCCEEEEEEEEe
Confidence 357778999999999743 2 33443 23 2 79997777 999999999998 76665543
No 144
>KOG4454|consensus
Probab=85.88 E-value=0.17 Score=36.44 Aligned_cols=83 Identities=19% Similarity=0.224 Sum_probs=61.8
Q ss_pred CCCeEEEcC----CCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC---------
Q psy8615 42 EGANLFIYH----LPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND--------- 108 (128)
Q Consensus 42 ~~~~l~V~n----Lp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g--------- 108 (128)
...+++.|+ |...++++.+...|+.-|++..+++..+.. |+++-++|+.+...+ ..-.+.....+
T Consensus 79 ~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~-~~P~~~~~y~~l~~~~~~~~ 156 (267)
T KOG4454|consen 79 EQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLC-AVPFALDLYQGLELFQKKVT 156 (267)
T ss_pred hhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhh-cCcHHhhhhcccCcCCCCcc
Confidence 356778888 888999999999999999999999988877 899999999986655 44445555443
Q ss_pred ---cCCCeEEEEEeccccccc
Q psy8615 109 ---YLGQSFLKPSFNTYVLMN 126 (128)
Q Consensus 109 ---~~~~~~l~V~~~~~~~~~ 126 (128)
+.||++|--++.+|+..|
T Consensus 157 ~ggk~Gg~~lpqsgfsPs~~~ 177 (267)
T KOG4454|consen 157 IGGKQGGKQLPQSGFSPSAYN 177 (267)
T ss_pred cccccCCCcCCcccCCccccc
Confidence 145566665665555443
No 145
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=80.59 E-value=12 Score=23.86 Aligned_cols=64 Identities=14% Similarity=0.088 Sum_probs=44.0
Q ss_pred CCeEE-EcCCCCCCCHHHHHhhhcCC-CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 43 GANLF-IYHLPPEFSDADLASMFGPF-GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 43 ~~~l~-V~nLp~~~~e~~l~~~f~~~-G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
++.+. +...|.-++-++|..+.+++ ..|..+++++|.. .++-...+.|.+.. .|..=.+.+||.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~-~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQE-SADEFYEEFNGK 77 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHH-HHHHHHHHhCCC
Confidence 34444 43445556666776666665 4567788888753 35667899997776 888888999996
No 146
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.57 E-value=15 Score=27.75 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=54.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecC-------CCCCcceEEEEEEecCHHHHH----HHHHHhc
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK-------QNNRSKCFGTIIFMRKFFILT----IRFDTAN 107 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~-------~tg~~~g~~fv~f~~~~~~a~----~Ai~~l~ 107 (128)
+....+.|...|+..+++=..+-.-|.+||+|.++.++.+. ...+......+.|-+.. .+. .-++.|.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~-~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSRE-ICLDFYNNVLQRLS 89 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechH-HHHHHHHHHHHHHH
Confidence 34455678888999888888888889999999999998765 11222345667775554 322 1223333
Q ss_pred Cc---CCCeEEEEEecc
Q psy8615 108 DY---LGQSFLKPSFNT 121 (128)
Q Consensus 108 g~---~~~~~l~V~~~~ 121 (128)
.+ +.-..|+++|..
T Consensus 90 EfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHhcCCcceeEEEEE
Confidence 33 677778877754
No 147
>KOG4410|consensus
Probab=73.28 E-value=19 Score=27.17 Aligned_cols=49 Identities=12% Similarity=0.037 Sum_probs=34.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCce-EEEEEEecCCCCCcceEEEEEEecC
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTV-LSAKVFIDKQNNRSKCFGTIIFMRK 95 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i-~~~~~~~~~~tg~~~g~~fv~f~~~ 95 (128)
+-.+-+|++|||.++.-.||+..+.+-+.+ .++.+ . .++|-||..|.+.
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K----GHFGKCFLHFGNR 377 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEee--e----cCCcceeEecCCc
Confidence 335679999999999999999988876633 22222 2 2366788888543
No 148
>KOG2318|consensus
Probab=72.15 E-value=19 Score=29.66 Aligned_cols=70 Identities=17% Similarity=0.309 Sum_probs=49.4
Q ss_pred CCCeEEEcCCCCC-CCHHHHHhhhcCC----CceEEEEEEecCC----------CC------------------------
Q psy8615 42 EGANLFIYHLPPE-FSDADLASMFGPF----GTVLSAKVFIDKQ----------NN------------------------ 82 (128)
Q Consensus 42 ~~~~l~V~nLp~~-~~e~~l~~~f~~~----G~i~~~~~~~~~~----------tg------------------------ 82 (128)
...+|-|.|+.|+ +.-.+|..+|..| |.|.+|.|....- .|
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 3458999999997 7778999888755 5888887543210 01
Q ss_pred ------------Ccc-eEEEEEEecCHHHHHHHHHHhcCc-CCC
Q psy8615 83 ------------RSK-CFGTIIFMRKFFILTIRFDTANDY-LGQ 112 (128)
Q Consensus 83 ------------~~~-g~~fv~f~~~~~~a~~Ai~~l~g~-~~~ 112 (128)
+.+ =||.|+|++.. .|.......+|+ ++.
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~-tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIE-TAKAVYEECDGIEFES 295 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCch-HHHHHHHhcCcceecc
Confidence 111 16788997777 888888889997 654
No 149
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.13 E-value=8.5 Score=24.80 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=26.6
Q ss_pred CCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHH
Q psy8615 55 FSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIR 102 (128)
Q Consensus 55 ~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~A 102 (128)
.+.+.|++.|+.|.+++ ++...++. .+.|++.|.|.+.-.--..|
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A 73 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNA 73 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHH
Confidence 35578999999898764 66666664 56899999997666333333
No 150
>KOG2891|consensus
Probab=67.52 E-value=5.3 Score=29.99 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.3
Q ss_pred CCHHHHHhhhcCCCceEEEEEE
Q psy8615 55 FSDADLASMFGPFGTVLSAKVF 76 (128)
Q Consensus 55 ~~e~~l~~~f~~~G~i~~~~~~ 76 (128)
.+|+.|+..|+.||.|+.+.++
T Consensus 173 pse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred ChHHHHHHHHHHhccceecCCc
Confidence 5778899999999999998874
No 151
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=65.67 E-value=9.5 Score=26.48 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=40.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f 92 (128)
.......+++++++......++...|..+|.+....+...........+.++.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 345567899999999999999999999999997776665554333444455433
No 152
>KOG0804|consensus
Probab=63.32 E-value=49 Score=26.56 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=51.7
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCC-CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPF-GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~-G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
.+.|+|-.+|--++-.||-.+..+| -.|..+++++|.. -++=...+.|.+.. +|..=.+.+||.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~-da~~Fy~efNGk 138 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQA-DADTFYEEFNGK 138 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccch-hHHHHHHHcCCC
Confidence 6788898999999999999998866 4788899999743 22335789997666 888888999996
No 153
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=62.99 E-value=21 Score=20.50 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=15.4
Q ss_pred HHHHhhhcCCCceEEEEEE
Q psy8615 58 ADLASMFGPFGTVLSAKVF 76 (128)
Q Consensus 58 ~~l~~~f~~~G~i~~~~~~ 76 (128)
.+||++|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999998766543
No 154
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=62.56 E-value=6.5 Score=24.17 Aligned_cols=25 Identities=8% Similarity=0.271 Sum_probs=21.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhc
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFG 65 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~ 65 (128)
...++|.|.|||....|++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 4467899999999999999998653
No 155
>KOG4483|consensus
Probab=61.00 E-value=22 Score=28.11 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHH
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDT 105 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~ 105 (128)
-...|=|.+.|.....+||-..|+.|+ .--+|+++-|. .+|..|++.. .|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~-~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVN-RAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchH-HHHHHhhc
Confidence 355778999999999999999999996 44567777664 7899996666 77767655
No 156
>KOG4365|consensus
Probab=59.23 E-value=1.7 Score=34.40 Aligned_cols=78 Identities=1% Similarity=-0.264 Sum_probs=56.5
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~ 122 (128)
++.|+..+|-..++.++.-+|..||.|..+.....-+.|-....+|+.-.. . ++..+|+-+.-. +.+..++|+.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~-~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-A-NGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-c-CcccccCHHHHhhhhhhhhhhhcCch
Confidence 456778899999999999999999999887765554445556678887743 3 577777766655 6666667766554
Q ss_pred c
Q psy8615 123 V 123 (128)
Q Consensus 123 ~ 123 (128)
+
T Consensus 82 s 82 (572)
T KOG4365|consen 82 S 82 (572)
T ss_pred h
Confidence 3
No 157
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=57.50 E-value=3.7 Score=22.91 Aligned_cols=33 Identities=24% Similarity=0.082 Sum_probs=18.3
Q ss_pred CcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 83 RSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 83 ~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
..+|||||..++..++....-..|++. -|++.+
T Consensus 6 ~~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~ 39 (58)
T PF08206_consen 6 HPKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVL 39 (58)
T ss_dssp -SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEE
T ss_pred EcCCCEEEEECCCCCCEEECHHHHCCCCCCCEEE
Confidence 358999999865232444455677777 455543
No 158
>KOG4008|consensus
Probab=45.03 E-value=16 Score=26.76 Aligned_cols=36 Identities=19% Similarity=0.304 Sum_probs=29.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSA 73 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~ 73 (128)
...+....+|+-|+|...+++.|..+.+.+|.+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 334556789999999999999999999999866554
No 159
>KOG2295|consensus
Probab=44.78 E-value=3.5 Score=33.60 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=51.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
..|.+|+.|++++.+-.+|..+...+.-..++.+..+..-.+..-+++|.|+... .-..|+..||+. +....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~-ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGT-NIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhcccc-chHHHHHHhhhccccccc
Confidence 3568999999999999999999998866666544333221233557889997766 677788888876 55444
No 160
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=42.09 E-value=57 Score=19.92 Aligned_cols=49 Identities=4% Similarity=0.041 Sum_probs=32.8
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEec
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMR 94 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~ 94 (128)
..-+|||+++..+-|.-...+.+..+.-.-+ ++.... ...||.|-.+.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~-m~~~~~--neqG~~~~t~G~ 73 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAV-MVWSDN--NEQGFDFRTLGD 73 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEE-EEEccC--CCCCEEEEEeCC
Confidence 4468999999999998888777755433322 233322 267899988743
No 161
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=41.64 E-value=16 Score=18.53 Aligned_cols=16 Identities=13% Similarity=0.300 Sum_probs=10.3
Q ss_pred CCCCHHHHHhhhcCCC
Q psy8615 53 PEFSDADLASMFGPFG 68 (128)
Q Consensus 53 ~~~~e~~l~~~f~~~G 68 (128)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4788999999998764
No 162
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=37.85 E-value=87 Score=18.45 Aligned_cols=66 Identities=8% Similarity=0.019 Sum_probs=39.2
Q ss_pred EEEcCCCCCCCHHHHHhhhcC-------CCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEE
Q psy8615 46 LFIYHLPPEFSDADLASMFGP-------FGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFL 115 (128)
Q Consensus 46 l~V~nLp~~~~e~~l~~~f~~-------~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l 115 (128)
+-..++|..++.++|.+...+ +..|+-++.-.++. .|-.|+.|+-+.+++.+....-.|..-++.+
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d----~~k~~Cly~Ap~~eaV~~~~~~aG~p~d~I~ 75 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSED----DGKIFCLYEAPDEEAVREHARRAGLPADRIT 75 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecC----CCeEEEEEECCCHHHHHHHHHHcCCCcceEE
Confidence 345678887888887776543 33444444444433 3456777777766666666665565333343
No 163
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=35.44 E-value=1.4e+02 Score=20.20 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=47.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHH-HHHHHHhcCcCCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFIL-TIRFDTANDYLGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a-~~Ai~~l~g~~~~~~l~ 116 (128)
...++++++.+|.-.+--|-+||.+.+-.--+-.+..+-.... .|=..|.|+..+++. ..|++..-..-.|+...
T Consensus 10 i~~Pe~~nvIiGqshFIkTVeDL~ealvt~vP~~kfgiAf~EA----sg~rLvR~~GND~eL~~lA~ena~~I~AGHvFV 85 (162)
T COG1839 10 IEIPEGVNVIIGQSHFIKTVEDLYEALVTAVPGLKFGIAFNEA----SGPRLVRYTGNDEELVKLAIENALKIGAGHVFV 85 (162)
T ss_pred ecCcCCceEEEeechhheeHHHHHHHHHhcCCCceEEEEeecc----cCCeeEEecCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 4557789999999999999999998775332222222222222 334567776665332 23444333333445545
Q ss_pred EEeccccccc
Q psy8615 117 PSFNTYVLMN 126 (128)
Q Consensus 117 V~~~~~~~~~ 126 (128)
|-.++.-+.|
T Consensus 86 I~lrna~PIN 95 (162)
T COG1839 86 ILLRNAYPIN 95 (162)
T ss_pred EEecCccchH
Confidence 5555444444
No 164
>PHA01632 hypothetical protein
Probab=34.41 E-value=28 Score=19.50 Aligned_cols=22 Identities=14% Similarity=0.369 Sum_probs=17.7
Q ss_pred eEEEcCCCCCCCHHHHHhhhcC
Q psy8615 45 NLFIYHLPPEFSDADLASMFGP 66 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~ 66 (128)
.+.|-.+|...+|++|+..+.+
T Consensus 18 yilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 18 YILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEehhhcCCCCCHHHHHHHHHH
Confidence 3456788999999999988764
No 165
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=32.72 E-value=1e+02 Score=18.07 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=35.2
Q ss_pred HHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 59 DLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 59 ~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
++++.|...| ++..+..+..+.++..--.=||+..... +.. +.++=. +|++.+.|.=
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~-~~~---~Il~ik~Lg~~~V~VEr 61 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAA-NGK---EILNIKTLGGQRVTVER 61 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecC-CCc---ceEeehhhCCeeEEEec
Confidence 4666777777 6777887777775554455677774333 222 244444 8887777653
No 166
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.07 E-value=31 Score=20.64 Aligned_cols=26 Identities=8% Similarity=-0.120 Sum_probs=19.8
Q ss_pred CcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 83 RSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 83 ~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
..+||-|||=.+.. +...|++.+.+.
T Consensus 42 ~lkGyIyVEA~~~~-~V~~ai~gi~~i 67 (84)
T PF03439_consen 42 SLKGYIYVEAERES-DVKEAIRGIRHI 67 (84)
T ss_dssp TSTSEEEEEESSHH-HHHHHHTT-TTE
T ss_pred CCceEEEEEeCCHH-HHHHHHhcccce
Confidence 46999999986666 888888777765
No 167
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=31.28 E-value=38 Score=20.77 Aligned_cols=49 Identities=8% Similarity=0.007 Sum_probs=29.4
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCC-CceEEEEEEecCCCCCcceEEEEEEec
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPF-GTVLSAKVFIDKQNNRSKCFGTIIFMR 94 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~-G~i~~~~~~~~~~tg~~~g~~fv~f~~ 94 (128)
..-+|||+++..+-|.-...+-+.| +.- ++-+.... ....||.|-.+..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~~--~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWSS--NTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEeC--CCCCCcEEEecCC
Confidence 4568999999988887666555542 221 12222222 2346799888754
No 168
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=29.98 E-value=78 Score=19.82 Aligned_cols=50 Identities=8% Similarity=-0.003 Sum_probs=32.0
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecC
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~ 95 (128)
..-+|||+++..+-|.-...+-+.++.-.-+ ++.. . ....||.|-.+..+
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~av-mv~~-~-~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVV-MAWA-T-NTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEE-EEEc-C-CCCCCcEEEecCCC
Confidence 4568999999998888777766655442222 2332 2 23349999888544
No 169
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=29.30 E-value=1.4e+02 Score=18.30 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=27.8
Q ss_pred EEEcCCCCCCCHHHHH---hhhcCCCceEEEEE--EecCCCCCcceEEEEEE
Q psy8615 46 LFIYHLPPEFSDADLA---SMFGPFGTVLSAKV--FIDKQNNRSKCFGTIIF 92 (128)
Q Consensus 46 l~V~nLp~~~~e~~l~---~~f~~~G~i~~~~~--~~~~~tg~~~g~~fv~f 92 (128)
.|+.+||.++.+.++. ..+..+.+-..+.. ......+.+.|++.+.+
T Consensus 13 a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 13 AFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 4889999998887654 55666654444433 22334467777775433
No 170
>PF02617 ClpS: ATP-dependent Clp protease adaptor protein ClpS; InterPro: IPR003769 In the bacterial cytosol, ATP-dependent protein degradation is performed by several different chaperone-protease pairs, including ClpAP. ClpS directly influences the ClpAP machine by binding to the N-terminal domain of the chaperone ClpA. The degradation of ClpAP substrates, both SsrA-tagged proteins and ClpA itself, is specifically inhibited by ClpS. ClpS modifies ClpA substrate specificity, potentially redirecting degradation by ClpAP toward aggregated proteins []. ClpS is a small alpha/beta protein that consists of three alpha-helices connected to three antiparallel beta-strands []. The protein has a globular shape, with a curved layer of three antiparallel alpha-helices over a twisted antiparallel beta-sheet. Dimerization of ClpS may occur through its N-terminal domain. This short extended N-terminal region in ClpS is followed by the central seven-residue beta-strand, which is flanked by two other beta-strands in a small beta-sheet. ; GO: 0030163 protein catabolic process; PDB: 3O2O_B 1MBU_D 3O2B_C 2WA9_D 3O1F_A 2W9R_A 1MG9_A 1MBX_C 2WA8_C 1R6O_D ....
Probab=29.06 E-value=74 Score=18.77 Aligned_cols=33 Identities=3% Similarity=-0.230 Sum_probs=21.3
Q ss_pred ceEEEEEEecCHHHHHHHHHHhcCc--CCCeEEEEE
Q psy8615 85 KCFGTIIFMRKFFILTIRFDTANDY--LGQSFLKPS 118 (128)
Q Consensus 85 ~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~~~l~V~ 118 (128)
.|.+.|...+.+ .|+.....+... ..|.||++.
T Consensus 47 ~G~avv~~~~~e-~ae~~~~~l~~~g~~~~~PL~~t 81 (82)
T PF02617_consen 47 EGRAVVGTGSRE-EAEEYAEKLQRAGRDSGHPLRAT 81 (82)
T ss_dssp HSEEEEEEEEHH-HHHHHHHHHHHHHHHTT---EEE
T ss_pred cCCEeeeeCCHH-HHHHHHHHHHHHhhccCCCeEEe
Confidence 566777654555 888887777766 788888876
No 171
>PF04008 Adenosine_kin: Adenosine specific kinase; InterPro: IPR007153 The structure of a member of this family from the hyperthermophilic archaeon Pyrobaculum aerophilum contains a modified histidine residue which is interpreted as stable phosphorylation. In vitro binding studies confirmed that adenosine and AMP but not ADP or ATP bind to the protein [].; PDB: 1VGG_A 1RLH_A 1WVQ_A 2GL0_F 2JB7_B 2EKM_C 2D16_D.
Probab=28.89 E-value=1.2e+02 Score=20.56 Aligned_cols=84 Identities=10% Similarity=-0.024 Sum_probs=42.0
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHH-HHHHHHHHhcCcCCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFF-ILTIRFDTANDYLGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~-~a~~Ai~~l~g~~~~~~l~V 117 (128)
+.++++++.+|.-.+--|-|||.+.+-.-.+-.+..+-....+| =+.|.++..++ -.+.|++.....--|+..-|
T Consensus 4 e~Pe~~N~IlGqsHFIKTvEDl~Ealv~svp~ikFGiAFcEASG----~~LvR~~GnD~eL~~~A~~na~~IgAGH~Fii 79 (155)
T PF04008_consen 4 EKPEGCNVILGQSHFIKTVEDLYEALVTSVPGIKFGIAFCEASG----PRLVRYSGNDEELIELAVKNALAIGAGHSFII 79 (155)
T ss_dssp ---TTEEEEEEEESSTTHHHHHHHHHHCCSTTSEEEEEEEETST----TTEEEEEESSHHHHHHHHHHHHHH--TTEEEE
T ss_pred cCCCCceEEEeccchhhhHHHHHHHHhhcCCCCeEEEEEeccCC----ceEEEecCCcHHHHHHHHHHHHHhcCCcEEEE
Confidence 45778999999999999999999887654333332222222222 23466655552 22333333333322334344
Q ss_pred Eeccccccc
Q psy8615 118 SFNTYVLMN 126 (128)
Q Consensus 118 ~~~~~~~~~ 126 (128)
=+++.-+.|
T Consensus 80 ~l~~a~PIN 88 (155)
T PF04008_consen 80 FLRNAFPIN 88 (155)
T ss_dssp EEESS-HHH
T ss_pred EecCcCChH
Confidence 444433334
No 172
>KOG4676|consensus
Probab=28.71 E-value=9.9 Score=29.86 Aligned_cols=46 Identities=13% Similarity=-0.039 Sum_probs=35.7
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEe
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFM 93 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~ 93 (128)
.+++|++|+..+-..++-+.|..+|.+...++-. |-..-+|-++|.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~ 197 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFR 197 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHh
Confidence 6799999999999999999999999987765532 233445667773
No 173
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=27.03 E-value=1.5e+02 Score=17.89 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=17.9
Q ss_pred eEEEEEEecCCCCCcceEEEEEEec
Q psy8615 70 VLSAKVFIDKQNNRSKCFGTIIFMR 94 (128)
Q Consensus 70 i~~~~~~~~~~tg~~~g~~fv~f~~ 94 (128)
|.++++..-...|+.+|||-|.|++
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 5667765555448889999998854
No 174
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=26.46 E-value=1.4e+02 Score=17.20 Aligned_cols=59 Identities=8% Similarity=-0.052 Sum_probs=36.7
Q ss_pred HHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 59 DLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 59 ~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
++.+.|...| ++..+.-+..+.+...--.-||+.+... + ..+.++=. +++..++|...+
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~-~---~k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKP-N---NKEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCc-c---ccceeehHhhCCeEEEEecCC
Confidence 4556666666 6777777777655555567788885543 3 22344444 888777776543
No 175
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=26.37 E-value=63 Score=18.64 Aligned_cols=30 Identities=17% Similarity=0.020 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCc---CCCeEEEEEeccccccc
Q psy8615 97 FILTIRFDTANDY---LGQSFLKPSFNTYVLMN 126 (128)
Q Consensus 97 ~~a~~Ai~~l~g~---~~~~~l~V~~~~~~~~~ 126 (128)
+.+++.+..+.|. ++|+..+|+-+.+.+.|
T Consensus 35 ~~~~Ri~Dfl~G~~~al~G~i~~i~~~~~l~~P 67 (73)
T PF04472_consen 35 EEAQRILDFLSGAVYALDGDIQKISEKVFLLTP 67 (73)
T ss_dssp HHHHHHHHHHHHHHHHTT-EEEEEETTEEEEE-
T ss_pred HHHHHHHHHHhchheeeCCEEEEEcCCEEEEEC
Confidence 3789999999995 99999999776655543
No 176
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=25.48 E-value=1.1e+02 Score=17.57 Aligned_cols=34 Identities=21% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEE
Q psy8615 55 FSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTI 90 (128)
Q Consensus 55 ~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv 90 (128)
.-|.+|...|-+-..|.++.+...+.-+ +|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~--~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIR--KGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeee--CCceeE
Confidence 4456788888888899999888776533 455554
No 177
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=25.00 E-value=85 Score=23.24 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=25.1
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEec
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFID 78 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~ 78 (128)
...|+|||..++..-+..++...-.+.+..++..
T Consensus 97 ~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 97 YKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 4569999999999999988876655545444443
No 178
>PRK11901 hypothetical protein; Reviewed
Probab=24.88 E-value=3.3e+02 Score=21.02 Aligned_cols=57 Identities=9% Similarity=0.026 Sum_probs=35.7
Q ss_pred CCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEE--EEEEecCHHHHHHHHHHhcCc
Q psy8615 50 HLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG--TIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 50 nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~--fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
.|--...++.|+.+..+++ +..+.+......|+. .|. +-+|.+.+ +|..|+..|-.-
T Consensus 249 QL~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~-eAk~Ai~sLPa~ 307 (327)
T PRK11901 249 QLSSASRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSA-EAKRAIATLPAE 307 (327)
T ss_pred EeecCCCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHH-HHHHHHHhCCHH
Confidence 3334456888888877765 344554444443443 343 44786666 999999988753
No 179
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=24.43 E-value=95 Score=16.30 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=20.9
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGT 69 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~ 69 (128)
..+|+.+.......++|.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46777777667888999999998886
No 180
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=23.16 E-value=2.1e+02 Score=19.29 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=35.2
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEe
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFM 93 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~ 93 (128)
.++|.|.-+..--+.--+.+|+.|- ++.++.+..+....+.+....+.+.
T Consensus 88 l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~ 138 (153)
T PF14401_consen 88 LSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLS 138 (153)
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChh
Confidence 4789998877777777888999885 7788877776543344555555553
No 181
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.88 E-value=4e+02 Score=21.57 Aligned_cols=65 Identities=14% Similarity=0.023 Sum_probs=39.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhc----CCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFG----PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN 107 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~----~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~ 107 (128)
+++..+-++.-..+.+..+|..+|- .+|-|.++.+-..+. -..+...++.|.+.+ ++..++..+.
T Consensus 187 ~~G~i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~-~a~~~~~~~~ 255 (499)
T PRK11230 187 LDGEALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVE-KAGLAVGDII 255 (499)
T ss_pred CCCcEEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHH-HHHHHHHHHH
Confidence 4455555554333334456766654 578888887766654 333456677885555 7777776654
No 182
>PRK15464 cold shock-like protein CspH; Provisional
Probab=22.23 E-value=47 Score=19.32 Aligned_cols=10 Identities=30% Similarity=0.059 Sum_probs=7.8
Q ss_pred ceEEEEEEec
Q psy8615 85 KCFGTIIFMR 94 (128)
Q Consensus 85 ~g~~fv~f~~ 94 (128)
+|||||+=++
T Consensus 16 KGfGFI~~~~ 25 (70)
T PRK15464 16 SGKGFIIPSD 25 (70)
T ss_pred CCeEEEccCC
Confidence 8999996543
No 183
>KOG4019|consensus
Probab=21.62 E-value=1.9e+02 Score=20.41 Aligned_cols=78 Identities=10% Similarity=-0.073 Sum_probs=46.4
Q ss_pred CCeEEEcCCCCCCCHH-----HHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe-EE
Q psy8615 43 GANLFIYHLPPEFSDA-----DLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS-FL 115 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~-----~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~-~l 115 (128)
.+.+++.+++.++..+ ....+|.+|.+....++.+ +.++--|.|.++. .|..|.-.++++ +.|+ .+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~-~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPE-AAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChh-HHHHHHHHhhhcccCCCceE
Confidence 5567788887653332 2334455544333222221 1223346887777 888888899998 7666 77
Q ss_pred EEEecccccccc
Q psy8615 116 KPSFNTYVLMNV 127 (128)
Q Consensus 116 ~V~~~~~~~~~~ 127 (128)
+.=|.-+.-++.
T Consensus 83 k~yfaQ~~~~~~ 94 (193)
T KOG4019|consen 83 KLYFAQPGHPES 94 (193)
T ss_pred EEEEccCCCccc
Confidence 777776665543
No 184
>PRK15463 cold shock-like protein CspF; Provisional
Probab=21.44 E-value=52 Score=19.07 Aligned_cols=10 Identities=20% Similarity=-0.064 Sum_probs=7.7
Q ss_pred ceEEEEEEec
Q psy8615 85 KCFGTIIFMR 94 (128)
Q Consensus 85 ~g~~fv~f~~ 94 (128)
+|||||+=++
T Consensus 16 kGfGFI~~~~ 25 (70)
T PRK15463 16 SGKGLITPSD 25 (70)
T ss_pred CceEEEecCC
Confidence 8999996533
No 185
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=21.40 E-value=1.1e+02 Score=24.50 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=26.3
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHhhhcCC----CceEEEEEE
Q psy8615 41 PEGANLFIYHLPPE-FSDADLASMFGPF----GTVLSAKVF 76 (128)
Q Consensus 41 ~~~~~l~V~nLp~~-~~e~~l~~~f~~~----G~i~~~~~~ 76 (128)
....+|-|-|+.|+ +...+|..+|+.| |.+.++.+.
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 33457888899996 7778999888854 567666653
No 186
>KOG1148|consensus
Probab=21.29 E-value=2.6e+02 Score=23.72 Aligned_cols=70 Identities=9% Similarity=0.022 Sum_probs=44.8
Q ss_pred CCCCHHHHHhhhcCCCceEEEEEEecCCC-----------------CCcceEEEEEEecCHH-----HHHHHHHHhcCcC
Q psy8615 53 PEFSDADLASMFGPFGTVLSAKVFIDKQN-----------------NRSKCFGTIIFMRKFF-----ILTIRFDTANDYL 110 (128)
Q Consensus 53 ~~~~e~~l~~~f~~~G~i~~~~~~~~~~t-----------------g~~~g~~fv~f~~~~~-----~a~~Ai~~l~g~~ 110 (128)
...+++-+++.+...|.-...+++..+.. -...|+||..|++... +--.+|+.|-.++
T Consensus 231 t~~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WL 310 (764)
T KOG1148|consen 231 TQHTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWL 310 (764)
T ss_pred ccchHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHh
Confidence 34567778888877665444444433321 2345789999976542 2235666666668
Q ss_pred CCeEEEEEeccc
Q psy8615 111 GQSFLKPSFNTY 122 (128)
Q Consensus 111 ~~~~l~V~~~~~ 122 (128)
|=.+-+|.|+..
T Consensus 311 G~~P~kvTysSD 322 (764)
T KOG1148|consen 311 GFEPYKVTYSSD 322 (764)
T ss_pred CCCceeeecchh
Confidence 889999998764
No 187
>KOG4840|consensus
Probab=21.03 E-value=1.9e+02 Score=21.49 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=34.3
Q ss_pred CeEEEcCCCCCCCH----HHHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 44 ANLFIYHLPPEFSD----ADLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 44 ~~l~V~nLp~~~~e----~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
-.||||+|-...-- ++|-..+..-+ .+..+. .. -.-.|||--..++..++-..+++++.+. +.-+..
T Consensus 38 ~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q--~~---Ssy~G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vV 110 (299)
T KOG4840|consen 38 KVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQ--LR---SSYNGYGTFSLKDDVEDLKCLLEHIQLCGFSTDVV 110 (299)
T ss_pred EEEEEcccCCCccccccHHHHHHHHhhccceeeeee--cc---ccccccccccccccHHHHHHHHHHhhccCcccceE
Confidence 46899999765332 23333332221 111111 11 1224677666655556888888877664 433333
No 188
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=20.91 E-value=35 Score=21.89 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=8.3
Q ss_pred CCeEEEcCCC
Q psy8615 43 GANLFIYHLP 52 (128)
Q Consensus 43 ~~~l~V~nLp 52 (128)
...||||++|
T Consensus 92 ~~~lyvGG~p 101 (131)
T PF00054_consen 92 DGPLYVGGLP 101 (131)
T ss_dssp CSEEEESSSS
T ss_pred ccCEEEccCC
Confidence 3459999999
No 189
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=20.84 E-value=56 Score=19.20 Aligned_cols=9 Identities=44% Similarity=0.475 Sum_probs=7.2
Q ss_pred cceEEEEEE
Q psy8615 84 SKCFGTIIF 92 (128)
Q Consensus 84 ~~g~~fv~f 92 (128)
.+|||||.=
T Consensus 12 ~KGfGFI~~ 20 (74)
T PRK09937 12 AKGFGFICP 20 (74)
T ss_pred CCCeEEEee
Confidence 389999965
No 190
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.21 E-value=1.1e+02 Score=20.38 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=33.4
Q ss_pred CCCCCCCHHHHHhhhcCC------CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC
Q psy8615 50 HLPPEFSDADLASMFGPF------GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND 108 (128)
Q Consensus 50 nLp~~~~e~~l~~~f~~~------G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g 108 (128)
-|+.+.+.++++++-..| -.|..+-+......|+..|-+ +.| .-+.||+.+.+
T Consensus 36 ~l~~~~~~~~vr~Fq~~f~kl~~dy~Vd~VvIk~R~~KGKfAGga-~~F-----KmEaaIQL~~~ 94 (138)
T PF11215_consen 36 SLSDDNSTEEVRKFQFTFAKLMEDYKVDKVVIKERATKGKFAGGA-VGF-----KMEAAIQLIDD 94 (138)
T ss_pred EcCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEecccCCCccCCc-hhH-----HHHHHHHhcCC
Confidence 456677777777664433 257777777766667766655 666 45556666653
No 191
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=20.19 E-value=54 Score=18.86 Aligned_cols=8 Identities=50% Similarity=0.509 Sum_probs=6.9
Q ss_pred ceEEEEEE
Q psy8615 85 KCFGTIIF 92 (128)
Q Consensus 85 ~g~~fv~f 92 (128)
+|||||+=
T Consensus 15 kGyGFI~~ 22 (69)
T PRK09507 15 KGFGFITP 22 (69)
T ss_pred CCcEEEec
Confidence 89999965
Done!