RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8615
(128 letters)
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 50.9 bits (121), Expect = 5e-10
Identities = 42/65 (64%), Positives = 48/65 (73%)
Query: 31 VGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTI 90
+G++G Q GPEGANLFIYHLP EF D DL MF PFG V+SAKVFIDKQ N SKCFG +
Sbjct: 6 IGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFV 65
Query: 91 IFMRK 95
+
Sbjct: 66 SYDNP 70
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 45.4 bits (107), Expect = 5e-08
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ +F L DL F G V ++ D+ + RSK + F
Sbjct: 17 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEF 67
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.2 bits (104), Expect = 1e-07
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
+ ++L + LP + ++ DL F FG VL +V D + SK FG + F
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEY 60
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 43.8 bits (103), Expect = 2e-07
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
NL++ +LP +D L ++FG +G+++ + DK R + + + ++
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKR 58
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 43.1 bits (101), Expect = 3e-07
Identities = 13/53 (24%), Positives = 30/53 (56%)
Query: 43 GANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
ANL++ LP + +L +F +G ++++++ +D+ S+ G I F ++
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKR 58
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 42.2 bits (99), Expect = 6e-07
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
A+L++ L P+ ++A L F P G +LS +V D RS + + F
Sbjct: 1 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNF 49
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 40.8 bits (95), Expect = 2e-06
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 35 GKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
G + L ++ L ++ DL +F +G + + D+Q+ RS+ F + F
Sbjct: 1 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 58
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 40.3 bits (94), Expect = 4e-06
Identities = 8/56 (14%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFID-KQNNRSKCFGTIIFMRK 95
+ + + ++P + + ++ +F FG + + ++ + FG + F+ K
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITK 61
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 39.6 bits (92), Expect = 5e-06
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
NL + +LP + +D +L ++F G + + ++ D + S + + F
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDF 51
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 40.0 bits (93), Expect = 5e-06
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 33 SSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
SSG + L + ++P F D DL MFG FG +L ++ +++ ++ F T
Sbjct: 1 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVT 57
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 40.0 bits (93), Expect = 6e-06
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 39 TGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVF 76
+ P+ ++ + +D + F PFG ++ +VF
Sbjct: 14 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 51
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 39.9 bits (93), Expect = 6e-06
Identities = 7/54 (12%), Positives = 22/54 (40%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
+ L++ +L ++ + +F G + + +DK + F + + +
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSR 59
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 39.2 bits (91), Expect = 7e-06
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
LFI L E +D L S F +GT+ V D RS+ FG + +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 58
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 39.2 bits (91), Expect = 9e-06
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+F+ L P+ + + FG FG V S ++ +D + N+ + F I F
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITF 48
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 39.3 bits (91), Expect = 1e-05
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRKF 96
LFI L E ++ L + + +G + V D + RS+ FG + F
Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMA 73
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 39.2 bits (91), Expect = 1e-05
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
+ A +++ L + S+ L +F G V++ + D+ + + +G + F+ +
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 61
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 40.4 bits (93), Expect = 1e-05
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
LFI L E +D L S F +GT+ V D RS+ FG + +
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 55
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 38.4 bits (89), Expect = 2e-05
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
+FI L + + DL F FG V+ + +D RS+ FG ++F
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES 51
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 38.7 bits (89), Expect = 2e-05
Identities = 12/64 (18%), Positives = 19/64 (29%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTII 91
GSSG + + LP S ++ F V + RS +
Sbjct: 4 GSSGNSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQ 63
Query: 92 FMRK 95
F +
Sbjct: 64 FASQ 67
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 38.7 bits (90), Expect = 2e-05
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPE-FSDADLASMFGPFGTVLSAKVF 76
GSSGK + +FI +L +D+ ++F +G ++ V
Sbjct: 4 GSSGKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVH 49
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 38.1 bits (88), Expect = 2e-05
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
L++ L E D L + F PFG + ++ +D + + + F + F
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEF 54
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 37.7 bits (87), Expect = 2e-05
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
+FI L + + L FG FG V V D RS+ FG + FM +
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQ 52
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 38.1 bits (88), Expect = 3e-05
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK---QNNRSKCFGTIIFMRK 95
LFI +L ++ L +F G + S + K S FG + + +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKP 53
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 37.4 bits (86), Expect = 4e-05
Identities = 10/52 (19%), Positives = 25/52 (48%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
EG LF+ + E + ++ F +G + + + +D++ SK + + +
Sbjct: 5 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEY 56
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 37.3 bits (86), Expect = 4e-05
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
LFI LP +D + + FG + + + D SK + ++
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDI 53
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 37.3 bits (86), Expect = 4e-05
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
N+FI +L + L F FG +LS KV D+ ++ F
Sbjct: 9 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVH 54
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 37.5 bits (86), Expect = 6e-05
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKV--------FIDKQNNRSKCFGTIIF 92
+ + +++ L + DLA F G V K ++DK+ + K T+ +
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSY 65
Query: 93 MRK 95
Sbjct: 66 EDP 68
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 37.0 bits (85), Expect = 7e-05
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTII 91
GSSG LF+ +L S+ DL +F +G + ID + K F +
Sbjct: 1 GSSG----SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVT 56
Query: 92 FMRK 95
FM
Sbjct: 57 FMFP 60
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 36.7 bits (84), Expect = 1e-04
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
EG +FI +L + + L + FG + +V + SK FM +
Sbjct: 6 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQ 60
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 36.2 bits (83), Expect = 1e-04
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
Query: 33 SSGKQLTGPEGAN---LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
S G + GP G N +++ +LPP+ D+ +F +G + + K F
Sbjct: 1 SGGGVIRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAI---RDIDLKNRRGGPPFAF 57
Query: 90 IIF 92
+ F
Sbjct: 58 VEF 60
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.3 bits (83), Expect = 1e-04
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKV-----FIDKQNNRSKCFG 88
L++ ++P ++ + F + + Q N+ K F
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFA 51
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 35.8 bits (82), Expect = 2e-04
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 33 SSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
SSGK P + + ++P S ++ F + + + + + F
Sbjct: 3 SSGK----PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAF 58
Query: 93 MRK 95
+
Sbjct: 59 ESR 61
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 35.8 bits (82), Expect = 2e-04
Identities = 9/44 (20%), Positives = 20/44 (45%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
L++ +L + ++ + +F G S K+ + +N CF
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVE 54
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 35.5 bits (81), Expect = 2e-04
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFM 93
NL + +LP + + S+FG G + S K+ DK +S +G + ++
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYI 52
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.9 bits (82), Expect = 2e-04
Identities = 14/64 (21%), Positives = 21/64 (32%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTII 91
GSSG +L F+ +LP + ++ + F R K FG
Sbjct: 4 GSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAE 63
Query: 92 FMRK 95
F
Sbjct: 64 FEDL 67
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 35.8 bits (82), Expect = 3e-04
Identities = 9/57 (15%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 41 PEGAN--LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
P N L+I +LP + + ++ +FG +G + ++ +++
Sbjct: 3 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQ---IRVGNTPETRGTAYVVYEDI 56
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 35.2 bits (80), Expect = 3e-04
Identities = 9/50 (18%), Positives = 20/50 (40%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
L++ + PP ++ ++ + V + + N S+ F I K
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSK 53
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.4 bits (81), Expect = 3e-04
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ A + + +L + + DL +F PFG++ + DK +SK F I F
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 57
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.7 bits (79), Expect = 5e-04
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTV-LSAKVFIDKQNNRSKCFGTIIF 92
+FI +L PE + L F FG + + K+ D SK + I F
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINF 48
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 34.3 bits (78), Expect = 5e-04
Identities = 7/47 (14%), Positives = 21/47 (44%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+F+ + + + L F +G + ++ D+ + + + F + F
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 51
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 34.8 bits (79), Expect = 5e-04
Identities = 13/56 (23%), Positives = 21/56 (37%)
Query: 40 GPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
G L++ +L P ++ DL S+F F + R + I F K
Sbjct: 15 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNK 70
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.9 bits (77), Expect = 0.001
Identities = 5/52 (9%), Positives = 15/52 (28%), Gaps = 2/52 (3%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQN--NRSKCFGTIIFMRK 95
LFI +P ++ + + +++ F + +
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESH 55
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 33.2 bits (75), Expect = 0.001
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
+F+ L + D+ F FG V A + DK NR + FG + F +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 51
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 32.5 bits (73), Expect = 0.003
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 45 NLFIYHLPPEFSDADLASMF---GPFGTVLSAKVFIDKQNNRSKCFGTIIFM 93
+F+ L +D ++ G FG + + S+ ++
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYV 61
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 32.2 bits (73), Expect = 0.003
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCF 87
L + +L SDAD+ +F FGT+ A V D+
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTA 44
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 31.6 bits (71), Expect = 0.008
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
+F+ LP +DA L F FG + A V D+Q +S+ +G + +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 31.7 bits (71), Expect = 0.008
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 1/52 (1%)
Query: 37 QLTGPEGANL-FIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCF 87
L G L F L + DL +F G + +
Sbjct: 4 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFK 55
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 30.5 bits (68), Expect = 0.018
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQN 81
GSSG + + L +ADL FGT+ + K+
Sbjct: 4 GSSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQ 53
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 30.1 bits (67), Expect = 0.024
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 42 EGANLFIYHLPPEFSDAD-LASMFGPFGTV-LSAKVFIDKQNNRSKCFGTIIF 92
EG + I +L E D + L F FG++ K+++ + C ++F
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVF 55
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 29.7 bits (66), Expect = 0.029
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDK 79
L+I +L P + DL +FG L+ +V +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKS 37
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 30.1 bits (67), Expect = 0.031
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTII 91
GSSG G + + LP ++ D+ + F P + + R +
Sbjct: 4 GSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM--RVHIEIGPDGRVTGEADVE 61
Query: 92 FMRK 95
F
Sbjct: 62 FATH 65
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.7 bits (66), Expect = 0.032
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
+ LF+ L + ++ L +F +G + V D++ RS+ FG + F
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTF 54
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 29.4 bits (65), Expect = 0.035
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTI 90
+ + +LP ++ + F G ++ V + N
Sbjct: 2 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEF 47
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 29.6 bits (66), Expect = 0.037
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGT 89
GSSG + +F+ + ++ +L F +G V+ + + F
Sbjct: 1 GSSG-------SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFAD 51
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 29.2 bits (65), Expect = 0.049
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFG 68
LF+ +LPP+ ++ ++ +F +G
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYG 33
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 29.3 bits (65), Expect = 0.052
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 32 GSSGKQLTG--PEGANLFIYHLPPEFSDADLASMF 64
GSSGK G L++ L P S A LA F
Sbjct: 4 GSSGKIGYGKANPTTRLWVGGLGPNTSLAALAREF 38
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 29.2 bits (65), Expect = 0.054
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKC 86
+ + +L + L +F FGTVL F ++
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALL 50
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 29.4 bits (65), Expect = 0.054
Identities = 6/51 (11%), Positives = 15/51 (29%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
I ++P + D+ +A + N + + F +
Sbjct: 10 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNE 60
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 28.8 bits (64), Expect = 0.064
Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFM 93
L++ +L S+ + F +V + + + + F
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFS 52
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 29.1 bits (64), Expect = 0.084
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIF 92
NL + ++P + L +F +G + S K+ D++ +S+ +G + F
Sbjct: 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKF 91
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 28.2 bits (62), Expect = 0.10
Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
+++I P + + D+ G VL+ + K ++F
Sbjct: 8 SVYIKGFPTDATLDDIKEWLEDKGQVLN-IQMRRTLHKAFKGSIFVVFDSI 57
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 27.8 bits (61), Expect = 0.13
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 46 LFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFMRK 95
L+I L P +D DL + P+G ++S K +DK N+ K +G + F
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSP 50
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 27.8 bits (61), Expect = 0.18
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 41 PEGANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKC 86
P A L + ++PP S+ DL +F G V+ F K +
Sbjct: 8 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALI 53
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 27.4 bits (60), Expect = 0.24
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMF 64
GSSG T + + LPP S DL
Sbjct: 4 GSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHM 36
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 27.3 bits (60), Expect = 0.25
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 42 EGANLFIYHLPPEFSDADLASMFGPF 67
L +L ++ +L +F
Sbjct: 15 AARTLLAKNLSFNITEDELKEVFEDA 40
>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase
{Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 171
Score = 28.1 bits (61), Expect = 0.26
Identities = 4/27 (14%), Positives = 6/27 (22%)
Query: 47 FIYHLPPEFSDADLASMFGPFGTVLSA 73
+ LP + VL
Sbjct: 131 SVIKLPKDVRVEVDIHKLDEINDVLER 157
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 26.8 bits (59), Expect = 0.36
Identities = 3/50 (6%), Positives = 12/50 (24%), Gaps = 7/50 (14%)
Query: 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFM 93
+ ++ P + L + + + + I +
Sbjct: 5 TWVTVFGFPQASASYILLQFA-------QYGNILKHVMSNTGNWMHIRYQ 47
>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase
{Pseudomonas putida [TaxId: 303]}
Length = 201
Score = 26.8 bits (58), Expect = 0.67
Identities = 4/30 (13%), Positives = 11/30 (36%)
Query: 44 ANLFIYHLPPEFSDADLASMFGPFGTVLSA 73
A+ + LP + ++ G + +
Sbjct: 143 ADFNLLKLPDRDKAMEKINIAEVVGVQVIS 172
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 26.3 bits (57), Expect = 0.71
Identities = 11/49 (22%), Positives = 27/49 (55%)
Query: 45 NLFIYHLPPEFSDADLASMFGPFGTVLSAKVFIDKQNNRSKCFGTIIFM 93
++F+ ++P E ++ L +F G V+S ++ D++ + K +G +
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQ 58
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.9 bits (56), Expect = 0.80
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 45 NLFIYHLPPEFSDADLASMF 64
NL+I +LP + +L +M
Sbjct: 20 NLYISNLPLSMDEQELENML 39
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.5 bits (55), Expect = 1.1
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
GSSG + + + +LP + + ++ + +
Sbjct: 1 GSSG-------SSGILVKNLPQDSNCQEVHDLLKDYDLK 32
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 25.3 bits (54), Expect = 1.6
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 32 GSSGKQLTGPEGANLFIYHLPPEFSDADLASMF 64
GSSG G + +LP A++ F
Sbjct: 1 GSSGSS--GRSKTVILAKNLPAGTLAAEIQETF 31
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 24.3 bits (52), Expect = 3.1
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 46 LFIYHLPP-EFSDADLASMFGPFGTVLSAKVFIDKQ 80
+ I + L + PFG + + +
Sbjct: 11 VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN 46
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 24.0 bits (51), Expect = 3.2
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 37 QLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
Q P LF+ +LP E ++ L+ +F F
Sbjct: 2 QTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGF 35
>d1oi1a1 b.34.9.3 (A:33-135) Scml2 protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 24.1 bits (52), Expect = 3.5
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 77 IDKQNNRSKCFGTIIFMRKFFILTIRFD 104
D +N S C T+I + + +R D
Sbjct: 40 RDPRNATSVCIATVIGITGARLR-LRLD 66
>d1whva_ d.58.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 100
Score = 24.1 bits (52), Expect = 3.5
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 29 AAVGSSGKQLTGPEGANLFIYHLPPEFSDADLASMFGPFGTV 70
++ S G L P+ ++ P E+ +DL +F FG +
Sbjct: 2 SSGSSGGPDLQ-PKRDHVLHVTFPKEWKTSDLYQLFSAFGNI 42
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 24.2 bits (52), Expect = 3.6
Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 46 LFIYHLPPEFSDADLASMFGP-FGTVLSAKVFIDKQNNRSKCFGTIIF 92
++I +L + +L F + ++ + + +IF
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIF 53
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.392
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 433,715
Number of extensions: 17170
Number of successful extensions: 107
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 78
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.7 bits)