Query psy8615
Match_columns 128
No_of_seqs 145 out of 1291
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 23:21:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 9.4E-27 3.2E-31 146.3 10.4 83 40-123 16-99 (99)
2 2khc_A Testis-specific RNP-typ 99.9 2.2E-25 7.7E-30 143.4 12.1 88 33-121 30-118 (118)
3 3s8s_A Histone-lysine N-methyl 99.9 3.8E-24 1.3E-28 136.8 11.0 81 41-122 4-85 (110)
4 2cq0_A Eukaryotic translation 99.9 3.1E-23 1.1E-27 130.4 11.7 88 35-123 7-95 (103)
5 2e5h_A Zinc finger CCHC-type a 99.9 3E-23 1E-27 128.3 11.1 83 38-121 11-94 (94)
6 2cpz_A CUG triplet repeat RNA- 99.9 2.3E-23 8E-28 133.4 10.5 86 37-123 19-105 (115)
7 2cqc_A Arginine/serine-rich sp 99.9 4.4E-23 1.5E-27 127.6 11.0 84 38-122 10-94 (95)
8 2do4_A Squamous cell carcinoma 99.9 1.2E-22 4E-27 127.1 12.8 83 39-123 13-96 (100)
9 2la6_A RNA-binding protein FUS 99.9 5.3E-23 1.8E-27 128.5 11.0 82 39-121 9-99 (99)
10 2lkz_A RNA-binding protein 5; 99.9 1.5E-23 5.3E-28 130.8 8.3 80 43-123 9-95 (95)
11 3md1_A Nuclear and cytoplasmic 99.9 5.2E-23 1.8E-27 124.4 10.2 79 44-123 2-81 (83)
12 2dgo_A Cytotoxic granule-assoc 99.9 6.6E-23 2.3E-27 131.2 11.3 87 36-123 8-95 (115)
13 3bs9_A Nucleolysin TIA-1 isofo 99.9 3.5E-23 1.2E-27 126.2 9.3 82 41-123 4-86 (87)
14 1x5u_A Splicing factor 3B subu 99.9 4.6E-23 1.6E-27 129.9 9.9 86 38-124 10-96 (105)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.9 3.3E-23 1.1E-27 125.8 8.6 81 40-121 4-85 (85)
16 3p5t_L Cleavage and polyadenyl 99.9 8.2E-24 2.8E-28 130.3 5.9 81 44-125 2-85 (90)
17 2jrs_A RNA-binding protein 39; 99.9 9.7E-23 3.3E-27 129.6 10.7 86 37-123 20-106 (108)
18 2dnm_A SRP46 splicing factor; 99.9 8.8E-23 3E-27 128.3 10.2 84 39-123 9-93 (103)
19 2dnz_A Probable RNA-binding pr 99.9 9.3E-23 3.2E-27 126.3 10.1 83 41-124 3-86 (95)
20 3ns6_A Eukaryotic translation 99.9 1.1E-23 3.7E-28 132.3 5.3 80 42-122 5-92 (100)
21 3n9u_C Cleavage and polyadenyl 99.9 6E-23 2.1E-27 138.6 9.0 82 42-124 54-138 (156)
22 2dnh_A Bruno-like 5, RNA bindi 99.9 3.4E-22 1.1E-26 125.9 11.8 83 39-123 11-97 (105)
23 1p27_B RNA-binding protein 8A; 99.9 1E-22 3.4E-27 128.6 9.4 83 40-123 20-103 (106)
24 1x4h_A RNA-binding protein 28; 99.9 2.1E-22 7.2E-27 127.9 10.9 84 39-123 11-101 (111)
25 2cqb_A Peptidyl-prolyl CIS-tra 99.9 8.1E-23 2.8E-27 128.2 8.8 84 40-124 9-93 (102)
26 2d9p_A Polyadenylate-binding p 99.9 3.3E-22 1.1E-26 125.6 11.6 84 37-123 9-93 (103)
27 2cph_A RNA binding motif prote 99.9 1.6E-22 5.4E-27 127.7 10.1 85 38-123 10-97 (107)
28 2dgs_A DAZ-associated protein 99.9 1.8E-22 6.1E-27 126.0 10.2 82 40-123 7-89 (99)
29 1whw_A Hypothetical protein ri 99.9 1.3E-22 4.6E-27 126.5 9.6 82 41-123 6-88 (99)
30 2x1f_A MRNA 3'-END-processing 99.9 1.1E-22 3.6E-27 126.5 9.0 81 43-124 2-83 (96)
31 2lxi_A RNA-binding protein 10; 99.9 9.9E-24 3.4E-28 130.4 4.0 79 44-123 2-83 (91)
32 2dng_A Eukaryotic translation 99.9 4E-22 1.4E-26 125.4 11.1 82 39-123 11-93 (103)
33 2ywk_A Putative RNA-binding pr 99.9 2E-22 6.7E-27 124.8 9.6 82 39-122 12-94 (95)
34 2cpe_A RNA-binding protein EWS 99.9 1.8E-22 6.1E-27 128.8 9.4 85 38-123 10-103 (113)
35 2kxn_B Transformer-2 protein h 99.9 1.5E-22 5.1E-27 132.6 9.2 85 38-123 41-126 (129)
36 1u6f_A Tcubp1, RNA-binding pro 99.9 6.5E-22 2.2E-26 130.4 12.3 85 38-123 37-122 (139)
37 2div_A TRNA selenocysteine ass 99.9 9.8E-23 3.3E-27 127.2 7.8 82 41-123 7-94 (99)
38 2cqp_A RNA-binding protein 12; 99.9 1.5E-22 5.2E-27 126.1 8.6 84 40-124 12-96 (98)
39 3s7r_A Heterogeneous nuclear r 99.9 7.4E-22 2.5E-26 120.4 11.3 81 38-120 6-87 (87)
40 4f25_A Polyadenylate-binding p 99.9 1.9E-22 6.6E-27 129.5 8.9 77 43-122 5-82 (115)
41 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.9 4.8E-22 1.7E-26 130.8 10.9 84 36-120 56-140 (140)
42 1x5o_A RNA binding motif, sing 99.9 1.4E-21 4.7E-26 124.9 12.7 84 38-123 20-112 (114)
43 1oo0_B CG8781-PA, drosophila Y 99.9 1.6E-22 5.6E-27 128.5 8.3 84 39-123 22-106 (110)
44 2cqd_A RNA-binding region cont 99.9 3.7E-22 1.3E-26 128.0 9.9 86 37-123 11-96 (116)
45 2err_A Ataxin-2-binding protei 99.9 2.2E-22 7.6E-27 128.0 8.8 86 37-125 23-109 (109)
46 2dh8_A DAZ-associated protein 99.9 3.7E-22 1.3E-26 125.8 9.8 85 38-124 11-96 (105)
47 2cq4_A RNA binding motif prote 99.9 1.9E-22 6.3E-27 129.0 8.5 81 41-123 23-104 (114)
48 1x5t_A Splicing factor 3B subu 99.9 1.1E-22 3.7E-27 126.2 7.2 82 41-123 3-86 (96)
49 2dgp_A Bruno-like 4, RNA bindi 99.9 1.3E-22 4.5E-27 128.0 7.6 85 38-123 8-96 (106)
50 1x5s_A Cold-inducible RNA-bind 99.9 1.6E-22 5.5E-27 126.8 8.0 84 40-124 9-93 (102)
51 2cpf_A RNA binding motif prote 99.9 2.2E-22 7.6E-27 125.3 8.6 83 41-124 3-89 (98)
52 4a8x_A RNA-binding protein wit 99.9 1.8E-22 6E-27 123.2 7.8 82 41-123 2-85 (88)
53 1x4e_A RNA binding motif, sing 99.9 8.3E-23 2.8E-27 124.2 6.2 80 41-121 3-83 (85)
54 3ulh_A THO complex subunit 4; 99.9 5.9E-22 2E-26 125.2 10.1 80 40-121 26-106 (107)
55 2do0_A HnRNP M, heterogeneous 99.9 1.7E-21 5.8E-26 124.4 12.0 83 38-122 10-93 (114)
56 3ucg_A Polyadenylate-binding p 99.9 5.7E-22 2E-26 121.2 9.4 80 43-124 6-86 (89)
57 2fy1_A RNA-binding motif prote 99.9 3.7E-22 1.3E-26 128.4 8.9 83 40-124 4-87 (116)
58 1wi8_A EIF-4B, eukaryotic tran 99.9 6.6E-22 2.3E-26 124.5 9.9 81 40-123 12-94 (104)
59 2cqg_A TDP-43, TAR DNA-binding 99.9 1.7E-21 5.8E-26 122.4 11.3 85 36-123 8-93 (103)
60 2cpi_A CCR4-NOT transcription 99.9 8.6E-22 2.9E-26 125.6 10.1 86 38-124 10-102 (111)
61 2jwn_A Embryonic polyadenylate 99.9 1.1E-22 3.8E-27 131.8 6.0 81 42-124 35-116 (124)
62 2cq3_A RNA-binding protein 9; 99.9 2.1E-21 7E-26 122.0 11.6 85 38-125 10-95 (103)
63 2ek1_A RNA-binding protein 12; 99.9 2.2E-22 7.4E-27 124.6 7.0 81 41-122 13-94 (95)
64 2kt5_A RNA and export factor-b 99.9 3.7E-21 1.3E-25 124.7 12.8 85 39-125 31-116 (124)
65 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.4E-21 4.9E-26 122.7 10.4 84 38-124 10-94 (103)
66 1s79_A Lupus LA protein; RRM, 99.9 2.7E-22 9.3E-27 126.7 7.0 81 39-122 7-88 (103)
67 1p1t_A Cleavage stimulation fa 99.9 4.6E-22 1.6E-26 125.0 7.9 81 42-123 7-88 (104)
68 3ex7_B RNA-binding protein 8A; 99.9 6.2E-22 2.1E-26 128.5 8.4 84 39-123 18-102 (126)
69 2j76_E EIF-4B, EIF4B, eukaryot 99.9 2E-22 6.7E-27 126.4 5.6 83 38-123 14-98 (100)
70 2rs2_A Musashi-1, RNA-binding 99.9 9E-22 3.1E-26 125.3 8.7 84 38-123 20-104 (109)
71 2db1_A Heterogeneous nuclear r 99.9 9.7E-22 3.3E-26 126.8 8.9 83 39-124 13-99 (118)
72 2nlw_A Eukaryotic translation 99.9 1.4E-21 4.8E-26 123.5 9.3 82 38-122 10-99 (105)
73 2dgx_A KIAA0430 protein; RRM d 99.9 8.5E-22 2.9E-26 122.6 8.2 80 41-124 7-91 (96)
74 1h2v_Z 20 kDa nuclear CAP bind 99.9 2E-21 6.7E-26 130.5 10.4 83 40-123 36-119 (156)
75 2dgv_A HnRNP M, heterogeneous 99.9 1.5E-21 5.2E-26 120.1 9.0 81 41-124 6-87 (92)
76 2kn4_A Immunoglobulin G-bindin 99.9 1.2E-21 4E-26 131.6 9.2 83 40-123 67-150 (158)
77 2dhg_A TRNA selenocysteine ass 99.9 1E-21 3.5E-26 123.5 8.2 83 39-123 5-90 (104)
78 2dgw_A Probable RNA-binding pr 99.9 3.6E-21 1.2E-25 118.4 10.4 80 40-123 7-87 (91)
79 1wez_A HnRNP H', FTP-3, hetero 99.9 4.5E-21 1.5E-25 120.8 10.7 80 40-123 12-92 (102)
80 1uaw_A Mouse-musashi-1; RNP-ty 99.9 5.9E-22 2E-26 118.1 6.2 75 44-120 1-76 (77)
81 1x4b_A Heterogeneous nuclear r 99.9 1.1E-21 3.9E-26 125.7 7.9 81 41-123 25-106 (116)
82 1wg5_A Heterogeneous nuclear r 99.9 3.2E-21 1.1E-25 121.7 9.7 83 40-125 12-96 (104)
83 1wel_A RNA-binding protein 12; 99.9 2.1E-21 7E-26 126.0 8.8 82 40-123 22-104 (124)
84 2cq1_A PTB-like protein L; RRM 99.9 7.2E-21 2.5E-25 119.8 11.1 82 37-125 9-93 (101)
85 2cpy_A RNA-binding protein 12; 99.9 1.4E-21 4.9E-26 125.1 7.8 83 40-125 12-96 (114)
86 2mss_A Protein (musashi1); RNA 99.9 5E-22 1.7E-26 118.1 5.2 74 45-120 1-75 (75)
87 3q2s_C Cleavage and polyadenyl 99.9 1.6E-21 5.5E-26 138.9 8.8 81 42-123 67-150 (229)
88 2lea_A Serine/arginine-rich sp 99.9 3.9E-22 1.3E-26 131.6 4.7 86 38-124 42-128 (135)
89 1x4a_A Splicing factor, argini 99.9 8.1E-21 2.8E-25 120.4 10.5 81 39-123 18-99 (109)
90 2fc8_A NCL protein; structure 99.8 1.1E-20 3.6E-25 118.4 10.8 83 37-123 9-92 (102)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.8 4.6E-21 1.6E-25 130.0 9.8 83 40-123 69-152 (165)
92 2hgl_A HNRPF protein, heteroge 99.8 2.5E-21 8.6E-26 128.0 8.1 84 39-125 40-127 (136)
93 2fc9_A NCL protein; structure 99.8 9.1E-21 3.1E-25 118.6 10.3 80 39-123 11-91 (101)
94 2m2b_A RNA-binding protein 10; 99.8 1E-21 3.5E-26 128.6 6.1 84 38-123 18-108 (131)
95 2dis_A Unnamed protein product 99.8 1.5E-21 5E-26 123.8 6.5 82 41-123 6-92 (109)
96 1sjq_A Polypyrimidine tract-bi 99.8 1.3E-21 4.5E-26 123.9 6.3 79 40-125 13-94 (105)
97 2ki2_A SS-DNA binding protein 99.8 5.5E-22 1.9E-26 121.7 3.7 79 44-124 2-81 (90)
98 2lmi_A GRSF-1, G-rich sequence 99.8 1.5E-21 5.1E-26 123.8 5.0 83 39-124 7-93 (107)
99 4f02_A Polyadenylate-binding p 99.8 1.1E-20 3.7E-25 132.6 9.8 81 42-123 14-95 (213)
100 3r27_A HnRNP L, heterogeneous 99.8 1.1E-20 3.7E-25 118.7 8.7 76 41-123 19-97 (100)
101 2wbr_A GW182, gawky, LD47780P; 99.8 6.7E-21 2.3E-25 116.6 7.3 74 43-123 7-81 (89)
102 2j8a_A Histone-lysine N-methyl 99.8 6.9E-21 2.4E-25 124.0 7.8 82 43-124 2-97 (136)
103 1x4d_A Matrin 3; structural ge 99.8 8.8E-21 3E-25 119.7 7.7 76 40-122 12-91 (102)
104 2krb_A Eukaryotic translation 99.8 1.9E-21 6.6E-26 117.3 4.4 73 43-118 1-81 (81)
105 3md3_A Nuclear and cytoplasmic 99.8 4.7E-20 1.6E-24 123.3 11.6 83 39-122 83-166 (166)
106 2cpj_A Non-POU domain-containi 99.8 3.4E-20 1.2E-24 115.7 10.2 80 38-124 10-90 (99)
107 2a3j_A U1 small nuclear ribonu 99.8 8.3E-21 2.8E-25 124.1 7.7 80 40-123 26-110 (127)
108 2ad9_A Polypyrimidine tract-bi 99.8 1.9E-20 6.3E-25 121.1 9.0 79 40-125 28-109 (119)
109 2dnn_A RNA-binding protein 12; 99.8 1.2E-20 4.2E-25 120.3 7.9 78 42-123 15-93 (109)
110 1fj7_A Nucleolin RBD1, protein 99.8 8.7E-22 3E-26 123.3 2.4 81 41-124 15-96 (101)
111 1wex_A Hypothetical protein (r 99.8 3.7E-20 1.3E-24 117.1 9.8 78 40-124 12-92 (104)
112 3lqv_A PRE-mRNA branch site pr 99.8 2.6E-20 8.8E-25 119.1 9.1 79 41-123 6-85 (115)
113 2ytc_A PRE-mRNA-splicing facto 99.8 3.5E-20 1.2E-24 112.4 9.1 76 39-121 8-85 (85)
114 2lcw_A RNA-binding protein FUS 99.7 3.8E-22 1.3E-26 128.0 0.0 83 40-123 4-95 (116)
115 2cpx_A Hypothetical protein FL 99.8 4.7E-21 1.6E-25 122.5 5.0 83 40-123 22-105 (115)
116 1why_A Hypothetical protein ri 99.8 6.6E-20 2.3E-24 114.0 9.9 76 41-123 15-93 (97)
117 1x4c_A Splicing factor, argini 99.8 7.2E-20 2.5E-24 116.1 10.1 75 41-123 13-93 (108)
118 2jvo_A Nucleolar protein 3; nu 99.8 3.5E-20 1.2E-24 117.8 8.5 77 38-123 26-103 (108)
119 2la4_A Nuclear and cytoplasmic 99.8 1.9E-20 6.4E-25 117.2 7.1 76 40-122 24-100 (101)
120 1x4f_A Matrin 3; structural ge 99.8 4.3E-20 1.5E-24 118.2 8.9 76 40-122 22-101 (112)
121 2g4b_A Splicing factor U2AF 65 99.8 1.1E-19 3.8E-24 122.5 11.1 80 41-121 92-172 (172)
122 1nu4_A U1A RNA binding domain; 99.8 8.1E-21 2.8E-25 117.9 5.0 80 40-123 5-89 (97)
123 1fxl_A Paraneoplastic encephal 99.8 8E-20 2.7E-24 122.3 10.2 80 43-123 2-82 (167)
124 2f3j_A RNA and export factor b 99.8 3E-20 1E-24 127.6 8.2 83 41-125 86-169 (177)
125 1iqt_A AUF1, heterogeneous nuc 99.8 4.6E-21 1.6E-25 113.7 3.6 74 45-120 1-75 (75)
126 2xs2_A Deleted in azoospermia- 99.8 1.4E-20 4.7E-25 118.0 5.8 78 41-122 7-85 (102)
127 2xnq_A Nuclear polyadenylated 99.8 6.8E-20 2.3E-24 114.3 8.9 78 37-123 16-95 (97)
128 2e5j_A Methenyltetrahydrofolat 99.8 7E-20 2.4E-24 113.9 8.8 78 40-123 16-94 (97)
129 2dnq_A RNA-binding protein 4B; 99.8 7.7E-20 2.6E-24 112.2 8.7 75 41-124 6-81 (90)
130 1fjc_A Nucleolin RBD2, protein 99.8 2.8E-20 9.7E-25 115.3 6.7 78 40-123 13-91 (96)
131 2qfj_A FBP-interacting repress 99.8 1.2E-19 4.2E-24 126.3 10.7 85 41-126 123-208 (216)
132 2yh0_A Splicing factor U2AF 65 99.8 2.7E-19 9.2E-24 123.1 12.1 83 41-124 112-195 (198)
133 1wf1_A RNA-binding protein RAL 99.8 2E-19 6.9E-24 114.2 10.4 74 41-123 25-100 (110)
134 1x4g_A Nucleolysin TIAR; struc 99.8 4.7E-20 1.6E-24 117.0 7.5 78 40-124 22-100 (109)
135 1b7f_A Protein (SXL-lethal pro 99.8 6.5E-20 2.2E-24 123.1 8.6 81 42-123 2-83 (168)
136 2jvr_A Nucleolar protein 3; RN 99.8 2.5E-20 8.7E-25 119.2 6.1 78 41-123 26-105 (111)
137 2hgm_A HNRPF protein, heteroge 99.8 4.7E-20 1.6E-24 120.4 6.8 81 41-125 40-123 (126)
138 2i2y_A Fusion protein consists 99.8 7.9E-20 2.7E-24 121.9 7.8 80 38-123 68-148 (150)
139 3zzy_A Polypyrimidine tract-bi 99.8 2.6E-19 8.9E-24 117.3 9.9 79 43-127 28-110 (130)
140 2dha_A FLJ20171 protein; RRM d 99.8 3.1E-20 1.1E-24 120.8 5.5 81 41-124 21-106 (123)
141 2hvz_A Splicing factor, argini 99.8 3E-20 1E-24 116.2 5.2 74 44-123 1-75 (101)
142 2dgt_A RNA-binding protein 30; 99.8 2.6E-19 8.8E-24 110.3 9.1 77 39-124 6-83 (92)
143 2e44_A Insulin-like growth fac 99.8 9.7E-20 3.3E-24 112.8 6.9 78 41-123 13-92 (96)
144 2cpd_A Apobec-1 stimulating pr 99.8 6.9E-19 2.3E-23 109.7 10.8 75 40-123 12-89 (99)
145 3pgw_S U1-70K; protein-RNA com 99.8 2.4E-19 8.3E-24 138.1 10.5 83 41-124 100-183 (437)
146 1whx_A Hypothetical protein ri 99.8 8.4E-20 2.9E-24 116.5 6.6 76 42-124 9-85 (111)
147 2hgn_A Heterogeneous nuclear r 99.8 2.2E-20 7.6E-25 123.8 3.8 82 40-125 43-125 (139)
148 1wg1_A KIAA1579 protein, homol 99.8 2.5E-19 8.6E-24 109.6 8.2 76 42-125 4-80 (88)
149 1l3k_A Heterogeneous nuclear r 99.8 2.6E-19 9E-24 122.9 9.0 83 39-123 9-92 (196)
150 1x5p_A Negative elongation fac 99.8 9.6E-19 3.3E-23 108.7 10.7 76 40-124 12-88 (97)
151 2kvi_A Nuclear polyadenylated 99.8 1.4E-19 4.9E-24 112.4 6.9 75 40-123 7-83 (96)
152 3egn_A RNA-binding protein 40; 99.8 2.5E-20 8.4E-25 123.5 3.5 83 40-123 42-130 (143)
153 2dgu_A Heterogeneous nuclear r 99.8 3.3E-19 1.1E-23 112.0 8.5 74 41-123 9-83 (103)
154 2dnp_A RNA-binding protein 14; 99.8 2.4E-19 8.2E-24 110.0 7.4 75 40-123 6-81 (90)
155 1b7f_A Protein (SXL-lethal pro 99.8 1.2E-18 4E-23 116.9 11.1 80 40-120 86-168 (168)
156 1sjr_A Polypyrimidine tract-bi 99.8 3.8E-19 1.3E-23 120.6 8.6 80 43-127 46-128 (164)
157 2cjk_A Nuclear polyadenylated 99.8 1.7E-19 5.7E-24 121.1 6.3 80 42-123 86-166 (167)
158 3tyt_A Heterogeneous nuclear r 99.8 4.8E-19 1.6E-23 124.1 8.6 76 41-122 2-79 (205)
159 4f02_A Polyadenylate-binding p 99.8 6.2E-19 2.1E-23 123.6 9.0 77 43-122 103-180 (213)
160 2e5i_A Heterogeneous nuclear r 99.8 5.5E-18 1.9E-22 110.3 12.6 76 45-127 27-106 (124)
161 1l3k_A Heterogeneous nuclear r 99.8 1.4E-18 4.9E-23 119.2 10.0 81 41-123 102-183 (196)
162 2cqh_A IGF-II mRNA-binding pro 99.8 2.4E-19 8.3E-24 110.5 5.3 75 41-123 6-83 (93)
163 2diu_A KIAA0430 protein; struc 99.8 1E-18 3.5E-23 108.0 7.6 71 42-123 8-84 (96)
164 2e5g_A U6 snRNA-specific termi 99.8 1E-18 3.6E-23 108.0 7.8 74 43-123 8-82 (94)
165 2qfj_A FBP-interacting repress 99.8 8.4E-19 2.9E-23 122.1 8.1 81 42-123 27-108 (216)
166 1fxl_A Paraneoplastic encephal 99.8 1.9E-18 6.6E-23 115.5 9.4 79 41-120 86-167 (167)
167 3d2w_A TAR DNA-binding protein 99.8 1.5E-18 5.2E-23 106.6 8.1 75 39-123 7-84 (89)
168 2cq2_A Hypothetical protein LO 99.8 4.4E-19 1.5E-23 113.8 5.4 77 41-124 23-107 (114)
169 3md3_A Nuclear and cytoplasmic 99.8 1.2E-18 4.1E-23 116.4 7.7 78 44-123 1-79 (166)
170 2dnl_A Cytoplasmic polyadenyla 99.8 1E-18 3.5E-23 111.7 6.9 75 41-118 6-83 (114)
171 3nmr_A Cugbp ELAV-like family 99.8 3E-18 1E-22 115.5 9.1 81 42-123 2-88 (175)
172 3nmr_A Cugbp ELAV-like family 99.8 3.2E-18 1.1E-22 115.3 8.8 78 41-120 93-174 (175)
173 2voo_A Lupus LA protein; RNA-b 99.8 4.7E-18 1.6E-22 118.1 9.6 78 43-122 109-186 (193)
174 2cjk_A Nuclear polyadenylated 99.8 1.9E-18 6.6E-23 115.9 7.1 79 42-123 2-81 (167)
175 3pgw_A U1-A; protein-RNA compl 99.7 7.8E-18 2.7E-22 122.0 10.3 81 39-123 5-90 (282)
176 3beg_B Splicing factor, argini 99.7 1.5E-18 5E-23 111.3 5.6 73 42-122 15-93 (115)
177 1fje_B Nucleolin RBD12, protei 99.7 8.4E-18 2.9E-22 113.7 9.3 78 40-123 96-174 (175)
178 2pe8_A Splicing factor 45; RRM 99.7 1.1E-17 3.9E-22 105.8 9.1 80 42-122 7-93 (105)
179 2bz2_A Negative elongation fac 99.7 8.7E-18 3E-22 108.8 8.1 76 40-124 36-112 (121)
180 3pgw_A U1-A; protein-RNA compl 99.7 2.7E-17 9.2E-22 119.1 11.6 77 40-122 204-282 (282)
181 3smz_A Protein raver-1, ribonu 99.7 1.6E-17 5.5E-22 120.4 10.2 82 42-124 94-176 (284)
182 3smz_A Protein raver-1, ribonu 99.7 1.8E-17 6E-22 120.2 10.0 82 40-123 181-264 (284)
183 2ghp_A U4/U6 snRNA-associated 99.7 8.5E-18 2.9E-22 122.3 7.4 82 40-123 207-291 (292)
184 1wf0_A TDP-43, TAR DNA-binding 99.7 4.1E-18 1.4E-22 104.0 4.5 73 41-123 3-78 (88)
185 2hzc_A Splicing factor U2AF 65 99.7 8.1E-18 2.8E-22 102.2 5.4 69 42-118 5-85 (87)
186 2adc_A Polypyrimidine tract-bi 99.7 1.5E-17 5.1E-22 117.7 7.3 80 38-123 29-110 (229)
187 3u1l_A PRE-mRNA-splicing facto 99.7 4.2E-17 1.4E-21 116.7 7.0 78 40-124 131-230 (240)
188 1qm9_A Polypyrimidine tract-bi 99.7 3.6E-17 1.2E-21 112.8 6.0 76 42-123 2-79 (198)
189 1fje_B Nucleolin RBD12, protei 99.7 5.5E-18 1.9E-22 114.6 1.6 81 39-122 9-90 (175)
190 1qm9_A Polypyrimidine tract-bi 99.7 9.2E-17 3.1E-21 110.8 7.4 78 41-124 118-198 (198)
191 2adc_A Polypyrimidine tract-bi 99.7 1.3E-16 4.4E-21 112.9 8.3 78 41-124 149-229 (229)
192 3sde_A Paraspeckle component 1 99.7 2.5E-16 8.6E-21 113.4 8.1 76 40-122 19-95 (261)
193 2dit_A HIV TAT specific factor 99.7 7.5E-16 2.6E-20 98.1 9.5 78 41-123 13-102 (112)
194 3sde_A Paraspeckle component 1 99.7 4.5E-16 1.5E-20 112.1 9.0 79 42-122 95-178 (261)
195 3tyt_A Heterogeneous nuclear r 99.6 1E-16 3.6E-21 112.2 5.3 70 41-113 121-193 (205)
196 2yh0_A Splicing factor U2AF 65 99.6 2.9E-17 9.8E-22 112.9 1.6 74 42-123 3-88 (198)
197 2ghp_A U4/U6 snRNA-associated 99.6 2.7E-16 9.1E-21 114.4 6.6 80 42-123 116-197 (292)
198 1jmt_A Splicing factor U2AF 35 99.6 3.8E-17 1.3E-21 103.2 1.6 71 48-120 20-103 (104)
199 3ue2_A Poly(U)-binding-splicin 99.6 8.6E-16 2.9E-20 99.1 7.8 80 42-122 19-108 (118)
200 3v4m_A Splicing factor U2AF 65 99.6 6.1E-16 2.1E-20 97.8 6.7 79 43-122 5-96 (105)
201 2g4b_A Splicing factor U2AF 65 99.6 2.3E-15 7.9E-20 101.2 5.8 74 42-123 3-88 (172)
202 3tht_A Alkylated DNA repair pr 99.5 1.1E-14 3.8E-19 109.0 7.3 77 40-123 15-99 (345)
203 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.7E-14 9.3E-19 89.5 7.0 65 53-124 27-91 (100)
204 3s6e_A RNA-binding protein 39; 99.4 1.4E-13 4.8E-18 88.1 5.3 75 43-122 7-92 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 3.7E-13 1.2E-17 82.4 6.2 74 40-123 4-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 8.8E-12 3E-16 80.4 8.1 75 39-119 14-92 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.3 4.1E-12 1.4E-16 78.1 5.4 74 39-122 11-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.3 1.2E-11 4.1E-16 86.8 7.6 66 55-121 141-211 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.4 1.4E-06 4.9E-11 54.7 7.1 70 42-118 20-95 (117)
210 1wey_A Calcipressin 1; structu 97.9 3.9E-05 1.3E-09 47.7 6.1 74 43-123 5-84 (104)
211 1whv_A Poly(A)-specific ribonu 97.6 0.00041 1.4E-08 42.6 7.7 55 43-107 16-70 (100)
212 3ctr_A Poly(A)-specific ribonu 97.4 0.00062 2.1E-08 41.9 6.7 53 45-107 8-60 (101)
213 1uw4_A UPF3X; nonsense mediate 97.4 0.0021 7.1E-08 39.0 8.5 65 44-109 2-68 (91)
214 2kn4_A Immunoglobulin G-bindin 96.6 0.0037 1.3E-07 40.8 4.9 35 72-109 2-36 (158)
215 2dhx_A Poly (ADP-ribose) polym 96.4 0.02 6.7E-07 35.4 7.3 67 42-118 7-79 (104)
216 1wwh_A Nucleoporin 35, nucleop 96.3 0.01 3.4E-07 37.7 5.5 75 42-125 23-100 (119)
217 2i2y_A Fusion protein consists 95.7 0.0042 1.4E-07 40.3 2.0 39 82-122 10-50 (150)
218 3pq1_A Poly(A) RNA polymerase; 95.4 0.0072 2.5E-07 46.8 2.5 51 43-100 53-103 (464)
219 2l08_A Regulator of nonsense t 95.4 0.025 8.7E-07 34.5 4.3 66 43-109 9-76 (97)
220 3d45_A Poly(A)-specific ribonu 90.3 0.7 2.4E-05 36.1 6.4 55 43-107 440-494 (507)
221 3p3d_A Nucleoporin 53; structu 87.5 0.46 1.6E-05 30.5 2.9 75 43-120 7-96 (132)
222 4f25_A Polyadenylate-binding p 83.9 0.31 1E-05 29.9 0.8 20 40-59 94-113 (115)
223 2g0c_A ATP-dependent RNA helic 57.9 6.1 0.00021 22.1 2.0 58 54-121 12-75 (76)
224 3mfb_A Uncharacterized protein 51.6 31 0.0011 22.6 4.8 37 55-91 3-42 (157)
225 1rlh_A Conserved hypothetical 42.7 62 0.0021 21.3 5.1 82 36-121 19-101 (173)
226 4e8u_A Putative uncharacterize 41.8 75 0.0026 21.1 7.4 56 45-103 14-80 (172)
227 2ekm_A Hypothetical protein ST 41.6 72 0.0025 20.9 5.9 80 38-121 10-90 (162)
228 1wvq_A Hypothetical protein PA 41.6 73 0.0025 20.9 6.0 80 38-121 13-93 (167)
229 3ts2_A Protein LIN-28 homolog 40.8 6.4 0.00022 25.5 0.2 28 58-93 2-29 (148)
230 4eyt_A Telomerase associated p 31.9 83 0.0028 18.7 7.3 59 42-109 11-69 (129)
231 1vgg_A Conserved hypothetical 29.1 80 0.0027 20.6 4.0 80 38-121 8-88 (161)
232 3lpe_A Putative transcription 27.1 39 0.0013 19.7 2.1 25 84-109 49-73 (92)
233 3fut_A Dimethyladenosine trans 23.8 44 0.0015 23.5 2.2 33 44-77 111-143 (271)
234 1igq_A Transcriptional repress 23.0 65 0.0022 17.6 2.3 23 71-94 20-42 (62)
235 2i9x_A Putative septation prot 22.9 1.2E+02 0.0041 17.6 3.9 26 69-94 5-30 (87)
236 1hyw_A GPW, head-TO-tail joini 21.9 1E+02 0.0034 17.1 3.0 23 98-122 9-31 (68)
237 3uzu_A Ribosomal RNA small sub 21.1 22 0.00077 25.1 0.2 35 44-78 115-149 (279)
238 2k5n_A Putative cold-shock pro 20.8 38 0.0013 19.0 1.1 10 85-94 14-23 (74)
239 3ulj_A LIN28B, DNA-binding pro 20.3 87 0.003 18.3 2.7 8 85-92 20-27 (90)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.94 E-value=9.4e-27 Score=146.28 Aligned_cols=83 Identities=27% Similarity=0.350 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
..++++|||+|||+++++++|+++|++||.|.+++++.|+.||+++|||||+|.+.+ +|.+|++.|||. ++|+.|+|+
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~-~A~~Ai~~lng~~~~gr~l~V~ 94 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAK-DAERAINTLNGLRLQSKTIKVS 94 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHH-HHHHHHHHhCCCEECCEEEEEE
Confidence 355899999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|++|+
T Consensus 95 ~AkPS 99 (99)
T 4fxv_A 95 YARPS 99 (99)
T ss_dssp ECCBC
T ss_pred EeeCC
Confidence 99974
No 2
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.93 E-value=2.2e-25 Score=143.39 Aligned_cols=88 Identities=52% Similarity=0.876 Sum_probs=80.5
Q ss_pred CCCCCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC
Q psy8615 33 SSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG 111 (128)
Q Consensus 33 ~~~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~ 111 (128)
....+.+..+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|++|++.|||. ++
T Consensus 30 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~ 108 (118)
T 2khc_A 30 AAGKQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPD-SAQVAIKAMNGFQVG 108 (118)
T ss_dssp CCSSSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSH-HHHHHHHHCCCCEET
T ss_pred cCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHH-HHHHHHHHcCCCEEC
Confidence 3444556677899999999999999999999999999999999999999999999999998888 999999999999 99
Q ss_pred CeEEEEEecc
Q psy8615 112 QSFLKPSFNT 121 (128)
Q Consensus 112 ~~~l~V~~~~ 121 (128)
|+.|+|.|++
T Consensus 109 g~~l~V~~ak 118 (118)
T 2khc_A 109 TKRLKVQLKK 118 (118)
T ss_dssp TEECCEEEC-
T ss_pred CEEEEEEecC
Confidence 9999999975
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.91 E-value=3.8e-24 Score=136.76 Aligned_cols=81 Identities=7% Similarity=0.104 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
++.++|||+|||+++++++|+++|++||.|.+++++.|+.||+++|||||+|++.+ +|.+|++.|||. ++|+.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~-~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTR-GAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHH-HHHHHHHHhCCCEECCeEEEEEE
Confidence 44679999999999999999999999999999999999999999999999997777 999999999999 9999999999
Q ss_pred ccc
Q psy8615 120 NTY 122 (128)
Q Consensus 120 ~~~ 122 (128)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=3.1e-23 Score=130.38 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=80.9
Q ss_pred CCCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe
Q psy8615 35 GKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS 113 (128)
Q Consensus 35 ~~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~ 113 (128)
.++.+..+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|++.||+. ++|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 7 GPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE-DAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHH-HHHHHHHHTTTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHH-HHHHHHHHcCCCeeCCc
Confidence 33445666889999999999999999999999999999999999999999999999997777 999999999999 9999
Q ss_pred EEEEEecccc
Q psy8615 114 FLKPSFNTYV 123 (128)
Q Consensus 114 ~l~V~~~~~~ 123 (128)
.|+|.|.++.
T Consensus 86 ~l~v~~a~~~ 95 (103)
T 2cq0_A 86 ILNVEWAKPS 95 (103)
T ss_dssp ECEEEESSCC
T ss_pred EEEEEECCCC
Confidence 9999999875
No 5
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=128.26 Aligned_cols=83 Identities=23% Similarity=0.362 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
...+..++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|++|++.||+. ++|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKD-SAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHH-HHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHH-HHHHHHHHcCCCeeCCcEEE
Confidence 33456789999999999999999999999999999999999999999999999997777 999999999999 9999999
Q ss_pred EEecc
Q psy8615 117 PSFNT 121 (128)
Q Consensus 117 V~~~~ 121 (128)
|+|+|
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99985
No 6
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.90 E-value=2.3e-23 Score=133.42 Aligned_cols=86 Identities=51% Similarity=0.824 Sum_probs=79.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
+...++.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|++|++.||+. ++|+.|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV-SAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHH-HHHHHHHHHTTCEETTEEC
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHH-HHHHHHHHcCCCEECCEEE
Confidence 444556789999999999999999999999999999999999989999999999997777 999999999999 999999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|.|+++.
T Consensus 98 ~V~~a~~~ 105 (115)
T 2cpz_A 98 KVQLKRSK 105 (115)
T ss_dssp EEECCCCS
T ss_pred EEEEcCCC
Confidence 99999864
No 7
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.90 E-value=4.4e-23 Score=127.64 Aligned_cols=84 Identities=19% Similarity=0.225 Sum_probs=77.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
......++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~ 88 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD-DAKEAKERANGMELDGRRIR 88 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHH-HHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHH-HHHHHHHHhCCCEECCEEEE
Confidence 33455789999999999999999999999999999999999999999999999997777 999999999999 9999999
Q ss_pred EEeccc
Q psy8615 117 PSFNTY 122 (128)
Q Consensus 117 V~~~~~ 122 (128)
|.|++.
T Consensus 89 v~~a~~ 94 (95)
T 2cqc_A 89 VSGPSS 94 (95)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 999874
No 8
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=1.2e-22 Score=127.08 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=77.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
...+.++|||+|||+++++++|+++|++||.|.++++..++ +|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENES-QASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHH-HHHHHHHHHTTEESSSCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHH-HHHHHHHHhCCCEECCEEEEE
Confidence 34557899999999999999999999999999999999998 7999999999997777 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999875
No 9
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.90 E-value=5.3e-23 Score=128.54 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=76.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEE--------EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS--------AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY- 109 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~--------~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~- 109 (128)
..+..++|||+|||+++++++|+++|++||.|.+ ++++.++.+|+++|||||+|.+.+ +|.+|++.|||.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~-~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP-SAKAAIDWFDGKE 87 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHH-HHHHHHHHHTTCB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHH-HHHHHHHHhCCCE
Confidence 3455789999999999999999999999999999 999999999999999999997777 999999999999
Q ss_pred CCCeEEEEEecc
Q psy8615 110 LGQSFLKPSFNT 121 (128)
Q Consensus 110 ~~~~~l~V~~~~ 121 (128)
++|+.|+|.|++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999975
No 10
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.90 E-value=1.5e-23 Score=130.76 Aligned_cols=80 Identities=10% Similarity=0.230 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCc--eEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-----CCCeEE
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGT--VLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-----LGQSFL 115 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~--i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-----~~~~~l 115 (128)
-.+|||+|||+++++++|+++|++||. +.+|++++|+.||+++|||||+|.+.+ +|.+|++.||+. ++||+|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~-~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAM-DASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSH-HHHHHHHHHHSSSSCEEETTEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHH-HHHHHHHHhcCCCCCceECCEEE
Confidence 458999999999999999999999995 678999999999999999999998888 999999999983 889999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|+|++.+
T Consensus 88 ~V~~Akss 95 (95)
T 2lkz_A 88 GVDFAKSA 95 (95)
T ss_dssp EEEECCCC
T ss_pred EEEEccCC
Confidence 99999863
No 11
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.90 E-value=5.2e-23 Score=124.41 Aligned_cols=79 Identities=24% Similarity=0.314 Sum_probs=75.3
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~ 122 (128)
++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|+.|++.|||. ++|+.|+|.|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD-DAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH-HHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHH-HHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 58999999999999999999999999999999999999999999999997777 999999999999 9999999999986
Q ss_pred c
Q psy8615 123 V 123 (128)
Q Consensus 123 ~ 123 (128)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 12
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.90 E-value=6.6e-23 Score=131.21 Aligned_cols=87 Identities=23% Similarity=0.433 Sum_probs=80.2
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
...+..+.++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.+ +|++|++.||+. ++|+.
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW-DAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHTTTCEETTEE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHHhCCCEECCEE
Confidence 3445566889999999999999999999999999999999999989999999999997777 999999999999 99999
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|.|+++.
T Consensus 87 l~V~~a~~~ 95 (115)
T 2dgo_A 87 IRTNWATRK 95 (115)
T ss_dssp CEEEESSCC
T ss_pred EEEEEccCC
Confidence 999999864
No 13
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.89 E-value=3.5e-23 Score=126.22 Aligned_cols=82 Identities=26% Similarity=0.450 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
.+.++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|+.|++.||+. ++|+.|+|.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKW-DAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHH-HHHHHHHHcCCCEECCeEEEEEe
Confidence 34679999999999999999999999999999999999989999999999997777 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+++.
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9864
No 14
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4.6e-23 Score=129.92 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=79.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
.+....++|||+|||+++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE-DADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHH-HHHHHHHHSSSCBCSSCBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHH-HHHHHHHHhCCCeECCeEEE
Confidence 34456789999999999999999999999999999999999989999999999997777 999999999999 9999999
Q ss_pred EEeccccc
Q psy8615 117 PSFNTYVL 124 (128)
Q Consensus 117 V~~~~~~~ 124 (128)
|.|+++.-
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 99998753
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.89 E-value=3.3e-23 Score=125.81 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
..+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|++.|||. ++|+.|+|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE-DAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHH-HHHHHHHHhCCCEECCcEEEEE
Confidence 345789999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred ecc
Q psy8615 119 FNT 121 (128)
Q Consensus 119 ~~~ 121 (128)
|++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 16
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.89 E-value=8.2e-24 Score=130.27 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=71.1
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCC--ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFG--TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G--~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
.+|||+|||+++++++|+++|++|| .|.+++++.|+.+|+++|||||+|.+.+ +|++|++.|||. ++|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~-~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEA-SSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHH-HHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHH-HHHHHHHHcCCCeeCCEEEEEEEC
Confidence 4799999999999999999999999 9999999999999999999999997777 999999999999 99999999999
Q ss_pred ccccc
Q psy8615 121 TYVLM 125 (128)
Q Consensus 121 ~~~~~ 125 (128)
++...
T Consensus 81 ~~~~~ 85 (90)
T 3p5t_L 81 NKLEH 85 (90)
T ss_dssp -----
T ss_pred CCCcc
Confidence 87653
No 17
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.89 E-value=9.7e-23 Score=129.64 Aligned_cols=86 Identities=23% Similarity=0.339 Sum_probs=79.6
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
+...+..++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|++.|||. ++|+.|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~-~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSE-CAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHH-HHHHHHHHHTTCCSSSSCC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHH-HHHHHHHHcCCCEECCEEE
Confidence 344556789999999999999999999999999999999999999999999999997777 999999999999 999999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|+|+++.
T Consensus 99 ~V~~a~~k 106 (108)
T 2jrs_A 99 KVGHVTER 106 (108)
T ss_dssp EEECSCSS
T ss_pred EEEEcccC
Confidence 99999864
No 18
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=8.8e-23 Score=128.30 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=78.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
+....++|||+|||+++++++|+++|++||.|.++++..++.||+++|||||+|.+.+ +|++|++.||+. ++|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRR-DAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSS-HHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHH-HHHHHHHHcCCCEECCcEEEE
Confidence 4455789999999999999999999999999999999999999999999999998888 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 88 ~~a~~~ 93 (103)
T 2dnm_A 88 QVARYG 93 (103)
T ss_dssp EECSSC
T ss_pred EECCcC
Confidence 999864
No 19
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=9.3e-23 Score=126.27 Aligned_cols=83 Identities=22% Similarity=0.336 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
+..++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+|.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSE-CARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHH-HHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHH-HHHHHHHHhCCCeeCCcEEEEEE
Confidence 45789999999999999999999999999999999999999999999999997777 999999999999 9999999999
Q ss_pred ccccc
Q psy8615 120 NTYVL 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
.++..
T Consensus 82 a~~~~ 86 (95)
T 2dnz_A 82 VTERL 86 (95)
T ss_dssp SSCCC
T ss_pred ccccc
Confidence 98753
No 20
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.89 E-value=1.1e-23 Score=132.29 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCC------CCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC-e
Q psy8615 42 EGANLFIYHLPP------EFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ-S 113 (128)
Q Consensus 42 ~~~~l~V~nLp~------~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~-~ 113 (128)
..++|||+|||. ++++++|+++|++||.|.+++++.|+.||+++|||||+|.+.+ +|.+|++.|||. ++| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~-~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMN-DAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHH-HHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHH-HHHHHHHHhCCcccCCCe
Confidence 367999999999 9999999999999999999999999999999999999997777 999999999999 998 9
Q ss_pred EEEEEeccc
Q psy8615 114 FLKPSFNTY 122 (128)
Q Consensus 114 ~l~V~~~~~ 122 (128)
.|+|.+.++
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999875
No 21
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.89 E-value=6e-23 Score=138.57 Aligned_cols=82 Identities=13% Similarity=0.127 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCC--ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFG--TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G--~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
+.++|||+|||+++++++|+++|++|| .|.+++++.|+.||+++|||||+|.+.+ +|.+|++.|||. ++|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~-~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASEN-SVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHH-HHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHH-HHHHHHHHcCCCEECCeEeEEE
Confidence 468999999999999999999999999 9999999999999999999999997777 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
++++..
T Consensus 133 ~a~~~~ 138 (156)
T 3n9u_C 133 PATRQN 138 (156)
T ss_dssp ECCHHH
T ss_pred EcCCCc
Confidence 998653
No 22
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.89 E-value=3.4e-22 Score=125.93 Aligned_cols=83 Identities=20% Similarity=0.235 Sum_probs=76.2
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC---eE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ---SF 114 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~---~~ 114 (128)
.....++|||+|||+++++++|+++|++||.|.++++..++ +|+++|||||+|.+.+ +|.+|++.||+. +.+ +.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~-~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHT-EAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHH-HHHHHHHHHSSCCCCTTCSSC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHH-HHHHHHHHHcCCccCCCCCcc
Confidence 34558899999999999999999999999999999999998 6999999999997777 999999999998 776 99
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|.|+++.
T Consensus 89 l~V~~a~~~ 97 (105)
T 2dnh_A 89 LVVKFADTD 97 (105)
T ss_dssp CEEEESCSS
T ss_pred EEEEECccC
Confidence 999999764
No 23
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=1e-22 Score=128.56 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
..+.++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|..|++.|||. ++|+.|+|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK-EAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHH-HHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHH-HHHHHHHHhcCCEECCcEEEEE
Confidence 445789999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 99 ~a~~~ 103 (106)
T 1p27_B 99 WCFVR 103 (106)
T ss_dssp ESEES
T ss_pred eecCC
Confidence 98764
No 24
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=2.1e-22 Score=127.93 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc------Cc-CC
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN------DY-LG 111 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~------g~-~~ 111 (128)
.....++|||+|||+++++++|+++|++||.|.+|+++.++.+|.++|||||+|.+.+ +|.+|++.|| +. ++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE-AAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHH-HHHHHHHHHCTTTTTCCEESS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHH-HHHHHHHHhccccccCCcEEc
Confidence 3455789999999999999999999999999999999999999999999999997777 9999999999 98 99
Q ss_pred CeEEEEEecccc
Q psy8615 112 QSFLKPSFNTYV 123 (128)
Q Consensus 112 ~~~l~V~~~~~~ 123 (128)
|+.|+|.|+++.
T Consensus 90 g~~l~v~~a~~~ 101 (111)
T 1x4h_A 90 GRQLKVDLAVTR 101 (111)
T ss_dssp SCEEEEECCCCC
T ss_pred CEEEEEEECCCC
Confidence 999999998764
No 25
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=8.1e-23 Score=128.17 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE-DAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHH-HHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHHHhCCCEECCcEEEEE
Confidence 345789999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
|+++.-
T Consensus 88 ~a~~~~ 93 (102)
T 2cqb_A 88 LAKPMR 93 (102)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998753
No 26
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.3e-22 Score=125.63 Aligned_cols=84 Identities=29% Similarity=0.383 Sum_probs=77.1
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
.....+.++|||+|||+++++++|+++|++||.|.++++..+ +|.++|||||+|.+.+ +|..|++.||+. ++|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPE-EATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHH-HHHHHHHHHTTCBSSSSBC
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHH-HHHHHHHHhCCCEeCCcEE
Confidence 344556889999999999999999999999999999999998 6999999999997777 999999999999 999999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|.|+++.
T Consensus 86 ~V~~a~~~ 93 (103)
T 2d9p_A 86 YVALAQRK 93 (103)
T ss_dssp EEEECSSC
T ss_pred EEEEeccc
Confidence 99998764
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-22 Score=127.75 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=78.4
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEec-CCCCCcceEEEEEEecCHHHHHHHHHHh-cCc-CCCeE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFID-KQNNRSKCFGTIIFMRKFFILTIRFDTA-NDY-LGQSF 114 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~-~~tg~~~g~~fv~f~~~~~~a~~Ai~~l-~g~-~~~~~ 114 (128)
......++|||+|||+++++++|+++|++||.|.+++++.+ +.+|+++|||||+|.+.+ +|.+|++.| |+. ++|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ-DAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHH-HHHHHHHHHHTCCBSSSCB
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHH-HHHHHHHHhccCCeECCCE
Confidence 34556789999999999999999999999999999999999 788999999999997777 999999999 899 99999
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|.|+++.
T Consensus 89 l~v~~a~~~ 97 (107)
T 2cph_A 89 LVLEWADSE 97 (107)
T ss_dssp CEEEECCCC
T ss_pred EEEEeCCCC
Confidence 999999875
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=126.04 Aligned_cols=82 Identities=17% Similarity=0.286 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++ +|+. ++|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQ-SVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHH-HHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHH-HHHHHHH-hCCCEECCeEEEEE
Confidence 345789999999999999999999999999999999999999999999999997777 9999999 9999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|.++.
T Consensus 85 ~a~~~ 89 (99)
T 2dgs_A 85 RAEPR 89 (99)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 99865
No 29
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.3e-22 Score=126.52 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
.+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPE-HAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHH-HHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHH-HHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999999988999999999997777 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+++.
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9875
No 30
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.88 E-value=1.1e-22 Score=126.49 Aligned_cols=81 Identities=22% Similarity=0.360 Sum_probs=76.7
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|..|++.|||. ++|+.|+|.|++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLE-SSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHH-HHHHHHHHhCCCeECCeEEEEEEcC
Confidence 579999999999999999999999999999999999999999999999997777 999999999999 999999999998
Q ss_pred ccc
Q psy8615 122 YVL 124 (128)
Q Consensus 122 ~~~ 124 (128)
+.-
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 754
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.88 E-value=9.9e-24 Score=130.45 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=73.4
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc-Cc-CCCeEEEEEec
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN-DY-LGQSFLKPSFN 120 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~-g~-~~~~~l~V~~~ 120 (128)
.+|||+|||++++|++|+++|++|| .|.++++++|+.||+++|||||+|.+.+ +|.+|++.++ +. ++|+.|+|.|+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~-~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQ-DATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHH-HHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHH-HHHHHHHhcCCCeEECCEEEEEEEc
Confidence 5799999999999999999999999 8999999999999999999999997777 9999999885 55 99999999999
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
++.
T Consensus 81 ~~~ 83 (91)
T 2lxi_A 81 DPK 83 (91)
T ss_dssp CSC
T ss_pred CCC
Confidence 875
No 32
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=4e-22 Score=125.36 Aligned_cols=82 Identities=18% Similarity=0.220 Sum_probs=75.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.....++|||+|||+++++++|+++|++|| |.+++++.++.||+++|||||+|.+.+ +|.+|+ .||+. ++|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVD-SLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHH-HHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHH-HHHHHH-hhCCCeECCeEEEE
Confidence 344578999999999999999999999997 999999999999999999999997777 999999 89999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 88 ~~a~~~ 93 (103)
T 2dng_A 88 DIAEGR 93 (103)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999864
No 33
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.88 E-value=2e-22 Score=124.81 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.....++|||+|||+++++++|+++|++||.|.++++..++. |+++|||||+|.+.+ +|.+|++.||+. ++|+.|+|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~V 89 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPE-SVSYAIALLNGIRLYGRPINV 89 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTH-HHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHH-HHHHHHHHhCCCEECCCEEEE
Confidence 344578999999999999999999999999999999999987 999999999998888 999999999999 99999999
Q ss_pred Eeccc
Q psy8615 118 SFNTY 122 (128)
Q Consensus 118 ~~~~~ 122 (128)
.|++.
T Consensus 90 ~~a~~ 94 (95)
T 2ywk_A 90 SGPSS 94 (95)
T ss_dssp ECCCC
T ss_pred EEcCC
Confidence 99863
No 34
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.8e-22 Score=128.82 Aligned_cols=85 Identities=18% Similarity=0.217 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceE--------EEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL--------SAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~--------~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
.+....++|||+|||+++++++|+++|++||.|. .+++..++.+|+++|||||+|.+.+ +|.+|++.||+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPP-TAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHH-HHHHHHHHHTTC
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHH-HHHHHHHHcCCC
Confidence 4456688999999999999999999999999999 6999999999999999999997777 999999999999
Q ss_pred -CCCeEEEEEecccc
Q psy8615 110 -LGQSFLKPSFNTYV 123 (128)
Q Consensus 110 -~~~~~l~V~~~~~~ 123 (128)
++|+.|+|.|+++.
T Consensus 89 ~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 89 DFQGSKLKVSLARKK 103 (113)
T ss_dssp EETTEECEEECSSCC
T ss_pred ccCCCEEEEEECCCC
Confidence 99999999999864
No 35
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.88 E-value=1.5e-22 Score=132.64 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
......++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|++|++.|||. ++|+.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~-~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD-DAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHH-HHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH-HHHHHHHHhCCCEECCEEEE
Confidence 34455789999999999999999999999999999999999999999999999997777 999999999999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|.|+++.
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9998763
No 36
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.88 E-value=6.5e-22 Score=130.43 Aligned_cols=85 Identities=18% Similarity=0.282 Sum_probs=78.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
.+....++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGS-SAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHH-HHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHHhCCCEECCeEEE
Confidence 34455789999999999999999999999999999999999999999999999997777 999999999999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|.|+++.
T Consensus 116 v~~a~~~ 122 (139)
T 1u6f_A 116 VALAASG 122 (139)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999864
No 37
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=9.8e-23 Score=127.15 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceE-EEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE----
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVL-SAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF---- 114 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~-~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~---- 114 (128)
...++|||+|||+++++++|+++|++||.|. +++++.++.+|+++|||||+|.+.+ +|++|++.|||. ++|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLA-TAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHH-HHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHH-HHHHHHHHHcCCccCCCCccee
Confidence 4478999999999999999999999999999 9999999999999999999997777 999999999999 99988
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|+|+++.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999999875
No 38
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.5e-22 Score=126.06 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=77.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
.+..++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.+ +|++|++.||+. ++|+.|+|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~-~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD-EATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHH-HHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHH-HHHHHHHHhCCCeeCCeEEEEE
Confidence 344689999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
|++...
T Consensus 91 ~a~~~~ 96 (98)
T 2cqp_A 91 LGSGPS 96 (98)
T ss_dssp ESSCSS
T ss_pred EcCCCC
Confidence 998653
No 39
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.88 E-value=7.4e-22 Score=120.43 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
....+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++. ++. ++|+.|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~~-~~~~~~g~~i~ 83 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAA-SVEKVLDQ-KEHRLDGRVID 83 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTH-HHHHHHHS-SCEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHH-HHHHHHHh-CCCEECCEEEE
Confidence 34456789999999999999999999999999999999999999999999999998888 99999965 677 9999999
Q ss_pred EEec
Q psy8615 117 PSFN 120 (128)
Q Consensus 117 V~~~ 120 (128)
|.++
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9874
No 40
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.9e-22 Score=129.47 Aligned_cols=77 Identities=26% Similarity=0.347 Sum_probs=71.7
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||+++++++|+++|++||.|.+|+++.|+ +.++|||||+|.+.+ +|++|++.||+. ++|+.|+|.+.+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~-~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE-AAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHH-HHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHH-HHHHHHHHcCCCEECCEEEEEEECC
Confidence 4689999999999999999999999999999999996 458999999997777 999999999999 999999999976
Q ss_pred c
Q psy8615 122 Y 122 (128)
Q Consensus 122 ~ 122 (128)
+
T Consensus 82 ~ 82 (115)
T 4f25_A 82 S 82 (115)
T ss_dssp C
T ss_pred C
Confidence 5
No 41
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.88 E-value=4.8e-22 Score=130.80 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=76.9
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
........++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|++|++.||+. ++|+.
T Consensus 56 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 56 SGGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAE-DAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SCSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHH-HHHHHHHHSTEEEETTEE
T ss_pred CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHH-HHHHHHHHhCCCEECCEE
Confidence 3444556889999999999999999999999999999999999999999999999997777 999999999999 99999
Q ss_pred EEEEec
Q psy8615 115 LKPSFN 120 (128)
Q Consensus 115 l~V~~~ 120 (128)
|+|.|+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999984
No 42
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.4e-21 Score=124.87 Aligned_cols=84 Identities=21% Similarity=0.305 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C------
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L------ 110 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~------ 110 (128)
....+.++|||+|||+++++++|+++|++||.|.+++++.++ +|.++|||||+|.+.+ +|..|++.|||. +
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~~~~~~ 97 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTE-KCEAVIGHFNGKFIKTPPGV 97 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHH-HHHHHHHHHBTCCCCCCTTS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHH-HHHHHHHHhCCCEEcCCccc
Confidence 344567899999999999999999999999999999999998 7999999999997777 999999999998 7
Q ss_pred --CCeEEEEEecccc
Q psy8615 111 --GQSFLKPSFNTYV 123 (128)
Q Consensus 111 --~~~~l~V~~~~~~ 123 (128)
.+++|+|.|.++.
T Consensus 98 ~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 98 SAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCCSSCBEEEECCCS
T ss_pred cCCCCceeEEccCCC
Confidence 5788999999864
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.88 E-value=1.6e-22 Score=128.45 Aligned_cols=84 Identities=13% Similarity=0.193 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
...+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|++.|||. ++|+.|+|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK-QALAAKEALNGAEIMGQTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHH-HHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHHHHcCCCEECCcEEEE
Confidence 3455789999999999999999999999999999999999999999999999997777 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 101 ~~a~~~ 106 (110)
T 1oo0_B 101 DWCFVK 106 (110)
T ss_dssp EESEES
T ss_pred EEcccC
Confidence 998764
No 44
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=3.7e-22 Score=127.99 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=78.7
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEE
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLK 116 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~ 116 (128)
...+...++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.+ +|++|++.+++.+.|+.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~~~~~~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRA-AAERACKDPNPIIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHH-HHHHHHTCSSCEETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHH-HHHHHHHhCCCcCCCEEEE
Confidence 344556789999999999999999999999999999999999999999999999997777 9999999999889999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|.|+++.
T Consensus 90 V~~a~~~ 96 (116)
T 2cqd_A 90 VNLAYLG 96 (116)
T ss_dssp EEESTTT
T ss_pred EEEcccC
Confidence 9998653
No 45
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.2e-22 Score=128.05 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
.......++|||+|||.++++++|+++|++||.|.++++..++ +.++|||||+|.+.+ +|++|++.|||. ++|+.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSA-DADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSH-HHHHHHHHHTTCEETTEEC
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHH-HHHHHHHHcCCCEECCEEE
Confidence 3445568899999999999999999999999999999999886 458999999998888 999999999999 999999
Q ss_pred EEEecccccc
Q psy8615 116 KPSFNTYVLM 125 (128)
Q Consensus 116 ~V~~~~~~~~ 125 (128)
+|.|+++..|
T Consensus 100 ~V~~a~~~~l 109 (109)
T 2err_A 100 EVNNATARVM 109 (109)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCcC
Confidence 9999998765
No 46
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3.7e-22 Score=125.81 Aligned_cols=85 Identities=22% Similarity=0.245 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
....+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++. ++. ++|+.|+
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~a~~~-~~~~~~g~~l~ 88 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN-CVGTVLAS-RPHTLDGRNID 88 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTT-HHHHHHHH-CSEEETTEEEB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHH-HHHHHHHh-CCCeECCEEEE
Confidence 34556789999999999999999999999999999999999999999999999998887 99999999 999 9999999
Q ss_pred EEeccccc
Q psy8615 117 PSFNTYVL 124 (128)
Q Consensus 117 V~~~~~~~ 124 (128)
|.|.++.-
T Consensus 89 V~~a~~~~ 96 (105)
T 2dh8_A 89 PKPCTPRG 96 (105)
T ss_dssp CCCSCCSS
T ss_pred EEEccCCC
Confidence 99998754
No 47
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.9e-22 Score=129.02 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|+ .||+. ++|+.|+|.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~-~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ-SVPLAI-GLTGQRLLGVPIIVQA 100 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGG-GHHHHH-HHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHH-HHHHHH-HcCCCEeCCeEEEEEe
Confidence 44679999999999999999999999999999999999999999999999998877 999999 99999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+++.
T Consensus 101 a~~~ 104 (114)
T 2cq4_A 101 SQAE 104 (114)
T ss_dssp HHHH
T ss_pred cCCC
Confidence 8753
No 48
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-22 Score=126.20 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEE-EEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSA-KVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~-~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
...++|||+|||+++++++|+++|++||.|.++ +++.++.+|.++|||||+|.+.+ +|+.|++.||+. ++|+.|+|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFD-ASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHH-HHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHH-HHHHHHHHcCCCEECCEEEEEE
Confidence 347899999999999999999999999999999 99999889999999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 82 ~a~~~ 86 (96)
T 1x5t_A 82 YAFKK 86 (96)
T ss_dssp ESCCC
T ss_pred Eeccc
Confidence 98764
No 49
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.88 E-value=1.3e-22 Score=128.01 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=78.2
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C---CCe
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L---GQS 113 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~---~~~ 113 (128)
......++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|++.||+. + +++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~~~~g~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERE-SALKAQSALHEQKTLPGMNR 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHH-HHHHHHHHHTTTCCCTTCSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHH-HHHHHHHHhcCCcccCCCCc
Confidence 34556789999999999999999999999999999999999999999999999997777 999999999998 6 889
Q ss_pred EEEEEecccc
Q psy8615 114 FLKPSFNTYV 123 (128)
Q Consensus 114 ~l~V~~~~~~ 123 (128)
.|+|.|.++.
T Consensus 87 ~l~v~~a~~~ 96 (106)
T 2dgp_A 87 PIQVKPADSE 96 (106)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEECCcc
Confidence 9999998764
No 50
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.6e-22 Score=126.79 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
..+.++|||+|||+++++++|+++|++||.|.+++++.++.+++++|||||+|.+.+ +|..|++.||+. ++|+.|+|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID-DAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHH-HHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHH-HHHHHHHHhCCCEECCeEEEEE
Confidence 345789999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
|+++..
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998754
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=2.2e-22 Score=125.30 Aligned_cols=83 Identities=16% Similarity=0.170 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCC---CCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQ---NNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~---tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
.+.++|||+|||+++++++|+++|++||.|.++++..++. |++++|||||+|.+.+ +|..|++.||+. ++|+.|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPE-QAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHH-HHHHHHHHSTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHH-HHHHHHHHhCCCeeCCeEEE
Confidence 4578999999999999999999999999999999999886 6799999999997777 999999999999 9999999
Q ss_pred EEeccccc
Q psy8615 117 PSFNTYVL 124 (128)
Q Consensus 117 V~~~~~~~ 124 (128)
|.|+++..
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99998753
No 52
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=123.20 Aligned_cols=82 Identities=9% Similarity=0.127 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCC-cceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNR-SKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~-~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
...++|||+|||.++++++|+++|++||.|.+++++.++.++. ++|||||+|.+.+ +|.+|++.|||. ++|+.|+|+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~ 80 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPD-EAEKALKHMDGGQIDGQEITAT 80 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHH-HHHHHHHHcCCCeECCeEEEEE
Confidence 3578999999999999999999999999999999999988776 8999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
+.++.
T Consensus 81 ~a~~~ 85 (88)
T 4a8x_A 81 AVLAP 85 (88)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 98765
No 53
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=8.3e-23 Score=124.18 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|++.|||. ++|+.|++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPS-AAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHH-HHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHH-HHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999999999999999999997777 999999999999 9999999988
Q ss_pred cc
Q psy8615 120 NT 121 (128)
Q Consensus 120 ~~ 121 (128)
.+
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 54
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=5.9e-22 Score=125.19 Aligned_cols=80 Identities=28% Similarity=0.318 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+|+
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKA-DALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHH-HHHHHHHHhCCCEeCCcEEEEE
Confidence 3557899999999999999999999999999999999999 7999999999997777 999999999999 999999999
Q ss_pred ecc
Q psy8615 119 FNT 121 (128)
Q Consensus 119 ~~~ 121 (128)
|++
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 55
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=124.36 Aligned_cols=83 Identities=20% Similarity=0.289 Sum_probs=76.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
......++|||+|||+++++++|+++|++||.|.+++++.++. |+++|||||+|.+.+ +|+.|++.||+. ++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSI-EAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHH-HHHHHHHHhCCCEeCCCEEE
Confidence 3445578999999999999999999999999999999999984 999999999997777 999999999999 9999999
Q ss_pred EEeccc
Q psy8615 117 PSFNTY 122 (128)
Q Consensus 117 V~~~~~ 122 (128)
|.|++.
T Consensus 88 v~~a~~ 93 (114)
T 2do0_A 88 VKMDER 93 (114)
T ss_dssp EEECSC
T ss_pred EEEccc
Confidence 999874
No 56
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=5.7e-22 Score=121.23 Aligned_cols=80 Identities=15% Similarity=0.173 Sum_probs=75.8
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||+++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|.+|+ .+|+. ++|+.|+|.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE-SVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTH-HHHHHG-GGTTCEETTEECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHH-HHHHHH-hcCCCEECCcEEEEEEcc
Confidence 579999999999999999999999999999999999989999999999998887 999999 99999 999999999998
Q ss_pred ccc
Q psy8615 122 YVL 124 (128)
Q Consensus 122 ~~~ 124 (128)
+..
T Consensus 84 ~~~ 86 (89)
T 3ucg_A 84 TNR 86 (89)
T ss_dssp TTS
T ss_pred CCC
Confidence 753
No 57
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.87 E-value=3.7e-22 Score=128.41 Aligned_cols=83 Identities=20% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
..+.++|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.+ +|+.|++.|||. ++|+.|+|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~-~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA-DAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHH-HHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHH-HHHHHHHHhCCCEECCEEEEEE
Confidence 4557899999999999999999999999999999999998 7999999999997777 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
|+++..
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998754
No 58
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.6e-22 Score=124.54 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCC-CCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQN-NRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~t-g~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
....++|||+|||+++++++|+++|++|| |.+++++.++.+ |+++|||||+|.+.+ +|++|+ .||+. ++|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~-~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLD-SLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHH-HHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHH-HHHHHH-hcCCCEeCCcEEEE
Confidence 34568999999999999999999999999 999999999988 999999999997777 999999 99999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 89 ~~a~~~ 94 (104)
T 1wi8_A 89 DVADQA 94 (104)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998864
No 59
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.7e-21 Score=122.36 Aligned_cols=85 Identities=20% Similarity=0.255 Sum_probs=76.6
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
......+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++ ++. ++|+.
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYE-TQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHH-HHHHHHH--SCEEETTEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHH-HHHHHHH--cCCeeCCeE
Confidence 3444566789999999999999999999999999999999999999999999999997777 9999998 467 99999
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|.|.++.
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 999999764
No 60
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.87 E-value=8.6e-22 Score=125.63 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=76.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHH---hhhcCCCceEEEEEEecCCCC---CcceEEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLA---SMFGPFGTVLSAKVFIDKQNN---RSKCFGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~---~~f~~~G~i~~~~~~~~~~tg---~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
......++|||+|||+++++++|+ ++|++||.|.++++..++.++ +++|||||+|++.+ +|++|++.||+. +
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~-~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSE-DALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHH-HHHHHHHHHTTEEE
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHH-HHHHHHHHhCCCEE
Confidence 344557899999999999999999 999999999999999988754 55699999997777 999999999999 9
Q ss_pred CCeEEEEEeccccc
Q psy8615 111 GQSFLKPSFNTYVL 124 (128)
Q Consensus 111 ~~~~l~V~~~~~~~ 124 (128)
+|+.|+|.|+++..
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998764
No 61
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.87 E-value=1.1e-22 Score=131.76 Aligned_cols=81 Identities=12% Similarity=0.200 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|+ .|||. ++|+.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~-~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERN-SVDAAV-AMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHH-HHHHHH-TTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHH-HHHHHH-hcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999997777 999999 89999 99999999999
Q ss_pred cccc
Q psy8615 121 TYVL 124 (128)
Q Consensus 121 ~~~~ 124 (128)
+...
T Consensus 113 ~~~~ 116 (124)
T 2jwn_A 113 RTNM 116 (124)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8643
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.1e-21 Score=121.98 Aligned_cols=85 Identities=22% Similarity=0.353 Sum_probs=77.0
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
......++|||+|||+++++++|+++|++||.|.+++++.++. .++|||||+|.+.+ +|.+|++.||+. ++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSA-DADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHH-HHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHH-HHHHHHHHhCCCEECCEEEE
Confidence 3445578999999999999999999999999999999999875 38999999997777 999999999999 9999999
Q ss_pred EEecccccc
Q psy8615 117 PSFNTYVLM 125 (128)
Q Consensus 117 V~~~~~~~~ 125 (128)
|.|+++..+
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999988654
No 63
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.87 E-value=2.2e-22 Score=124.60 Aligned_cols=81 Identities=14% Similarity=0.106 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
+..++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|++|++.||+. ++|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~-~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD-EATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHH-HHHHHHHHhCCCeECCcEEEEEe
Confidence 34589999999999999999999999999999999999999999999999997777 999999999999 9999999999
Q ss_pred ccc
Q psy8615 120 NTY 122 (128)
Q Consensus 120 ~~~ 122 (128)
.+.
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 64
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.87 E-value=3.7e-21 Score=124.68 Aligned_cols=85 Identities=24% Similarity=0.249 Sum_probs=78.3
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.....++|||+|||.++++++|+++|++||.|.++++..++ +|+++|||||+|.+.+ +|..|++.|||. ++|+.|+|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRA-DALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHH-HHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHH-HHHHHHHHcCCCEECCcEEEE
Confidence 34557899999999999999999999999999999999998 7999999999997777 999999999999 99999999
Q ss_pred Eecccccc
Q psy8615 118 SFNTYVLM 125 (128)
Q Consensus 118 ~~~~~~~~ 125 (128)
.|+++...
T Consensus 109 ~~a~~~~~ 116 (124)
T 2kt5_A 109 QLVASQID 116 (124)
T ss_dssp EEECCTTC
T ss_pred EEeCCCCC
Confidence 99987654
No 65
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-21 Score=122.73 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=75.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
.+....++|||+|||+++++++|+++|++||.|.+|+++.++. .++|||||+|.+.+ +|.+|++.||+. ++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHR-DAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHH-HHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHH-HHHHHHHHhCCCCcCCCeEE
Confidence 3445678999999999999999999999999999999999865 36999999997777 999999999999 9999999
Q ss_pred EEeccccc
Q psy8615 117 PSFNTYVL 124 (128)
Q Consensus 117 V~~~~~~~ 124 (128)
|.|+++..
T Consensus 87 V~~a~~~~ 94 (103)
T 2cqi_A 87 VNWATTPS 94 (103)
T ss_dssp EEECCCTT
T ss_pred EEECCCCc
Confidence 99998753
No 66
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.7e-22 Score=126.74 Aligned_cols=81 Identities=12% Similarity=0.065 Sum_probs=74.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.+...++|||+|||+++++++|+++|++||.|.+++++.|+. |+++|||||+|.+.+ +|..|+. +++. ++|+.|+|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e-~a~~Ai~-~~~~~~~gr~l~V 83 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIE-SAKKFVE-TPGQKYKETDLLI 83 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHH-HHHHHHT-SSCCCCTTTTCEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHH-HHHHHHH-cCCCEECCEEEEE
Confidence 344568999999999999999999999999999999999988 999999999997766 9999999 8998 99999999
Q ss_pred Eeccc
Q psy8615 118 SFNTY 122 (128)
Q Consensus 118 ~~~~~ 122 (128)
.|++.
T Consensus 84 ~~~~~ 88 (103)
T 1s79_A 84 LFKDD 88 (103)
T ss_dssp EEHHH
T ss_pred EEchH
Confidence 99764
No 67
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.6e-22 Score=124.99 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||+++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|..|++.|||. ++|+.|+|.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE-TALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHH-HHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHH-HHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3579999999999999999999999999999999999999999999999997777 999999999999 99999999999
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
++.
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 864
No 68
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=6.2e-22 Score=128.53 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=78.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
...+.++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.+ +|+.|++.||+. ++|+.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYK-EAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHH-HHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH-HHHHHHHHhCCCeeCCeEEEE
Confidence 3455789999999999999999999999999999999999989999999999997777 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 97 ~~a~~~ 102 (126)
T 3ex7_B 97 DWCFVR 102 (126)
T ss_dssp EESEES
T ss_pred EEecCC
Confidence 998764
No 69
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.86 E-value=2e-22 Score=126.36 Aligned_cols=83 Identities=17% Similarity=0.245 Sum_probs=72.8
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecC-CCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK-QNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~-~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
......++|||+|||+++++++|+++|++|| |.+++++.++ .+|+++|||||+|.+.+ +|.+|+ .|||. ++|+.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~-~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLD-SLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHH-HHHHHH-HTTTCCBTTBCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHH-HHHHHH-hcCCCEECCeEE
Confidence 3445578999999999999999999999999 9999999998 68999999999997777 999999 99999 999999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|.|+++.
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99998864
No 70
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=9e-22 Score=125.29 Aligned_cols=84 Identities=25% Similarity=0.360 Sum_probs=73.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
....+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++.++ . ++|+.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~-~A~~Ai~~~~-~~l~g~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLAQSR-HELDSKTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHH-HHHHHHHSSC-EEETTEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHH-HHHHHHHHCC-CcCCCEEEE
Confidence 34455789999999999999999999999999999999999999999999999997776 9999999886 7 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|.+.++.
T Consensus 98 V~~a~~~ 104 (109)
T 2rs2_A 98 PKVAFPR 104 (109)
T ss_dssp EEECCCC
T ss_pred EEEccCC
Confidence 9998764
No 71
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.86 E-value=9.7e-22 Score=126.81 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCc---eEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGT---VLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~---i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
.....++|||+|||+++++++|+++|++||. |.+++++.++. |+++|||||+|.+.+ +|++|++ +|+. ++|+.
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~-~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESED-DVKLALK-KDRESMGHRY 89 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHH-HHHHHGG-GTTEEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHH-HHHHHHh-cCCCeECCeE
Confidence 3455789999999999999999999999999 89999999988 999999999997766 9999999 9999 99999
Q ss_pred EEEEeccccc
Q psy8615 115 LKPSFNTYVL 124 (128)
Q Consensus 115 l~V~~~~~~~ 124 (128)
|+|.+++..-
T Consensus 90 i~V~~a~~~~ 99 (118)
T 2db1_A 90 IEVFKSHRTE 99 (118)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999987653
No 72
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=123.51 Aligned_cols=82 Identities=11% Similarity=0.149 Sum_probs=73.8
Q ss_pred CCCCCCCeEEEcCCCCCC------CHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 38 LTGPEGANLFIYHLPPEF------SDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~------~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
......++|||+|||+.+ ++++|+.+|++||.|.+++++ +.+|+++|||||+|.+.+ +|..|++.|||. +
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~-~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPA-HAVDAVKNADGYKL 86 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSS-HHHHHHHHCSSEEC
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHH-HHHHHHHHhCCccc
Confidence 344457899999999999 789999999999999999887 467999999999998888 999999999999 9
Q ss_pred CCe-EEEEEeccc
Q psy8615 111 GQS-FLKPSFNTY 122 (128)
Q Consensus 111 ~~~-~l~V~~~~~ 122 (128)
+|+ .|+|.|.+.
T Consensus 87 ~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 DKQHTFRVNLFTD 99 (105)
T ss_dssp STTCEEEEECSCC
T ss_pred CCCceEEEEEcch
Confidence 998 999999875
No 73
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=8.5e-22 Score=122.58 Aligned_cols=80 Identities=15% Similarity=0.149 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----hhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLA----SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~----~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
.+.++|||+|||+++++++|+ ++|++||.|.+++++.|+.+ +|||||+|.+.+ +|.+|++.|||. ++|+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~-~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQ-DAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHH-HHHHHHHHHTTEEETTEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHH-HHHHHHHHhCCCEECCeEE
Confidence 347899999999999999999 99999999999999999875 899999997777 999999999999 999999
Q ss_pred EEEeccccc
Q psy8615 116 KPSFNTYVL 124 (128)
Q Consensus 116 ~V~~~~~~~ 124 (128)
+|+|+++..
T Consensus 83 ~V~~a~~~~ 91 (96)
T 2dgx_A 83 LVSLATGAS 91 (96)
T ss_dssp EEEECCCSS
T ss_pred EEEEcCCCC
Confidence 999998764
No 74
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=2e-21 Score=130.54 Aligned_cols=83 Identities=11% Similarity=0.158 Sum_probs=77.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.+|+++.++.++.++|||||+|.+.+ +|+.|++.||+. ++|+.|+|.
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRA-DAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHTTTSEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHH-HHHHHHHHhCCCEECCeEEEEE
Confidence 345789999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99763
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.86 E-value=1.5e-21 Score=120.09 Aligned_cols=81 Identities=21% Similarity=0.290 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.++++..+ +|+++|||||+|.+.+ +|+.|++.||+. ++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~-~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPE-VAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHH-HHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHH-HHHHHHHHhCCCEECCcEEEEEE
Confidence 45789999999999999999999999999999999874 6999999999997777 999999999999 9999999999
Q ss_pred ccccc
Q psy8615 120 NTYVL 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98754
No 76
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=1.2e-21 Score=131.62 Aligned_cols=83 Identities=19% Similarity=0.165 Sum_probs=77.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.+++++.|+.+|+++|||||+|.+.+ +|..|++.|||. ++|+.|+|.
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR-DAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHH-HHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHH-HHHHHHHHhCCCEECCeEEEEE
Confidence 345789999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99864
No 77
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1e-21 Score=123.51 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=76.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcC-CCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc--CCCeEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGP-FGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY--LGQSFL 115 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~-~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~--~~~~~l 115 (128)
+....++|||+|||+++++++|+++|++ ||.|.+++++.++ +|+++|||||+|.+.+ +|..|++.||+. ++|+.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~-~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDEL-EQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHH-HHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHH-HHHHHHHHccCCcccCCEeE
Confidence 4455789999999999999999999999 9999999999999 8999999999997777 999999999995 899999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|.|+++.
T Consensus 83 ~v~~a~~~ 90 (104)
T 2dhg_A 83 RLSVAIPK 90 (104)
T ss_dssp CCCBCCCC
T ss_pred EEEEccCC
Confidence 99998754
No 78
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=118.37 Aligned_cols=80 Identities=8% Similarity=0.167 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++| .|.+++++.+ .+|+++|||||+|.+.+ +|.+|++ +|+. ++|+.|+|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~-~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEE-EVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHH-HHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHH-HHHHHHH-hCCceeCCcEEEEE
Confidence 3457899999999999999999999999 9999999999 67999999999997777 9999999 9999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
++++.
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 98865
No 79
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=4.5e-21 Score=120.82 Aligned_cols=80 Identities=13% Similarity=0.242 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||. .+++++.|+ +|+++|||||+|.+.+ +|++|++ +|+. ++++.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~-~a~~Al~-~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHE-DAVAAMA-KDKANMQHRYVELF 87 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSH-HHHHHHT-TSSCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHH-HHHHHHH-hCCCeECCcEEEEE
Confidence 345689999999999999999999999995 599999998 7999999999998888 9999994 7998 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
+++..
T Consensus 88 ~~~~~ 92 (102)
T 1wez_A 88 LNSTA 92 (102)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 88764
No 80
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=5.9e-22 Score=118.13 Aligned_cols=75 Identities=25% Similarity=0.386 Sum_probs=71.5
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|++|++.++ . ++|+.|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA-GVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTT-HHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHH-HHHHHHHhCC-CccCCEEEEEEec
Confidence 57999999999999999999999999999999999999999999999998888 9999999999 7 99999999885
No 81
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.1e-21 Score=125.68 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++. ++. ++|+.|+|.|
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~Ai~~-~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA-EVDAAMAA-RPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHH-HHHHHHTS-CSEEETTEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHH-HHHHHHHh-CCcEECCEEEEEEE
Confidence 34689999999999999999999999999999999999999999999999997777 99999998 998 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
.++.
T Consensus 103 a~~~ 106 (116)
T 1x4b_A 103 AVAR 106 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8764
No 82
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.2e-21 Score=121.66 Aligned_cols=83 Identities=13% Similarity=0.164 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEE-EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLS-AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~-~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
....++|||+|||+++++++|+++|++||.|.+ ++++.+ .+|+++|||||+|.+.+ +|++|++. |+. ++|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~-~a~~A~~~-~~~~~~gr~i~v 88 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQE-IAEKALKK-HKERIGHRYIEI 88 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHH-HHHHHHTT-TTCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHH-HHHHHHHh-CcchhCCcEEEE
Confidence 345789999999999999999999999999987 888888 67999999999997777 99999998 888 99999999
Q ss_pred Eecccccc
Q psy8615 118 SFNTYVLM 125 (128)
Q Consensus 118 ~~~~~~~~ 125 (128)
.+.+..-|
T Consensus 89 ~~~~~~~~ 96 (104)
T 1wg5_A 89 FKSSRAEV 96 (104)
T ss_dssp EEECTTTS
T ss_pred EECCHHHH
Confidence 99887654
No 83
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.1e-21 Score=126.03 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.++.++.+..+|+++|||||+|.+.+ +|..|++ +|+. ++|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~-~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEA-DYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSH-HHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHH-HHHHHHH-hCCCeECCcEEEEE
Confidence 345689999999999999999999999999998777777788999999999998888 9999999 9999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
+.++.
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98764
No 84
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.2e-21 Score=119.85 Aligned_cols=82 Identities=15% Similarity=0.173 Sum_probs=71.4
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc--Cc-CCCe
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN--DY-LGQS 113 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~--g~-~~~~ 113 (128)
....++.++|||+|||+++++++|+++|++||.|.++.++.+ +|||||+|++.+ +|..|++.|+ +. +.|+
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~-~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEE-AAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHH-HHHHHHHHHHHSCCEETTE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHH-HHHHHHHHhccCCceECCc
Confidence 344456789999999999999999999999999999988754 789999997777 9999999875 56 9999
Q ss_pred EEEEEecccccc
Q psy8615 114 FLKPSFNTYVLM 125 (128)
Q Consensus 114 ~l~V~~~~~~~~ 125 (128)
+|+|+|+++.-+
T Consensus 82 ~l~V~~a~~~~~ 93 (101)
T 2cq1_A 82 PIYIQYSNHKEL 93 (101)
T ss_dssp ECEEEECSCSSC
T ss_pred EEEEEEcCcccC
Confidence 999999987654
No 85
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-21 Score=125.12 Aligned_cols=83 Identities=12% Similarity=0.022 Sum_probs=75.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCce-EEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTV-LSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i-~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
..+.++|||+|||+++++++|+++|++||.| .+++++.|+ +|+++|||||+|.+.+ +|.+|++. |+. ++|+.|+|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~-~a~~Al~~-~~~~~~gr~i~v 88 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNED-DARKSERL-HRKKLNGREAFV 88 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHH-HHHHHGGG-CSEEETTEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHH-HHHHHHHh-CCCccCCeEEEE
Confidence 3457899999999999999999999999999 889999998 7999999999997766 99999988 998 99999999
Q ss_pred Eecccccc
Q psy8615 118 SFNTYVLM 125 (128)
Q Consensus 118 ~~~~~~~~ 125 (128)
.+.++.-+
T Consensus 89 ~~a~~~~~ 96 (114)
T 2cpy_A 89 HVVTLEDM 96 (114)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 99887543
No 86
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.85 E-value=5e-22 Score=118.06 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=69.7
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
+|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|++|++ +|+. ++|+.|+|.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED-IVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHH-HHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHH-HHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999999989999999999997776 9999998 9999 99999999874
No 87
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.85 E-value=1.6e-21 Score=138.89 Aligned_cols=81 Identities=20% Similarity=0.132 Sum_probs=75.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCC--ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFG--TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G--~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
..++|||+|||+++++++|+++|++|| .|.+|+++.|+.||+++|||||+|.+.+ +|.+||+.||+. |.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~-~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEA-SSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTT-HHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHH-HHHHHHHHcCCCeECCEEeEEE
Confidence 567999999999999999999999999 9999999999999999999999998887 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98764
No 88
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.85 E-value=3.9e-22 Score=131.55 Aligned_cols=86 Identities=19% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
......++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|++|++.||+. ++|+.|+
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~-~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKR-DAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHH-HHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHH-HHHHHHHHcCCCEECCEEEE
Confidence 34455789999999999999999999999999999999999989999999999997777 999999999999 9999999
Q ss_pred EEeccccc
Q psy8615 117 PSFNTYVL 124 (128)
Q Consensus 117 V~~~~~~~ 124 (128)
|.|+++..
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998653
No 89
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.1e-21 Score=120.44 Aligned_cols=81 Identities=15% Similarity=0.240 Sum_probs=72.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.....++|||+|||+++++++|+++|++||.|.++++..+ +.++|||||+|.+.+ +|.+|++.||+. +.|+.|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~V 93 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPR-DAEDAVYGRDGYDYDGYRLRV 93 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHH-HHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHH-HHHHHHHHcCCCEECCeEEEE
Confidence 3455789999999999999999999999999999998554 568999999997777 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 94 ~~a~~~ 99 (109)
T 1x4a_A 94 EFPRSG 99 (109)
T ss_dssp ECCCCC
T ss_pred EEcccC
Confidence 999864
No 90
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=118.42 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=74.3
Q ss_pred CCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
.......++|||+|||+++++++|+++|+.|+ +++++.++.+++++|||||+|.+.+ +|.+|++.||+. ++|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l 84 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEE-DAKAAKEAMEDGEIDGNKV 84 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHH-HHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHH-HHHHHHHHhCCCeECCeEE
Confidence 34455678999999999999999999999874 6778899889999999999997777 999999999999 999999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|.|+++.
T Consensus 85 ~V~~a~~~ 92 (102)
T 2fc8_A 85 TLDWAKPK 92 (102)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999864
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.85 E-value=4.6e-21 Score=130.00 Aligned_cols=83 Identities=13% Similarity=0.196 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+.+|++||.|..|.++.++.+|.++|||||+|.+.+ +|..|++.|||. ++|+.|+|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK-QALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHH-HHHHHHHHhCCCEECCEEEEEE
Confidence 445779999999999999999999999999999999999999999999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 148 ~a~~~ 152 (165)
T 1rk8_A 148 WCFVK 152 (165)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 98754
No 92
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.85 E-value=2.5e-21 Score=127.97 Aligned_cols=84 Identities=12% Similarity=0.134 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCc---eEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGT---VLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~---i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
+..+.++|||+|||+++++++|+++|++||. |.+++++.|+. |+++|||||+|.+.+ +|++|++ +|+. ++|+.
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e-~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSED-DVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHH-HHHHHHT-TTEEESSSSE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHH-HHHHHHh-cCCCEECCEE
Confidence 3455789999999999999999999999999 89999999998 999999999997776 9999999 9999 99999
Q ss_pred EEEEecccccc
Q psy8615 115 LKPSFNTYVLM 125 (128)
Q Consensus 115 l~V~~~~~~~~ 125 (128)
|+|.++++.-|
T Consensus 117 i~V~~a~~~e~ 127 (136)
T 2hgl_A 117 IEVFKSHRTEM 127 (136)
T ss_dssp EEEEECCHHHH
T ss_pred EEEEECChHHH
Confidence 99999876543
No 93
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=9.1e-21 Score=118.61 Aligned_cols=80 Identities=18% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.....++|||+|||+++++++|+++|++||.| +++.+ .+|+++|||||+|.+.+ +|++|++.||+. ++|+.|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFE-DAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHH-HHHHHHHHTSSEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHH-HHHHHHHHhCCCEeCCeEEEE
Confidence 44557899999999999999999999999987 45666 56999999999997777 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 86 ~~a~~~ 91 (101)
T 2fc9_A 86 ELQGPR 91 (101)
T ss_dssp EECSSC
T ss_pred EEcCCC
Confidence 999875
No 94
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=1e-21 Score=128.65 Aligned_cols=84 Identities=13% Similarity=0.212 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEE--EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-----C
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS--AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-----L 110 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~--~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-----~ 110 (128)
..+...++|||+|||+++++++|+++|++||.|.. |+++.|+.||+++|||||+|.+ . +|.+|++.|||. +
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~-~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLST-I-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCH-H-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECC-H-HHHHHHHHhcCCCCCccC
Confidence 34455789999999999999999999999999977 9999999999999999999954 4 899999999993 8
Q ss_pred CCeEEEEEecccc
Q psy8615 111 GQSFLKPSFNTYV 123 (128)
Q Consensus 111 ~~~~l~V~~~~~~ 123 (128)
+|+.|+|.|.++.
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 9999999999864
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.5e-21 Score=123.75 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCc-eEEEEEE-ecCCCCCcceEEEEEEecCHHHHHHHHHHhc--Cc-CCCeEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGT-VLSAKVF-IDKQNNRSKCFGTIIFMRKFFILTIRFDTAN--DY-LGQSFL 115 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~-i~~~~~~-~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~--g~-~~~~~l 115 (128)
.+.++|||+|||+++++++|+++|++||. |.++.++ .++.+|+++|||||+|.+.+ +|..|++.|| +. ++|+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~-~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHR-AAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHH-HHHHHHTTTTTCCSCBTTBCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHH-HHHHHHHHhhCCCceecCCeE
Confidence 45789999999999999999999999998 9999998 88889999999999997777 9999999996 57 999999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|.|+++.
T Consensus 85 ~V~~a~~~ 92 (109)
T 2dis_A 85 AVDWAEPE 92 (109)
T ss_dssp EEEESCSS
T ss_pred EEEEcCCC
Confidence 99999865
No 96
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.3e-21 Score=123.92 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC--c-CCCeEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND--Y-LGQSFLK 116 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g--~-~~~~~l~ 116 (128)
....++|||+|||++++|++|+++|++||.|.+++++.+ +|||||+|++.+ +|+.|++.+++ . +.|++|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~-~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHH-HHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHH-HHHHHHHHhccCCceECCEEEE
Confidence 345789999999999999999999999999999998865 789999997777 99999999874 5 9999999
Q ss_pred EEecccccc
Q psy8615 117 PSFNTYVLM 125 (128)
Q Consensus 117 V~~~~~~~~ 125 (128)
|+|+++.-+
T Consensus 86 V~~A~~~~~ 94 (105)
T 1sjq_A 86 IQFSNHKEL 94 (105)
T ss_dssp BCCCSSSSC
T ss_pred EEEcCCCCC
Confidence 999987643
No 97
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.84 E-value=5.5e-22 Score=121.71 Aligned_cols=79 Identities=14% Similarity=0.280 Sum_probs=71.2
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~ 122 (128)
++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ |..|++.|||. ++|+.|+|.|+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~--a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES--VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH--HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH--HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 58999999999999999999999999999999999999999999999995544 99999999999 9999999999987
Q ss_pred cc
Q psy8615 123 VL 124 (128)
Q Consensus 123 ~~ 124 (128)
..
T Consensus 80 ~~ 81 (90)
T 2ki2_A 80 KK 81 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 98
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=123.78 Aligned_cols=83 Identities=8% Similarity=0.039 Sum_probs=75.6
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCc---eEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGT---VLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~---i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
+....++|||+|||+++++++|+++|++||. |.+++++.++. |+++|||||+|.+.+ +|.+|++ +|+. ++|+.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~-~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQ-DVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHH-HHHHHHT-TTTCCSSSSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHH-HHHHHHH-hCcceeCCeE
Confidence 3456789999999999999999999999998 89999999988 999999999997766 9999999 9999 99999
Q ss_pred EEEEeccccc
Q psy8615 115 LKPSFNTYVL 124 (128)
Q Consensus 115 l~V~~~~~~~ 124 (128)
|+|.++++.-
T Consensus 84 i~V~~a~~~~ 93 (107)
T 2lmi_A 84 VEVYEINNED 93 (107)
T ss_dssp CCCEECCHHH
T ss_pred EEEEECCHHH
Confidence 9999988643
No 99
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.84 E-value=1.1e-20 Score=132.63 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
+.++|||+|||++++|++|+++|++||.|.+|+++.|+.||+++|||||+|.+.+ +|.+|++.+|+. +.|+.|++.+.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~-~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPA-DAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHH-HHHHHHHHhhhhhcCCcccccccc
Confidence 3579999999999999999999999999999999999999999999999997777 999999999999 99999999998
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 653
No 100
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1.1e-20 Score=118.70 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=68.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc---CCCeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY---LGQSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~---~~~~~l~V 117 (128)
++..+|||+|||+++++++|+++|++||.|.+++++. .||||||+|++.+ +|..|++.|++. ++|++|+|
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~-~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVL-GACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHH-HHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHH-HHHHHHHHhcCCCceeCCcEEEE
Confidence 4567999999999999999999999999999999874 3789999997777 999999999985 78999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
+|++..
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999874
No 101
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.84 E-value=6.7e-21 Score=116.61 Aligned_cols=74 Identities=9% Similarity=0.114 Sum_probs=68.1
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
...|||+||+++++|++|+++|.+||+|.++++.. ++|||||+|.+.+ +|..|++.||+. ++|++|+|.+++
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~-eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTRE-EANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHH-HHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHH-HHHHHHHHhcCCEECCcEEEEEECC
Confidence 56899999999999999999999999999999865 5899999997766 999999999999 999999999987
Q ss_pred cc
Q psy8615 122 YV 123 (128)
Q Consensus 122 ~~ 123 (128)
..
T Consensus 80 e~ 81 (89)
T 2wbr_A 80 EN 81 (89)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 102
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.9e-21 Score=124.00 Aligned_cols=82 Identities=10% Similarity=0.113 Sum_probs=73.1
Q ss_pred CCeEEEcCC----CCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEec----CHHH---HHHHHH--HhcCc
Q psy8615 43 GANLFIYHL----PPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMR----KFFI---LTIRFD--TANDY 109 (128)
Q Consensus 43 ~~~l~V~nL----p~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~----~~~~---a~~Ai~--~l~g~ 109 (128)
+++|||+|| |+.+++.+|+.+|++||+|.+++++.|+.||+++|||||+|.+ +++. |.+|+. .+||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 9999999999999999999999999999999999999999974 3312 889988 78999
Q ss_pred -CCCeEEEEEeccccc
Q psy8615 110 -LGQSFLKPSFNTYVL 124 (128)
Q Consensus 110 -~~~~~l~V~~~~~~~ 124 (128)
++|+.|+|.++..-.
T Consensus 82 ~I~Gr~irV~ln~~g~ 97 (136)
T 2j8a_A 82 FIMGFKFEVILNKHSI 97 (136)
T ss_dssp EETTEEEEEEECCTTH
T ss_pred eecCcEEEEEECcccH
Confidence 999999999987643
No 103
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=8.8e-21 Score=119.66 Aligned_cols=76 Identities=9% Similarity=-0.006 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC--c-CCCeEE
Q psy8615 40 GPEGANLFIYHLPP-EFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND--Y-LGQSFL 115 (128)
Q Consensus 40 ~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g--~-~~~~~l 115 (128)
..+.++|||+|||+ ++++++|+++|++||.|.++.++.+ +|||||+|++.+ +|..|++.||+ . +.|++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~-~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTE-DAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHH-HHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHH-HHHHHHHHHcCCCceECCcEE
Confidence 34578999999999 9999999999999999999998865 579999997777 99999999986 3 899999
Q ss_pred EEEeccc
Q psy8615 116 KPSFNTY 122 (128)
Q Consensus 116 ~V~~~~~ 122 (128)
+|+|++.
T Consensus 85 ~V~~a~~ 91 (102)
T 1x4d_A 85 RVHLSQK 91 (102)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9999984
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.83 E-value=1.9e-21 Score=117.30 Aligned_cols=73 Identities=11% Similarity=0.202 Sum_probs=66.1
Q ss_pred CCeEEEcCCCCCC------CHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe-E
Q psy8615 43 GANLFIYHLPPEF------SDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS-F 114 (128)
Q Consensus 43 ~~~l~V~nLp~~~------~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~-~ 114 (128)
.++|||+|||.++ ++++|+++|++||.|.++++. +.+|+++|||||+|.+.+ +|..|++.|||. ++|+ +
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~-~A~~Ai~~lng~~~~g~~~ 77 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPA-HAVDAVKNADGYKLDKQHT 77 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHH-HHHHHHTTSSSCCCSSSSC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHH-HHHHHHHHhcCcccCCcee
Confidence 3689999999999 779999999999999999877 467999999999997777 999999999999 9998 8
Q ss_pred EEEE
Q psy8615 115 LKPS 118 (128)
Q Consensus 115 l~V~ 118 (128)
|+|+
T Consensus 78 l~V~ 81 (81)
T 2krb_A 78 FRVN 81 (81)
T ss_dssp CCCC
T ss_pred EEeC
Confidence 8874
No 105
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.7e-20 Score=123.32 Aligned_cols=83 Identities=23% Similarity=0.303 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.....++|||+|||.++++++|+++|++||.|.++++..++.+|.++|||||+|.+.+ +|.+|++.|||. ++|+.|+|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQD-DAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHH-HHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHH-HHHHHHHHhCCCccCCcEEEE
Confidence 3455779999999999999999999999999999999999999999999999997777 999999999999 99999999
Q ss_pred Eeccc
Q psy8615 118 SFNTY 122 (128)
Q Consensus 118 ~~~~~ 122 (128)
+|+++
T Consensus 162 ~~a~~ 166 (166)
T 3md3_A 162 NWAAK 166 (166)
T ss_dssp EESCC
T ss_pred EecCC
Confidence 99874
No 106
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=115.68 Aligned_cols=80 Identities=21% Similarity=0.340 Sum_probs=71.9
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
....+.++|||+|||+++++++|+++|++||.|.++++..+ +|||||+|.+.+ +|.+|++.||+. ++|+.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~-~a~~a~~~l~g~~~~g~~l~ 82 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRT-LAEIAKVELDNMPLRGKQLR 82 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSH-HHHHHHHHHTTCCBTTBCCE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHH-HHHHHHHHhCCCEeCCceEE
Confidence 33455789999999999999999999999999999998744 789999998888 999999999999 9999999
Q ss_pred EEeccccc
Q psy8615 117 PSFNTYVL 124 (128)
Q Consensus 117 V~~~~~~~ 124 (128)
|.|.++.-
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpj_A 83 VRFACHSA 90 (99)
T ss_dssp EEESSCCS
T ss_pred EEEcCCCC
Confidence 99998753
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=8.3e-21 Score=124.13 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=70.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----hhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLA----SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~----~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
....++|||+|||+++++++|+ ++|++||.|.+|.+. .+|+++|||||+|.+.+ +|..|++.|||. +.|++
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~-~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQE-SAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHH-HHHHHHHHSTTCCCTTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHH-HHHHHHHHHCCCEeCCCE
Confidence 3447899999999999999876 699999999988764 35889999999997777 999999999999 99999
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|.|++..
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999999864
No 108
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.9e-20 Score=121.14 Aligned_cols=79 Identities=16% Similarity=0.145 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC--c-CCCeEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND--Y-LGQSFLK 116 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g--~-~~~~~l~ 116 (128)
.++.++|||+|||++++|++|+++|++||.|.+++++.+ +|||||+|++.+ +|..|++.+++ . ++|++|+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e-~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEE-AANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHH-HHHHHHHHHHHHCCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHH-HHHHHHHHhccCCceECCeEEE
Confidence 345789999999999999999999999999999998865 789999997777 99999999985 5 9999999
Q ss_pred EEecccccc
Q psy8615 117 PSFNTYVLM 125 (128)
Q Consensus 117 V~~~~~~~~ 125 (128)
|+|+++.-+
T Consensus 101 V~~a~~k~~ 109 (119)
T 2ad9_A 101 IQFSNHKEL 109 (119)
T ss_dssp EEECSSSSC
T ss_pred EEEccCCCC
Confidence 999987543
No 109
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=120.32 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=71.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
+.++|||+|||+++++++|+++|++| .|.+++++.|+. |+++|||||+|.+.+ +|.+|+ .+|+. ++|+.|+|...
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~-~a~~Al-~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQ-DTFEAL-KRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHH-HHHHHH-HTTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHH-HHHHHH-hcCCCeECCeEEEEEEC
Confidence 35799999999999999999999999 899999999987 999999999997777 999999 79999 99999999887
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
++.
T Consensus 91 ~~~ 93 (109)
T 2dnn_A 91 TER 93 (109)
T ss_dssp CHH
T ss_pred Ccc
Confidence 653
No 110
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=8.7e-22 Score=123.30 Aligned_cols=81 Identities=19% Similarity=0.098 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.. .++.++.+|+++|||||+|.+.+ +|.+|++ ||+. ++|+.|+|.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~-~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAE-DLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHH-HHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHH-HHHHHHh-cCCcEECCcEEEEEE
Confidence 34779999999999999999999999999988 77788888999999999997777 9999999 9999 9999999999
Q ss_pred ccccc
Q psy8615 120 NTYVL 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
+++.-
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98653
No 111
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=117.13 Aligned_cols=78 Identities=15% Similarity=0.034 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC--c-CCCeEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND--Y-LGQSFLK 116 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g--~-~~~~~l~ 116 (128)
.++.++|||+|||+++++++|+++|++||.|.++.++.+ ||||||+|++.+ +|..|++.|++ . ++|++|+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~-~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENID-SAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHH-HHHHHHHHHHHSCCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHH-HHHHHHHHhccCCceECCEEEE
Confidence 344679999999999999999999999999999988753 789999997777 99999999875 3 8999999
Q ss_pred EEeccccc
Q psy8615 117 PSFNTYVL 124 (128)
Q Consensus 117 V~~~~~~~ 124 (128)
|+|++..-
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99998653
No 112
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=2.6e-20 Score=119.08 Aligned_cols=79 Identities=14% Similarity=0.287 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.+++++.+ +.++|||||+|.+.+ +|..|++.|||. ++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIF-DAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHH-HHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHH-HHHHHHHHcCCCEECCeEEEEEE
Confidence 34679999999999999999999999999999999876 556999999997777 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
.++.
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9864
No 113
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=112.38 Aligned_cols=76 Identities=16% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHh-cCc-CCCeEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTA-NDY-LGQSFLK 116 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l-~g~-~~~~~l~ 116 (128)
.+...++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.+ +|..|++.| ++. ++|+.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~-~A~~a~~~l~~~~~~~g~~l~ 80 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQ-AAEVAAEKSFNKLIVNGRRLN 80 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHH-HHHHHHHTTTTTCEETTEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHH-HHHHHHHHhcCCeeECCCEEE
Confidence 3455789999999999999999999999999999998864 789999997777 999999999 988 9999999
Q ss_pred EEecc
Q psy8615 117 PSFNT 121 (128)
Q Consensus 117 V~~~~ 121 (128)
|.|++
T Consensus 81 v~~ak 85 (85)
T 2ytc_A 81 VKWGR 85 (85)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99975
No 114
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=3.8e-22 Score=128.02 Aligned_cols=83 Identities=17% Similarity=0.237 Sum_probs=77.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEE--------EEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLS--------AKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~--------~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
..+.++|||+|||.++++++|+++|++||.|.+ ++++.++.+|+++|||||+|.+.+ +|..|++.||+. +
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPP-SAKAAIDWFDGKEF 82 (116)
Confidence 455789999999999999999999999999999 899999999999999999998887 999999999999 9
Q ss_pred CCeEEEEEecccc
Q psy8615 111 GQSFLKPSFNTYV 123 (128)
Q Consensus 111 ~~~~l~V~~~~~~ 123 (128)
+|+.|+|.|+++.
T Consensus 83 ~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 SGNPIKVSFATRR 95 (116)
Confidence 9999999998764
No 115
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-21 Score=122.47 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=71.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.++.+..+..+|+++|||||+|.+.+ +|..|++.||+. ++|+.|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~-~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKE-IAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHH-HHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHH-HHHHHHHHhCCCEeCCcEEEEE
Confidence 345789999999999999999999999999944333333336899999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 101 ~a~~~ 105 (115)
T 2cpx_A 101 FGKNK 105 (115)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 99864
No 116
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.6e-20 Score=113.95 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC--CeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG--QSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~--~~~l~V 117 (128)
+..++|||+|||.++++++|+++|++||.|.++++..+ +|||||+|.+.+ +|++|++.||+. +. |+.|+|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~-~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLD-AAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHH-HHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHH-HHHHHHHHHCCCEeCCCCcEEEE
Confidence 44689999999999999999999999999999987643 789999997777 999999999999 88 999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 88 ~~a~~~ 93 (97)
T 1why_A 88 DFAKSG 93 (97)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999875
No 117
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.2e-20 Score=116.06 Aligned_cols=75 Identities=21% Similarity=0.272 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC-----eE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ-----SF 114 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~-----~~ 114 (128)
...++|||+|||+++++++|+++|++||.|.+++++.+ |||||+|.+.+ +|+.|++.||+. +.| +.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~-~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKE-DMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHH-HHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHH-HHHHHHHHHCcCCccCCcCcceE
Confidence 34789999999999999999999999999999999876 89999997777 999999999999 988 99
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|.++++.
T Consensus 85 i~V~~a~~~ 93 (108)
T 1x4c_A 85 IRVKVDGPR 93 (108)
T ss_dssp EEEEESSCC
T ss_pred EEEEeCCCC
Confidence 999998864
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=3.5e-20 Score=117.78 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=69.7
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
......++|||+|||+++++++|+++|++||.|.++++. +|||||+|.+.+ +|+.|++.|||. ++|+.|+
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAE-SAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHH-HHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHH-HHHHHHHHcCCCEECCeEEE
Confidence 345567899999999999999999999999999999987 789999997777 999999999999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|.|+++.
T Consensus 97 V~~a~~~ 103 (108)
T 2jvo_A 97 VVYSKLP 103 (108)
T ss_dssp EESCSCC
T ss_pred EEEecCC
Confidence 9999864
No 119
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.9e-20 Score=117.18 Aligned_cols=76 Identities=18% Similarity=0.275 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
.+..++|||+|||.++++++|+++|++||.|.++++. +++|||||+|.+.+ +|..|++.|||. ++|+.|+|.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHE-QAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHH-HHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHH-HHHHHHHHhCCCeECCeEEEEE
Confidence 3447899999999999999999999999999999987 35899999997777 999999999999 999999999
Q ss_pred eccc
Q psy8615 119 FNTY 122 (128)
Q Consensus 119 ~~~~ 122 (128)
|+++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9986
No 120
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-20 Score=118.25 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC--c-CCCeEE
Q psy8615 40 GPEGANLFIYHLPPE-FSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND--Y-LGQSFL 115 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~-~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g--~-~~~~~l 115 (128)
....++|||+|||++ +++++|+++|++||.|.+++++. ++|||||+|++.+ +|..|++.|++ . +.|++|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~-~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETRE-DAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHH-HHHHHHHHHHHSCCCSSSSCC
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHH-HHHHHHHHhccCCceECCEEE
Confidence 445789999999998 99999999999999999999863 3789999997777 99999999864 4 899999
Q ss_pred EEEeccc
Q psy8615 116 KPSFNTY 122 (128)
Q Consensus 116 ~V~~~~~ 122 (128)
+|+|++.
T Consensus 95 ~V~~a~~ 101 (112)
T 1x4f_A 95 KVDLSEK 101 (112)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9999875
No 121
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.82 E-value=1.1e-19 Score=122.53 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|.+|++.|||. ++|+.|+|+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN-VTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTT-HHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHH-HHHHHHHHcCCCEECCeEEEEEe
Confidence 34789999999999999999999999999999999999988999999999998888 999999999999 9999999999
Q ss_pred cc
Q psy8615 120 NT 121 (128)
Q Consensus 120 ~~ 121 (128)
++
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 122
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.82 E-value=8.1e-21 Score=117.88 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----hhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLA----SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~----~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
.+..++|||+|||+++++++|+ ++|++||.|.++++.. +|.++|||||+|.+.+ +|..|++.|||. ++|+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVS-SATNALRSMQGFPFYDKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHH-HHHHHHHHHTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHH-HHHHHHHHhCCCEECCcE
Confidence 4457899999999999999999 9999999999998763 4788999999997777 999999999999 99999
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|+|+++.
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999875
No 123
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=8e-20 Score=122.27 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=75.9
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|++.+||. ++|+.|+|.|.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~-~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPK-DAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHH-HHHHHHHHcCCCccCCceEEEEecC
Confidence 579999999999999999999999999999999999989999999999997777 999999999999 999999999987
Q ss_pred cc
Q psy8615 122 YV 123 (128)
Q Consensus 122 ~~ 123 (128)
+.
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 124
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.82 E-value=3e-20 Score=127.62 Aligned_cols=83 Identities=24% Similarity=0.272 Sum_probs=77.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.+|++..++ +|.++|||||+|.+.+ +|..|++.||+. ++|+.|+|.|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~-~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRA-DALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHH-HHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHH-HHHHHHHHhCCCEECCEEEEEEE
Confidence 446899999999999999999999999999999999998 7999999999997777 999999999999 9999999999
Q ss_pred cccccc
Q psy8615 120 NTYVLM 125 (128)
Q Consensus 120 ~~~~~~ 125 (128)
++....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 987654
No 125
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.82 E-value=4.6e-21 Score=113.74 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=69.4
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
+|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.+ +|.+|++. ++. ++|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE-PVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSH-HHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHH-HHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999999999999999999999999999999998888 99999986 777 99999999874
No 126
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.82 E-value=1.4e-20 Score=117.98 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.+++++.++ +|+++|||||+|.+.+ +|..|++ ++. ++|+.|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~-~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDV-DVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCC-CHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHH-HHHHHHh--CCCeECCEEEEEEE
Confidence 346799999999999999999999999999999999998 8999999999998888 9999999 888 9999999988
Q ss_pred ccc
Q psy8615 120 NTY 122 (128)
Q Consensus 120 ~~~ 122 (128)
..+
T Consensus 83 a~~ 85 (102)
T 2xs2_A 83 AIR 85 (102)
T ss_dssp EEE
T ss_pred CCc
Confidence 764
No 127
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=6.8e-20 Score=114.27 Aligned_cols=78 Identities=21% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCCCCCCCeEEEcCCCC-CCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 37 QLTGPEGANLFIYHLPP-EFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 37 ~~~~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
....+..++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.+ +|.+|++.|||. ++|+.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~-~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQ-SVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHH-HHHHHHHHHTTSEETTEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHH-HHHHHHHHcCCCEECCEE
Confidence 34455688999999998 99999999999999999999872 789999997777 999999999999 99999
Q ss_pred EEEEecccc
Q psy8615 115 LKPSFNTYV 123 (128)
Q Consensus 115 l~V~~~~~~ 123 (128)
|+|.|++..
T Consensus 87 l~V~~a~~~ 95 (97)
T 2xnq_A 87 LILEVSSSN 95 (97)
T ss_dssp CEEEECCCC
T ss_pred EEEEecCCC
Confidence 999998764
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=113.90 Aligned_cols=78 Identities=14% Similarity=0.216 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|. ++++.+ +++|||||+|.+.+ +|+.|++.|||. ++|+.|+|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSA-AAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHH-HHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHH-HHHHHHHHhCCCEECCcEEEEE
Confidence 34478999999999999999999999999996 666654 66999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99874
No 129
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.7e-20 Score=112.21 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=68.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.++++. +|||||+|.+.+ +|+.|++.||+. ++|+.|+|.|
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKT-AAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHH-HHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHH-HHHHHHHHhcCCccCCcEEEEEE
Confidence 457899999999999999999999999999999887 679999997777 999999999999 9999999999
Q ss_pred ccccc
Q psy8615 120 NTYVL 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
+++..
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98653
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-20 Score=115.28 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=69.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|..+ ..+|+++|||||+|.+.+ +|..|++.|||. ++|+.|+|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEA-DAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHH-HHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHH-HHHHHHHHhCCCEECCeEEEEE
Confidence 4457899999999999999999999999988765 345899999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 98764
No 131
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.81 E-value=1.2e-19 Score=126.35 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|.+|++.|||. ++|+.|+|.|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~-~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQ-SSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHHTTCBCSSSBCEEEE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHH-HHHHHHHHccCCEeCCcEEEEEE
Confidence 44679999999999999999999999999999999999999999999999997776 999999999999 9999999999
Q ss_pred ccccccc
Q psy8615 120 NTYVLMN 126 (128)
Q Consensus 120 ~~~~~~~ 126 (128)
+++...+
T Consensus 202 a~~~~~~ 208 (216)
T 2qfj_A 202 AVTPPMP 208 (216)
T ss_dssp CSSCSST
T ss_pred ecCCCCC
Confidence 9987654
No 132
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.81 E-value=2.7e-19 Score=123.07 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.++++..++.+|.++|||||+|.+.+ +|.+|++.|||. ++|+.|+|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDIN-VTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSS-HHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHH-HHHHHHHHcCCCEECCEEEEEEE
Confidence 55789999999999999999999999999999999999988999999999998888 999999999999 9999999999
Q ss_pred ccccc
Q psy8615 120 NTYVL 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
+++..
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98753
No 133
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.81 E-value=2e-19 Score=114.20 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 41 PEGANLFIYHLPPE-FSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~-~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
...++|||+|||++ +++++|+++|++||.|.++++ ++|||||+|.+.+ +|..|++.||+. ++|+.|+|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNER-HARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSH-HHHHHHHHHTTCEETTEECCEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHH-HHHHHHHHcCCCEECCeEEEEE
Confidence 34689999999999 999999999999999999987 4889999998888 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99753
No 134
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.7e-20 Score=116.96 Aligned_cols=78 Identities=15% Similarity=0.298 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||.++++++|+.+|++||.|.++++..+ +|||||+|.+.+ +|..|++.|||. ++|+.|+|.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHE-SAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHH-HHHHHHHHcCCCEECCcEEEEE
Confidence 455789999999999999999999999999999998866 789999997777 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
|+++..
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 998753
No 135
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.81 E-value=6.5e-20 Score=123.11 Aligned_cols=81 Identities=19% Similarity=0.298 Sum_probs=76.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||+++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|..|++.+++. ++|+.|+|.|.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEM-DSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHH-HHHHHHHhcCCCEeCCcEEEEEec
Confidence 3689999999999999999999999999999999999989999999999997776 999999999999 99999999998
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
++.
T Consensus 81 ~~~ 83 (168)
T 1b7f_A 81 RPG 83 (168)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 136
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.81 E-value=2.5e-20 Score=119.20 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=69.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
...++|||+|||+++++++|+++|++|| .|..+++.. ++++|||||+|.+.+ +|+.|++.|||. ++|+.|+|.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e-~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEE-ILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHH-HHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHH-HHHHHHHHcCCCEECCeEEEEE
Confidence 3468999999999999999999999999 899988753 357999999997776 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98754
No 137
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.81 E-value=4.7e-20 Score=120.36 Aligned_cols=81 Identities=7% Similarity=0.165 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceE--EEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVL--SAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~--~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
...++|||+|||++++|++|+++|++| .|. +|+++.|+. |+++|||||+|.+.+ +|++|++. ++. ++|+.|+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e-~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQE-LAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTT-HHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHH-HHHHHHHH-CCCEECCEEEEE
Confidence 446789999999999999999999999 576 899999988 999999999998888 99999986 557 99999999
Q ss_pred Eecccccc
Q psy8615 118 SFNTYVLM 125 (128)
Q Consensus 118 ~~~~~~~~ 125 (128)
..+++.-|
T Consensus 116 ~~a~~~e~ 123 (126)
T 2hgm_A 116 FKSSQEEV 123 (126)
T ss_dssp EEECHHHH
T ss_pred EECCHHHh
Confidence 98876543
No 138
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.80 E-value=7.9e-20 Score=121.93 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=72.5
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
......++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.+ +|..|++.|||. ++|++|+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPR-DAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHH-HHHHHHHHHSSSCSSSSCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHH-HHHHHHHHcCCCEECCeEEE
Confidence 33455789999999999999999999999999999999876 5899999997777 999999999999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|+|+++.
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999864
No 139
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.80 E-value=2.6e-19 Score=117.26 Aligned_cols=79 Identities=18% Similarity=0.205 Sum_probs=70.5
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceE-EEEEEecCHHHHHHHHHHhcCc-CCC--eEEEEE
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCF-GTIIFMRKFFILTIRFDTANDY-LGQ--SFLKPS 118 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~-~fv~f~~~~~~a~~Ai~~l~g~-~~~--~~l~V~ 118 (128)
-..|||+||++.+++++|+++|++||.|.++++..+. +|| |||+|++.+ +|..|++.|||. +.| +.|+|+
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~-~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPV-SAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHH-HHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHH-HHHHHHHHcCCCeecCCCcEEEEE
Confidence 4578999999999999999999999999999887542 678 999997777 999999999999 755 999999
Q ss_pred ecccccccc
Q psy8615 119 FNTYVLMNV 127 (128)
Q Consensus 119 ~~~~~~~~~ 127 (128)
|+++.-+|+
T Consensus 102 ~ak~~~l~v 110 (130)
T 3zzy_A 102 FSKLTSLNV 110 (130)
T ss_dssp ECSCSSCCC
T ss_pred ecCCCceeE
Confidence 999987765
No 140
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.1e-20 Score=120.79 Aligned_cols=81 Identities=11% Similarity=0.115 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCce----EEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTV----LSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i----~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
.+.++|||+|||+++++++|+++|++||.| .+|+++.|+ +|+++|||||+|.+.+ +|.+|++. |+. ++++.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~-~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEE-YAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHH-HHHHHHTT-TTEESSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHH-HHHHHHHh-CCCeeCCeEE
Confidence 457899999999999999999999999875 689999995 7999999999997777 99999997 888 999999
Q ss_pred EEEeccccc
Q psy8615 116 KPSFNTYVL 124 (128)
Q Consensus 116 ~V~~~~~~~ 124 (128)
+|..+++.-
T Consensus 98 ~V~~a~~~e 106 (123)
T 2dha_A 98 ELFRSTAAE 106 (123)
T ss_dssp CCEEECHHH
T ss_pred EEEECCHHH
Confidence 998887643
No 141
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=3e-20 Score=116.21 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=69.1
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~ 122 (128)
++|||+|||+++++++|+++|++||.|.++++..+ ++|||||+|.+.+ +|.+|++.||+. ++|+.|+|.|+++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPR-DAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHH-HHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHH-HHHHHHHHHCCCeECCcEEEEEEccC
Confidence 58999999999999999999999999999999877 6899999997777 999999999999 9999999999976
Q ss_pred c
Q psy8615 123 V 123 (128)
Q Consensus 123 ~ 123 (128)
.
T Consensus 75 ~ 75 (101)
T 2hvz_A 75 M 75 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=110.26 Aligned_cols=77 Identities=14% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.....++|||+|||+++++++|+++|++||.|.++++. ++||||+|.+.+ +|.+|++.||+. ++|+.|+|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAE-DAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHH-HHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHH-HHHHHHHHhCCCeeCCcEEEE
Confidence 34557899999999999999999999999999999886 349999997777 999999999999 99999999
Q ss_pred Eeccccc
Q psy8615 118 SFNTYVL 124 (128)
Q Consensus 118 ~~~~~~~ 124 (128)
.|+++..
T Consensus 77 ~~a~~~~ 83 (92)
T 2dgt_A 77 QLSTSRL 83 (92)
T ss_dssp EESSCCC
T ss_pred EEccCCC
Confidence 9998753
No 143
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.7e-20 Score=112.84 Aligned_cols=78 Identities=22% Similarity=0.236 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEE-EEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAK-VFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~-~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
...++|||+|||+++++++|+++|++||.|.+++ ++.++.+|. |||+|.+.+ +|..|++.|||. ++|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~-~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKD-QARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHH-HHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHH-HHHHHHHHhCCCEECCcEEEEE
Confidence 3468999999999999999999999999999994 888876443 999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|.++.
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99875
No 144
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.9e-19 Score=109.70 Aligned_cols=75 Identities=16% Similarity=0.139 Sum_probs=67.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCC--CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPF--GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~--G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
....++|||+|||+++++++|+++|++| |.|.++++. +|||||+|.+.+ +|..|++.||+. ++|+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNRE-DAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHH-HHHHHHHHHSSEEETTEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHH-HHHHHHHHhCCCEeCCcEEE
Confidence 3456899999999999999999999999 899988753 679999997777 999999999999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|.|+++.
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9999874
No 145
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=2.4e-19 Score=138.08 Aligned_cols=83 Identities=10% Similarity=0.167 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++.||+++|||||+|.+.+ +|..||+.|||. |+|+.|+|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e-~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHER-DMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHH-HHHHHHHHcCCCEECCEEEEEEE
Confidence 34579999999999999999999999999999999999999999999999997777 999999999999 9999999999
Q ss_pred ccccc
Q psy8615 120 NTYVL 124 (128)
Q Consensus 120 ~~~~~ 124 (128)
+++..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98654
No 146
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=8.4e-20 Score=116.51 Aligned_cols=76 Identities=12% Similarity=0.115 Sum_probs=68.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||+++++++|+++|++||.|.++.++. ++|||||+|.+.+ +|..|++.|||. ++|+.|+|.|+
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~-~A~~Ai~~l~g~~~~g~~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPL-EARKAFRHLAYSKFHHVPLYLEWA 81 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHH-HHHHHHHHHTTCBSSSSBCEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHH-HHHHHHHHhCCCEECCeEEEEEEC
Confidence 367999999999999999999999999999988763 4789999997777 999999999999 99999999998
Q ss_pred cccc
Q psy8615 121 TYVL 124 (128)
Q Consensus 121 ~~~~ 124 (128)
+..+
T Consensus 82 ~~~~ 85 (111)
T 1whx_A 82 PIGV 85 (111)
T ss_dssp ETTT
T ss_pred CCCc
Confidence 7654
No 147
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.80 E-value=2.2e-20 Score=123.82 Aligned_cols=82 Identities=12% Similarity=0.214 Sum_probs=73.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||++++|++|+++|++|| +.+|+++.|+. |+++|||||+|++.+ +|++|+ .+|+. ++++.|+|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e-~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHE-EAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHH-HHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHH-HHHHHH-hhCCCEECCEEEEEE
Confidence 34567999999999999999999999999 77999999987 999999999997777 999999 88998 999999999
Q ss_pred ecccccc
Q psy8615 119 FNTYVLM 125 (128)
Q Consensus 119 ~~~~~~~ 125 (128)
++++.-+
T Consensus 119 ~a~~~~~ 125 (139)
T 2hgn_A 119 LNSTTGA 125 (139)
T ss_dssp ECCCSCC
T ss_pred ECCCCCC
Confidence 9887543
No 148
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.80 E-value=2.5e-19 Score=109.58 Aligned_cols=76 Identities=9% Similarity=0.123 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.+ +|++|++.|||. ++|+.|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~-~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGE-QAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHH-HHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHH-HHHHHHHHhCCCeECCcEEEEEEc
Confidence 46799999999999999999999999 99999874 56899999997777 999999999999 99999999998
Q ss_pred ccccc
Q psy8615 121 TYVLM 125 (128)
Q Consensus 121 ~~~~~ 125 (128)
+...+
T Consensus 76 ~~~~~ 80 (88)
T 1wg1_A 76 PTDAL 80 (88)
T ss_dssp CCCCC
T ss_pred CCCce
Confidence 76554
No 149
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=2.6e-19 Score=122.95 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=75.1
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
+....++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.+ +|..|++. ++. ++|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVE-EVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHH-HHHHHHhc-CCCEECCEEeee
Confidence 3445789999999999999999999999999999999999999999999999997776 99999987 777 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.+....
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 998653
No 150
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.6e-19 Score=108.72 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|+ ++++++|+++|++||.|.++++. +++|||||+|.+.+ +|.+|++.||+. ++|+.|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~-~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKME-SADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHH-HHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHH-HHHHHHHHhCCCeECCeEEEEE
Confidence 345789999995 99999999999999999999873 56899999997777 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
|+++..
T Consensus 83 ~a~~~~ 88 (97)
T 1x5p_A 83 IARKQP 88 (97)
T ss_dssp CCSSCC
T ss_pred ECCCCC
Confidence 998753
No 151
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.4e-19 Score=112.35 Aligned_cols=75 Identities=23% Similarity=0.306 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 40 GPEGANLFIYHLPP-EFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.++.++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.+ +|..|++.||+. ++|+.|+|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQ-SVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHH-HHHHHHHHHTCSSCBTTTBCE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHH-HHHHHHHHcCCCeeCCcEEEE
Confidence 45578999999999 99999999999999999999873 789999997777 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 998754
No 152
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.5e-20 Score=123.51 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEE--E---EecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAK--V---FIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS 113 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~--~---~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~ 113 (128)
....++|||+|||+++++++|+.+|++||.|.++. + +....+|+++|||||+|.+.+ +|..|++.|||. ++|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~-~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK-AAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHH-HHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHH-HHHHHHHHhCCCEeCCc
Confidence 34568999999999999999999999999987641 1 111246999999999997777 999999999999 9999
Q ss_pred EEEEEecccc
Q psy8615 114 FLKPSFNTYV 123 (128)
Q Consensus 114 ~l~V~~~~~~ 123 (128)
.|+|.|+++.
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999753
No 153
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=3.3e-19 Score=111.97 Aligned_cols=74 Identities=19% Similarity=0.209 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.++++. +|||||+|.+.+ +|.+|++.||+. +.|+.|+|.|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERD-GAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHH-HHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHH-HHHHHHHHHCCCccCCCEEEEEE
Confidence 346899999999999999999999999999999876 559999997777 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+++.
T Consensus 80 a~~~ 83 (103)
T 2dgu_A 80 AKPP 83 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9764
No 154
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=109.98 Aligned_cols=75 Identities=13% Similarity=0.175 Sum_probs=68.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.++++. ++||||+|.+.+ +|..|++.||+. ++|+.|+|.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEA-DAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHH-HHHHHHHHhCCCEECCcEEEEE
Confidence 4557899999999999999999999999999999887 349999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99865
No 155
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.79 E-value=1.2e-18 Score=116.91 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC--eEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ--SFLK 116 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~--~~l~ 116 (128)
....++|||+|||.++++++|+++|++||.|.++++..++.+|+++|||||+|.+.+ +|.+|++.|||. +.| ++|+
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKRE-EAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHHTTCCCTTCSSCCE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHHhcCCEecCCCeEEE
Confidence 445789999999999999999999999999999999999988999999999997777 999999999999 866 9999
Q ss_pred EEec
Q psy8615 117 PSFN 120 (128)
Q Consensus 117 V~~~ 120 (128)
|+|+
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 156
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.79 E-value=3.8e-19 Score=120.57 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=70.3
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC--CeEEEEEe
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG--QSFLKPSF 119 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~--~~~l~V~~ 119 (128)
..+|||+||++.+++++|+++|++||.|.++.+..++ ++|||||+|++.+ +|+.|++.|||. +. ++.|+|+|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~-~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPV-SAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHH-HHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHH-HHHHHHHHhCCCEecCCCcEEEEEE
Confidence 4579999999999999999999999999999986442 5899999997777 999999999999 74 49999999
Q ss_pred cccccccc
Q psy8615 120 NTYVLMNV 127 (128)
Q Consensus 120 ~~~~~~~~ 127 (128)
+++.-.|+
T Consensus 121 Ak~~~l~v 128 (164)
T 1sjr_A 121 SKLTSLNV 128 (164)
T ss_dssp CSSSSCCC
T ss_pred ecCCcccc
Confidence 99876554
No 157
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.78 E-value=1.7e-19 Score=121.12 Aligned_cols=80 Identities=14% Similarity=0.294 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||.++++++|+++|++||.|.++++..++.+|.++|||||+|.+.+ +|.+|++ +++. ++|+.|+|.|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~-~~~~~~~g~~i~V~~a 163 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSAD-AVDRVCQ-NKFIDFKDRKIEIKRA 163 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHH-HHHHHHH-CSEECSSSSCEEEEEC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHH-HHHHHHh-CCCEEeCCeEEEEeec
Confidence 3568999999999999999999999999999999999989999999999997776 9999998 8998 99999999999
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
++.
T Consensus 164 ~pk 166 (167)
T 2cjk_A 164 EPR 166 (167)
T ss_dssp CCC
T ss_pred CCC
Confidence 863
No 158
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.78 E-value=4.8e-19 Score=124.07 Aligned_cols=76 Identities=11% Similarity=0.169 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCC-CCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 41 PEGANLFIYHLP-PEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 41 ~~~~~l~V~nLp-~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
+++++|||+||| +++++++|+++|++||.|.+++++.+ .+|||||+|++.+ +|+.|++.|||. +.|+.|+|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~-~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGY-AVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHH-HHHHHHHHhCCCEECCceEEEE
Confidence 457899999999 89999999999999999999999865 3799999998777 999999999999 999999999
Q ss_pred eccc
Q psy8615 119 FNTY 122 (128)
Q Consensus 119 ~~~~ 122 (128)
|++.
T Consensus 76 ~s~~ 79 (205)
T 3tyt_A 76 VSKQ 79 (205)
T ss_dssp ECSC
T ss_pred EccC
Confidence 9874
No 159
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.78 E-value=6.2e-19 Score=123.62 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||+++++++|+++|++||.|.+++++.|+ +.++|||||+|.+.+ +|.+|++.|||. ++|+.|+|.|++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~-~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQE-AAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHH-HHHHHHHHhCCCEECCEEEEEEEcC
Confidence 5689999999999999999999999999999999986 458999999997777 999999999999 999999999987
Q ss_pred c
Q psy8615 122 Y 122 (128)
Q Consensus 122 ~ 122 (128)
+
T Consensus 180 ~ 180 (213)
T 4f02_A 180 S 180 (213)
T ss_dssp C
T ss_pred C
Confidence 5
No 160
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=5.5e-18 Score=110.25 Aligned_cols=76 Identities=17% Similarity=0.120 Sum_probs=67.0
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceE-EEEEEecCHHHHHHHHHHhcCc-CCC--eEEEEEec
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCF-GTIIFMRKFFILTIRFDTANDY-LGQ--SFLKPSFN 120 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~-~fv~f~~~~~~a~~Ai~~l~g~-~~~--~~l~V~~~ 120 (128)
.|||+||++.+++++|+++|++||.|.++.+.. + .|| |||+|++.+ +|..|++.|||. +.| +.|+|.|+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~-~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVL-CAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHH-HHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHH-HHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 578999999999999999999999999999864 2 276 999997777 999999999999 765 69999999
Q ss_pred ccccccc
Q psy8615 121 TYVLMNV 127 (128)
Q Consensus 121 ~~~~~~~ 127 (128)
++.-.++
T Consensus 100 k~~~l~v 106 (124)
T 2e5i_A 100 RPTRLNV 106 (124)
T ss_dssp SCSCCCC
T ss_pred cCCccee
Confidence 9887654
No 161
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.78 E-value=1.4e-18 Score=119.24 Aligned_cols=81 Identities=9% Similarity=0.108 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
...++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.+ +|.+|++. ++. ++|+.|+|.|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~-~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD-SVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHC-SCCEETTEECEEEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHH-HHHHHHHh-CCcEECCEEEEEEe
Confidence 34579999999999999999999999999999999999989999999999997777 99999987 677 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
+.+.
T Consensus 180 a~~k 183 (196)
T 1l3k_A 180 ALSK 183 (196)
T ss_dssp CC--
T ss_pred cCCh
Confidence 8764
No 162
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.4e-19 Score=110.51 Aligned_cols=75 Identities=13% Similarity=0.201 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCc-eEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC-c-CCCeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGT-VLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND-Y-LGQSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~-i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g-~-~~~~~l~V 117 (128)
...++|||+|||+++++++|+++|++||. |..+.+ .++|||||+|.+.+ +|.+|++.||+ . ++|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~-~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQN-WAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHH-HHHHHHHHHTTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHH-HHHHHHHHccCCeeECCEEEEE
Confidence 34689999999999999999999999999 555554 24789999997777 99999999999 8 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.|+++.
T Consensus 78 ~~a~~~ 83 (93)
T 2cqh_A 78 DYSVSK 83 (93)
T ss_dssp EECCCC
T ss_pred EEccCc
Confidence 999864
No 163
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=108.01 Aligned_cols=71 Identities=18% Similarity=0.224 Sum_probs=62.6
Q ss_pred CCCeEEEcCCCCCCCHHH----HHhhhcCC-CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 42 EGANLFIYHLPPEFSDAD----LASMFGPF-GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~----l~~~f~~~-G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
..|.|||+|||+++++++ |+++|++| |+|.++ || |+|||+|.+.+ +|++|++.|||+ +.||+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~e-sA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQD-SAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHH-HHHHHHHHHTTCCSSSSCC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHH-HHHHHHHHhcCCccCCceE
Confidence 345599999999999988 55899999 599987 34 99999997776 999999999999 999999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|+|++..
T Consensus 77 ~v~~A~~~ 84 (96)
T 2diu_A 77 IVSFTPKN 84 (96)
T ss_dssp EEESSCCS
T ss_pred EEEecCCC
Confidence 99999864
No 164
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=107.96 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.++|||+|||+++++++|+++|++||.|.+| +.++.+|+ ||||+|.+.+ +|..|++ ||+. ++|+.|+|.+++
T Consensus 8 ~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~-~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 8 LRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVG-AREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp CCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHH-HHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHH-HHHHHHh-cCCeEECCEEEEEEECC
Confidence 5699999999999999999999999999987 77777676 9999997766 9999999 9999 999999999886
Q ss_pred cc
Q psy8615 122 YV 123 (128)
Q Consensus 122 ~~ 123 (128)
+.
T Consensus 81 ~~ 82 (94)
T 2e5g_A 81 QK 82 (94)
T ss_dssp CS
T ss_pred cC
Confidence 53
No 165
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.77 E-value=8.4e-19 Score=122.06 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=72.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||.++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|.+|++.||+. ++|+.|+|.+.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPE-AAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHH-HHHHHHHHHSSCCCC-CCCEEECC
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHH-HHHHHHHHccCCeeCCeeEEEecC
Confidence 3679999999999999999999999999999999999989999999999997776 999999999999 99999999887
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
+..
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 166
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=1.9e-18 Score=115.50 Aligned_cols=79 Identities=19% Similarity=0.401 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe--EEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS--FLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~--~l~V 117 (128)
...++|||+|||.++++++|+++|++||.|.++++..++.+|.++|||||+|.+.+ +|.+|++.|||. ++|+ +|+|
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRI-EAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHHTTCCCTTCSSCCEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHH-HHHHHHHHhcCCccCCCccceEE
Confidence 44678999999999999999999999999999999999988999999999997776 999999999999 8885 4888
Q ss_pred Eec
Q psy8615 118 SFN 120 (128)
Q Consensus 118 ~~~ 120 (128)
+|+
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 885
No 167
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=1.5e-18 Score=106.60 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc---CCCeEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY---LGQSFL 115 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~---~~~~~l 115 (128)
.....++|||+|||++++|++|+++|++||.|.+++++.+ ++|||||+|++.+ +|. .+++. +.|+.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~-~A~----~~~~~~~~~~g~~v 76 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDK-VAQ----SLCGEDLIIKGISV 76 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHH-HHH----HHTTCEEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHH-HHH----HHcCCCcccCCEEE
Confidence 3455889999999999999999999999999999998864 6899999997766 766 35664 679999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|.++++.
T Consensus 77 ~v~~a~~k 84 (89)
T 3d2w_A 77 HISNAEPK 84 (89)
T ss_dssp EEEECC--
T ss_pred EEEEcCCC
Confidence 99998764
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.4e-19 Score=113.81 Aligned_cols=77 Identities=16% Similarity=0.025 Sum_probs=67.1
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C-----CC
Q psy8615 41 PEGANLFI--YHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L-----GQ 112 (128)
Q Consensus 41 ~~~~~l~V--~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~-----~~ 112 (128)
....+||| |||++++++++|+++|++||.|.++.++. .+|||||+|.+.+ +|++|++.|||. + ++
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~-~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTE-ESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHH-HHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHH-HHHHHHHHhCCCEEccccCCC
Confidence 34678999 77999999999999999999999987653 2789999997777 999999999998 7 68
Q ss_pred eEEEEEeccccc
Q psy8615 113 SFLKPSFNTYVL 124 (128)
Q Consensus 113 ~~l~V~~~~~~~ 124 (128)
++|.|.|.+.+.
T Consensus 96 ~~l~v~~a~~~p 107 (114)
T 2cq2_A 96 ITLYLNFVEKVQ 107 (114)
T ss_dssp EECEEEEESCCC
T ss_pred cEEEEEecccCc
Confidence 999999987653
No 169
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.2e-18 Score=116.38 Aligned_cols=78 Identities=18% Similarity=0.285 Sum_probs=72.0
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEeccc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~~ 122 (128)
++|||+|||.++++++|+++|++||.|.++++..++. |+++|||||+|.+.+ +|..|++.+||. ++|+.|+|.|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~-~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSH-DANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHH-HHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 4799999999999999999999999999999999986 889999999997777 999999999999 9999999999865
Q ss_pred c
Q psy8615 123 V 123 (128)
Q Consensus 123 ~ 123 (128)
.
T Consensus 79 ~ 79 (166)
T 3md3_A 79 S 79 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1e-18 Score=111.74 Aligned_cols=75 Identities=13% Similarity=0.279 Sum_probs=63.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCC---CCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQN---NRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~t---g~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V 117 (128)
...++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|++.+ +|++|++.|++ +.|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~-~a~~Ai~~~~~-~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEES-SVQALIDACLE-EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHH-HHHHHHHHSEE-ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHH-HHHHHHHhhhh-cCCcEEEe
Confidence 3468999999999999999999999999999 888888877 799999999997777 99999999833 44555544
Q ss_pred E
Q psy8615 118 S 118 (128)
Q Consensus 118 ~ 118 (128)
.
T Consensus 83 ~ 83 (114)
T 2dnl_A 83 V 83 (114)
T ss_dssp E
T ss_pred c
Confidence 4
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.76 E-value=3e-18 Score=115.49 Aligned_cols=81 Identities=17% Similarity=0.292 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCC--CcceEEEEEEecCHHHHHHHHHHhcCc-CC---CeEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNN--RSKCFGTIIFMRKFFILTIRFDTANDY-LG---QSFL 115 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg--~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~---~~~l 115 (128)
+.++|||+|||+++++++|+++|++||.|.+++++.++.+| +++|||||+|.+.+ +|..|++.||+. +. ++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~-~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRK-AALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHH-HHHHHHHHHTTTCCCTTCSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHH-HHHHHHHHhcCcEEccCCccce
Confidence 46899999999999999999999999999999999999877 89999999997777 999999999997 43 5778
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
.+.+.+..
T Consensus 81 ~~~~~~~~ 88 (175)
T 3nmr_A 81 QMKPADSE 88 (175)
T ss_dssp EEEECGGG
T ss_pred EEcccccc
Confidence 88887654
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.75 E-value=3.2e-18 Score=115.30 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC---CeEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG---QSFLK 116 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~---~~~l~ 116 (128)
...++|||+|||.++++++|+++|++||.|.++++..++. |+++|||||+|.+.+ +|.+|++.|||. +. +++|+
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRA-MAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHH-HHHHHHHHHTTSCCCTTCSSCCE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHH-HHHHHHHHhcCCcccCCCCCCeE
Confidence 3567999999999999999999999999999999999975 999999999997777 999999999997 43 49999
Q ss_pred EEec
Q psy8615 117 PSFN 120 (128)
Q Consensus 117 V~~~ 120 (128)
|+|+
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9996
No 173
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.75 E-value=4.7e-18 Score=118.07 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=71.6
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEEEeccc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKPSFNTY 122 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V~~~~~ 122 (128)
.++|||+|||+++++++|+++|++||.|.++++..+.. |+++|||||+|++.+ +|..|++.++..++|+.|+|.|++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e-~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIE-SAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHH-HHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHH-HHHHHHHhCCCeECCEEEEEEEhHH
Confidence 57999999999999999999999999999999999875 999999999997777 9999998776559999999999875
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.75 E-value=1.9e-18 Score=115.87 Aligned_cols=79 Identities=25% Similarity=0.370 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
+.++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.+ +|..|++. +. ++|+.|.|.+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPS-SVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTH-HHHHHHHS--CCEETTEECCCEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHH-HHHHHHhc--ccccCCeEcccccc
Confidence 3679999999999999999999999999999999999999999999999998887 99999985 45 89999999887
Q ss_pred ccc
Q psy8615 121 TYV 123 (128)
Q Consensus 121 ~~~ 123 (128)
.+.
T Consensus 79 ~~~ 81 (167)
T 2cjk_A 79 IPR 81 (167)
T ss_dssp CCH
T ss_pred cch
Confidence 653
No 175
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.75 E-value=7.8e-18 Score=121.95 Aligned_cols=81 Identities=14% Similarity=0.228 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHH----hhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLA----SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS 113 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~----~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~ 113 (128)
+....++|||+|||+++++++|+ ++|++||.|.+|++.. +|+++|||||+|.+.+ +|.+|++.|||. +.|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVS-SATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHH-HHHHHHHHhcCCeeCCc
Confidence 34557899999999999999976 8999999999998775 5889999999997777 999999999999 9999
Q ss_pred EEEEEecccc
Q psy8615 114 FLKPSFNTYV 123 (128)
Q Consensus 114 ~l~V~~~~~~ 123 (128)
.|+|.|.+..
T Consensus 81 ~l~v~~a~~~ 90 (282)
T 3pgw_A 81 PMRIQYAKTD 90 (282)
T ss_pred EEEEEEeccC
Confidence 9999998764
No 176
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.75 E-value=1.5e-18 Score=111.29 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=64.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE-----E
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF-----L 115 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~-----l 115 (128)
..++|||+|||+++++++|+++|++||.|.+++++.+ |||||+|.+.+ +|+.||+.||+. ++|+. +
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~-~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKE-DMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHH-HHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHH-HHHHHHHHhCCCEECCcEeeeEEE
Confidence 3689999999999999999999999999999998765 89999997777 999999999999 99988 6
Q ss_pred EEEeccc
Q psy8615 116 KPSFNTY 122 (128)
Q Consensus 116 ~V~~~~~ 122 (128)
+|...++
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 7766654
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.74 E-value=8.4e-18 Score=113.74 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||.++++++|+++|++||.|..+ ..+|.++|||||+|.+.+ +|.+|++.|||. ++|+.|+|+
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEA-DAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHH-HHHHHHHHHTEEEETTEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHH-HHHHHHHHhCCCEECCeEEEEE
Confidence 3456799999999999999999999999988765 556999999999997777 999999999999 999999999
Q ss_pred ecccc
Q psy8615 119 FNTYV 123 (128)
Q Consensus 119 ~~~~~ 123 (128)
|+++.
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99864
No 178
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.74 E-value=1.1e-17 Score=105.79 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCC-----CCCHHHHHhhhcCCCceEEEEEEecCCC-CCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 42 EGANLFIYHLPP-----EFSDADLASMFGPFGTVLSAKVFIDKQN-NRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 42 ~~~~l~V~nLp~-----~~~e~~l~~~f~~~G~i~~~~~~~~~~t-g~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
..+.|++.|+.. +-.+++|++.|++||.|.++.++.++.+ ++++||+||+|.+.+ +|.+|++.|||. ++||.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~-~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVE-SAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHH-HHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHH-HHHHHHHHHCCCEECCcE
Confidence 456899999952 2378999999999999999999998754 689999999997777 999999999999 99999
Q ss_pred EEEEeccc
Q psy8615 115 LKPSFNTY 122 (128)
Q Consensus 115 l~V~~~~~ 122 (128)
|+|.|.+.
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999865
No 179
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.73 E-value=8.7e-18 Score=108.76 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|+ ++++++|+++|++||.|.++++. .++|||||+|.+.+ +|..|++.|||. ++|+.|+|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~-~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKME-SADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHH-HHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHH-HHHHHHHHhCCCEECCeEEEEE
Confidence 345789999995 79999999999999999999885 46899999997777 999999999999 999999999
Q ss_pred eccccc
Q psy8615 119 FNTYVL 124 (128)
Q Consensus 119 ~~~~~~ 124 (128)
|+++..
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 998754
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.73 E-value=2.7e-17 Score=119.13 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=69.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC-CeEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG-QSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~-~~~l~V 117 (128)
....++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.+ +|.+|++.|||+ ++ |+.|+|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~-~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEV-QAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHH-HHHHHHHHcCCcEeCCCCEEEE
Confidence 3456889999999999999999999999999999998654 689999997777 999999999999 88 999999
Q ss_pred Eeccc
Q psy8615 118 SFNTY 122 (128)
Q Consensus 118 ~~~~~ 122 (128)
+|++.
T Consensus 278 ~~akk 282 (282)
T 3pgw_A 278 SFAKK 282 (282)
T ss_pred EEecC
Confidence 99873
No 181
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.73 E-value=1.6e-17 Score=120.41 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEec
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFN 120 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~ 120 (128)
..++|||+|||+++++++|+++|++||.|.+++++.++.+|.++|||||+|.+.+ +|..|++.|+|. ++|+.|+|.|.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~-~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKD-SAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHH-HHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHH-HHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999997777 999999999999 99999999999
Q ss_pred cccc
Q psy8615 121 TYVL 124 (128)
Q Consensus 121 ~~~~ 124 (128)
++.-
T Consensus 173 ~~~~ 176 (284)
T 3smz_A 173 DAGQ 176 (284)
T ss_dssp CGGG
T ss_pred CCCC
Confidence 8754
No 182
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.73 E-value=1.8e-17 Score=120.21 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCC-CHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 40 GPEGANLFIYHLPPEF-SDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~-~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
....++|||+|||+++ ++++|+++|++||.|.++++..++ +|+++|||||+|.+.+ +|.+|++.|||. ++|+.|+|
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~-~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAE-MAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHH-HHHHHHHHHTTCEETTEECEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHH-HHHHHHHHhCCCccCCeEEEE
Confidence 3557899999999995 999999999999999999999987 5999999999997777 999999999999 99999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
+|.++.
T Consensus 259 ~~a~~~ 264 (284)
T 3smz_A 259 SFCAPG 264 (284)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 999864
No 183
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.72 E-value=8.5e-18 Score=122.30 Aligned_cols=82 Identities=20% Similarity=0.295 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHhhhcCCCceEEEEEEecCC-CCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 40 GPEGANLFIYHLPPE-FSDADLASMFGPFGTVLSAKVFIDKQ-NNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~-~~e~~l~~~f~~~G~i~~~~~~~~~~-tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
....++|||+|||++ +++++|+++|++||.|.+++++.++. ||.++|||||+|.+.+ +|.+|+ .|||. ++|+.|+
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~-~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD-SAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH-HHHHHG-GGTTEEETTEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH-HHHHHH-HhcCCEECCcEEE
Confidence 445789999999999 99999999999999999999999887 6999999999997777 999999 99999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|+|+++.
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999864
No 184
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-18 Score=104.00 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc---CCCeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY---LGQSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~---~~~~~l~V 117 (128)
...++|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|++.+ +|++ +++. +.++.|+|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~-~a~~----~~~~~~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQ-IAQS----LCGEDLIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHH-HHHH----TTTCEEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHH-HHHH----HhcCCceeCCEEEEE
Confidence 34689999999999999999999999999999998754 6899999997766 7764 3443 68999999
Q ss_pred Eecccc
Q psy8615 118 SFNTYV 123 (128)
Q Consensus 118 ~~~~~~ 123 (128)
.++++.
T Consensus 73 ~~a~~~ 78 (88)
T 1wf0_A 73 SNAEPK 78 (88)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998865
No 185
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.71 E-value=8.1e-18 Score=102.17 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCC----C-------ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPF----G-------TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY- 109 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~----G-------~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~- 109 (128)
..++|||+|||+++++++|+++|++| | .|.++++..+ +|||||+|.+.+ +|.+|+ .||+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~-~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVD-ETTQAM-AFDGII 76 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHH-HHHHHG-GGTTCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHH-HHHHHH-hcCCCE
Confidence 46799999999999999999999999 8 8999887644 789999997777 999999 99999
Q ss_pred CCCeEEEEE
Q psy8615 110 LGQSFLKPS 118 (128)
Q Consensus 110 ~~~~~l~V~ 118 (128)
++|+.|+|+
T Consensus 77 ~~g~~l~V~ 85 (87)
T 2hzc_A 77 FQGQSLKIR 85 (87)
T ss_dssp ETTEECEEE
T ss_pred ECCeEEEEe
Confidence 999999987
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.71 E-value=1.5e-17 Score=117.71 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=72.4
Q ss_pred CCCCCCCeEEEcCCCC-CCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 38 LTGPEGANLFIYHLPP-EFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~-~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
...+..++|||+|||+ ++++++|+++|++||.|.++++..++ +|||||+|.+.+ +|.+|++.||+. ++|+.|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~-~A~~Ai~~l~g~~~~g~~l 102 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGN-QAQLAMSHLNGHKLHGKPI 102 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHH-HHHHHHHHHTTCBCSSSBC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHH-HHHHHHHHhCCCeECCeEE
Confidence 3345678999999999 99999999999999999999998875 789999997777 999999999999 999999
Q ss_pred EEEecccc
Q psy8615 116 KPSFNTYV 123 (128)
Q Consensus 116 ~V~~~~~~ 123 (128)
+|.|.++.
T Consensus 103 ~v~~a~~~ 110 (229)
T 2adc_A 103 RITLSKHQ 110 (229)
T ss_dssp EEECCSCC
T ss_pred EEEEecCc
Confidence 99998754
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.69 E-value=4.2e-17 Score=116.71 Aligned_cols=78 Identities=12% Similarity=0.118 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-
Q psy8615 40 GPEGANLFIYHLPPEF---------SDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY- 109 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~---------~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~- 109 (128)
....++|||+||+.++ +|++|+.+|++||.|.+|+++. ++|||||+|.+.+ +|+.|++.|+|.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~-~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQA-NAEFAKEAMSNQT 203 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHH-HHHHHHHHHTTCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHH-HHHHHHHHhCCCE
Confidence 4457899999999998 7999999999999999999884 3889999997776 999999999999
Q ss_pred C------------CCeEEEEEeccccc
Q psy8615 110 L------------GQSFLKPSFNTYVL 124 (128)
Q Consensus 110 ~------------~~~~l~V~~~~~~~ 124 (128)
+ .|+.|.|.|++...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 8 89999999998654
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=3.6e-17 Score=112.83 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCC-CCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 42 EGANLFIYHLPP-EFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 42 ~~~~l~V~nLp~-~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
..++|||+|||+ ++++++|+++|++||.|.+++++.++ +|||||+|.+.+ +|..|++.|||. ++|+.|+|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~-~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGN-QAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTH-HHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHH-HHHHHHHHhCCCeecCeEEEEEE
Confidence 367999999999 99999999999999999999988775 789999998887 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
.++.
T Consensus 76 a~~~ 79 (198)
T 1qm9_A 76 SKHQ 79 (198)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8754
No 189
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.68 E-value=5.5e-18 Score=114.64 Aligned_cols=81 Identities=19% Similarity=0.113 Sum_probs=70.4
Q ss_pred CCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEE
Q psy8615 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V 117 (128)
.....++|||+|||+++++++|+++|++||.+.. .++.+..+|+++|||||+|.+.+ +|.+|+ .|||. ++|+.|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~-~a~~A~-~l~g~~~~g~~l~v 85 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAE-DLEKAL-ELTGLKVFGNEIKL 85 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHH-HHHHHH-HGGGEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHH-HHHHHH-hcCCCEeCCeEEEE
Confidence 3445789999999999999999999999998766 34555567999999999997777 999999 59999 99999999
Q ss_pred Eeccc
Q psy8615 118 SFNTY 122 (128)
Q Consensus 118 ~~~~~ 122 (128)
.+.++
T Consensus 86 ~~~~~ 90 (175)
T 1fje_B 86 EKPKG 90 (175)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99875
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.68 E-value=9.2e-17 Score=110.77 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC-CeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG-QSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~-~~~l~V 117 (128)
+..++|||+|||.++++++|+++|++|| .|.++++..+. +|+|||+|.+.+ +|.+|++.|||. ++ |+.|+|
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~-~A~~A~~~l~g~~~~~g~~l~v 191 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVE-EAVQALIDLHNHDLGENHHLRV 191 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHH-HHHHHHHHHTSSCCSSCCSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHH-HHHHHHHHhcCCccCCCCeEEE
Confidence 4478999999999999999999999999 99999886542 789999997777 999999999999 88 999999
Q ss_pred Eeccccc
Q psy8615 118 SFNTYVL 124 (128)
Q Consensus 118 ~~~~~~~ 124 (128)
+|+++.+
T Consensus 192 ~~a~~~i 198 (198)
T 1qm9_A 192 SFSKSTI 198 (198)
T ss_dssp EEECCCC
T ss_pred EeecccC
Confidence 9999864
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.67 E-value=1.3e-16 Score=112.91 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC-CeEEEE
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG-QSFLKP 117 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~-~~~l~V 117 (128)
+..++|||+|||.++++++|+++|++|| .|.++++..+ .+|||||+|.+.+ +|.+|++.|||. ++ |+.|+|
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~-~A~~Ai~~l~g~~~~~g~~l~v 222 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVE-EAVQALIDLHNHDLGENHHLRV 222 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHH-HHHHHHHHHTTCBSSSSCBCEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHH-HHHHHHHHHCCCccCCCCeEEE
Confidence 3468999999999999999999999999 9999988643 3789999997777 999999999999 88 999999
Q ss_pred Eeccccc
Q psy8615 118 SFNTYVL 124 (128)
Q Consensus 118 ~~~~~~~ 124 (128)
+|+++.+
T Consensus 223 ~~a~~~i 229 (229)
T 2adc_A 223 SFSKSTI 229 (229)
T ss_dssp EECSSCC
T ss_pred EEecCCC
Confidence 9999864
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.66 E-value=2.5e-16 Score=113.43 Aligned_cols=76 Identities=20% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEE
Q psy8615 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPS 118 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~ 118 (128)
....++|||+|||+++++++|+++|++||.|.++++.. ++|||||+|.+.+ +|..|+..+||. ++|+.|+|.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~-~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRT-LAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHH-HHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHH-HHHHHHHHcCCcEECCceeEee
Confidence 34568999999999999999999999999999998853 3789999997777 999999999999 999999999
Q ss_pred eccc
Q psy8615 119 FNTY 122 (128)
Q Consensus 119 ~~~~ 122 (128)
|.++
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9875
No 193
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.5e-16 Score=98.08 Aligned_cols=78 Identities=12% Similarity=0.110 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCC-----------HHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 41 PEGANLFIYHLPPEFS-----------DADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~-----------e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
...+.|+|.||..... +++|+++|++||.|.++.+ .++ .++|||||+|.+.+ +|.+|++.|||.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~-~A~~Ai~~lng~ 87 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPE-EADYCIQTLDGR 87 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHH-HHHHHHHHSTTC
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHH-HHHHHHHHcCCC
Confidence 4467899999944332 5899999999999999955 554 37999999997777 999999999999
Q ss_pred -CCCeEEEEEecccc
Q psy8615 110 -LGQSFLKPSFNTYV 123 (128)
Q Consensus 110 -~~~~~l~V~~~~~~ 123 (128)
++|+.|+|.|.++.
T Consensus 88 ~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 88 WFGGRQITAQAWDGT 102 (112)
T ss_dssp EETTEECEEEECCSC
T ss_pred EECCcEEEEEEeCCC
Confidence 99999999998764
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.65 E-value=4.5e-16 Score=112.09 Aligned_cols=79 Identities=25% Similarity=0.252 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcC-c-CC---CeEEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAND-Y-LG---QSFLK 116 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g-~-~~---~~~l~ 116 (128)
..++|||+|||.++++++|+++|++||.|.+++++.|+ +|+++|||||+|.+.+ +|.+|++.||+ . +. +++|.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~-~A~~A~~~l~~~~~~~~~~~r~i~ 172 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKP-PARKALERCGDGAFLLTTTPRPVI 172 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHH-HHHHHHHHHHHSCEESSSSCCBCE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHH-HHHHHHHHhcCCeEEecCCCceEE
Confidence 36799999999999999999999999999999999995 7999999999997777 99999999954 3 43 89999
Q ss_pred EEeccc
Q psy8615 117 PSFNTY 122 (128)
Q Consensus 117 V~~~~~ 122 (128)
|.+.++
T Consensus 173 v~~~~~ 178 (261)
T 3sde_A 173 VEPMEQ 178 (261)
T ss_dssp EEECCC
T ss_pred Eeeccc
Confidence 998765
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.65 E-value=1e-16 Score=112.15 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=62.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHhhhcCCCce--EEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCe
Q psy8615 41 PEGANLFIYHLPPEFSDADLASMFGPFGTV--LSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQS 113 (128)
Q Consensus 41 ~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i--~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~ 113 (128)
++.++|||+|||+++++++|+++|++||.| .++++..++ |..+|||||+|++.+ +|..|+..|||+ ++|+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~-~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKS-DALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHH-HHHHHHHHHTTCEECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHH-HHHHHHHHhCCCCccCC
Confidence 346789999999999999999999999999 888888775 566799999997777 999999999998 7775
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.64 E-value=2.9e-17 Score=112.87 Aligned_cols=74 Identities=16% Similarity=0.182 Sum_probs=63.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCC-----------ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFG-----------TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY- 109 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G-----------~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~- 109 (128)
..++|||+|||+++++++|+++|++|| .|.++++ ++++|||||+|.+.+ +|..|+ .|||.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~-~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVD-ETTQAM-AFDGII 74 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSH-HHHHHG-GGTTEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHH-HHHHHH-HhcCCE
Confidence 367999999999999999999999994 4555543 566899999998888 999999 89999
Q ss_pred CCCeEEEEEecccc
Q psy8615 110 LGQSFLKPSFNTYV 123 (128)
Q Consensus 110 ~~~~~l~V~~~~~~ 123 (128)
++|+.|+|.+.+..
T Consensus 75 ~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 75 FQGQSLKIRRPHDY 88 (198)
T ss_dssp ETTEEEEEECCCCC
T ss_pred EcCceEEEeCCCCC
Confidence 99999999998653
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.64 E-value=2.7e-16 Score=114.37 Aligned_cols=80 Identities=15% Similarity=0.216 Sum_probs=68.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCC-ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEe
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFG-TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G-~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~ 119 (128)
..++|||+|||+++++++|+++|++|| .|.+++++.++. |.++|||||+|.+.+ +|..|++.|||. ++|+.|+|.|
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~-~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKE-DARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHH-HHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHH-HHHHHHHHhCCCEeCCcEEEEEE
Confidence 478999999999999999999999999 999999999887 889999999997777 999999999999 9999999999
Q ss_pred cccc
Q psy8615 120 NTYV 123 (128)
Q Consensus 120 ~~~~ 123 (128)
..+.
T Consensus 194 a~~~ 197 (292)
T 2ghp_A 194 SNPL 197 (292)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8754
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.63 E-value=3.8e-17 Score=103.17 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=62.0
Q ss_pred EcCCCCCCCHHHHHhhh------------cCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeE
Q psy8615 48 IYHLPPEFSDADLASMF------------GPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114 (128)
Q Consensus 48 V~nLp~~~~e~~l~~~f------------~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~ 114 (128)
+.+||+++++++|++.| ++||.|.++++..++. |+++|||||+|++.+ +|.+|++.|||. ++||+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~-~A~~A~~~lng~~~~Gr~ 97 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREE-DAEKAVIDLNNRWFNGQP 97 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHH-HHHHHHHHHTTCEETTEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHH-HHHHHHHHHCCCEECCEE
Confidence 45677777887777666 9999999999998875 899999999997777 999999999999 99999
Q ss_pred EEEEec
Q psy8615 115 LKPSFN 120 (128)
Q Consensus 115 l~V~~~ 120 (128)
|+|.|.
T Consensus 98 i~v~~s 103 (104)
T 1jmt_A 98 IHAELS 103 (104)
T ss_dssp CCEEEC
T ss_pred EEEEEc
Confidence 999985
No 199
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.63 E-value=8.6e-16 Score=99.05 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=68.0
Q ss_pred CCCeEEEcCC--CCCC---CHHHHHhhhcCCCceEEEEEEecCC----CCCcceEEEEEEecCHHHHHHHHHHhcCc-CC
Q psy8615 42 EGANLFIYHL--PPEF---SDADLASMFGPFGTVLSAKVFIDKQ----NNRSKCFGTIIFMRKFFILTIRFDTANDY-LG 111 (128)
Q Consensus 42 ~~~~l~V~nL--p~~~---~e~~l~~~f~~~G~i~~~~~~~~~~----tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~ 111 (128)
..+.|++.|+ |.++ -+++|++.|++||.|.+++++.++. +++++||+||+|.+.+ +|.+|++.|||. ++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e-~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS-ETHKAIQALNGRWFA 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHH-HHHHHHHHHTTCEET
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHH-HHHHHHHHHCCCEEC
Confidence 3567889998 3222 3689999999999999999999865 4678899999997777 999999999999 99
Q ss_pred CeEEEEEeccc
Q psy8615 112 QSFLKPSFNTY 122 (128)
Q Consensus 112 ~~~l~V~~~~~ 122 (128)
||.|+|.|...
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999998653
No 200
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.63 E-value=6.1e-16 Score=97.79 Aligned_cols=79 Identities=11% Similarity=0.073 Sum_probs=67.2
Q ss_pred CCeEEEcCC--CCCCC--------HHHHHhhhcCCCceEEEEEEecCCC--CCcceEEEEEEecCHHHHHHHHHHhcCc-
Q psy8615 43 GANLFIYHL--PPEFS--------DADLASMFGPFGTVLSAKVFIDKQN--NRSKCFGTIIFMRKFFILTIRFDTANDY- 109 (128)
Q Consensus 43 ~~~l~V~nL--p~~~~--------e~~l~~~f~~~G~i~~~~~~~~~~t--g~~~g~~fv~f~~~~~~a~~Ai~~l~g~- 109 (128)
.+.|.+.|+ |.+.. +++|++.|++||.|.+++++.++.+ ++++||+||+|++.+ +|.+|++.|||.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~-~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVF-DCQKAMQGLTGRK 83 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHH-HHHHHHHHHTTCE
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHH-HHHHHHHHhCCCE
Confidence 457788887 44443 3689999999999999999988764 367999999997777 999999999999
Q ss_pred CCCeEEEEEeccc
Q psy8615 110 LGQSFLKPSFNTY 122 (128)
Q Consensus 110 ~~~~~l~V~~~~~ 122 (128)
++||+|+|+|...
T Consensus 84 f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 84 FANRVVVTKYCDP 96 (105)
T ss_dssp ETTEECEEEEECH
T ss_pred eCCCEEEEEEeCH
Confidence 9999999998754
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.57 E-value=2.3e-15 Score=101.18 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=64.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCC----C-------ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPF----G-------TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY- 109 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~----G-------~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~- 109 (128)
+.++|||+|||+++++++|+++|++| | .|.++++. +++|||||+|.+.+ +|..|+ .+|+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~-~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVD-ETTQAM-AFDGII 74 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHH-HHHHHG-GGTTCE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHH-HHHHHH-HhCCcE
Confidence 35799999999999999999999999 6 66666553 45899999997777 999999 89999
Q ss_pred CCCeEEEEEecccc
Q psy8615 110 LGQSFLKPSFNTYV 123 (128)
Q Consensus 110 ~~~~~l~V~~~~~~ 123 (128)
++|+.|+|.+.+..
T Consensus 75 ~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 75 FQGQSLKIRRPHDY 88 (172)
T ss_dssp ETTEECEEECCSSC
T ss_pred ecCceeeecCCccc
Confidence 99999999997753
No 202
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.54 E-value=1.1e-14 Score=108.99 Aligned_cols=77 Identities=16% Similarity=0.036 Sum_probs=63.5
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C---CCe
Q psy8615 40 GPEGANLFIYH--LPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L---GQS 113 (128)
Q Consensus 40 ~~~~~~l~V~n--Lp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~---~~~ 113 (128)
+....+|||+| |+++++|++|+++|++||.|.++.+.. +||||||+|++.+ +|++|++.|||. + .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~-~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTE-ESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHH-HHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHH-HHHHHHHHhCCCccccccCC
Confidence 44567999999 588999999999999999999876542 4799999997766 999999999997 3 233
Q ss_pred --EEEEEecccc
Q psy8615 114 --FLKPSFNTYV 123 (128)
Q Consensus 114 --~l~V~~~~~~ 123 (128)
+|.|+|...+
T Consensus 88 ~~~ly~~~~~~~ 99 (345)
T 3tht_A 88 KITLYLNFVEKV 99 (345)
T ss_dssp EEECEEEECSSE
T ss_pred ceEEEEEEeecc
Confidence 6888887644
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.7e-14 Score=89.48 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=56.4
Q ss_pred CCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCcCCCeEEEEEeccccc
Q psy8615 53 PEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKPSFNTYVL 124 (128)
Q Consensus 53 ~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~~~~~~l~V~~~~~~~ 124 (128)
.++++++|+++|++||.|.++.++ ++++|||||+|++.+ +|+.|++.+++ +.+++|+|.|.++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~-~A~~Ai~~~~~-~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVK-AAELAVQNEVG-LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHH-HHHHHHHTCCB-CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHH-HHHHHHHhcCC-CCCCeEEEEEccCCC
Confidence 468999999999999999999987 467999999998777 99999998554 568899999988653
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.43 E-value=1.4e-13 Score=88.13 Aligned_cols=75 Identities=7% Similarity=0.032 Sum_probs=60.0
Q ss_pred CCeEEEcCC--CCCC--------CHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CC
Q psy8615 43 GANLFIYHL--PPEF--------SDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LG 111 (128)
Q Consensus 43 ~~~l~V~nL--p~~~--------~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~ 111 (128)
.+.|.+.|+ +.+. -+++|++.|++||.|.++.+..+. .+||+||+|.+.+ +|.+|++.|||. ++
T Consensus 7 s~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e-~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 7 TQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIA-AAIAAVNALHGRWFA 81 (114)
T ss_dssp CSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHH-HHHHHHHHHTTCEET
T ss_pred CcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHH-HHHHHHHHhCCCEEC
Confidence 345677776 2221 134789999999999999886543 4899999997777 999999999999 99
Q ss_pred CeEEEEEeccc
Q psy8615 112 QSFLKPSFNTY 122 (128)
Q Consensus 112 ~~~l~V~~~~~ 122 (128)
||.|+|.|...
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999753
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=3.7e-13 Score=82.38 Aligned_cols=74 Identities=19% Similarity=0.260 Sum_probs=61.1
Q ss_pred CCCCCeEEEcCCC----CCCCH----HHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-C
Q psy8615 40 GPEGANLFIYHLP----PEFSD----ADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-L 110 (128)
Q Consensus 40 ~~~~~~l~V~nLp----~~~~e----~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~ 110 (128)
+|...+|+|...+ .+..+ .+|.+.|++||.|..++++.|+ +||+|.+.+ .|.+|++ |||. +
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~-sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGS-SALNVLS-LNGKEL 73 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHH-HHHHGGG-GTTCEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChH-HHHHHHh-cCCeEe
Confidence 4556678887665 23434 5688999999999999999874 799997766 9999998 9999 9
Q ss_pred CCeEEEEEecccc
Q psy8615 111 GQSFLKPSFNTYV 123 (128)
Q Consensus 111 ~~~~l~V~~~~~~ 123 (128)
+||.|+|+++++-
T Consensus 74 ~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 74 LNRTITIALKSPS 86 (91)
T ss_dssp TTEEEEEEECCCS
T ss_pred CCeEEEEEeCCCC
Confidence 9999999999974
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=8.8e-12 Score=80.38 Aligned_cols=75 Identities=17% Similarity=0.087 Sum_probs=63.8
Q ss_pred CCCCCCeEEEcCCCCC-CCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc--Cc-CCCeE
Q psy8615 39 TGPEGANLFIYHLPPE-FSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN--DY-LGQSF 114 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~-~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~--g~-~~~~~ 114 (128)
.-+.++.|||+||+.+ +++++|+++|++||.|..|.+..+.. .|||+|.++.++|..|+..+| +. +.+..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 3466999999999999 99999999999999999999988876 599999773338999999996 44 88877
Q ss_pred EEEEe
Q psy8615 115 LKPSF 119 (128)
Q Consensus 115 l~V~~ 119 (128)
+++..
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.1e-12 Score=78.11 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=62.0
Q ss_pred CCCCCCeEEEcCCCCC-----CCH----HHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 39 TGPEGANLFIYHLPPE-----FSD----ADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 39 ~~~~~~~l~V~nLp~~-----~~e----~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
.+|...+|+|..++.+ +.+ .+|.+.|++||.|..++++.|+ +||+|.+.+ +|.+||+ |||.
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~-sAl~AI~-ldG~ 80 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSH-SALSVLD-VDGM 80 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSH-HHHHHHH-GGGS
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChH-HHHHHHh-cCCe
Confidence 3556778899877643 323 4588899999999999999885 999998887 9999998 9999
Q ss_pred -CCCeEEEEEeccc
Q psy8615 110 -LGQSFLKPSFNTY 122 (128)
Q Consensus 110 -~~~~~l~V~~~~~ 122 (128)
++||.|+|+++++
T Consensus 81 ~v~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 81 KVKGRAVKISGPSS 94 (95)
T ss_dssp EETTEEEEEECCCC
T ss_pred eeCCeEEEEeccCC
Confidence 9999999999975
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.27 E-value=1.2e-11 Score=86.84 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=57.9
Q ss_pred CCHHHHHhhhcCCCceEEEEEEecC----CCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 55 FSDADLASMFGPFGTVLSAKVFIDK----QNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 55 ~~e~~l~~~f~~~G~i~~~~~~~~~----~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
-.+++|++.|++||.|.++.+..+. .+|+++|++||+|.+.+ +|.+|++.|||. ++||+|.+.|..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~-~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIAS-ETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHH-HHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHH-HHHHHHHHhcCceECCeEEEEEEcC
Confidence 4567899999999999999998554 44589999999996666 999999999999 999999999864
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.4e-06 Score=54.73 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=61.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCC-----CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPF-----GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~-----G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
..++|-+-|||+.+++..++.+.+++ |.+.++.+..| .+-|+|+|.+.. .|.+|.-.|+|. +.|+.|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~-~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSK-FAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHH-HHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccch-hhHHHHhhcCCeeecCeEE
Confidence 36678888999999999999999999 99999887766 447999997776 999999999999 999999
Q ss_pred EEE
Q psy8615 116 KPS 118 (128)
Q Consensus 116 ~V~ 118 (128)
++.
T Consensus 93 r~g 95 (117)
T 2l9w_A 93 RSG 95 (117)
T ss_dssp EEE
T ss_pred Eec
Confidence 875
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.88 E-value=3.9e-05 Score=47.73 Aligned_cols=74 Identities=14% Similarity=0.075 Sum_probs=59.2
Q ss_pred CCeEEEcCCCCCC-CH----HHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEE
Q psy8615 43 GANLFIYHLPPEF-SD----ADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116 (128)
Q Consensus 43 ~~~l~V~nLp~~~-~e----~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~ 116 (128)
+++|+|.||+.++ .. +.++++|..|+++........-. -.-|.|++.+ +|.+|-..|++. +.|+.|+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~-~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPL-SAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTT-HHHHHHHTSTTSEETTEECE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChH-HHHHHHHHhccceecCceeE
Confidence 6789999998764 22 46789999999888866554432 4469998888 999999999999 9999999
Q ss_pred EEecccc
Q psy8615 117 PSFNTYV 123 (128)
Q Consensus 117 V~~~~~~ 123 (128)
|-|+.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.62 E-value=0.00041 Score=42.61 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=45.2
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN 107 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~ 107 (128)
...+++ +.|.++...||..+|++|| -..|+++.|. -|||.|.+++ .|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~-~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPE-QVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTC-SCCCEEEETT-------EEEEECSCHH-HHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccC-CEEEEEEcCC-------eEEEEecCHH-HHHHHHHhcc
Confidence 334556 9999999999999999999 4567788774 7999997777 8888888763
No 212
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.43 E-value=0.00062 Score=41.92 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc
Q psy8615 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN 107 (128)
Q Consensus 45 ~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~ 107 (128)
.+++ +.|.++...||..+|++|| -..|+++.|. -|||.|.+++ .|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~-~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPE-QVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEEC-HHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHH-HHHHHHHhcc
Confidence 3455 9999999999999999999 5668888775 7999998888 8999988774
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.37 E-value=0.0021 Score=39.00 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=52.7
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCC--cceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNR--SKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~--~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
++|-|++||+.++|+++.+.+++...+........+.+.+ ...-|++.|.+.+ +...=.+.++|+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e-~v~~f~~~~~g~ 68 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQE-DIILFRDRFDGY 68 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSH-HHHHHHHHHTTC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHH-HHHHHHHHhCCc
Confidence 5789999999999999999999988776666655554433 2467899997776 888899999997
No 214
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.56 E-value=0.0037 Score=40.81 Aligned_cols=35 Identities=11% Similarity=-0.024 Sum_probs=28.8
Q ss_pred EEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 72 SAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 72 ~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
.++++++.. .++|||||+|.+.+ +|++|++.+++.
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~-~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAA-TAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHH-HHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHH-hHHHHHHhhccc
Confidence 456777764 68999999997777 999999998864
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.44 E-value=0.02 Score=35.43 Aligned_cols=67 Identities=25% Similarity=0.277 Sum_probs=48.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCC-----CceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEE
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPF-----GTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFL 115 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~-----G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l 115 (128)
-+.+|.|.|||.++.++.|+-+|+.- |+|.+++.. + +-|+|+|.+.. .+++.++. ..+ |.+.+|
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~--~------~~AvItF~d~~-va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRL--G------CGGVLTFREPA-DAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEE--T------TEEEEEESSHH-HHHHHHTC-SCCBSSSSBC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEc--C------CcEEEEEcChH-HHHHHhcC-CcceecCeEE
Confidence 36789999999999999999999862 577776543 2 46799997666 66655443 223 777777
Q ss_pred EEE
Q psy8615 116 KPS 118 (128)
Q Consensus 116 ~V~ 118 (128)
.|.
T Consensus 77 sV~ 79 (104)
T 2dhx_A 77 SLR 79 (104)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.29 E-value=0.01 Score=37.70 Aligned_cols=75 Identities=11% Similarity=0.217 Sum_probs=53.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCC-eEEEEEe
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQ-SFLKPSF 119 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~-~~l~V~~ 119 (128)
..+-|.|-+.|.+.. ..+...|++||.|.+... + ....+-.+.|+++. +|++|+.. ||. +++ -.|-|..
T Consensus 23 ~~~wVtVFGFp~~~~-~~VL~~F~~~G~Iv~~~~---~---~~~NWihI~Y~s~~-~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQASA-SYILLQFAQYGNILKHVM---S---NTGNWMHIRYQSKL-QARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGGH-HHHHHHHHTTSCEEEEEE---C---SSSSEEEEEESSHH-HHHHHHTT-TTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHHH-HHHHHHHHhhCcEEEecc---C---CCCCeEEEEeCCHH-HHHHHHHh-CCeEecCCEEEEEEE
Confidence 356778888888864 455667999999998764 1 12458899998887 99999887 777 765 5555555
Q ss_pred -cccccc
Q psy8615 120 -NTYVLM 125 (128)
Q Consensus 120 -~~~~~~ 125 (128)
..+.+|
T Consensus 94 ~~d~~vi 100 (119)
T 1wwh_A 94 CIDKNVM 100 (119)
T ss_dssp CCCHHHH
T ss_pred CCCHHHH
Confidence 334444
No 217
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=95.75 E-value=0.0042 Score=40.31 Aligned_cols=39 Identities=15% Similarity=-0.117 Sum_probs=34.7
Q ss_pred CCcceEEEEEEecCHHHHHHHHHHh-cCc-CCCeEEEEEeccc
Q psy8615 82 NRSKCFGTIIFMRKFFILTIRFDTA-NDY-LGQSFLKPSFNTY 122 (128)
Q Consensus 82 g~~~g~~fv~f~~~~~~a~~Ai~~l-~g~-~~~~~l~V~~~~~ 122 (128)
...+|+++++|.+.+ +|++|++.+ ||. ++| .+++.+.+.
T Consensus 10 ~~l~G~~~ve~~~~~-~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAA-TAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHH-HHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHH-HHHHHHHHHhcCCCCCC-ceecccccC
Confidence 466999999998777 999999999 999 999 999998875
No 218
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.42 E-value=0.0072 Score=46.78 Aligned_cols=51 Identities=14% Similarity=0.278 Sum_probs=36.6
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHH
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILT 100 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~ 100 (128)
.+.|||. .|...++.+|.+.|++||+|.++..-.++ | -|+.|+|++.+ .+.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~-~~~ 103 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKE-SIG 103 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC----CCH
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHH-HHH
Confidence 3689996 89999999999999999999998655432 3 69999997766 544
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.37 E-value=0.025 Score=34.55 Aligned_cols=66 Identities=17% Similarity=0.151 Sum_probs=45.9
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCC--cceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNR--SKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~--~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
.-+|-|+.||+.+||+++.+.+++.-.+........+.+-+ ...-|++.|.+.+ +...=.+..+|+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~e-dv~~F~~~f~g~ 76 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPD-DILLFRDRFDGY 76 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHH-HHHHHHHHSTTE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHH-HHHHHHHHcCCc
Confidence 44789999999999999999888765543222222222211 1346899996665 888888899997
No 220
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.32 E-value=0.7 Score=36.05 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhc
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTAN 107 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~ 107 (128)
...++++ .|..+...+|.++|+.||. .+++++.|. .+||.|.+++ .|..+++.++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~-~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPE-QVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHH-HHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHH-HHHHHHHHHH
Confidence 3456665 8889999999999999994 455555442 7999997666 8988888885
No 221
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=87.47 E-value=0.46 Score=30.51 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=45.5
Q ss_pred CCeEEEcCCCCCCCHHHHHhhhcCCCceEE-EEEEe------------cCCCC-CcceEEEEEEecCHHHHHHHHHHhcC
Q psy8615 43 GANLFIYHLPPEFSDADLASMFGPFGTVLS-AKVFI------------DKQNN-RSKCFGTIIFMRKFFILTIRFDTAND 108 (128)
Q Consensus 43 ~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~-~~~~~------------~~~tg-~~~g~~fv~f~~~~~~a~~Ai~~l~g 108 (128)
.+.|.|-+.|.+.+...| +.|++||.|.+ ..... .+..+ ....+-.+.|+++. +|.+|+.. ||
T Consensus 7 e~~VtVFGFp~~~~~~VI-~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~-~A~rAL~~-NG 83 (132)
T 3p3d_A 7 ELAILVFGYPETMANQVI-AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPA-SAVDALLE-NG 83 (132)
T ss_dssp -CEEEEECCCGGGHHHHH-HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHH-HHHHHHTT-TT
T ss_pred ceEEEEEecCHHHHHHHH-HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHH-HHHHHHHh-CC
Confidence 345666677777665555 56999999876 11110 00001 12457789997777 99988754 55
Q ss_pred c-CCCeEEEEEec
Q psy8615 109 Y-LGQSFLKPSFN 120 (128)
Q Consensus 109 ~-~~~~~l~V~~~ 120 (128)
. ++|..|-|..=
T Consensus 84 ~ii~G~mIGV~Py 96 (132)
T 3p3d_A 84 AVFNGVLLGVIPY 96 (132)
T ss_dssp CEETTEECEEEEC
T ss_pred eEeCcEEEEEEEC
Confidence 5 88876655443
No 222
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=83.85 E-value=0.31 Score=29.89 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=0.0
Q ss_pred CCCCCeEEEcCCCCCCCHHH
Q psy8615 40 GPEGANLFIYHLPPEFSDAD 59 (128)
Q Consensus 40 ~~~~~~l~V~nLp~~~~e~~ 59 (128)
....++|||+|||+++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34467899999999999864
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=57.91 E-value=6.1 Score=22.08 Aligned_cols=58 Identities=5% Similarity=-0.034 Sum_probs=34.7
Q ss_pred CCCHHHHHhhhcCCC-----ceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc-CCCeEEEEEecc
Q psy8615 54 EFSDADLASMFGPFG-----TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121 (128)
Q Consensus 54 ~~~e~~l~~~f~~~G-----~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~-~~~~~l~V~~~~ 121 (128)
.+...+|..++..-+ .|-.+++. ..|.||+- ... .+..+++.|++. +.|+.++|...+
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~--------d~~s~v~v-~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIM--------DNASYVEI-LNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEEC--------SSCEEEEE-CTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEe--------CCcEEEEE-CHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 455566666665433 33444432 22788988 444 789999999998 999998887654
No 224
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=51.55 E-value=31 Score=22.59 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=28.3
Q ss_pred CCHHHHHhhhcCCCce---EEEEEEecCCCCCcceEEEEE
Q psy8615 55 FSDADLASMFGPFGTV---LSAKVFIDKQNNRSKCFGTII 91 (128)
Q Consensus 55 ~~e~~l~~~f~~~G~i---~~~~~~~~~~tg~~~g~~fv~ 91 (128)
.++++|+++-.+.|.+ .+..+..|..+|+.+.+||-.
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 5889999999999977 345566665469999888764
No 225
>1rlh_A Conserved hypothetical protein; structural genomics, T. acidophilum, PSI, protein structure initiative; 1.80A {Thermoplasma acidophilum} SCOP: d.256.1.1
Probab=42.67 E-value=62 Score=21.34 Aligned_cols=82 Identities=7% Similarity=-0.070 Sum_probs=47.0
Q ss_pred CCCCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHH-HHHHHHHhcCcCCCeE
Q psy8615 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFI-LTIRFDTANDYLGQSF 114 (128)
Q Consensus 36 ~~~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~-a~~Ai~~l~g~~~~~~ 114 (128)
...+.++++++.+|.-.+--|-|||.+.+-.-.+-.+..+-....+|. +.|.++..+++ -+.|++.....--|+.
T Consensus 19 v~ie~Pe~~NvIlGqsHFIKTVEDl~Ealv~svP~ikFGiAFcEASG~----~LvR~~GnD~eL~~lA~~na~~IgAGH~ 94 (173)
T 1rlh_A 19 SHMVIPAEANIIVGYSHFIKTVEDLNEIIRTHVPGSKYGIGFSEASGD----RLIRYDGNDDDLVKACIENIRRISAGHT 94 (173)
T ss_dssp EECCCCTTCEEEEEEESSCCCTHHHHHHTGGGSTTSEEEEEEECCSTT----CCEEEEESCHHHHHHHHHHHHHHCCTTE
T ss_pred EEecCCCCceEEEeeccccccHHHHHHHHhhcCCCCeEEEEEeccCCc----eEEEecCCcHHHHHHHHHHHHHhcCCcE
Confidence 346678899999999999999999998876443333333333323232 34666555522 2344444443333444
Q ss_pred EEEEecc
Q psy8615 115 LKPSFNT 121 (128)
Q Consensus 115 l~V~~~~ 121 (128)
.-|=+++
T Consensus 95 Fvi~l~~ 101 (173)
T 1rlh_A 95 FVILIRN 101 (173)
T ss_dssp EEEEEES
T ss_pred EEEEecC
Confidence 4454554
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=41.79 E-value=75 Score=21.10 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=36.9
Q ss_pred eEEEcCCCC-C--------CCHHHHHhhh--cCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHH
Q psy8615 45 NLFIYHLPP-E--------FSDADLASMF--GPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRF 103 (128)
Q Consensus 45 ~l~V~nLp~-~--------~~e~~l~~~f--~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai 103 (128)
...|-|+|. . .+...|++.| +.|.+++ ++....+. .+.|++.|.|.+.-.--..|+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~--Gh~g~aIv~F~~dw~Gf~~A~ 80 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYL--GHSGTAIVEFNKDWNGLHNGL 80 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSS--BEEEEEEEECCSSHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCC--CCceeEEEEecCChHHHHHHH
Confidence 445557775 2 4456888867 9998755 56666654 468999999976653333343
No 227
>2ekm_A Hypothetical protein ST1511; NPPSFA, national project on protein ST and functional analyses, riken structural genomics/proteomi initiative; 2.06A {Sulfolobus tokodaii}
Probab=41.62 E-value=72 Score=20.86 Aligned_cols=80 Identities=15% Similarity=-0.007 Sum_probs=47.3
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHH-HHHHHHhcCcCCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFIL-TIRFDTANDYLGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a-~~Ai~~l~g~~~~~~l~ 116 (128)
.+.++++++.+|.-.+--|-|||.+.+-.-.+-.+..+-....+| =+.|.++..+++- +.|++.....--|+..-
T Consensus 10 ie~Pe~~NvI~GqsHFIKTvEDl~Ealv~svP~ikFGiAFcEASG----~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fv 85 (162)
T 2ekm_A 10 VEIPEGTNVIIGQSHFIKTVEDLYETLASSSPHLKFGIAFCEASG----KRLIRWDGNDEELIKLAQQTALKIGAGHTFV 85 (162)
T ss_dssp ECCCTTEEEEEEECCSTTHHHHHHHHHHTTCSSCEEEEEEECCST----TCEEEEEESCHHHHHHHHHHHHHHCCTTEEE
T ss_pred ecCCCCceEEEeeccccccHHHHHHHHhhcCCCCeEEEEEeccCC----ceEEEecCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 456789999999999999999999887655443333333333323 3456776655222 34444443333344444
Q ss_pred EEecc
Q psy8615 117 PSFNT 121 (128)
Q Consensus 117 V~~~~ 121 (128)
|=+++
T Consensus 86 i~l~~ 90 (162)
T 2ekm_A 86 IYIKN 90 (162)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 55554
No 228
>1wvq_A Hypothetical protein PAE2307; phosphorylated histidine, structural genomics, unknown funct; HET: NEP; 1.45A {Pyrobaculum aerophilum} PDB: 2gl0_A* 2jb7_A*
Probab=41.62 E-value=73 Score=20.93 Aligned_cols=80 Identities=10% Similarity=-0.026 Sum_probs=47.1
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHH-HHHHHHhcCcCCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFIL-TIRFDTANDYLGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a-~~Ai~~l~g~~~~~~l~ 116 (128)
.+.++++++.+|.-.+--|-|||.+.+-.-.+-.+..+-....+| =+.|.++..+++- +.|++.....--|+..-
T Consensus 13 ie~Pe~~NvI~GqsHFIKTVEDl~Ealv~svP~ikFGiAFcEASG----~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fv 88 (167)
T 1wvq_A 13 VPIPQGTNVIIGQAHFIKTVEDLYEALVTSVPGVKFGIAFCEASG----KRLVRHEANDEELRNLAIDLCKKIAAGHVFV 88 (167)
T ss_dssp ECCCTTCEEEEEECCSTTHHHHHHHHHHTTCTTCEEEEEEECCST----TCEEEEEESCHHHHHHHHHHHHHHCCTTEEE
T ss_pred ecCCCCceEEEeeccccccHHHHHHHHhhcCCCCeEEEEEeccCC----ceEEEecCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 466789999999999999999999887654433333333333323 3356676555222 34444443333344444
Q ss_pred EEecc
Q psy8615 117 PSFNT 121 (128)
Q Consensus 117 V~~~~ 121 (128)
|=+++
T Consensus 89 i~l~~ 93 (167)
T 1wvq_A 89 IYIRN 93 (167)
T ss_dssp EEEES
T ss_pred EEecC
Confidence 54554
No 229
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=40.84 E-value=6.4 Score=25.47 Aligned_cols=28 Identities=18% Similarity=0.093 Sum_probs=15.6
Q ss_pred HHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEe
Q psy8615 58 ADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFM 93 (128)
Q Consensus 58 ~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~ 93 (128)
+++.++|...|.|+.. . ..+|||||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwf---n-----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---N-----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---E-----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEE---E-----CCCCeeEEeeC
Confidence 4455666666665532 2 23889999875
No 230
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.89 E-value=83 Score=18.72 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=43.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 42 ~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
..|-+-+-|+|..+-..++.-.....|.--.|..+ -|-+.+.|..++ +...|++.|-..
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsd-eqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSD-EQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHH-HHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCCh-HHHHHHHHHHhc
Confidence 46777788999999888777666666765555433 346789998777 888899887543
No 231
>1vgg_A Conserved hypothetical protein TT1634; thermus thermophilus HB8, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.75A {Thermus thermophilus} SCOP: d.256.1.1
Probab=29.07 E-value=80 Score=20.61 Aligned_cols=80 Identities=8% Similarity=-0.060 Sum_probs=44.6
Q ss_pred CCCCCCCeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEecCCCCCcceEEEEEEecCHHHH-HHHHHHhcCcCCCeEEE
Q psy8615 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFIL-TIRFDTANDYLGQSFLK 116 (128)
Q Consensus 38 ~~~~~~~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~~~tg~~~g~~fv~f~~~~~~a-~~Ai~~l~g~~~~~~l~ 116 (128)
.+.++++++.+|.-.+--|-|||.+.+-.-.+-.+..+-....+| =+.|.++..+++- +.|++.....--|+..-
T Consensus 8 ie~Pe~~NvI~GqsHFIKTVEDl~Ealv~svP~ikFGiAFcEASG----~~LvR~~GnD~eL~~lA~~na~~IgAGH~Fv 83 (161)
T 1vgg_A 8 IEKPENLNVILGQAHFIKTVEDLHEALVTAVPGIRFGLAFSEASG----KRLVRRSGTDEALVELAVKNLLNLACGHVFL 83 (161)
T ss_dssp CCCCTTCEEEEEECCSTTHHHHHHHHHHHHSTTCCEEEEEECCST----TCEEEEEESCHHHHHHHHHHHHHHCCTTEEE
T ss_pred ecCCCCceEEEeeccccccHHHHHHHHhhcCCCCeEEEEEeccCC----ceEEEecCCcHHHHHHHHHHHHHhcCCcEEE
Confidence 456789999999999999999999877532222222222222222 3346666555222 34444443333344545
Q ss_pred EEecc
Q psy8615 117 PSFNT 121 (128)
Q Consensus 117 V~~~~ 121 (128)
|=+++
T Consensus 84 i~l~~ 88 (161)
T 1vgg_A 84 IVLGE 88 (161)
T ss_dssp EEECT
T ss_pred EEecC
Confidence 55554
No 232
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=27.13 E-value=39 Score=19.69 Aligned_cols=25 Identities=8% Similarity=-0.211 Sum_probs=20.0
Q ss_pred cceEEEEEEecCHHHHHHHHHHhcCc
Q psy8615 84 SKCFGTIIFMRKFFILTIRFDTANDY 109 (128)
Q Consensus 84 ~~g~~fv~f~~~~~~a~~Ai~~l~g~ 109 (128)
.+||-||+++..+ +...++....|.
T Consensus 49 fPGYVfVe~~~~~-~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKG-DVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHH-HHHHHHTTCTTE
T ss_pred cCCEEEEEEecch-hHHHHHHCCCCc
Confidence 6999999996555 777888887774
No 233
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=23.79 E-value=44 Score=23.53 Aligned_cols=33 Identities=12% Similarity=0.306 Sum_probs=25.3
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEe
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI 77 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~ 77 (128)
..+.|+|+|+.++..-+..++.. +.+.+..++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 45689999999999999998876 5565554443
No 234
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=22.96 E-value=65 Score=17.63 Aligned_cols=23 Identities=4% Similarity=0.283 Sum_probs=17.4
Q ss_pred EEEEEEecCCCCCcceEEEEEEec
Q psy8615 71 LSAKVFIDKQNNRSKCFGTIIFMR 94 (128)
Q Consensus 71 ~~~~~~~~~~tg~~~g~~fv~f~~ 94 (128)
+.+++++.+. .-+.|++.+.|++
T Consensus 20 R~arlllnrR-ps~~G~~wiKyED 42 (62)
T 1igq_A 20 RPARLILNRR-PPAEGYAWLKYED 42 (62)
T ss_dssp EEEEECTTBC-CSSTTEEEEEETT
T ss_pred hhhhhhhccC-CCcCceEEEEEec
Confidence 5677777765 5568999999964
No 235
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.91 E-value=1.2e+02 Score=17.63 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=18.5
Q ss_pred ceEEEEEEecCCCCCcceEEEEEEec
Q psy8615 69 TVLSAKVFIDKQNNRSKCFGTIIFMR 94 (128)
Q Consensus 69 ~i~~~~~~~~~~tg~~~g~~fv~f~~ 94 (128)
.|.++++..-...|+.++|+-|.|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 46667665544458889999999954
No 236
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1 PDB: 2l6q_A 2l6r_A
Probab=21.91 E-value=1e+02 Score=17.10 Aligned_cols=23 Identities=4% Similarity=-0.064 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCcCCCeEEEEEeccc
Q psy8615 98 ILTIRFDTANDYLGQSFLKPSFNTY 122 (128)
Q Consensus 98 ~a~~Ai~~l~g~~~~~~l~V~~~~~ 122 (128)
.+++|++.|- .|.+.+.|+|+..
T Consensus 9 ~a~~A~~~L~--tG~~~vsV~ydgr 31 (68)
T 1hyw_A 9 AARAALHDLM--TGKRVATVQKDGR 31 (68)
T ss_dssp HHHHHHHHHT--TSCCCEEEECSSC
T ss_pred HHHHHHHHHh--cCCceEEEEECCE
Confidence 4555555544 7788888888754
No 237
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=21.12 E-value=22 Score=25.13 Aligned_cols=35 Identities=17% Similarity=0.179 Sum_probs=26.5
Q ss_pred CeEEEcCCCCCCCHHHHHhhhcCCCceEEEEEEec
Q psy8615 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFID 78 (128)
Q Consensus 44 ~~l~V~nLp~~~~e~~l~~~f~~~G~i~~~~~~~~ 78 (128)
....|+|||+.++..-|..++.....+....++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 35679999999999999999986555666555443
No 238
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=20.79 E-value=38 Score=19.04 Aligned_cols=10 Identities=40% Similarity=0.278 Sum_probs=7.9
Q ss_pred ceEEEEEEec
Q psy8615 85 KCFGTIIFMR 94 (128)
Q Consensus 85 ~g~~fv~f~~ 94 (128)
+|||||+-++
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 8999998643
No 239
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=20.25 E-value=87 Score=18.28 Aligned_cols=8 Identities=38% Similarity=0.492 Sum_probs=6.7
Q ss_pred ceEEEEEE
Q psy8615 85 KCFGTIIF 92 (128)
Q Consensus 85 ~g~~fv~f 92 (128)
+|||||+-
T Consensus 20 KGfGFI~~ 27 (90)
T 3ulj_A 20 MGFGFISM 27 (90)
T ss_dssp TTEEEEEE
T ss_pred CCeEEeEe
Confidence 89999963
Done!