Your job contains 1 sequence.
>psy8615
MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL
ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFLKPSFN
TYVLMNVI
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8615
(128 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 256 7.6e-21 1
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 246 1.1e-19 1
UNIPROTKB|F1SID9 - symbol:CELF1 "Uncharacterized protein"... 231 2.5e-19 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 236 4.7e-19 1
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m... 234 5.9e-19 1
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m... 234 6.0e-19 1
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein... 233 7.7e-19 1
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m... 233 7.7e-19 1
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m... 233 7.7e-19 1
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe... 233 7.7e-19 1
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m... 233 7.7e-19 1
UNIPROTKB|F1RUN0 - symbol:CELF2 "Uncharacterized protein"... 226 8.3e-19 1
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 233 8.9e-19 1
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m... 233 8.9e-19 1
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 233 8.9e-19 1
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 200 6.0e-18 2
UNIPROTKB|E1BIM7 - symbol:LOC100851458 "Uncharacterized p... 221 8.2e-18 1
UNIPROTKB|B4DIB6 - symbol:CELF2 "cDNA FLJ51739, highly si... 221 8.7e-18 1
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 221 1.6e-17 1
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 221 1.6e-17 1
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 221 1.6e-17 1
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 221 1.6e-17 1
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 221 1.6e-17 1
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 221 1.7e-17 1
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 221 1.8e-17 1
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 221 1.8e-17 1
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 221 1.8e-17 1
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 221 1.9e-17 1
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 220 3.1e-17 1
UNIPROTKB|F1P5J4 - symbol:BRUNOL6 "Uncharacterized protei... 206 2.4e-16 1
UNIPROTKB|K7EJD7 - symbol:CELF4 "CUGBP Elav-like family m... 202 2.9e-16 1
FB|FBgn0264001 - symbol:bru-3 "bruno-3" species:7227 "Dro... 206 4.7e-16 1
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"... 202 7.6e-16 1
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 206 1.0e-15 1
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 203 1.3e-15 1
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 203 1.3e-15 1
UNIPROTKB|B4DQL3 - symbol:CELF3 "CUGBP Elav-like family m... 195 1.6e-15 1
UNIPROTKB|B3KWE6 - symbol:BRUNOL6 "cDNA FLJ42868 fis, clo... 198 1.7e-15 1
ZFIN|ZDB-GENE-120215-101 - symbol:si:dkey-205h23.2 "si:dk... 194 2.0e-15 1
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 199 3.3e-15 1
RGD|1307630 - symbol:Celf4 "CUGBP, Elav-like family membe... 196 3.3e-15 1
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab... 200 3.4e-15 1
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 198 3.6e-15 1
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 198 4.4e-15 1
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 198 4.4e-15 1
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 198 4.9e-15 1
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 198 4.9e-15 1
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 198 4.9e-15 1
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 197 5.5e-15 1
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 196 5.8e-15 1
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 198 5.8e-15 1
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 195 7.2e-15 1
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 196 8.2e-15 1
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 196 8.2e-15 1
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 196 8.4e-15 1
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 195 9.4e-15 1
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 195 9.6e-15 1
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 195 9.6e-15 1
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 195 9.6e-15 1
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 195 9.6e-15 1
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 197 9.7e-15 1
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 194 1.1e-14 1
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 195 1.3e-14 1
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 193 1.4e-14 1
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 187 8.1e-14 1
UNIPROTKB|F1SAI1 - symbol:CELF4 "Uncharacterized protein"... 174 1.1e-12 1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 159 8.6e-11 1
FB|FBgn0010263 - symbol:Rbp9 "RNA-binding protein 9" spec... 125 3.5e-10 2
ZFIN|ZDB-GENE-980526-76 - symbol:elavl3 "ELAV (embryonic ... 147 9.3e-10 1
UNIPROTKB|F1PVV1 - symbol:ELAVL3 "Uncharacterized protein... 146 1.3e-09 1
UNIPROTKB|Q14576 - symbol:ELAVL3 "ELAV-like protein 3" sp... 146 1.3e-09 1
MGI|MGI:109157 - symbol:Elavl3 "ELAV (embryonic lethal, a... 146 1.3e-09 1
RGD|628892 - symbol:Elavl3 "ELAV (embryonic lethal, abnor... 146 1.3e-09 1
UNIPROTKB|F1N4V6 - symbol:ELAVL3 "Uncharacterized protein... 146 1.3e-09 1
DICTYBASE|DDB_G0270634 - symbol:DDB_G0270634 "putative sp... 144 2.1e-09 1
FB|FBgn0086675 - symbol:fne "found in neurons" species:72... 143 2.5e-09 1
UNIPROTKB|Q91903 - symbol:elavl2 "ELAV-like protein 2" sp... 138 1.1e-08 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 137 1.2e-08 1
RGD|628611 - symbol:Elavl2 "ELAV (embryonic lethal, abnor... 137 1.2e-08 1
UNIPROTKB|Q8CH84 - symbol:Elavl2 "ELAV-like protein 2" sp... 137 1.2e-08 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 137 1.4e-08 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 137 1.4e-08 1
FB|FBgn0260400 - symbol:elav "embryonic lethal abnormal v... 137 2.0e-08 1
UNIPROTKB|A2VDK5 - symbol:ELAVL4 "Uncharacterized protein... 134 2.6e-08 1
UNIPROTKB|J9PAL3 - symbol:ELAVL4 "Uncharacterized protein... 134 2.6e-08 1
UNIPROTKB|F1SA16 - symbol:ELAVL3 "Uncharacterized protein... 134 2.6e-08 1
UNIPROTKB|F1NLH0 - symbol:ELAVL4 "Uncharacterized protein... 134 2.6e-08 1
UNIPROTKB|B1APY9 - symbol:ELAVL4 "cDNA FLJ50619, highly s... 134 2.6e-08 1
UNIPROTKB|F1P856 - symbol:ELAVL4 "Uncharacterized protein... 134 2.8e-08 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 131 5.3e-08 1
UNIPROTKB|K7ENR2 - symbol:CELF4 "CUGBP Elav-like family m... 124 5.3e-08 1
UNIPROTKB|E1BTJ0 - symbol:RBMS3 "Uncharacterized protein"... 132 5.8e-08 1
UNIPROTKB|F1SNK9 - symbol:ELAVL2 "Uncharacterized protein... 131 6.4e-08 1
UNIPROTKB|C9J9B2 - symbol:RBMS3 "RNA-binding motif, singl... 127 7.0e-08 1
UNIPROTKB|F1P311 - symbol:CELF1 "CUGBP Elav-like family m... 128 9.3e-08 1
ZFIN|ZDB-GENE-040704-9 - symbol:elavl2 "ELAV (embryonic l... 129 1.0e-07 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 128 1.0e-07 1
UNIPROTKB|E7EPF2 - symbol:RBMS1 "RNA-binding motif, singl... 121 1.1e-07 1
ZFIN|ZDB-GENE-990415-246 - symbol:elavl4 "ELAV (embryonic... 128 1.4e-07 1
UNIPROTKB|E2RA90 - symbol:RBMS3 "Uncharacterized protein"... 128 1.6e-07 1
WARNING: Descriptions of 166 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 256 (95.2 bits), Expect = 7.6e-21, P = 7.6e-21
Identities = 51/92 (55%), Positives = 62/92 (67%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
M L A +S + L+ +A S AA ++GKQ+ GPEG NLFIYHLP EF+D DL
Sbjct: 683 MSTAAGLPQFGSASALSTSPLASVALSAAAAAAAGKQIEGPEGCNLFIYHLPQEFTDTDL 742
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
AS F PFG V+SAKVFIDKQ + SKCFG + F
Sbjct: 743 ASTFLPFGNVISAKVFIDKQTSLSKCFGFVSF 774
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 246 (91.7 bits), Expect = 1.1e-19, P = 1.1e-19
Identities = 52/88 (59%), Positives = 61/88 (69%)
Query: 5 VTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMF 64
+T A GA + P S L + AA G +GKQ+ GP+G+NLFIYHLP EF D DLAS F
Sbjct: 772 LTNGAAYGAASQ-PVTTSALQA--AAAGVTGKQIEGPDGSNLFIYHLPQEFIDTDLASTF 828
Query: 65 GPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
PFG VLSAKVFIDKQ N SKCFG + +
Sbjct: 829 LPFGNVLSAKVFIDKQTNLSKCFGFVSY 856
>UNIPROTKB|F1SID9 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0043484 GO:GO:0042835 GeneTree:ENSGT00560000076837
EMBL:CU856103 Ensembl:ENSSSCT00000014453 OMA:INQPITQ Uniprot:F1SID9
Length = 344
Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
Identities = 45/76 (59%), Positives = 52/76 (68%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 225 AAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 284
Query: 73 AKVFIDKQNNRSKCFG 88
AKVFIDKQ N SKCFG
Sbjct: 285 AKVFIDKQTNLSKCFG 300
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 236 (88.1 bits), Expect = 4.7e-19, P = 4.7e-19
Identities = 51/92 (55%), Positives = 59/92 (64%)
Query: 5 VTLAAMTGAGTMSPTALSGLAS----SNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+T AA +G + AL L S S V ++G Q GPEGANLFIYHLP EF D DL
Sbjct: 407 LTQAAYSGIQQYAAAALPSLYSQSLLSQQNVSAAGSQKEGPEGANLFIYHLPQEFGDQDL 466
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
MF PFG V+SAKVFIDKQ N SKCFG + +
Sbjct: 467 LQMFMPFGNVISAKVFIDKQTNLSKCFGFVSY 498
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 234 (87.4 bits), Expect = 5.9e-19, P = 5.9e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 369 AAAALPTLYNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 428
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 429 AKVFIDKQTNLSKCFGFVSY 448
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 234 (87.4 bits), Expect = 6.0e-19, P = 6.0e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 373 AAAALPTLYNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 432
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 433 AKVFIDKQTNLSKCFGFVSY 452
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 233 (87.1 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 370 AAAALPTLYNQNLLAQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 429
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 430 AKVFIDKQTNLSKCFGFVSY 449
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 233 (87.1 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 370 AAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 429
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 430 AKVFIDKQTNLSKCFGFVSY 449
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 233 (87.1 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 370 AAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 429
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 430 AKVFIDKQTNLSKCFGFVSY 449
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 233 (87.1 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 371 AAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 430
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 431 AKVFIDKQTNLSKCFGFVSY 450
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 233 (87.1 bits), Expect = 7.7e-19, P = 7.7e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 371 AAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 430
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 431 AKVFIDKQTNLSKCFGFVSY 450
>UNIPROTKB|F1RUN0 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 EMBL:CU896684
Ensembl:ENSSSCT00000012171 OMA:PANNENR Uniprot:F1RUN0
Length = 236
Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
Identities = 47/86 (54%), Positives = 56/86 (65%)
Query: 9 AMTGAGTMSPTALSGLASSNAAV--GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGP 66
A +G + AL L S + G++G Q GPEGANLFIYHLP EF D D+ MF P
Sbjct: 114 AYSGIQQYAAAALPTLYSQSLLQQQGAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMP 173
Query: 67 FGTVLSAKVFIDKQNNRSKCFGTIIF 92
FG V+SAKVFIDKQ N SKCFG + +
Sbjct: 174 FGNVISAKVFIDKQTNLSKCFGFVSY 199
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 233 (87.1 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 397 AAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 456
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 457 AKVFIDKQTNLSKCFGFVSY 476
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 233 (87.1 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 397 AAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 456
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 457 AKVFIDKQTNLSKCFGFVSY 476
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 233 (87.1 bits), Expect = 8.9e-19, P = 8.9e-19
Identities = 45/80 (56%), Positives = 54/80 (67%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL MF PFG V+S
Sbjct: 398 AAAALPTLYNQNLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVS 457
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
AKVFIDKQ N SKCFG + +
Sbjct: 458 AKVFIDKQTNLSKCFGFVSY 477
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 200 (75.5 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 34/54 (62%), Positives = 44/54 (81%)
Query: 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
TGPEG N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 352 TGPEGCNVFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSF 405
Score = 45 (20.9 bits), Expect = 6.0e-18, Sum P(2) = 6.0e-18
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 2 QNLVTLAAMTG-AGTMSPTA---LSGLASSNAAVGSSGKQLTGPEGAN 45
Q LV A+ A +SP A + +A+ NA+ G +T P GAN
Sbjct: 210 QELVQQQALVAQAQYLSPAASMQIQQMAALNAS-GIIATPITPPSGAN 256
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 221 (82.9 bits), Expect = 8.2e-18, P = 8.2e-18
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 283 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 339
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 340 SAKVFIDKQTNLSKCFGFVSY 360
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 221 (82.9 bits), Expect = 8.7e-18, P = 8.7e-18
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 289 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 345
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 346 SAKVFIDKQTNLSKCFGFVSY 366
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 370 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 426
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 427 SAKVFIDKQTNLSKCFGFVSY 447
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 370 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 426
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 427 SAKVFIDKQTNLSKCFGFVSY 447
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 374 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 430
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 431 SAKVFIDKQTNLSKCFGFVSY 451
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 374 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 430
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 431 SAKVFIDKQTNLSKCFGFVSY 451
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 221 (82.9 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 380 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 436
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 437 SAKVFIDKQTNLSKCFGFVSY 457
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 221 (82.9 bits), Expect = 1.7e-17, P = 1.7e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 384 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 440
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 441 SAKVFIDKQTNLSKCFGFVSY 461
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 394 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 450
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 451 SAKVFIDKQTNLSKCFGFVSY 471
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 394 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 450
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 451 SAKVFIDKQTNLSKCFGFVSY 471
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 221 (82.9 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 394 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 450
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 451 SAKVFIDKQTNLSKCFGFVSY 471
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 221 (82.9 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 407 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVI 463
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 464 SAKVFIDKQTNLSKCFGFVSY 484
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 220 (82.5 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 47/81 (58%), Positives = 52/81 (64%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ MF PFG V+
Sbjct: 471 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVV 527
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKVFIDKQ N SKCFG + +
Sbjct: 528 SAKVFIDKQTNLSKCFGFVSY 548
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 206 (77.6 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 37/57 (64%), Positives = 44/57 (77%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 261 QQREGPEGCNLFIYHLPQEFGDAELTQMFLPFGNVISAKVFVDRATNQSKCFGFVSF 317
>UNIPROTKB|K7EJD7 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589386 Uniprot:K7EJD7
Length = 185
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L MF PFG V+S+KVF+D+ N+SKCFG + F
Sbjct: 106 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSF 162
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 206 (77.6 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 37/58 (63%), Positives = 45/58 (77%)
Query: 35 GKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
G ++GPEG NLFIYHLP EF DA+L MF PFG V+S+KVFID+ N+SKCFG + F
Sbjct: 328 GCSISGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFIDRATNQSKCFGFVSF 385
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 202 (76.2 bits), Expect = 7.6e-16, P = 7.6e-16
Identities = 36/57 (63%), Positives = 44/57 (77%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L MF PFG V+S+KVF+D+ N+SKCFG + F
Sbjct: 268 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSF 324
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 44/92 (47%), Positives = 56/92 (60%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
MQ LA + G + A + A VG+ + GP+GANLFIYHLP +F D+DL
Sbjct: 465 MQQYALLANLQATGGVGVQATTSAAQM---VGNG--DVKGPDGANLFIYHLPQDFGDSDL 519
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ F PFG +LSAKVFIDK N SKCFG + +
Sbjct: 520 INTFAPFGGILSAKVFIDKVTNLSKCFGFVSY 551
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 203 (76.5 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 42/92 (45%), Positives = 55/92 (59%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
MQ+ T A G +SP A +Q GPEG N+FIYHLP EF+D+++
Sbjct: 335 MQHY-TAAYPAAYGLVSPAFTQPPAILTQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEI 393
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 394 LQMFLPFGNVISAKVFVDRATNQSKCFGFVSF 425
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 203 (76.5 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 42/92 (45%), Positives = 55/92 (59%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
MQ+ T A G +SP A +Q GPEG N+FIYHLP EF+D+++
Sbjct: 335 MQHY-TAAYPAAYGLVSPAFTQPPAILQQQPPQQQQQREGPEGCNIFIYHLPQEFTDSEI 393
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 394 LQMFLPFGNVISAKVFVDRATNQSKCFGFVSF 425
>UNIPROTKB|B4DQL3 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AL589765 UniGene:Hs.26047 HGNC:HGNC:11967
EMBL:AK298852 IPI:IPI00909704 SMR:B4DQL3 STRING:B4DQL3
Ensembl:ENST00000392706 UCSC:uc010pdh.2 Uniprot:B4DQL3
Length = 260
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GP+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 167 QQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 223
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 198 (74.8 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L F PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 249 QQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 305
>ZFIN|ZDB-GENE-120215-101 [details] [associations]
symbol:si:dkey-205h23.2 "si:dkey-205h23.2"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
ZFIN:ZDB-GENE-120215-101 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 EMBL:CU929433
Ensembl:ENSDART00000151364 Uniprot:I3IS08
Length = 188
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 35/52 (67%), Positives = 41/52 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCF 87
+Q GPEG NLFIYHLP EF DA+L MF PFG V+SAKVF+D+ N+SKCF
Sbjct: 137 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISAKVFVDRATNQSKCF 188
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 199 (75.1 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 34/57 (59%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 359 QQREGPEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSF 415
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 196 (74.1 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 35/57 (61%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NL IYHLP EF DA+L MF PFG V+S+KVF+D+ N+SKCFG + F
Sbjct: 262 QQREGPEGCNLLIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSF 318
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 200 (75.5 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+++ GP+G NLFIYHLP EF DA+L MF PFG ++SAKVF+D+ N+SKCFG + +
Sbjct: 421 REVLGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKVFVDRATNQSKCFGFVSY 477
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 198 (74.8 bits), Expect = 3.6e-15, P = 3.6e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L F PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 334 QQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 390
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 198 (74.8 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L F PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 367 QQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 423
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 198 (74.8 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L F PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 367 QQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 423
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 198 (74.8 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L F PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 388 QQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 444
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 198 (74.8 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L F PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 389 QQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 445
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 198 (74.8 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 36/57 (63%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF DA+L F PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 389 QQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGFVSF 445
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 197 (74.4 bits), Expect = 5.5e-15, P = 5.5e-15
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
+Q GPEG NLFIYHLP EF DA+L MF PFG V+S+KVF+D+ N+SKCFG
Sbjct: 401 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGNVISSKVFVDRATNQSKCFG 453
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 196 (74.1 bits), Expect = 5.8e-15, P = 5.8e-15
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF D +L MF PFG ++S+KVF+D+ N+SKCFG + F
Sbjct: 327 QQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSF 383
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 198 (74.8 bits), Expect = 5.8e-15, P = 5.8e-15
Identities = 35/57 (61%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF D +L MF PFG V+S+KVF+D+ N+SKCFG + F
Sbjct: 427 QQREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGFVSF 483
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 195 (73.7 bits), Expect = 7.2e-15, P = 7.2e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GP+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 322 QQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 378
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 196 (74.1 bits), Expect = 8.2e-15, P = 8.2e-15
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF D +L MF PFG ++S+KVF+D+ N+SKCFG + F
Sbjct: 392 QQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSF 448
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 196 (74.1 bits), Expect = 8.2e-15, P = 8.2e-15
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF D +L MF PFG ++S+KVF+D+ N+SKCFG + F
Sbjct: 392 QQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSF 448
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 196 (74.1 bits), Expect = 8.4e-15, P = 8.4e-15
Identities = 34/57 (59%), Positives = 43/57 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFIYHLP EF D +L MF PFG ++S+KVF+D+ N+SKCFG + F
Sbjct: 396 QQREGPEGCNLFIYHLPQEFGDTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSF 452
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 195 (73.7 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GP+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 368 QQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 424
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 195 (73.7 bits), Expect = 9.6e-15, P = 9.6e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GP+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 372 QQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 428
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 195 (73.7 bits), Expect = 9.6e-15, P = 9.6e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GP+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 372 QQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 428
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 195 (73.7 bits), Expect = 9.6e-15, P = 9.6e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GP+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 372 QQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 428
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 195 (73.7 bits), Expect = 9.6e-15, P = 9.6e-15
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GP+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 373 QQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 429
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 197 (74.4 bits), Expect = 9.7e-15, P = 9.7e-15
Identities = 40/84 (47%), Positives = 52/84 (61%)
Query: 9 AMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFG 68
A+ A T++P S ++ GPEG NLFIYHLP EF D +L MF PFG
Sbjct: 477 AIYPATTLTPIGQSLPQPPQVIQQQQQREGEGPEGCNLFIYHLPQEFGDNELMQMFLPFG 536
Query: 69 TVLSAKVFIDKQNNRSKCFGTIIF 92
TV+S+KVF+D+ N+SKCFG + F
Sbjct: 537 TVISSKVFMDRATNQSKCFGFVSF 560
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 194 (73.4 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 39/74 (52%), Positives = 51/74 (68%)
Query: 19 TALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFID 78
T G++++ ++ SS Q GP GANLFIY++P EF D +LA+ F PFG VLSAKVF+D
Sbjct: 315 TVSPGISNNGTSIPSS-LQTEGPAGANLFIYNIPREFEDQELAATFQPFGKVLSAKVFVD 373
Query: 79 KQNNRSKCFGTIIF 92
K SKCFG I +
Sbjct: 374 KATGISKCFGFISY 387
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 195 (73.7 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 33/57 (57%), Positives = 45/57 (78%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GP+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 446 QQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 502
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 193 (73.0 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 17 SPTALSGLASSNAAVG-SSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
SP ++S S+ +G SS Q GPEGANLFIY++P EF D +LA+ F FG VLSAKV
Sbjct: 321 SPGSISPGMSTPLGIGLSSVVQTEGPEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKV 380
Query: 76 FIDKQNNRSKCFGTIIF 92
F+DK SKCFG + +
Sbjct: 381 FVDKATGVSKCFGFVSY 397
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 187 (70.9 bits), Expect = 8.1e-14, P = 8.1e-14
Identities = 32/57 (56%), Positives = 44/57 (77%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q P+G N+FIYHLP EF+D+++ MF PFG V+SAKVF+D+ N+SKCFG + F
Sbjct: 401 QQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSF 457
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 174 (66.3 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+Q GPEG NLFI HLP EF DA+L MF PFG +S+K F+D+ N+SKCFG + F
Sbjct: 279 QQREGPEGCNLFICHLPQEFGDAELMQMFLPFGNGISSKAFVDR-TNQSKCFGFVSF 334
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 159 (61.0 bits), Expect = 8.6e-11, P = 8.6e-11
Identities = 32/81 (39%), Positives = 48/81 (59%)
Query: 14 GTMSPTALSGLASSNAA--VGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
G M +G+ N +G+ Q GP+G+NLF+Y++P FSD DL +F +G V+
Sbjct: 371 GPMGNGMNNGMGGMNQGGPMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVV 430
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
SAKV++DK SK FG + +
Sbjct: 431 SAKVYVDKNTGVSKGFGFVSY 451
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 125 (49.1 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 29/77 (37%), Positives = 42/77 (54%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDT 105
+F+Y+L P+ + L +FGPFG V S KV D Q+N+ K FG + M + + +
Sbjct: 363 IFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFG-FVTMTNYEEAVLAIQS 421
Query: 106 ANDY-LGQSFLKPSFNT 121
N Y LG L+ SF T
Sbjct: 422 LNGYTLGNRVLQVSFKT 438
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00046
Identities = 25/84 (29%), Positives = 44/84 (52%)
Query: 20 ALSGLASSNAAVGSSGKQLTGP--EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI 77
AL+GL N + S + + +GANL++ LP + +DL S+F P+G ++++++
Sbjct: 170 ALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSPYGKIITSRILC 229
Query: 78 DKQNNR-----SKCFGTIIFMRKF 96
D SK G I F ++F
Sbjct: 230 DNITGEHAAGLSKGVGFIRFDQRF 253
Score = 85 (35.0 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 26 SSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSK 85
++NA ++ P+ NL + +LP S ++ S+F FG V S K+ DK +S
Sbjct: 93 NNNATANNNNNNEPDPK-TNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSL 151
Query: 86 CFGTIIFMRK 95
+G + ++++
Sbjct: 152 GYGFVNYVKQ 161
Score = 49 (22.3 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 3 NLVTLAAMTGAGTMSPT-ALSGLASS-NAAVGSS 34
N+ A T GT + T A +G S+ NAAVG +
Sbjct: 39 NVTNSQAQTNGGTTATTTAAAGAGSTTNAAVGQA 72
Score = 40 (19.1 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 6 TLAAMTGAGTMSPTALSGLASSNAA 30
T A GAG+ + A+ ++NAA
Sbjct: 54 TTTAAAGAGSTTNAAVGQATANNAA 78
Score = 34 (17.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 18 PTALSGLASSNAAVGSSGKQLTGPEGAN 45
P+ G + + GS+G GP AN
Sbjct: 15 PSGAGGASGVGSTTGSAG----GPATAN 38
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 147 (56.8 bits), Expect = 9.3e-10, P = 9.3e-10
Identities = 43/124 (34%), Positives = 60/124 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGAN--LFIYHLPPEFSDA 58
+ NL L A G SP + + S +G LTGP GA +F+Y+L PE ++
Sbjct: 239 LDNL--LNASYGVKRFSPITIDSMTSL------AGVNLTGPTGAGWCIFVYNLSPEADES 290
Query: 59 DLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKP 117
L +FGPFG V + KV D N+ K FG + M + + + N Y LG L+
Sbjct: 291 VLWQLFGPFGAVTNVKVIRDFTTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQV 349
Query: 118 SFNT 121
SF T
Sbjct: 350 SFKT 353
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 41/108 (37%), Positives = 57/108 (52%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGAN--LFIYHLPPEFSDADLASMFGPFGTVLSAK 74
SP A+ G+ S A VG SG G GA +F+Y+L PE ++ L +FGPFG V + K
Sbjct: 260 SPIAIDGM-SGLAGVGLSG----GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Query: 75 VFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
V D N+ K FG + M + + + N Y LG+ L+ SF T
Sbjct: 315 VIRDFTTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 361
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 41/108 (37%), Positives = 57/108 (52%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGAN--LFIYHLPPEFSDADLASMFGPFGTVLSAK 74
SP A+ G+ S A VG SG G GA +F+Y+L PE ++ L +FGPFG V + K
Sbjct: 260 SPIAIDGM-SGLAGVGLSG----GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Query: 75 VFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
V D N+ K FG + M + + + N Y LG+ L+ SF T
Sbjct: 315 VIRDFTTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 361
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 41/108 (37%), Positives = 57/108 (52%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGAN--LFIYHLPPEFSDADLASMFGPFGTVLSAK 74
SP A+ G+ S A VG SG G GA +F+Y+L PE ++ L +FGPFG V + K
Sbjct: 260 SPIAIDGM-SGLAGVGLSG----GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Query: 75 VFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
V D N+ K FG + M + + + N Y LG+ L+ SF T
Sbjct: 315 VIRDFTTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 361
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 41/108 (37%), Positives = 57/108 (52%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGAN--LFIYHLPPEFSDADLASMFGPFGTVLSAK 74
SP A+ G+ S A VG SG G GA +F+Y+L PE ++ L +FGPFG V + K
Sbjct: 260 SPIAIDGM-SGLAGVGLSG----GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 314
Query: 75 VFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
V D N+ K FG + M + + + N Y LG+ L+ SF T
Sbjct: 315 VIRDFTTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 361
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 146 (56.5 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 41/108 (37%), Positives = 57/108 (52%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGAN--LFIYHLPPEFSDADLASMFGPFGTVLSAK 74
SP A+ G+ S A VG SG G GA +F+Y+L PE ++ L +FGPFG V + K
Sbjct: 261 SPIAIDGM-SGLAGVGLSG----GAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVK 315
Query: 75 VFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
V D N+ K FG + M + + + N Y LG+ L+ SF T
Sbjct: 316 VIRDFTTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 362
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 144 (55.7 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
E +LFIY+LP + D +L +F P+G V+S+KVFIDK +SKCFG + +
Sbjct: 285 ESNDLFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSY 335
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 143 (55.4 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 39/114 (34%), Positives = 59/114 (51%)
Query: 9 AMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFG 68
A+ AG + + L+G +N+ + G +TG G +F+Y+L PE + L +FGPFG
Sbjct: 241 ALPSAGRIRYSPLAGDLLANSIL--PGNAMTG-SGWCIFVYNLAPETEENVLWQLFGPFG 297
Query: 69 TVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
V S KV D Q ++ K FG + M + + + N Y LG L+ SF T
Sbjct: 298 AVQSVKVIRDLQTSKCKGFG-FVTMTNYDEAVVAIQSLNGYTLGNRVLQVSFKT 350
Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
Identities = 24/74 (32%), Positives = 38/74 (51%)
Query: 21 LSGLASSNAAVGSSGKQLTGP--EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFID 78
L+GL N + S + + +GANL++ LP S DL MF FG ++++++ D
Sbjct: 105 LNGLRLQNKVIKVSYARPSSESIKGANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCD 164
Query: 79 KQNNRSKCFGTIIF 92
+ SK G I F
Sbjct: 165 NISGLSKGVGFIRF 178
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 138 (53.6 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 40/122 (32%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A SP A+ G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 267 LDNLLNMAYGGIKSRFSPMAIDGMTSL-AGINFPGHAGTG---WCIFVYNLAPDADESIL 322
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 323 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 381
Query: 120 NT 121
T
Sbjct: 382 KT 383
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 40/122 (32%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 239 LDNLLNMAY--GVKRFSPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESIL 292
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 293 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Query: 120 NT 121
T
Sbjct: 352 KT 353
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 40/122 (32%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 239 LDNLLNMAY--GVKRFSPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESIL 292
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 293 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Query: 120 NT 121
T
Sbjct: 352 KT 353
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 137 (53.3 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 40/122 (32%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 239 LDNLLNMAY--GVKRFSPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESIL 292
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 293 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 351
Query: 120 NT 121
T
Sbjct: 352 KT 353
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 40/122 (32%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 267 LDNLLNMAY--GVKRFSPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESIL 320
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 321 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 379
Query: 120 NT 121
T
Sbjct: 380 KT 381
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 137 (53.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 40/122 (32%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 268 LDNLLNMAY--GVKRFSPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESIL 321
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 322 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 380
Query: 120 NT 121
T
Sbjct: 381 KT 382
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 137 (53.3 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 40/112 (35%), Positives = 57/112 (50%)
Query: 13 AGTMSPTAL-SGLASSNAAVGSSGKQLTGPEGAN-LFIYHLPPEFSDADLASMFGPFGTV 70
AG M L +GL ++ AA + +GP GA +FIY+L PE +A L +FGPFG V
Sbjct: 372 AGDMLDVMLPNGLGAAAAAATTLA---SGPGGAYPIFIYNLAPETEEAALWQLFGPFGAV 428
Query: 71 LSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
S K+ D N+ K +G + M + + N Y +G L+ SF T
Sbjct: 429 QSVKIVKDPTTNQCKGYG-FVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKT 479
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 40/122 (32%), Positives = 60/122 (49%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S VG + TG G +F+Y+L P+ ++ L
Sbjct: 246 LDNLLNMAY--GVKRFSPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVL 299
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
+FGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 300 WQLFGPFGAVNNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
Query: 120 NT 121
T
Sbjct: 359 KT 360
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 40/122 (32%), Positives = 60/122 (49%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S VG + TG G +F+Y+L P+ ++ L
Sbjct: 246 LDNLLNMAY--GVKRFSPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVL 299
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
+FGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 300 WQLFGPFGAVNNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 358
Query: 120 NT 121
T
Sbjct: 359 KT 360
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 43/127 (33%), Positives = 62/127 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGP-EGAN----LFIYHLPPEF 55
+ NL+ +A G + SP +L S A G SG GP G +F+Y+L PE
Sbjct: 239 LDNLLNMAY--GVKS-SPLSLIARFSPIAIDGMSGLAGVGPVRGCGGGWCIFVYNLSPEA 295
Query: 56 SDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSF 114
++ L +FGPFG V + KV D N+ K FG + M + + + N Y LG+
Sbjct: 296 DESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGERV 354
Query: 115 LKPSFNT 121
L+ SF T
Sbjct: 355 LQVSFKT 361
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 40/122 (32%), Positives = 60/122 (49%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S VG + TG G +F+Y+L P+ ++ L
Sbjct: 251 LDNLLNMAY--GVKRFSPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVL 304
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
+FGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 305 WQLFGPFGAVNNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363
Query: 120 NT 121
T
Sbjct: 364 KT 365
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 134 (52.2 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 40/122 (32%), Positives = 60/122 (49%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S VG + TG G +F+Y+L P+ ++ L
Sbjct: 251 LDNLLNMAY--GVKRFSPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVL 304
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
+FGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 305 WQLFGPFGAVNNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 363
Query: 120 NT 121
T
Sbjct: 364 KT 365
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 134 (52.2 bits), Expect = 2.8e-08, P = 2.8e-08
Identities = 40/122 (32%), Positives = 60/122 (49%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S VG + TG G +F+Y+L P+ ++ L
Sbjct: 262 LDNLLNMAY--GVKRFSPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVL 315
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
+FGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 316 WQLFGPFGAVNNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 374
Query: 120 NT 121
T
Sbjct: 375 KT 376
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 131 (51.2 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 39/122 (31%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A + SP + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 239 LDNLLNMAYGVKS-RFSPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESIL 293
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 294 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 352
Query: 120 NT 121
T
Sbjct: 353 KT 354
>UNIPROTKB|K7ENR2 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961
EMBL:AC090386 EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587657
Uniprot:K7ENR2
Length = 137
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 23/33 (69%), Positives = 25/33 (75%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFG 68
+Q GPEG NLFIYHLP EF DA+L MF PFG
Sbjct: 105 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFG 137
>UNIPROTKB|E1BTJ0 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AADN02001158 EMBL:AADN02001159 EMBL:AADN02001160
EMBL:AADN02001161 EMBL:AADN02001162 IPI:IPI00583817
Ensembl:ENSGALT00000018654 Uniprot:E1BTJ0
Length = 433
Score = 132 (51.5 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 29/77 (37%), Positives = 47/77 (61%)
Query: 16 MSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
M+P + S +S+N++ SSG+QL+ NL+I LPP +D DL + P+G ++S K
Sbjct: 35 MAPPSPSTNSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKA 91
Query: 76 FIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 92 ILDKNTNQCKGYGFVDF 108
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 131 (51.2 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 39/122 (31%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A + SP + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 279 LDNLLNMAYGVKS-RFSPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESIL 333
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 334 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 392
Query: 120 NT 121
T
Sbjct: 393 KT 394
>UNIPROTKB|C9J9B2 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068 EMBL:AC092795
EMBL:AC092796 EMBL:AC097633 EMBL:AC098650 EMBL:AC099048
HGNC:HGNC:13427 ChiTaRS:RBMS3 IPI:IPI00924610
ProteinModelPortal:C9J9B2 SMR:C9J9B2 STRING:C9J9B2
Ensembl:ENST00000445033 ArrayExpress:C9J9B2 Bgee:C9J9B2
Uniprot:C9J9B2
Length = 264
Score = 127 (49.8 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 18 PTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI 77
P+ + +S+N++ SSG+QL+ NL+I LPP +D DL + P+G ++S K +
Sbjct: 38 PSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAIL 94
Query: 78 DKQNNRSKCFGTIIF 92
DK N+ K +G + F
Sbjct: 95 DKNTNQCKGYGFVDF 109
>UNIPROTKB|F1P311 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
Length = 328
Score = 128 (50.1 bits), Expect = 9.3e-08, P = 9.3e-08
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASM 63
A PT + + ++G++G Q GPEGANLFIYHLP EF D DL M
Sbjct: 278 AAAALPTLYNQSLLTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQM 328
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 129 (50.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 39/122 (31%), Positives = 57/122 (46%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + G+ S A + TG +F+Y+L P+ + L
Sbjct: 268 LDNLLNMAY--GVKRFSPMTIDGVTSL-AGINLPAHAGTG---WCIFVYNLAPDADENVL 321
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 322 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAVAIASLNGYRLGDRVLQVSF 380
Query: 120 NT 121
T
Sbjct: 381 KT 382
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 128 (50.1 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 36/106 (33%), Positives = 52/106 (49%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S A + G TG +F+Y+L P+ ++ L MFGPFG V + KV
Sbjct: 240 SPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESILWQMFGPFGAVTNVKVI 295
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 296 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 340
>UNIPROTKB|E7EPF2 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC092153 EMBL:AC104598
EMBL:AC131754 HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105
IPI:IPI01011353 ProteinModelPortal:E7EPF2 SMR:E7EPF2
Ensembl:ENST00000428519 ArrayExpress:E7EPF2 Bgee:E7EPF2
Uniprot:E7EPF2
Length = 128
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 16 MSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
M+P + S +S+N + SS NL+I LPP +D DL + P+G ++S K
Sbjct: 1 MAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKA 60
Query: 76 FIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 61 ILDKTTNKCKGYGFVDF 77
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 128 (50.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 39/122 (31%), Positives = 59/122 (48%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A G SP + + S VG + TG G +F+Y+L P+ ++ L
Sbjct: 288 LDNLLNMAY--GVKRFSPITIDSMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVL 341
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
+FGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 342 WQLFGPFGAVNNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 400
Query: 120 NT 121
T
Sbjct: 401 KT 402
>UNIPROTKB|E2RA90 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:AAEX03013537 EMBL:AAEX03013538 EMBL:AAEX03013539
Ensembl:ENSCAFT00000008829 Uniprot:E2RA90
Length = 437
Score = 128 (50.1 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 18 PTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI 77
P+ + +S+N++ SSG+QL+ NL+I LPP +D DL + P+G ++S K +
Sbjct: 38 PSPSTNSSSNNSSSNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAIL 94
Query: 78 DKQNNRSKCFGTIIF 92
DK N+ K +G + F
Sbjct: 95 DKNTNQCKGYGFVDF 109
>UNIPROTKB|E1C5J3 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 OMA:THVQTAA EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 IPI:IPI00680409 ProteinModelPortal:E1C5J3
Ensembl:ENSGALT00000033119 ArrayExpress:E1C5J3 Uniprot:E1C5J3
Length = 395
Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 2 QNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLA 61
Q L+ ++ A M+P + S +S+N + SS NL+I LPP +D DL
Sbjct: 12 QYLLAKQSIVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRALPPNTTDQDLV 71
Query: 62 SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ P+G ++S K +DK N+ K +G + F
Sbjct: 72 KLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 102
>UNIPROTKB|J3QT21 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC012262 EMBL:AC021068 EMBL:AC092795 EMBL:AC092796
EMBL:AC097633 EMBL:AC098650 EMBL:AC099048 HGNC:HGNC:13427
ChiTaRS:RBMS3 ProteinModelPortal:J3QT21 Ensembl:ENST00000396583
Uniprot:J3QT21
Length = 434
Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 18 PTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI 77
P+ + +S+N++ SSG+QL+ NL+I LPP +D DL + P+G ++S K +
Sbjct: 38 PSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAIL 94
Query: 78 DKQNNRSKCFGTIIF 92
DK N+ K +G + F
Sbjct: 95 DKNTNQCKGYGFVDF 109
>UNIPROTKB|C9JIJ9 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0043231 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000008467 EMBL:AC012262 EMBL:AC021068
EMBL:AC092795 EMBL:AC092796 EMBL:AC097633 EMBL:AC098650
EMBL:AC099048 HGNC:HGNC:13427 OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3
IPI:IPI00927842 ProteinModelPortal:C9JIJ9 SMR:C9JIJ9 STRING:C9JIJ9
PRIDE:C9JIJ9 Ensembl:ENST00000434693 ArrayExpress:C9JIJ9
Bgee:C9JIJ9 Uniprot:C9JIJ9
Length = 436
Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 18 PTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI 77
P+ + +S+N++ SSG+QL+ NL+I LPP +D DL + P+G ++S K +
Sbjct: 37 PSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAIL 93
Query: 78 DKQNNRSKCFGTIIF 92
DK N+ K +G + F
Sbjct: 94 DKNTNQCKGYGFVDF 108
>UNIPROTKB|E1BPT6 [details] [associations]
symbol:RBMS3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043231 "intracellular membrane-bounded organelle"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0043231 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
OMA:QQMTVET EMBL:DAAA02053512 EMBL:DAAA02053513 EMBL:DAAA02053514
EMBL:DAAA02053515 EMBL:DAAA02053516 EMBL:DAAA02053517
EMBL:DAAA02053518 EMBL:DAAA02053519 EMBL:DAAA02053520
EMBL:DAAA02053521 EMBL:DAAA02053522 EMBL:DAAA02053523
IPI:IPI00711139 Ensembl:ENSBTAT00000061510 Uniprot:E1BPT6
Length = 437
Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 16 MSPTALSGLASSN-AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAK 74
M+P + S +SSN ++ SSG+QL+ NL+I LPP +D DL + P+G ++S K
Sbjct: 35 MAPPSPSTNSSSNHSSSNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTK 91
Query: 75 VFIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 92 AILDKNTNQCKGYGFVDF 109
>UNIPROTKB|Q6XE24 [details] [associations]
symbol:RBMS3 "RNA-binding motif,
single-stranded-interacting protein 3" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
EMBL:CH471055 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 HSSP:Q15434 EMBL:AF023259
EMBL:AY236871 EMBL:AY236872 EMBL:AK292789 EMBL:AC012262
EMBL:AC021068 EMBL:AC092795 EMBL:AC092796 EMBL:AC097633
EMBL:AC098650 EMBL:AC099048 EMBL:BC117315 EMBL:BC143521
IPI:IPI00298424 IPI:IPI00472404 IPI:IPI00827856 IPI:IPI00985081
RefSeq:NP_001003792.1 RefSeq:NP_001003793.1 RefSeq:NP_001171182.1
RefSeq:NP_001171183.1 RefSeq:NP_055298.2 UniGene:Hs.221436
ProteinModelPortal:Q6XE24 SMR:Q6XE24 STRING:Q6XE24
PhosphoSite:Q6XE24 DMDM:74762382 PaxDb:Q6XE24 PRIDE:Q6XE24
Ensembl:ENST00000273139 Ensembl:ENST00000383766
Ensembl:ENST00000383767 Ensembl:ENST00000452462
Ensembl:ENST00000456853 GeneID:27303 KEGG:hsa:27303 UCSC:uc003cek.3
UCSC:uc003cel.3 UCSC:uc003cem.3 UCSC:uc010hfq.3 CTD:27303
GeneCards:GC03P029298 HGNC:HGNC:13427 HPA:HPA034719 MIM:605786
neXtProt:NX_Q6XE24 PharmGKB:PA34276 InParanoid:Q6XE24 OMA:QQMTVET
OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 GenomeRNAi:27303 NextBio:50293
ArrayExpress:Q6XE24 Bgee:Q6XE24 CleanEx:HS_RBMS3
Genevestigator:Q6XE24 Uniprot:Q6XE24
Length = 437
Score = 127 (49.8 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 18 PTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI 77
P+ + +S+N++ SSG+QL+ NL+I LPP +D DL + P+G ++S K +
Sbjct: 38 PSPSTNSSSNNSSNNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAIL 94
Query: 78 DKQNNRSKCFGTIIF 92
DK N+ K +G + F
Sbjct: 95 DKNTNQCKGYGFVDF 109
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 126 (49.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 38/122 (31%), Positives = 58/122 (47%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A + P + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 267 LDNLLNMAYGVKS-RFPPMTIDGMTSL-AGINIPGHAGTG---WCIFVYNLAPDADESIL 321
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSF 119
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+ SF
Sbjct: 322 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 380
Query: 120 NT 121
T
Sbjct: 381 KT 382
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 125 (49.1 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S VG + TG G +F+Y+L P+ ++ L +FGPFG V + KV
Sbjct: 245 SPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVI 300
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 301 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 345
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 127 (49.8 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
+Q GPEG NLFIYHLP EF DA+L MF PFG V
Sbjct: 403 QQREGPEGCNLFIYHLPQEFGDAELTQMFLPFGFV 437
>UNIPROTKB|Q0V9L3 [details] [associations]
symbol:celf4 "CUGBP Elav-like family member 4" species:8364
"Xenopus (Silurana) tropicalis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 CTD:56853 EMBL:BC121490 RefSeq:NP_001072378.1
UniGene:Str.35078 ProteinModelPortal:Q0V9L3 SMR:Q0V9L3
GeneID:779831 KEGG:xtr:779831 Xenbase:XB-GENE-5873699
Uniprot:Q0V9L3
Length = 424
Score = 126 (49.4 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
+Q GPEG NLFIYHLP EF DA+L MF PFG V
Sbjct: 351 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 385
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S VG + TG G +F+Y+L P+ ++ L +FGPFG V + KV
Sbjct: 267 SPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVI 322
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 323 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 367
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 125 (49.1 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S VG + TG G +F+Y+L P+ ++ L +FGPFG V + KV
Sbjct: 267 SPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVI 322
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 323 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 367
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S VG + TG G +F+Y+L P+ ++ L +FGPFG V + KV
Sbjct: 274 SPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVI 329
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 330 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 374
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S VG + TG G +F+Y+L P+ ++ L +FGPFG V + KV
Sbjct: 274 SPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVI 329
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 330 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 374
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S VG + TG G +F+Y+L P+ ++ L +FGPFG V + KV
Sbjct: 278 SPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVI 333
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 334 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 378
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S VG + TG G +F+Y+L P+ ++ L +FGPFG V + KV
Sbjct: 279 SPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVI 334
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 335 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 379
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 125 (49.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 36/106 (33%), Positives = 53/106 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
SP + G+ S VG + TG G +F+Y+L P+ ++ L +FGPFG V + KV
Sbjct: 279 SPITIDGMTS---LVGMNIPGHTGT-GWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVI 334
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 335 RDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 379
>UNIPROTKB|Q3ZBP3 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:BC103186 IPI:IPI00696485
RefSeq:NP_001030438.1 UniGene:Bt.44980 UniGene:Bt.91245 HSSP:P29558
ProteinModelPortal:Q3ZBP3 SMR:Q3ZBP3 PRIDE:Q3ZBP3
Ensembl:ENSBTAT00000006826 GeneID:526135 KEGG:bta:526135 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
InParanoid:Q3ZBP3 OMA:THVQTAA OrthoDB:EOG469QV2 NextBio:20874311
Uniprot:Q3ZBP3
Length = 403
Score = 125 (49.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 2 QNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLA 61
Q L ++ A M+P + S +S+N + SS NL+I LPP +D DL
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLV 79
Query: 62 SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ P+G ++S K +DK N+ K +G + F
Sbjct: 80 KLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110
>MGI|MGI:1861774 [details] [associations]
symbol:Rbms1 "RNA binding motif, single stranded interacting
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1861774 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 ChiTaRS:RBMS1 EMBL:AB026582 EMBL:AB026569
EMBL:AK135280 EMBL:AK147109 EMBL:AL928581 EMBL:AL929012
EMBL:BC016501 EMBL:BC056609 EMBL:BC057866 IPI:IPI00127323
IPI:IPI00462043 IPI:IPI00990210 RefSeq:NP_001135403.1
RefSeq:NP_064692.2 UniGene:Mm.259667 UniGene:Mm.482338
ProteinModelPortal:Q91W59 SMR:Q91W59 PhosphoSite:Q91W59
PaxDb:Q91W59 PRIDE:Q91W59 Ensembl:ENSMUST00000028347
Ensembl:ENSMUST00000112509 GeneID:56878 KEGG:mmu:56878
UCSC:uc008jus.2 UCSC:uc008jut.2 InParanoid:Q91W59 NextBio:313461
Bgee:Q91W59 Genevestigator:Q91W59 GermOnline:ENSMUSG00000026970
Uniprot:Q91W59
Length = 403
Score = 125 (49.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 2 QNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLA 61
Q L ++ A M+P + S +S+N + SS NL+I LPP +D DL
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLV 79
Query: 62 SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ P+G ++S K +DK N+ K +G + F
Sbjct: 80 KLCQPYGKIVSTKAILDKATNKCKGYGFVDF 110
>RGD|1307777 [details] [associations]
symbol:Rbms1 "RNA binding motif, single stranded interacting
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1307777 GO:GO:0005634 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
HSSP:P29558 CTD:5937 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620
RefSeq:NP_001012184.1 UniGene:Rn.98522 ProteinModelPortal:Q5PQP1
SMR:Q5PQP1 PRIDE:Q5PQP1 Ensembl:ENSRNOT00000011682 GeneID:362138
KEGG:rno:362138 UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 125 (49.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 2 QNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLA 61
Q L ++ A M+P + S +S+N + SS NL+I LPP +D DL
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLV 79
Query: 62 SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ P+G ++S K +DK N+ K +G + F
Sbjct: 80 KLCQPYGKIVSTKAILDKATNKCKGYGFVDF 110
>UNIPROTKB|Q5PQP1 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0005634
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 HSSP:P29558 CTD:5937
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OMA:THVQTAA EMBL:BC087094 IPI:IPI00373620 RefSeq:NP_001012184.1
UniGene:Rn.98522 ProteinModelPortal:Q5PQP1 SMR:Q5PQP1 PRIDE:Q5PQP1
Ensembl:ENSRNOT00000011682 GeneID:362138 KEGG:rno:362138
UCSC:RGD:1307777 InParanoid:Q5PQP1 NextBio:678788
ArrayExpress:Q5PQP1 Genevestigator:Q5PQP1 Uniprot:Q5PQP1
Length = 403
Score = 125 (49.1 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 2 QNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLA 61
Q L ++ A M+P + S +S+N + SS NL+I LPP +D DL
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLV 79
Query: 62 SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ P+G ++S K +DK N+ K +G + F
Sbjct: 80 KLCQPYGKIVSTKAILDKATNKCKGYGFVDF 110
>UNIPROTKB|P29558 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=NAS] [GO:0006260 "DNA
replication" evidence=NAS] [GO:0005634 "nucleus" evidence=NAS]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0003697
"single-stranded DNA binding" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006396 "RNA processing" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006260 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
EMBL:AC092153 CTD:5937 eggNOG:NOG320163 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 EMBL:D28482 EMBL:X77494 EMBL:AC104598
EMBL:AC131754 EMBL:BC012992 EMBL:BC012993 EMBL:BC018951 EMBL:X64652
IPI:IPI00033611 IPI:IPI00929296 IPI:IPI00941661 PIR:I38042
PIR:S19873 PIR:S47659 PIR:S53612 RefSeq:NP_002888.1
RefSeq:NP_058520.1 UniGene:Hs.470412 PDB:1X5O PDBsum:1X5O
ProteinModelPortal:P29558 SMR:P29558 STRING:P29558
PhosphoSite:P29558 DMDM:55977783 PaxDb:P29558 PRIDE:P29558
DNASU:5937 Ensembl:ENST00000348849 GeneID:5937 KEGG:hsa:5937
UCSC:uc002ubn.3 UCSC:uc002ubo.3 GeneCards:GC02M161128
HGNC:HGNC:9907 HPA:HPA047943 MIM:602310 neXtProt:NX_P29558
PharmGKB:PA34273 InParanoid:P29558 PhylomeDB:P29558 ChiTaRS:RBMS1
EvolutionaryTrace:P29558 GenomeRNAi:5937 NextBio:23144
ArrayExpress:P29558 Bgee:P29558 CleanEx:HS_RBMS1
Genevestigator:P29558 GermOnline:ENSG00000153250 Uniprot:P29558
Length = 406
Score = 125 (49.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 2 QNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLA 61
Q L ++ A M+P + S +S+N + SS NL+I LPP +D DL
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLV 79
Query: 62 SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ P+G ++S K +DK N+ K +G + F
Sbjct: 80 KLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
+Q GPEG NLFIYHLP EF DA+L MF PFG V
Sbjct: 401 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 435
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 126 (49.4 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
+Q GPEG NLFIYHLP EF DA+L MF PFG V
Sbjct: 402 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 436
>UNIPROTKB|D4A6H0 [details] [associations]
symbol:Rbms1 "RNA-binding motif,
single-stranded-interacting protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1307777 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567364
ProteinModelPortal:D4A6H0 Ensembl:ENSRNOT00000047180
ArrayExpress:D4A6H0 Uniprot:D4A6H0
Length = 411
Score = 125 (49.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 2 QNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLA 61
Q L ++ A M+P + S +S+N + SS NL+I LPP +D DL
Sbjct: 12 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLV 71
Query: 62 SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ P+G ++S K +DK N+ K +G + F
Sbjct: 72 KLCQPYGKIVSTKAILDKATNKCKGYGFVDF 102
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 126 (49.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
+Q GPEG NLFIYHLP EF DA+L MF PFG V
Sbjct: 413 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 447
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 126 (49.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 24/35 (68%), Positives = 26/35 (74%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
+Q GPEG NLFIYHLP EF DA+L MF PFG V
Sbjct: 413 QQREGPEGCNLFIYHLPQEFGDAELMQMFLPFGFV 447
>UNIPROTKB|B4DN88 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 HOGENOM:HOG000008467 HOVERGEN:HBG053108 OMA:THVQTAA
EMBL:AC104598 EMBL:AC131754 UniGene:Hs.470412 HGNC:HGNC:9907
ChiTaRS:RBMS1 EMBL:AC133105 EMBL:AK297812 IPI:IPI00102991
SMR:B4DN88 STRING:B4DN88 Ensembl:ENST00000392753 UCSC:uc002ubi.4
Uniprot:B4DN88
Length = 419
Score = 125 (49.1 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 2 QNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLA 61
Q L ++ A M+P + S +S+N + SS NL+I LPP +D DL
Sbjct: 20 QYLQAKQSLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLV 79
Query: 62 SMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ P+G ++S K +DK N+ K +G + F
Sbjct: 80 KLCQPYGKIVSTKAILDKTTNKCKGYGFVDF 110
>UNIPROTKB|E2RM13 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:AAEX03017702
EMBL:AAEX03017703 Ensembl:ENSCAFT00000015804 Uniprot:E2RM13
Length = 404
Score = 123 (48.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 9 AMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFG 68
++ A M+P + S +S+N + SS NL+I LPP +D DL + P+G
Sbjct: 25 SLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYG 84
Query: 69 TVLSAKVFIDKQNNRSKCFGTIIF 92
++S K +DK N+ K +G + F
Sbjct: 85 KIVSTKAILDKTTNKCKGYGFVDF 108
>UNIPROTKB|E2RMT9 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:AAEX03017702 EMBL:AAEX03017703 Ensembl:ENSCAFT00000015788
NextBio:20854045 Uniprot:E2RMT9
Length = 420
Score = 123 (48.4 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 27/84 (32%), Positives = 44/84 (52%)
Query: 9 AMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFG 68
++ A M+P + S +S+N + SS NL+I LPP +D DL + P+G
Sbjct: 28 SLVPAHPMAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYG 87
Query: 69 TVLSAKVFIDKQNNRSKCFGTIIF 92
++S K +DK N+ K +G + F
Sbjct: 88 KIVSTKAILDKTTNKCKGYGFVDF 111
>RGD|1588240 [details] [associations]
symbol:Rbms3 "RNA binding motif, single stranded interacting
protein 3" species:10116 "Rattus norvegicus" [GO:0043231
"intracellular membrane-bounded organelle" evidence=ISO]
REFSEQ:XM_002727143 Ncbi:XP_002727189
Length = 430
Score = 123 (48.4 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 26 SSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSK 85
S+N++ SSG+QL+ NL+I LPP +D DL + P+G ++S K +DK N+ K
Sbjct: 41 STNSSSNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 97
Query: 86 CFGTIIF 92
+G + F
Sbjct: 98 GYGFVDF 104
>MGI|MGI:2444477 [details] [associations]
symbol:Rbms3 "RNA binding motif, single stranded interacting
protein" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:2444477 GO:GO:0043231 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOVERGEN:HBG053108 HSSP:Q15434 CTD:27303
OMA:QQMTVET OrthoDB:EOG4KKZ35 ChiTaRS:RBMS3 EMBL:AK030478
EMBL:AK030609 EMBL:AK032938 EMBL:AK033005 EMBL:AK041098
EMBL:AK046197 EMBL:AK052196 EMBL:BC108402 EMBL:BC117841
IPI:IPI00346515 IPI:IPI00474248 IPI:IPI00828372 IPI:IPI00828512
IPI:IPI00828705 IPI:IPI00828757 RefSeq:NP_001165592.1
RefSeq:NP_001165593.1 RefSeq:NP_001165594.1 RefSeq:NP_001165595.1
RefSeq:NP_001165597.1 RefSeq:NP_848775.2 UniGene:Mm.326411
ProteinModelPortal:Q8BWL5 SMR:Q8BWL5 PhosphoSite:Q8BWL5
PaxDb:Q8BWL5 PRIDE:Q8BWL5 Ensembl:ENSMUST00000044901
Ensembl:ENSMUST00000068962 Ensembl:ENSMUST00000111772
Ensembl:ENSMUST00000111773 Ensembl:ENSMUST00000164018
Ensembl:ENSMUST00000174868 GeneID:207181 KEGG:mmu:207181
UCSC:uc009ryv.2 UCSC:uc009ryw.2 UCSC:uc009ryx.2 UCSC:uc009ryy.2
UCSC:uc009ryz.2 UCSC:uc009rza.2 InParanoid:Q8BWL5 NextBio:371875
Bgee:Q8BWL5 Genevestigator:Q8BWL5 Uniprot:Q8BWL5
Length = 431
Score = 123 (48.4 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 26 SSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSK 85
S+N++ SSG+QL+ NL+I LPP +D DL + P+G ++S K +DK N+ K
Sbjct: 41 STNSSSNSSGEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 97
Query: 86 CFGTIIF 92
+G + F
Sbjct: 98 GYGFVDF 104
>UNIPROTKB|E7ETU5 [details] [associations]
symbol:RBMS1 "RNA-binding motif,
single-stranded-interacting protein 1" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC092153 EMBL:AC104598 EMBL:AC131754 IPI:IPI00033611
HGNC:HGNC:9907 ChiTaRS:RBMS1 EMBL:AC133105 SMR:E7ETU5
Ensembl:ENST00000409075 Ensembl:ENST00000409289
Ensembl:ENST00000409972 Uniprot:E7ETU5
Length = 370
Score = 121 (47.7 bits), Expect = 6.8e-07, P = 6.8e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 16 MSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
M+P + S +S+N + SS NL+I LPP +D DL + P+G ++S K
Sbjct: 1 MAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPHTTDQDLVKLCQPYGKIVSTKA 60
Query: 76 FIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 61 ILDKTTNKCKGYGFVDF 77
>UNIPROTKB|O73664 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:P26378 GeneTree:ENSGT00630000089747 CTD:5937 eggNOG:NOG320163
HOGENOM:HOG000008467 HOVERGEN:HBG053108 EMBL:AADN02058669
EMBL:AADN02058670 EMBL:AADN02058671 EMBL:AADN02058672
EMBL:AADN02058673 EMBL:AB009975 IPI:IPI00586219 RefSeq:NP_990355.1
UniGene:Gga.4540 SMR:O73664 Ensembl:ENSGALT00000018146
GeneID:395880 KEGG:gga:395880 NextBio:20815947 Uniprot:O73664
Length = 373
Score = 121 (47.7 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 16 MSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
M+P + S +S+N + SS NL+I LPP +D DL + P+G ++S K
Sbjct: 1 MAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRALPPNTTDQDLVKLCQPYGKIVSTKA 60
Query: 76 FIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 61 ILDKTTNKCKGYGFVDF 77
>UNIPROTKB|F1RPR6 [details] [associations]
symbol:RBMS1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 OMA:THVQTAA
EMBL:CU914319 Ensembl:ENSSSCT00000017300 Uniprot:F1RPR6
Length = 375
Score = 121 (47.7 bits), Expect = 7.0e-07, P = 7.0e-07
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 16 MSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
M+P + S +S+N + SS NL+I LPP +D DL + P+G ++S K
Sbjct: 1 MAPPSPSTTSSNNNSSSSSNSGWDQLSKTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKA 60
Query: 76 FIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 61 ILDKTTNKCKGYGFVDF 77
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 126 (49.4 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 37/121 (30%), Positives = 55/121 (45%)
Query: 3 NLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGA-------NLFIYHLPPEF 55
NL T T T + T L+ L S N + +S +T G NLF++HLPP
Sbjct: 724 NLTTTTTTTT--TTNTTNLTNLESLNP-LSASSSSITSNSGGGKHTNDTNLFVFHLPPFV 780
Query: 56 SDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDYLGQSFL 115
D+ L +F FG + S +V DK +K +G + F + L + + +G FL
Sbjct: 781 DDSYLFQLFSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEMNGFRIGSKFL 840
Query: 116 K 116
K
Sbjct: 841 K 841
Score = 116 (45.9 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 26 SSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSK 85
++N +V + +L + N+F+ HLP EF+D DL ++F +G VLS+KV ID + N S
Sbjct: 92 NNNNSVNNKELELERDQ-TNVFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGN-SY 149
Query: 86 CFGTIIF 92
+G + F
Sbjct: 150 GYGFVRF 156
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 119 (46.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 33/93 (35%), Positives = 46/93 (49%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G G +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 230 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 288
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + ++ + N Y LG L+ SF T
Sbjct: 289 FVTMTNYEEASMAIASLNGYRLGDKILQVSFKT 321
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G G +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 230 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 288
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + + + N Y LG L+ SF T
Sbjct: 289 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKT 321
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G G +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 230 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 288
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + + + N Y LG L+ SF T
Sbjct: 289 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKT 321
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G G +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 230 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 288
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + + + N Y LG L+ SF T
Sbjct: 289 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKT 321
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G G +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 230 GISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 288
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + + + N Y LG L+ SF T
Sbjct: 289 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKT 321
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G G +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 230 GISGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 288
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + + + N Y LG L+ SF T
Sbjct: 289 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKT 321
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G G +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 238 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 296
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + + + N Y LG L+ SF T
Sbjct: 297 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKT 329
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 32/93 (34%), Positives = 45/93 (48%)
Query: 32 GSSGKQLTGPEGAN--LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G + +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 244 GMSGVNVPGNSSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 302
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + + + N Y LG L+ SF T
Sbjct: 303 FVTMTHYEEAAMAIASLNGYRLGDKILQVSFKT 335
>UNIPROTKB|F6W1U9 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090681 HGNC:HGNC:9909
EMBL:AC097104 IPI:IPI01022449 ProteinModelPortal:F6W1U9 SMR:F6W1U9
Ensembl:ENST00000545007 ArrayExpress:F6W1U9 Bgee:F6W1U9
Uniprot:F6W1U9
Length = 147
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A M+P + S ++ N++ GS+G QL+ NL+I L P +D DL + P+G ++
Sbjct: 28 AQQMAPPSPSN-STPNSSSGSNGNDQLSK---TNLYIRGLQPGTTDQDLVKLCQPYGKIV 83
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
S K +DK N+ K +G + F
Sbjct: 84 STKAILDKTTNKCKGYGFVDF 104
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 118 (46.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/93 (35%), Positives = 45/93 (48%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G G +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 257 GLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG- 315
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
+ M + + + N Y LG L+ SF T
Sbjct: 316 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKT 348
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 120 (47.3 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/35 (65%), Positives = 25/35 (71%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
+Q GPEG NL IYHLP EF DA+L MF PFG V
Sbjct: 413 QQREGPEGCNLLIYHLPQEFGDAELMQMFLPFGFV 447
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
GP GAN+F++HLP ++D +L F FG V+SA++ D N R+K +G + F
Sbjct: 146 GPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDA-NGRNKGYGFVSF 197
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/53 (43%), Positives = 35/53 (66%)
Query: 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
GP GAN+F++HLP ++D +L F FG V+SA++ D N R+K +G + F
Sbjct: 146 GPPGANVFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDA-NGRNKGYGFVSF 197
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 118 (46.6 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 36/117 (30%), Positives = 56/117 (47%)
Query: 1 MQNLVTLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADL 60
+ NL+ +A + SP + G+ S A + G TG +F+Y+L P+ ++ L
Sbjct: 268 LDNLLNMAYGVKS-RFSPMTIDGMTSL-AGINIPGHPGTG---WCIFVYNLAPDADESIL 322
Query: 61 ASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLK 116
MFGPFG V + KV D N+ K FG + M + + + N Y LG L+
Sbjct: 323 WQMFGPFGAVTNVKVIRDFNTNKCKGFG-FVTMTNYDEAAMAIASLNGYRLGDRVLQ 378
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 115 (45.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 36/107 (33%), Positives = 51/107 (47%)
Query: 17 SPTALSGLAS-SNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
SP + ++S S+ V SS G +FIY+L + + L MFGPFG V + KV
Sbjct: 221 SPMGVDHMSSISSVNVASSASS-----GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKV 275
Query: 76 FIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 276 IRDFNTNKCKGFG-FVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKT 321
>UNIPROTKB|F1P022 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
Uniprot:F1P022
Length = 325
Score = 114 (45.2 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 27/52 (51%), Positives = 29/52 (55%)
Query: 13 AGTMSPTALS-GLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASM 63
A PT S L +A GS Q GPEGANLFIYHLP EF D D+ M
Sbjct: 277 AAAALPTLYSQSLLQQQSAAGS---QKEGPEGANLFIYHLPQEFGDQDILQM 325
>GENEDB_PFALCIPARUM|PFL1745c [details] [associations]
symbol:PFL1745c "clustered-asparagine-rich
protein" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AE014188 Gene3D:2.20.70.10
SUPFAM:SSF51045 RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562
IntAct:Q8I562 MINT:MINT-1548460 PRIDE:Q8I562
EnsemblProtists:PFL1745c:mRNA GeneID:811401 KEGG:pfa:PFL1745c
EuPathDB:PlasmoDB:PF3D7_1236100 HOGENOM:HOG000283459 Uniprot:Q8I562
Length = 445
Score = 116 (45.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
KQ GP G+NLFI+H+P E++D DL F FG ++S+K+ D R+ FG + +
Sbjct: 353 KQ-NGPSGSNLFIFHIPSEWTDLDLFQHFCCFGNIISSKIQRDS-TGRNSGFGFVSY 407
>UNIPROTKB|Q8I562 [details] [associations]
symbol:PFL1745c "Clustered-asparagine-rich protein"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR001202 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AE014188 Gene3D:2.20.70.10 SUPFAM:SSF51045
RefSeq:XP_001350755.2 ProteinModelPortal:Q8I562 IntAct:Q8I562
MINT:MINT-1548460 PRIDE:Q8I562 EnsemblProtists:PFL1745c:mRNA
GeneID:811401 KEGG:pfa:PFL1745c EuPathDB:PlasmoDB:PF3D7_1236100
HOGENOM:HOG000283459 Uniprot:Q8I562
Length = 445
Score = 116 (45.9 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
KQ GP G+NLFI+H+P E++D DL F FG ++S+K+ D R+ FG + +
Sbjct: 353 KQ-NGPSGSNLFIFHIPSEWTDLDLFQHFCCFGNIISSKIQRDS-TGRNSGFGFVSY 407
>ZFIN|ZDB-GENE-030131-4967 [details] [associations]
symbol:rbms1a "RNA binding motif, single stranded
interacting protein 1a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-4967 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CR792451
IPI:IPI00507907 Ensembl:ENSDART00000064860 Bgee:E7FAG7
Uniprot:E7FAG7
Length = 398
Score = 115 (45.5 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 16 MSPTALSGLASSNAAVGSSGKQLTGPEG---ANLFIYHLPPEFSDADLASMFGPFGTVLS 72
M+P + S +S+N + SS TG E NL+I LPP +D DL + P+G ++S
Sbjct: 28 MAPPSPSTNSSTNNS--SSSSSTTGWEQLSKTNLYIRGLPPGTTDHDLVKLCQPYGKIVS 85
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
K +DK N+ K +G + F
Sbjct: 86 TKAILDKTTNKCKGYGFVDF 105
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 113 (44.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 35/107 (32%), Positives = 51/107 (47%)
Query: 17 SPTALSGLAS-SNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
SP + ++S S+ V SS G +F+Y+L + + L MFGPFG V + KV
Sbjct: 232 SPMGVDHMSSISSVNVASSATS-----GWCIFVYNLGQDADEGILWQMFGPFGAVTNVKV 286
Query: 76 FIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ SF T
Sbjct: 287 IRDFNTNKCKGFG-FVTMTNYEEAAMAIASLNGYRLGDKTLQVSFKT 332
>ZFIN|ZDB-GENE-040801-51 [details] [associations]
symbol:rbms2b "RNA binding motif, single stranded
interacting protein 2b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040801-51 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 OMA:GHQMAPP EMBL:BX005414 EMBL:BC076435
IPI:IPI00482514 RefSeq:NP_001003541.1 UniGene:Dr.33950 SMR:Q6DGB5
Ensembl:ENSDART00000060059 GeneID:445147 KEGG:dre:445147
InParanoid:Q6DGB5 NextBio:20831910 Uniprot:Q6DGB5
Length = 400
Score = 113 (44.8 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 16 MSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
M+P + + +SSN + S G QL+ NL+I L P +D DL + P+G ++S K
Sbjct: 34 MAPPSPNTTSSSNGS-SSGGDQLSK---TNLYIRGLHPGTTDQDLVKLCQPYGKIVSTKA 89
Query: 76 FIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 90 ILDKTTNKCKGYGFVDF 106
>UNIPROTKB|F8W1T6 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC090681 HGNC:HGNC:9909 EMBL:AC097104 IPI:IPI01022509
ProteinModelPortal:F8W1T6 SMR:F8W1T6 Ensembl:ENST00000552247
ArrayExpress:F8W1T6 Bgee:F8W1T6 Uniprot:F8W1T6
Length = 344
Score = 111 (44.1 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A M+P + S ++ N++ GS+G QL+ NL+I L P +D DL + P+G ++
Sbjct: 28 AQQMAPPSPSN-STPNSSSGSNGNDQLSK---TNLYIRGLQPGTTDQDLVKLCQPYGKIV 83
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
S K +DK N+ K +G + F
Sbjct: 84 STKAILDKTTNKCKGYGFVDF 104
>UNIPROTKB|B4QRJ0 [details] [associations]
symbol:shep "Protein alan shepard" species:7240 "Drosophila
simulans" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CM000363 OrthoDB:EOG4C8687 RefSeq:XP_002083716.1
ProteinModelPortal:B4QRJ0 EnsemblMetazoa:FBtr0213117 GeneID:6736860
KEGG:dsi:Dsim_GD13207 FlyBase:FBgn0184928 Uniprot:B4QRJ0
Length = 576
Score = 114 (45.2 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 194 SGTLS-TSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCA 252
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFF 97
+GT++S K +DK N KC+G + F + F
Sbjct: 253 QYGTIISTKAILDKTTN--KCYGFVDFEQPAF 282
Score = 99 (39.9 bits), Expect = 0.00032, P = 0.00032
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 20 ALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
A+ GL + +Q P NL+I +LPP F + DL +M +G V+S ++ D+
Sbjct: 286 AVKGLQGKGVQAQMAKQQEQDP--TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 343
Query: 80 QNNRSKCFG 88
Q N SK G
Sbjct: 344 QMN-SKGVG 351
>FB|FBgn0052423 [details] [associations]
symbol:shep "alan shepard" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042332 "gravitaxis" evidence=IMP] [GO:0009629 "response to
gravity" evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:AE014296 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0009629 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HSSP:Q15434 OrthoDB:EOG4C8687 EMBL:AY060954
EMBL:AY060995 EMBL:AY094948 EMBL:AY118564 RefSeq:NP_001163350.1
RefSeq:NP_729054.3 RefSeq:NP_729055.1 RefSeq:NP_729056.1
RefSeq:NP_729057.2 UniGene:Dm.20861 ProteinModelPortal:Q8MSV2
SMR:Q8MSV2 MINT:MINT-339377 PaxDb:Q8MSV2 PRIDE:Q8MSV2
EnsemblMetazoa:FBtr0077172 GeneID:38605 KEGG:dme:Dmel_CG32423
UCSC:CG32423-RA CTD:38605 FlyBase:FBgn0052423 InParanoid:Q9VRK5
OMA:LVNMCAQ PhylomeDB:Q8MSV2 GenomeRNAi:38605 NextBio:809487
Bgee:Q8MSV2 Uniprot:Q8MSV2
Length = 578
Score = 114 (45.2 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 194 SGTLS-TSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCA 252
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFF 97
+GT++S K +DK N+ K +G + F + F
Sbjct: 253 QYGTIISTKAILDKTTNKCKGYGFVDFEQPAF 284
Score = 99 (39.9 bits), Expect = 0.00032, P = 0.00032
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 20 ALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
A+ GL + +Q P NL+I +LPP F + DL +M +G V+S ++ D+
Sbjct: 288 AVKGLQGKGVQAQMAKQQEQDP--TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 345
Query: 80 QNNRSKCFG 88
Q N SK G
Sbjct: 346 QMN-SKGVG 353
>UNIPROTKB|B4HUE4 [details] [associations]
symbol:shep "Protein alan shepard" species:7238 "Drosophila
sechellia" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH480817 OrthoDB:EOG4C8687 RefSeq:XP_002035429.1
ProteinModelPortal:B4HUE4 EnsemblMetazoa:FBtr0196912 GeneID:6610863
KEGG:dse:Dsec_GM13927 FlyBase:FBgn0168857 Uniprot:B4HUE4
Length = 579
Score = 114 (45.2 bits), Expect = 7.8e-06, P = 7.8e-06
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 194 SGTLS-TSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCA 252
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFF 97
+GT++S K +DK N+ K +G + F + F
Sbjct: 253 QYGTIISTKAILDKTTNKCKGYGFVDFEQPAF 284
Score = 99 (39.9 bits), Expect = 0.00032, P = 0.00032
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 20 ALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
A+ GL + +Q P NL+I +LPP F + DL +M +G V+S ++ D+
Sbjct: 288 AVKGLQGKGVQAQMAKQQEQDP--TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 345
Query: 80 QNNRSKCFG 88
Q N SK G
Sbjct: 346 QMN-SKGVG 353
>UNIPROTKB|B3NGA1 [details] [associations]
symbol:shep "Protein alan shepard" species:7220 "Drosophila
erecta" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH954178 OrthoDB:EOG4C8687 RefSeq:XP_001971976.1
ProteinModelPortal:B3NGA1 EnsemblMetazoa:FBtr0134193 GeneID:6544279
KEGG:der:Dere_GG14139 FlyBase:FBgn0106400 Uniprot:B3NGA1
Length = 582
Score = 114 (45.2 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 194 SGTLS-TSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCA 252
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFF 97
+GT++S K +DK N+ K +G + F + F
Sbjct: 253 QYGTIISTKAILDKTTNKCKGYGFVDFEQPAF 284
Score = 99 (39.9 bits), Expect = 0.00032, P = 0.00032
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 20 ALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
A+ GL + +Q P NL+I +LPP F + DL +M +G V+S ++ D+
Sbjct: 288 AVKGLQGKGVQAQMAKQQEQDP--TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 345
Query: 80 QNNRSKCFG 88
Q N SK G
Sbjct: 346 QMN-SKGVG 353
>UNIPROTKB|B4PIS2 [details] [associations]
symbol:shep "Protein alan shepard" species:7245 "Drosophila
yakuba" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CM000159 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002093780.1 ProteinModelPortal:B4PIS2
EnsemblMetazoa:FBtr0267086 GeneID:6533045 KEGG:dya:Dyak_GE20568
FlyBase:FBgn0237877 Uniprot:B4PIS2
Length = 582
Score = 114 (45.2 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 30/92 (32%), Positives = 49/92 (53%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 194 SGTLS-TSLSNTTNTNTNMGPNGTVQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCA 252
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFF 97
+GT++S K +DK N+ K +G + F + F
Sbjct: 253 QYGTIISTKAILDKTTNKCKGYGFVDFEQPAF 284
Score = 99 (39.9 bits), Expect = 0.00032, P = 0.00032
Identities = 24/69 (34%), Positives = 36/69 (52%)
Query: 20 ALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
A+ GL + +Q P NL+I +LPP F + DL +M +G V+S ++ D+
Sbjct: 288 AVKGLQGKGVQAQMAKQQEQDP--TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 345
Query: 80 QNNRSKCFG 88
Q N SK G
Sbjct: 346 QMN-SKGVG 353
>ZFIN|ZDB-GENE-060929-244 [details] [associations]
symbol:rbms3 "RNA binding motif, single stranded
interacting protein" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060929-244
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 EMBL:CR626944 EMBL:CR848052
EMBL:CR848810 IPI:IPI00920287 Ensembl:ENSDART00000125804
Ensembl:ENSDART00000136719 Uniprot:F1QEI2
Length = 415
Score = 112 (44.5 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 26 SSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSK 85
S+N++ S+ +QL+ NL+I LPP +D DL + P+G ++S K +DK N+ K
Sbjct: 41 STNSSSHSAAEQLSK---TNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCK 97
Query: 86 CFGTIIF 92
+G + F
Sbjct: 98 GYGFVDF 104
>UNIPROTKB|B3M3R5 [details] [associations]
symbol:shep "Protein alan shepard" species:7217 "Drosophila
ananassae" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH902618 eggNOG:NOG320163 RefSeq:XP_001957552.1
ProteinModelPortal:B3M3R5 GeneID:6493340 KEGG:dan:Dana_GF10470
FlyBase:FBgn0087511 InParanoid:B3M3R5 OrthoDB:EOG4C8687
Uniprot:B3M3R5
Length = 597
Score = 114 (45.2 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 199 SGTLS-TSLSNTTNTNTNMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLVNMCA 257
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFF 97
+GT++S K +DK N KC+G + F + F
Sbjct: 258 QYGTIISTKAILDKTTN--KCYGFVDFEQPAF 287
>UNIPROTKB|Q15434 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006396 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP
EMBL:D28483 EMBL:BC027863 EMBL:BC072679 IPI:IPI00003706 PIR:S47660
RefSeq:NP_002889.1 UniGene:Hs.505729 UniGene:Hs.683360 PDB:1X4E
PDBsum:1X4E ProteinModelPortal:Q15434 SMR:Q15434 IntAct:Q15434
STRING:Q15434 PhosphoSite:Q15434 DMDM:55976301 PRIDE:Q15434
Ensembl:ENST00000262031 GeneID:5939 KEGG:hsa:5939 UCSC:uc001sln.2
GeneCards:GC12P056915 HGNC:HGNC:9909 HPA:HPA039225 MIM:602387
neXtProt:NX_Q15434 PharmGKB:PA34275 InParanoid:Q15434
PhylomeDB:Q15434 EvolutionaryTrace:Q15434 GenomeRNAi:5939
NextBio:23154 ArrayExpress:Q15434 Bgee:Q15434 CleanEx:HS_RBMS2
Genevestigator:Q15434 GermOnline:ENSG00000076067 Uniprot:Q15434
Length = 407
Score = 111 (44.1 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVL 71
A M+P + S ++ N++ GS+G QL+ NL+I L P +D DL + P+G ++
Sbjct: 28 AQQMAPPSPSN-STPNSSSGSNGNDQLSK---TNLYIRGLQPGTTDQDLVKLCQPYGKIV 83
Query: 72 SAKVFIDKQNNRSKCFGTIIF 92
S K +DK N+ K +G + F
Sbjct: 84 STKAILDKTTNKCKGYGFVDF 104
>UNIPROTKB|B4KX02 [details] [associations]
symbol:shep "Protein alan shepard" species:7230 "Drosophila
mojavensis" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH933809 OrthoDB:EOG4C8687 RefSeq:XP_002008147.1
ProteinModelPortal:B4KX02 EnsemblMetazoa:FBtr0162707 GeneID:6582444
KEGG:dmo:Dmoj_GI11982 FlyBase:FBgn0134739 InParanoid:B4KX02
Uniprot:B4KX02
Length = 592
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 192 SGTLS-TSLSNTTNTNTTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCA 250
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+GT++S K +DK N+ K +G + F
Sbjct: 251 QYGTIISTKAILDKTTNKCKGYGFVDF 277
Score = 96 (38.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
NL+I +LPP F + DL +M FG V+S ++ D+Q N SK G
Sbjct: 320 NLYIANLPPHFKETDLEAMLAKFGQVVSTRILRDQQMN-SKGVG 362
Score = 38 (18.4 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 6 TLAAMTGAGTMSPTALSGLASSNAAVGSSGKQ 37
T A T G PTA S +++++ ++G Q
Sbjct: 160 TTPATTTYGQRVPTAASPSNTNSSSSSNTGSQ 191
>UNIPROTKB|B4LFQ9 [details] [associations]
symbol:shep "Protein alan shepard" species:7244 "Drosophila
virilis" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0009629 "response to gravity"
evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH940647 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002046944.1 ProteinModelPortal:B4LFQ9 GeneID:6622264
KEGG:dvi:Dvir_GJ12205 FlyBase:FBgn0199455 InParanoid:B4LFQ9
Uniprot:B4LFQ9
Length = 595
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 206 SGTLS-TSLSNTTNTNTTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCA 264
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+GT++S K +DK N+ K +G + F
Sbjct: 265 QYGTIISTKAILDKTTNKCKGYGFVDF 291
Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 20 ALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
A+ GL + + +Q P NL+I +LPP F + DL +M +G V+S ++ D+
Sbjct: 300 AVKGLQAKGVQAQMAKQQEQDP--TNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQ 357
Query: 80 QNNRSKCFG 88
Q N SK G
Sbjct: 358 QMN-SKGVG 365
>UNIPROTKB|B4IX08 [details] [associations]
symbol:shep "Protein alan shepard" species:7222 "Drosophila
grimshawi" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH916366 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_001983966.1 ProteinModelPortal:B4IX08
EnsemblMetazoa:FBtr0150687 GeneID:6558604 KEGG:dgr:Dgri_GH15273
FlyBase:FBgn0122748 InParanoid:B4IX08 OMA:DDQYSSS Uniprot:B4IX08
Length = 609
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 13 AGTMSPTALSGLASSNAAVGSSGK-QLTGPEGA------NLFIYHLPPEFSDADLASMFG 65
+GT+S T+LS ++N +G +G Q +G NL+I L +D DL +M
Sbjct: 220 SGTLS-TSLSNTTNTNTTMGPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCA 278
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+GT++S K +DK N+ K +G + F
Sbjct: 279 QYGTIISTKAILDKTTNKCKGYGFVDF 305
Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 20 ALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
A+ GL + + +Q P NL+I +LPP F + DL +M +G V+S ++ D+
Sbjct: 314 AVKGLQAKGVQAQMAKQQEQDP--TNLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQ 371
Query: 80 QNNRSKCFG 88
Q N SK G
Sbjct: 372 QMN-SKGVG 379
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 108 (43.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 35/107 (32%), Positives = 49/107 (45%)
Query: 17 SPTALSGLAS-SNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
SP + ++S S V SS G +FIY+L + + L MFGPFG V + KV
Sbjct: 221 SPMGVDHMSSISGVNVASSASS-----GWCIFIYNLGQDADEGILWQMFGPFGAVTNVKV 275
Query: 76 FIDKQNNRSKCFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
D N+ K FG + M + + + N Y LG L+ F T
Sbjct: 276 IRDFNTNKCKGFG-FVTMTNYEEAAMAIASLNGYRLGDKTLQVFFKT 321
>ZFIN|ZDB-GENE-040923-2 [details] [associations]
symbol:rbfox1l "RNA binding protein, fox-1 homolog
(C. elegans) 1-like" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IGI;IDA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA;IGI;IDA;IMP] [GO:0048739 "cardiac muscle fiber
development" evidence=IGI] [GO:0048741 "skeletal muscle fiber
development" evidence=IGI] [GO:0008380 "RNA splicing"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR017325 Pfam:PF00076
PIRSF:PIRSF037932 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040923-2 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048741
GO:GO:0043484 GO:GO:0048739 eggNOG:NOG258617
GeneTree:ENSGT00390000013767 KO:K14946 HOVERGEN:HBG000044
InterPro:IPR025670 Pfam:PF12414 HSSP:Q9NWB1 EMBL:AB074763
EMBL:BX511250 IPI:IPI00505620 RefSeq:NP_999940.1 UniGene:Dr.30455
ProteinModelPortal:Q7ZT82 SMR:Q7ZT82 STRING:Q7ZT82 PRIDE:Q7ZT82
Ensembl:ENSDART00000027364 GeneID:407613 KEGG:dre:407613 CTD:407613
InParanoid:Q7ZT82 OMA:LYRGGYN OrthoDB:EOG4CRM0S NextBio:20818492
ArrayExpress:Q7ZT82 Bgee:Q7ZT82 Uniprot:Q7ZT82
Length = 382
Score = 108 (43.1 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Query: 15 TMSPTALS-GLASSNAAVGSSGKQLTGP-EGANLFIYHLPPEFSDADLASMFGPFGTVLS 72
T P +LS +AS + A G S ++ G + L + ++P F D DL MFG FG +L
Sbjct: 116 TSDPQSLSVSVASGSGAAGGSDEEGGGKAQPKRLHVSNIPFRFRDPDLRQMFGQFGKILD 175
Query: 73 AKVFIDKQNNRSKCFGTIIF 92
++ +++ SK FG + F
Sbjct: 176 VEIIFNERG--SKGFGFVTF 193
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 107 (42.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/97 (29%), Positives = 46/97 (47%)
Query: 26 SSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSK 85
S + +V S + G +F+Y+L + + L MFGPFG V + KV D ++ K
Sbjct: 268 SVDHSVSSMNVASSSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCK 327
Query: 86 CFGTIIFMRKFFILTIRFDTANDY-LGQSFLKPSFNT 121
FG + M + + + N Y LG L+ SF +
Sbjct: 328 GFG-FVTMTNYEEAAMAISSLNGYRLGDKVLQVSFKS 363
>UNIPROTKB|D4A988 [details] [associations]
symbol:Rbms2 "Protein Rbms2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 RGD:1304813 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 OrthoDB:EOG469QV2 IPI:IPI00567496
Ensembl:ENSRNOT00000004137 ArrayExpress:D4A988 Uniprot:D4A988
Length = 352
Score = 106 (42.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 18 PTALSGLASSNAAVGSSGK-QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
P+ +G + N++ GS G QL+ NL+I L P +D DL + P+G ++S K
Sbjct: 32 PSPRNG--TPNSSSGSGGNDQLSK---TNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAI 86
Query: 77 IDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 87 LDKTTNKCKGYGFVDF 102
>UNIPROTKB|B4MM23 [details] [associations]
symbol:shep "Protein alan shepard" species:7260 "Drosophila
willistoni" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009629 "response
to gravity" evidence=ISS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009629 EMBL:CH963847 eggNOG:NOG320163 OrthoDB:EOG4C8687
RefSeq:XP_002062046.1 ProteinModelPortal:B4MM23 GeneID:6639197
KEGG:dwi:Dwil_GK17327 FlyBase:FBgn0219326 InParanoid:B4MM23
Uniprot:B4MM23
Length = 581
Score = 109 (43.4 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/88 (32%), Positives = 45/88 (51%)
Query: 6 TLAAMTGAGT-MSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMF 64
+L+ T T M P +G A + G G+QL+ NL+I L +D DL +M
Sbjct: 204 SLSHTTNTNTNMGP---NGTAQNQNQQGGGGEQLSK---TNLYIRGLQQGTTDKDLVNMC 257
Query: 65 GPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+GT++S K +DK N+ K +G + F
Sbjct: 258 AQYGTIISTKAILDKTTNKCKGYGFVDF 285
Score = 100 (40.3 bits), Expect = 0.00025, P = 0.00025
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 20 ALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
A+ GL + + +Q P NL+I +LPP F + DL +M +G V+S ++ D+
Sbjct: 294 AVKGLQAKGVQAQMAKQQEQDP--TNLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQ 351
Query: 80 QNNRSKCFG 88
Q N SK G
Sbjct: 352 QMN-SKGVG 359
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 105 (42.0 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 38 LTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ EG+ +F+ L PE +D DL F FG +L ++ +++ RS+ FG I F
Sbjct: 1 MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITF 55
>RGD|1304813 [details] [associations]
symbol:Rbms2 "RNA binding motif, single stranded interacting
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1304813 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH474104 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108 CTD:5939
OMA:SQQMAPP EMBL:BC097377 IPI:IPI00371268 RefSeq:NP_001020574.1
UniGene:Rn.162925 SMR:Q4QR81 Ensembl:ENSRNOT00000048848
GeneID:288771 KEGG:rno:288771 UCSC:RGD:1304813 InParanoid:Q4QR81
NextBio:628683 Genevestigator:Q4QR81 Uniprot:Q4QR81
Length = 379
Score = 106 (42.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 18 PTALSGLASSNAAVGSSGK-QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
P+ +G + N++ GS G QL+ NL+I L P +D DL + P+G ++S K
Sbjct: 32 PSPRNG--TPNSSSGSGGNDQLSK---TNLYIRGLQPSTTDQDLVKLCQPYGKIVSTKAI 86
Query: 77 IDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 87 LDKTTNKCKGYGFVDF 102
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 7 LAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGP 66
LAAM G M A++ SS K+ T ++F+ L PE + D+ + F P
Sbjct: 55 LAAMNGRKIMGKEVKVNWATTP----SSQKKDTSNH-FHVFVGDLSPEITTEDIKAAFAP 109
Query: 67 FGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIR 102
FG + A+V D +SK +G + F K+ + ++R
Sbjct: 110 FGRISDARVVKDMATGKSKGYGFVSFFNKW-VSSVR 144
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 99 (39.9 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L +F PFGT+ SAKV D++ +SK FG + F
Sbjct: 448 QGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE-QSKGFGFVCF 497
Score = 34 (17.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 2 QNLVTLAAMTGAGTMSPTALS-GLASSNAAVGSSGKQLTGPEGAN 45
+ T A G + LS +SN GSS + E N
Sbjct: 332 ETTTTTANADSTGANNNNGLSPNTNTSNTTTGSSNNSINLNENNN 376
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 99 (39.9 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L +F PFGT+ SAKV D++ +SK FG + F
Sbjct: 448 QGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE-QSKGFGFVCF 497
Score = 34 (17.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 12/45 (26%), Positives = 16/45 (35%)
Query: 2 QNLVTLAAMTGAGTMSPTALS-GLASSNAAVGSSGKQLTGPEGAN 45
+ T A G + LS +SN GSS + E N
Sbjct: 332 ETTTTTANADSTGANNNNGLSPNTNTSNTTTGSSNNSINLNENNN 376
>UNIPROTKB|D4A288 [details] [associations]
symbol:D4A288 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG469QV2
IPI:IPI00358787 ProteinModelPortal:D4A288
Ensembl:ENSRNOT00000039637 Uniprot:D4A288
Length = 291
Score = 103 (41.3 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 23/75 (30%), Positives = 39/75 (52%)
Query: 18 PTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFI 77
P+ +G +S+ + G+ T NL+I L P +D DL + P+G ++S K +
Sbjct: 4 PSPRNGAPNSSRSSGNDQMSKT-----NLYIRGLQPSITDQDLVKLCQPYGKIVSTKAIL 58
Query: 78 DKQNNRSKCFGTIIF 92
DK N+ K +G + F
Sbjct: 59 DKTTNKCKGYGFVDF 73
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 108 (43.1 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL++ ++ + +D L F FGT+ SAKV +D +N RSK FG + F
Sbjct: 341 QGVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCF 390
>UNIPROTKB|E1BLT2 [details] [associations]
symbol:SLTM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003034
InterPro:IPR012677 Pfam:PF00076 Pfam:PF02037 PROSITE:PS50102
PROSITE:PS50800 SMART:SM00360 SMART:SM00513 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:1.10.720.30
GeneTree:ENSGT00690000102108 OMA:HDARRMG EMBL:DAAA02028819
EMBL:DAAA02028820 IPI:IPI00715190 Ensembl:ENSBTAT00000015043
Uniprot:E1BLT2
Length = 1033
Score = 95 (38.5 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
+ + +SG +G N+++ L ADL ++FG +G VLSAKV + ++ +KC+G
Sbjct: 373 STISASGS--SGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYG 430
Query: 89 TI 90
+
Sbjct: 431 IV 432
Score = 38 (18.4 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 7 LAAMTGAGTMSPTALSGLA 25
+AA TGA ++P+A SG A
Sbjct: 1 MAAATGA--VAPSAASGQA 17
>UNIPROTKB|F1PPC3 [details] [associations]
symbol:F1PPC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000077064 EMBL:AAEX03002929
ProteinModelPortal:F1PPC3 Ensembl:ENSCAFT00000037406 Uniprot:F1PPC3
Length = 335
Score = 102 (41.0 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 31/95 (32%), Positives = 43/95 (45%)
Query: 32 GSSGKQLTGPEGAN--LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
G SG + G + +FIY+L + + L MFGPFG V + KV D N+ K FG
Sbjct: 238 GLSGVSVLGDASSGWCIFIYNLGRDTHEGILWQMFGPFGAVTNVKVIRDFSTNKHKGFG- 296
Query: 90 IIFMRKFFILTIRFDTANDY-LGQSFLKPSFNTYV 123
+ M + + N LG L SF Y+
Sbjct: 297 FVTMTNHEEAAMAVASLNSSRLGDKILFISFKIYI 331
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 100 (40.3 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 120 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 173
>UNIPROTKB|F1P990 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 CTD:5939 OMA:SQQMAPP EMBL:AAEX03006927
RefSeq:XP_538236.2 ProteinModelPortal:F1P990
Ensembl:ENSCAFT00000000217 GeneID:481115 KEGG:cfa:481115
Uniprot:F1P990
Length = 407
Score = 103 (41.3 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 26/78 (33%), Positives = 44/78 (56%)
Query: 16 MSPTALSGLASSNAAVGSSGK-QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAK 74
M+P + S ++ N++ GS+G QL+ NL+I L P +D DL + +G ++S K
Sbjct: 31 MAPPSPSS-STPNSSSGSNGNDQLSK---TNLYIRGLQPGTTDQDLVKLCQSYGKIVSTK 86
Query: 75 VFIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 87 AILDKSTNKCKGYGFVDF 104
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
A SS K+ T ++F+ L PE + D+ S F PFG + A+V D +SK +G
Sbjct: 44 ATTPSSQKKDTSNH-FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG 102
Query: 89 TIIFMRK 95
+ F K
Sbjct: 103 FVSFYNK 109
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 100 (40.3 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 156 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 209
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 104 (41.7 bits), Expect = 8.6e-05, P = 8.6e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
ANL+I L P ++A+L +FG FG V+ K+ D S+C G + F ++
Sbjct: 197 ANLYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQR 248
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 104 (41.7 bits), Expect = 0.00010, P = 0.00010
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV +D RSK FG + F
Sbjct: 287 RMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMD--GGRSKGFGFVCF 340
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 98 (39.6 bits), Expect = 0.00011, P = 0.00011
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 19 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 67
>MGI|MGI:1861776 [details] [associations]
symbol:Rbms2 "RNA binding motif, single stranded interacting
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1861776 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00630000089747
eggNOG:NOG320163 HOGENOM:HOG000008467 HOVERGEN:HBG053108
OrthoDB:EOG469QV2 CTD:5939 OMA:SQQMAPP EMBL:BC021627 EMBL:AK054482
IPI:IPI00121520 RefSeq:NP_001034169.1 RefSeq:NP_062685.2
UniGene:Mm.42247 ProteinModelPortal:Q8VC70 SMR:Q8VC70 STRING:Q8VC70
PhosphoSite:Q8VC70 PRIDE:Q8VC70 Ensembl:ENSMUST00000092033
GeneID:56516 KEGG:mmu:56516 UCSC:uc007hlm.1 InParanoid:Q8VC70
ChiTaRS:RBMS2 NextBio:312832 Bgee:Q8VC70 Genevestigator:Q8VC70
GermOnline:ENSMUSG00000040043 Uniprot:Q8VC70
Length = 383
Score = 101 (40.6 bits), Expect = 0.00011, P = 0.00011
Identities = 26/77 (33%), Positives = 39/77 (50%)
Query: 17 SPTALSGLASSNAAVGSSGK-QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV 75
SP + +S GS G QL+ NL+I L P +D DL + P+G ++S K
Sbjct: 33 SPRNSTPNSSGGGGGGSGGNDQLSK---TNLYIRGLQPGTTDQDLVKLCQPYGKIVSTKA 89
Query: 76 FIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 90 ILDKTTNKCKGYGFVDF 106
>UNIPROTKB|F1NDG5 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:AADN02030982 IPI:IPI00680068
Ensembl:ENSGALT00000033037 ArrayExpress:F1NDG5 Uniprot:F1NDG5
Length = 56
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
++F+ L PE + D+ S F PFG + A+V D +SK +G + F K
Sbjct: 5 HVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 55
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTI 90
G+ L++ +L DADL F +GTV SA+V +D+ RS+ FG +
Sbjct: 2 GSKLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFV 49
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 103 (41.3 bits), Expect = 0.00014, P = 0.00014
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NLFI +L E D L + F FGT+ SAK+ D+Q +SK FG + +
Sbjct: 362 QGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQG-KSKGFGFVCY 411
>UNIPROTKB|Q3SZM1 [details] [associations]
symbol:MKI67IP "MKI67 FHA domain-interacting nucleolar
phosphoprotein" species:9913 "Bos taurus" [GO:0010923 "negative
regulation of phosphatase activity" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000794 "condensed nuclear chromosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000794
GO:GO:0010923 EMBL:BC102791 IPI:IPI00706135 RefSeq:NP_001029526.1
UniGene:Bt.53167 HSSP:Q9BYG3 ProteinModelPortal:Q3SZM1 SMR:Q3SZM1
STRING:Q3SZM1 Ensembl:ENSBTAT00000031564 GeneID:509598
KEGG:bta:509598 CTD:84365 eggNOG:NOG244773
GeneTree:ENSGT00390000011515 HOGENOM:HOG000242795
HOVERGEN:HBG057796 InParanoid:Q3SZM1 KO:K14838 OMA:QVRKRIT
OrthoDB:EOG4MKNGX NextBio:20869038 InterPro:IPR021043 Pfam:PF12196
Uniprot:Q3SZM1
Length = 296
Score = 98 (39.6 bits), Expect = 0.00015, P = 0.00015
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILT 100
P +++ HLPP + + + F FGTV ++ K+ SK +G + F + +
Sbjct: 42 PTPGVIYVGHLPPTLYETQIRAYFSQFGTVTRFRLSRSKKTGNSKGYGFVEFESED-VAK 100
Query: 101 IRFDTANDYL-GQSFLKPSF 119
I +T N+YL G+ LK F
Sbjct: 101 IAAETMNNYLFGERLLKCHF 120
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
Identities = 29/91 (31%), Positives = 44/91 (48%)
Query: 6 TLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFG 65
+LAAM G M A+S SS K+ T ++F+ L PE + D+ + F
Sbjct: 63 SLAAMNGRKIMGKEVKVNWATSP----SSQKKDTSNH-FHVFVGDLSPEITTDDIRAAFA 117
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIFMRKF 96
PFG + A+V D +SK +G + F K+
Sbjct: 118 PFGRISDARVVKDMATGKSKGYGFVSFFNKW 148
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 100 (40.3 bits), Expect = 0.00019, P = 0.00019
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 119 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 172
>UNIPROTKB|F1RXX7 [details] [associations]
symbol:MKI67 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000011515 OMA:QVRKRIT InterPro:IPR021043
Pfam:PF12196 EMBL:AEMK01028690 EMBL:CU655817
Ensembl:ENSSSCT00000017130 Uniprot:F1RXX7
Length = 294
Score = 97 (39.2 bits), Expect = 0.00019, P = 0.00019
Identities = 22/72 (30%), Positives = 38/72 (52%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKFFILTIRFDT 105
+++ HLPP + + + F FGTV ++ K+ SK +G + F + + I +T
Sbjct: 47 IYVGHLPPSLYETQIRAYFSQFGTVTRLRLSRSKKTGNSKGYGFVEFESED-VARIAAET 105
Query: 106 ANDYL-GQSFLK 116
N+YL G+ LK
Sbjct: 106 MNNYLFGERLLK 117
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 101 (40.6 bits), Expect = 0.00019, P = 0.00019
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NLF+ +L D L F P+GT+ SAKV + +N +SK FG + F
Sbjct: 320 QGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCF 369
>FB|FBgn0052062 [details] [associations]
symbol:A2bp1 "Ataxin-2 binding protein 1" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007474 "imaginal
disc-derived wing vein specification" evidence=IMP] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0048477
"oogenesis" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893
GO:GO:0007399 EMBL:AE014296 GO:GO:0000166 GO:GO:0007474
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0044212
HSSP:P09651 KO:K14946 UniGene:Dm.5024 GeneID:39198
KEGG:dme:Dmel_CG32062 CTD:39198 FlyBase:FBgn0052062 ChiTaRS:A2bp1
GenomeRNAi:39198 NextBio:812445 RefSeq:NP_729614.2
ProteinModelPortal:Q9VT99 SMR:Q9VT99 MINT:MINT-1333195
UCSC:CG32062-RD InParanoid:Q9VT99 PhylomeDB:Q9VT99
ArrayExpress:Q9VT99 Bgee:Q9VT99 Uniprot:Q9VT99
Length = 881
Score = 103 (41.3 bits), Expect = 0.00020, P = 0.00020
Identities = 31/93 (33%), Positives = 48/93 (51%)
Query: 8 AAMTGAGTMSP-----TALSGL---ASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDAD 59
AA +G +SP T+LS A S AAV ++ + L + ++P F D D
Sbjct: 392 AAAAASGIVSPSANVATSLSSALVPAQSVAAVAAASLDAKS-QPKRLHVSNIPFRFRDPD 450
Query: 60 LASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
L +MFG FGT+L ++ +++ SK FG + F
Sbjct: 451 LRAMFGQFGTILDVEIIFNERG--SKGFGFVTF 481
>WB|WBGene00022235 [details] [associations]
symbol:sqd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000003 GO:GO:0003676 EMBL:FO081731
eggNOG:COG0724 GeneTree:ENSGT00700000104255 KO:K03102
RefSeq:NP_001023574.1 ProteinModelPortal:Q4W5P0 SMR:Q4W5P0
STRING:Q4W5P0 PaxDb:Q4W5P0 PRIDE:Q4W5P0 EnsemblMetazoa:Y73B6BL.6b.1
EnsemblMetazoa:Y73B6BL.6b.2 EnsemblMetazoa:Y73B6BL.6b.3
EnsemblMetazoa:Y73B6BL.6b.4 EnsemblMetazoa:Y73B6BL.6b.5
EnsemblMetazoa:Y73B6BL.6b.6 EnsemblMetazoa:Y73B6BL.6b.7
EnsemblMetazoa:Y73B6BL.6b.8 GeneID:177392 KEGG:cel:CELE_Y73B6BL.6
UCSC:Y73B6BL.6a.7 CTD:177392 WormBase:Y73B6BL.6b
HOGENOM:HOG000017794 InParanoid:Q4W5P0 OMA:GHQTGYK NextBio:896614
ArrayExpress:Q4W5P0 Uniprot:Q4W5P0
Length = 308
Score = 97 (39.2 bits), Expect = 0.00020, P = 0.00020
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 21 LSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQ 80
++G AS + +G G E +F+ + PE ++ DL+S F +G V A+V D+
Sbjct: 8 INGNASET--IKENGHSTKGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRT 65
Query: 81 NNRSKCFGTIIF 92
N RS+ F + F
Sbjct: 66 NGRSRGFAFVEF 77
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ +NL++ +L P SD L +F PFGTV S+KV D N SK G + F
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDP-NGTSKGSGFVAF 365
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 96 (38.9 bits), Expect = 0.00022, P = 0.00022
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 7 LAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGP 66
LAAM G M A++ SS K+ T ++F+ L PE + D+ + F P
Sbjct: 59 LAAMNGRKIMGKEVKVNWATTP----SSQKKDTSNH-FHVFVGDLSPEITTEDIKAAFAP 113
Query: 67 FGTVLSAKVFIDKQNNRSKCFGTIIFMRKF 96
FG + A+V D +SK +G + F K+
Sbjct: 114 FGRISDARVVKDMATGKSKGYGFVSFFNKW 143
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 96 (38.9 bits), Expect = 0.00023, P = 0.00023
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 7 LAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGP 66
LAAM G M A++ SS K+ T ++F+ L PE + D+ + F P
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTP----SSQKKDTSNH-FHVFVGDLSPEITTEDIKAAFAP 117
Query: 67 FGTVLSAKVFIDKQNNRSKCFGTIIFMRKF 96
FG + A+V D +SK +G + F K+
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKW 147
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 101 (40.6 bits), Expect = 0.00023, P = 0.00023
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
P N+++ +LP E + +L FG FG + SA V D+ N S+CFG + F
Sbjct: 226 PRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGN-SRCFGFVNF 276
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 97 (39.2 bits), Expect = 0.00024, P = 0.00024
Identities = 30/90 (33%), Positives = 44/90 (48%)
Query: 7 LAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGP 66
LAAM G + AS+ SS K+ T ++F+ L PE S D+ + F P
Sbjct: 65 LAAMNGRKILGKDMKVNWASTP----SSQKKDTSNH-FHVFVGDLSPEISTDDVRAAFAP 119
Query: 67 FGTVLSAKVFIDKQNNRSKCFGTIIFMRKF 96
FG + A+V D +SK +G I F+ K+
Sbjct: 120 FGKISDARVVKDLATGKSKGYGFISFINKW 149
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 100 (40.3 bits), Expect = 0.00024, P = 0.00024
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 223 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 276
>UNIPROTKB|F8VR27 [details] [associations]
symbol:RBFOX1 "RNA-binding protein fox-1 homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005774 EMBL:AC006075 EMBL:AC006112 EMBL:AC007012
EMBL:AC007217 EMBL:AC007222 EMBL:AC007223 EMBL:AC009135
EMBL:AC022206 EMBL:AC023829 EMBL:AC027683 EMBL:AC079410
EMBL:AC125796 EMBL:AC131390 HGNC:HGNC:18222 ChiTaRS:RBFOX1
IPI:IPI01023064 ProteinModelPortal:F8VR27 SMR:F8VR27
Ensembl:ENST00000547605 UCSC:uc002cyr.1 ArrayExpress:F8VR27
Bgee:F8VR27 Uniprot:F8VR27
Length = 262
Score = 95 (38.5 bits), Expect = 0.00025, P = 0.00025
Identities = 28/95 (29%), Positives = 48/95 (50%)
Query: 6 TLAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGP--------EGANLFIYHLPPEFSD 57
T + + A T + T +SG A+++ A + G+ T P + L + ++P F D
Sbjct: 71 THSEQSPADTSAQT-VSGTATTDDAAPTDGQPQTQPSENTENKSQPKRLHVSNIPFRFRD 129
Query: 58 ADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
DL MFG FG +L ++ +++ SK FG + F
Sbjct: 130 PDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTF 162
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 100 (40.3 bits), Expect = 0.00025, P = 0.00025
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 242 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 295
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 98 (39.6 bits), Expect = 0.00026, P = 0.00026
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 47 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 95
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 100 (40.3 bits), Expect = 0.00026, P = 0.00026
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 255 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 308
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 93 (37.8 bits), Expect = 0.00027, P = 0.00027
Identities = 22/80 (27%), Positives = 40/80 (50%)
Query: 17 SPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
+P++ SS+ V + Q + ++F+ L PE + D+ + F PFG + A+V
Sbjct: 83 TPSSQKKDTSSSTVVSTQRSQ----DHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVV 138
Query: 77 IDKQNNRSKCFGTIIFMRKF 96
D +SK +G + F K+
Sbjct: 139 KDMATGKSKGYGFVSFFNKW 158
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/57 (38%), Positives = 32/57 (56%)
Query: 36 KQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++L +G NLF+ +L L F PFGT+ SAKV +D+ +SK FG + F
Sbjct: 328 EKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAG-KSKGFGFVCF 383
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RMTRYQGVNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 100 (40.3 bits), Expect = 0.00028, P = 0.00028
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 100 (40.3 bits), Expect = 0.00029, P = 0.00029
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
++T +G NL++ +L D L F PFGT+ SAKV ++ RSK FG + F
Sbjct: 287 RITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMME--GGRSKGFGFVCF 340
>UNIPROTKB|Q3ZC34 [details] [associations]
symbol:RBMS2 "RNA-binding motif,
single-stranded-interacting protein 2" species:9913 "Bos taurus"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00630000089747 eggNOG:NOG320163 HOGENOM:HOG000008467
HOVERGEN:HBG053108 OrthoDB:EOG469QV2 EMBL:BC102935 IPI:IPI00706755
RefSeq:NP_001029537.1 UniGene:Bt.87430 HSSP:Q15434
ProteinModelPortal:Q3ZC34 SMR:Q3ZC34 PRIDE:Q3ZC34
Ensembl:ENSBTAT00000023705 GeneID:509798 KEGG:bta:509798 CTD:5939
InParanoid:Q3ZC34 OMA:SQQMAPP NextBio:20869135 Uniprot:Q3ZC34
Length = 407
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 16 MSPTALSGLASSNAAVGSSGK-QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAK 74
M+P + S ++ N++ GS+ QL+ NL+I L P +D DL + +G ++S K
Sbjct: 31 MAPPSPSS-STPNSSSGSTAHDQLSK---TNLYIRGLQPSTTDQDLVKLCQSYGKIVSTK 86
Query: 75 VFIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 87 AILDKTTNKCKGYGFVDF 104
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 7 LAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGP 66
LAAM G M A++ SS K+ T ++F+ L PE + D+ + F P
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTP----SSQKKDTSNH-FHVFVGDLSPEITTEDIKAAFAP 117
Query: 67 FGTVLSAKVFIDKQNNRSKCFGTIIFMRKF 96
FG + A+V D +SK +G + F K+
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKW 147
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
Identities = 28/90 (31%), Positives = 43/90 (47%)
Query: 7 LAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGP 66
LAAM G M A++ SS K+ T ++F+ L PE + D+ + F P
Sbjct: 63 LAAMNGRKIMGKEVKVNWATTP----SSQKKDTSNH-FHVFVGDLSPEITTEDIKAAFAP 117
Query: 67 FGTVLSAKVFIDKQNNRSKCFGTIIFMRKF 96
FG + A+V D +SK +G + F K+
Sbjct: 118 FGRISDARVVKDMATGKSKGYGFVSFFNKW 147
>UNIPROTKB|F1M131 [details] [associations]
symbol:F1M131 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00196639
Ensembl:ENSRNOT00000018496 ArrayExpress:F1M131 Uniprot:F1M131
Length = 376
Score = 96 (38.9 bits), Expect = 0.00036, P = 0.00036
Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 30 AVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
+ GS+G +G N+++ L ADL ++FG +G VLSAKV + ++ +KC+G
Sbjct: 282 STGSAGGG-SGSSTKNIWVSGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGI 340
Query: 90 I 90
+
Sbjct: 341 V 341
>UNIPROTKB|F1SLB3 [details] [associations]
symbol:RBMS2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00630000089747 EMBL:CU633731
EMBL:CU655980 Ensembl:ENSSSCT00000000434 OMA:GHQMAPP
ArrayExpress:F1SLB3 Uniprot:F1SLB3
Length = 281
Score = 94 (38.1 bits), Expect = 0.00037, P = 0.00037
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 16 MSPTALSGLASSNAAVGSS-GKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAK 74
M+P + S ++ N++ GS+ QL+ NL+I L P +D DL + +G ++S K
Sbjct: 1 MAPPSPSN-STPNSSNGSNVNDQLSK---TNLYIRGLQPGTTDQDLVKLCQSYGKIVSTK 56
Query: 75 VFIDKQNNRSKCFGTIIF 92
+DK N+ K +G + F
Sbjct: 57 AILDKTTNKCKGYGFVDF 74
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 95 (38.5 bits), Expect = 0.00038, P = 0.00038
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTI 90
Q +G EG L++ +LP + ++L+ +FG GTV+ ++ DK +RS+ FG +
Sbjct: 110 QASGEEG-RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFV 162
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 94 (38.1 bits), Expect = 0.00038, P = 0.00038
Identities = 29/86 (33%), Positives = 40/86 (46%)
Query: 8 AAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGAN-LFIYHLPPEFSDADLASMFGP 66
AA G+G + TA SG + N A G E A +F+ L + S DL F
Sbjct: 40 AASAGSGGGTTTAPSG--NQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTK 97
Query: 67 FGTVLSAKVFIDKQNNRSKCFGTIIF 92
FG V+ + +D RS+ FG I+F
Sbjct: 98 FGEVVDCTIKMDPNTGRSRGFGFILF 123
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 98 (39.6 bits), Expect = 0.00038, P = 0.00038
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 194 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 242
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 98 (39.6 bits), Expect = 0.00041, P = 0.00041
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 221 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 269
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 98 (39.6 bits), Expect = 0.00044, P = 0.00044
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 340
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 340
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 340
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 340
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 98 (39.6 bits), Expect = 0.00045, P = 0.00045
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 340
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 98 (39.6 bits), Expect = 0.00046, P = 0.00046
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV +++ RSK FG + F
Sbjct: 293 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEE--GRSKGFGFVCF 341
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 98 (39.6 bits), Expect = 0.00047, P = 0.00047
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 340
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 98 (39.6 bits), Expect = 0.00047, P = 0.00047
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 340
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 98 (39.6 bits), Expect = 0.00048, P = 0.00048
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 340
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 98 (39.6 bits), Expect = 0.00052, P = 0.00052
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G NL+I +L D L F PFG++ SAKV ++ + RSK FG + F
Sbjct: 332 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLE--DGRSKGFGFVCF 380
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 18/49 (36%), Positives = 25/49 (51%)
Query: 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
A LF+ L +D L +F PFG + A++ D + R K FG I F
Sbjct: 7 AQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITF 55
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 94 (38.1 bits), Expect = 0.00058, P = 0.00058
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
A SS K+ T ++F+ L PE + D+ S F PFG + A+V D +SK +G
Sbjct: 100 ATTPSSQKKDTSNH-FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG 158
Query: 89 TIIFMRK 95
+ F K
Sbjct: 159 FVSFYNK 165
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 94 (38.1 bits), Expect = 0.00059, P = 0.00059
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
A SS K+ T ++F+ L PE + D+ S F PFG + A+V D +SK +G
Sbjct: 100 ATTPSSQKKDTSNH-FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG 158
Query: 89 TIIFMRK 95
+ F K
Sbjct: 159 FVSFYNK 165
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 94 (38.1 bits), Expect = 0.00060, P = 0.00060
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
A SS K+ T ++F+ L PE + D+ S F PFG + A+V D +SK +G
Sbjct: 83 ATTPSSQKKDTSNH-FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG 141
Query: 89 TIIFMRK 95
+ F K
Sbjct: 142 FVSFYNK 148
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 94 (38.1 bits), Expect = 0.00061, P = 0.00061
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
A SS K+ T ++F+ L PE + D+ S F PFG + A+V D +SK +G
Sbjct: 83 ATTPSSQKKDTSNH-FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG 141
Query: 89 TIIFMRK 95
+ F K
Sbjct: 142 FVSFYNK 148
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 94 (38.1 bits), Expect = 0.00063, P = 0.00063
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 7 LAAMTGAGTMSPTALSGLASSNAAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMF-G 65
L GA S L + A G Q GP+ +F+ L PE +D L+ F
Sbjct: 118 LQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHT-IFVGDLAPEVTDYMLSDTFKN 176
Query: 66 PFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+G+V AKV +D+ RSK +G + F
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRF 203
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 94 (38.1 bits), Expect = 0.00063, P = 0.00063
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
A SS K+ T ++F+ L PE + D+ S F PFG + A+V D +SK +G
Sbjct: 99 ATTPSSQKKDTSNH-FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG 157
Query: 89 TIIFMRK 95
+ F K
Sbjct: 158 FVSFYNK 164
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 94 (38.1 bits), Expect = 0.00063, P = 0.00063
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
A SS K+ T ++F+ L PE + D+ S F PFG + A+V D +SK +G
Sbjct: 100 ATTPSSQKKDTSNH-FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG 158
Query: 89 TIIFMRK 95
+ F K
Sbjct: 159 FVSFYNK 165
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 94 (38.1 bits), Expect = 0.00064, P = 0.00064
Identities = 23/67 (34%), Positives = 34/67 (50%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFG 88
A SS K+ T ++F+ L PE + D+ S F PFG + A+V D +SK +G
Sbjct: 100 ATTPSSQKKDTSNH-FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYG 158
Query: 89 TIIFMRK 95
+ F K
Sbjct: 159 FVSFYNK 165
WARNING: HSPs involving 16 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.392 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 128 128 0.00091 102 3 11 22 0.49 30
29 0.41 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 266
No. of states in DFA: 533 (57 KB)
Total size of DFA: 105 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.42u 0.06s 14.48t Elapsed: 00:00:14
Total cpu time: 14.44u 0.06s 14.50t Elapsed: 00:00:14
Start: Thu Aug 15 14:19:14 2013 End: Thu Aug 15 14:19:28 2013
WARNINGS ISSUED: 2