BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8617
(184 letters)
Database: pdbaa
65,211 sequences; 15,674,573 total letters
Searching..................................................done
>pdb|4AQE|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 20/162 (12%)
Query: 25 TYKLIQDDTAVDLDTGNNARITYKLIQD---DKLVHDT--------FHIMPNTGWLSLKQ 73
TY LI +DT V + +T L +D D LV F + P+TG + L+Q
Sbjct: 16 TYLLISEDTPV------GSSVTQLLARDMDNDPLVFGVPGEEASRFFAVEPDTGVVWLRQ 69
Query: 74 PMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRG 133
P+DRET+ +F ++ + D+ ++ V I V D NDN P F Q Y I EN P G
Sbjct: 70 PLDRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPTFHNQPYSVRIPENTPVG 126
Query: 134 TVVGSVKATDEDLASNAALRYSLIPSNTSFQINPFSGKKSIL 175
T + V ATD DL + ++ YS P + F I+ G +++
Sbjct: 127 TPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVI 168
>pdb|2WCP|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2
pdb|2WHV|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 (all Cation
Binding Sites Occupied By Calcium)
pdb|4APX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AXW|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 214
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 20/162 (12%)
Query: 25 TYKLIQDDTAVDLDTGNNARITYKLIQD---DKLVHDT--------FHIMPNTGWLSLKQ 73
TY LI +DT V + +T L +D D LV F + P+TG + L+Q
Sbjct: 16 TYLLISEDTPV------GSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQ 69
Query: 74 PMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRG 133
P+DRET+ +F ++ + D+ ++ V I V D NDN P F Q Y I EN P G
Sbjct: 70 PLDRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPTFHNQPYSVRIPENTPVG 126
Query: 134 TVVGSVKATDEDLASNAALRYSLIPSNTSFQINPFSGKKSIL 175
T + V ATD DL + ++ YS P + F I+ G +++
Sbjct: 127 TPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVI 168
>pdb|3MVS|A Chain A, Structure Of The N-Terminus Of Cadherin 23
Length = 210
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 81/162 (50%), Gaps = 20/162 (12%)
Query: 25 TYKLIQDDTAVDLDTGNNARITYKLIQD---DKLVHDT--------FHIMPNTGWLSLKQ 73
TY LI +DT V + +T L +D D LV F + P+TG + L+Q
Sbjct: 15 TYLLISEDTPV------GSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQ 68
Query: 74 PMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRG 133
P+DRET+ +F ++ + D+ ++ V I V D NDN P F Q Y I EN P G
Sbjct: 69 PLDRETKSEFTVEFSVSDHQGVITRK---VNIQVGDVNDNAPTFHNQPYSVRIPENTPVG 125
Query: 134 TVVGSVKATDEDLASNAALRYSLIPSNTSFQINPFSGKKSIL 175
T + V ATD DL + ++ YS P + F I+ G +++
Sbjct: 126 TPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVI 167
>pdb|2WD0|A Chain A, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|2WD0|C Chain C, Crystal Structure Of Nonsyndromic Deafness (Dfnb12)
Associated Mutant D124g Of Mouse Cadherin-23 Ec1-2
pdb|4AQA|A Chain A, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
Length = 214
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/162 (33%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 25 TYKLIQDDTAVDLDTGNNARITYKLIQD---DKLVHDT--------FHIMPNTGWLSLKQ 73
TY LI +DT V + +T L +D D LV F + P+TG + L+Q
Sbjct: 16 TYLLISEDTPV------GSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQ 69
Query: 74 PMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRG 133
P+DRET+ +F ++ + D+ ++ V I V NDN P F Q Y I EN P G
Sbjct: 70 PLDRETKSEFTVEFSVSDHQGVITRK---VNIQVGGVNDNAPTFHNQPYSVRIPENTPVG 126
Query: 134 TVVGSVKATDEDLASNAALRYSLIPSNTSFQINPFSGKKSIL 175
T + V ATD DL + ++ YS P + F I+ G +++
Sbjct: 127 TPIFIVNATDPDLGAGGSVLYSFQPPSPFFAIDSARGIVTVI 168
>pdb|1L3W|A Chain A, C-Cadherin Ectodomain
Length = 546
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKI-AACDNGTPVSTAYATVAINVLDAN 111
D F I TGW+ + +P+DRE DK++L A +NG+PV + INV+D N
Sbjct: 50 DNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME-ITINVIDQN 108
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN PKF++ + S+ E + GT V +V ATDED + N L YS++ P
Sbjct: 109 DNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNL 168
Query: 163 FQINPFSGKKSIL 175
F IN +G S++
Sbjct: 169 FTINRETGVISLI 181
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 42 NARITYKLIQDD--KLVHDTFHIMPNTGWLSL-KQPMDRETRDKFLLKIAACDNGTPVST 98
N ++Y +++ D + + + F I TG +SL +DRE ++ L + A D +
Sbjct: 149 NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLS 208
Query: 99 AYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALR 153
I + DANDN P F + Y + EN G V + TD D+ A +
Sbjct: 209 VEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQ 262
Score = 30.0 bits (66), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 75 MDRETR----DKFLLKIAACDNGTPVSTAYATVAINVLDANDNDP 115
+DRE+ + + + + D+G V T T+ ++VLD NDN P
Sbjct: 400 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 444
>pdb|1Q55|A Chain A, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|B Chain B, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|C Chain C, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q55|D Chain D, W-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|A Chain A, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5A|B Chain B, S-Shaped Trans Interactions Of Cadherins Model Based On
Fitting C- Cadherin (1l3w) To 3d Map Of Desmosomes
Obtained By Electron Tomography
pdb|1Q5B|A Chain A, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|B Chain B, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5B|C Chain C, Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|A Chain A, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|B Chain B, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|C Chain C, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
pdb|1Q5C|D Chain D, S-S-Lambda-Shaped Trans And Cis Interactions Of Cadherins
Model Based On Fitting C-Cadherin (1l3w) To 3d Map Of
Desmosomes Obtained By Electron Tomography
Length = 880
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 11/126 (8%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKFLLKI-AACDNGTPVSTAYATVAINVLDANDNDPKFS 118
F I TGW+ + +P+DRE DK++L A +NG+PV + INV+D NDN PKF+
Sbjct: 206 FRIEWETGWMLVTRPLDREEYDKYVLSSHAVSENGSPVEEPME-ITINVIDQNDNRPKFT 264
Query: 119 KQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTSFQINPFS 169
+ + S+ E + GT V +V ATDED + N L YS++ P F IN +
Sbjct: 265 QDVFRGSVREGVQPGTQVMAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRET 324
Query: 170 GKKSIL 175
G S++
Sbjct: 325 GVISLI 330
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 4/115 (3%)
Query: 42 NARITYKLIQDD--KLVHDTFHIMPNTGWLSL-KQPMDRETRDKFLLKIAACDNGTPVST 98
N ++Y +++ D + + + F I TG +SL +DRE ++ L + A D +
Sbjct: 298 NGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLS 357
Query: 99 AYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALR 153
I + DANDN P F + Y + EN G V + TD D+ A +
Sbjct: 358 VEGKAIIQITDANDNAPIFDPKTYTALVPEN-EIGFEVQRLSVTDLDMPGTPAWQ 411
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 75 MDRETR----DKFLLKIAACDNGTPVSTAYATVAINVLDANDNDP 115
+DRE+ + + + + D+G V T T+ ++VLD NDN P
Sbjct: 549 LDRESEYVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDVNDNGP 593
>pdb|2A62|A Chain A, Crystal Structure Of Mouse Cadherin-8 Ec1-3
Length = 322
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 71/131 (54%), Gaps = 10/131 (7%)
Query: 33 TAVDLDT---GNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQP-MDRETRDKFLLKIA 88
TA D D GN+A++ Y +++ F I P T + P MDRE ++++L+ I
Sbjct: 129 TATDADDPVYGNSAKLVYSILEGQPY----FSIEPETAIIKTALPNMDREAKEEYLVVIQ 184
Query: 89 ACDNGTPVS--TAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDL 146
A D G + T+ + + D NDN PKF++ Y FS+ E++ GT +G VKA D+D+
Sbjct: 185 AKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHFSVPEDVVLGTAIGRVKANDQDI 244
Query: 147 ASNAALRYSLI 157
NA Y +I
Sbjct: 245 GENAQSSYDII 255
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 36 DLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGT- 94
DLD G+ +I Y L D F I TG + + +DRE + ++ L A D T
Sbjct: 27 DLDPGSK-KIKYILSGDG--AGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDFETN 83
Query: 95 -PVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNA 150
P+ + I V D NDN P+F Y ++ E GT V +V ATD D ++A
Sbjct: 84 KPLEPPSEFI-IKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGNSA 142
Query: 151 ALRYSLIPSNTSFQINP 167
L YS++ F I P
Sbjct: 143 KLVYSILEGQPYFSIEP 159
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 34 AVDLDTGNNARITYKLIQDD--KLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACD 91
A D D G NA+ +Y +I D L T G + L++P+D ET+ + LK+ A +
Sbjct: 239 ANDQDIGENAQSSYDIIDGDGTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVEAAN 298
>pdb|3LNI|A Chain A, Crystal Structure Of E-Cadherin Ec12 E89a
pdb|3LNI|B Chain B, Crystal Structure Of E-Cadherin Ec12 E89a
Length = 213
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V+ V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVADPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 163 FTVNRDTGVISVL 175
>pdb|3QRB|A Chain A, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
pdb|3QRB|B Chain B, Crystal Structure Of E-Cadherin Ec1-2 P5a P6a
Length = 213
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 163 FTVNRDTGVISVL 175
>pdb|3LNH|A Chain A, Crystal Structure Of E-Cadherin Ec12 W2a
pdb|3LNH|B Chain B, Crystal Structure Of E-Cadherin Ec12 W2a
Length = 213
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 163 FTVNRDTGVISVL 175
>pdb|1FF5|A Chain A, Structure Of E-Cadherin Double Domain
pdb|1FF5|B Chain B, Structure Of E-Cadherin Double Domain
Length = 219
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 45 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 103
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 104 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 163
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 164 FTVNRDTGVISVL 176
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 42 NARITYKLI-QDDKLVH-DTFHIMPNTGWLS-LKQPMDRETRDKFLLKIAACD-NGTPVS 97
NA I Y ++ QD +L H + F + +TG +S L +DRE+ + L + A D G +S
Sbjct: 144 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLS 203
Query: 98 TAYATVAINVLDANDN 113
T A I V D NDN
Sbjct: 204 TT-AKAVITVKDINDN 218
>pdb|3LNF|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14ew2a
pdb|3LNF|B Chain B, Crystal Structure Of E-Cadherin Ec12 K14ew2a
Length = 213
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 163 FTVNRDTGVISVL 175
>pdb|2QVF|B Chain B, Mouse E-cadherin Domains 1,2
Length = 213
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 163 FTVNRDTGVISVL 175
>pdb|1Q1P|A Chain A, E-Cadherin Activation
Length = 212
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 43 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 101
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 102 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 161
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 162 FTVNRDTGVISVL 174
>pdb|3LNG|A Chain A, Crystal Structure Of E-Cadherin Ec12 Aa Extension
pdb|3LNG|B Chain B, Crystal Structure Of E-Cadherin Ec12 Aa Extension
Length = 215
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 46 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 104
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 105 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 164
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 165 FTVNRDTGVISVL 177
>pdb|3LNE|A Chain A, Crystal Structure Of E-Cadherin Ec12 K14e
Length = 213
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 163 FTVNRDTGVISVL 175
>pdb|1EDH|A Chain A, E-Cadherin Domains 1 And 2 In Complex With Calcium
pdb|1EDH|B Chain B, E-Cadherin Domains 1 And 2 In Complex With Calcium
Length = 226
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 46 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 104
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 105 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 164
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 165 FTVNRDTGVISVL 177
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 42 NARITYKLI-QDDKLVH-DTFHIMPNTGWLS-LKQPMDRETRDKFLLKIAACD-NGTPVS 97
NA I Y ++ QD +L H + F + +TG +S L +DRE+ + L + A D G +S
Sbjct: 145 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLS 204
Query: 98 TAYATVAINVLDANDNDPKF 117
T A I V D NDN P F
Sbjct: 205 TT-AKAVITVKDINDNAPVF 223
>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain
pdb|3Q2V|B Chain B, Crystal Structure Of Mouse E-Cadherin Ectodomain
Length = 550
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 163 FTVNRDTGVISVL 175
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 42 NARITYKLI-QDDKLVH-DTFHIMPNTGWLS-LKQPMDRETRDKFLLKIAACD-NGTPVS 97
NA I Y ++ QD +L H + F + +TG +S L +DRE+ + L + A D G +S
Sbjct: 143 NAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLS 202
Query: 98 TAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALR 153
T A I V D NDN P F+ Y+ + EN + ++K TD+D + A +
Sbjct: 203 TT-AKAVITVKDINDNAPVFNPSTYQGQVPENEVNAR-IATLKVTDDDAPNTPAWK 256
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDK-----FLLKI 87
TA + DT + +ITY++ +D + I P TG + + MDRE + ++ I
Sbjct: 355 TAREPDTFMDQKITYRIWRD---TANWLEINPETGAIFTRAEMDREDAEHVKNSTYVALI 411
Query: 88 AACDNGTPVST 98
A D+G+P++T
Sbjct: 412 IATDDGSPIAT 422
>pdb|3Q2L|A Chain A, Mouse E-Cadherin Ec1-2 V81d Mutant
pdb|3Q2L|B Chain B, Mouse E-Cadherin Ec1-2 V81d Mutant
Length = 213
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHADSSNGEAVEDPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSIL 175
F +N +G S+L
Sbjct: 163 FTVNRDTGVISVL 175
>pdb|3Q2N|A Chain A, Mouse E-Cadherin Ec1-2 L175d Mutant
pdb|3Q2N|B Chain B, Mouse E-Cadherin Ec1-2 L175d Mutant
Length = 213
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 44 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 102
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLI------PSNTS 162
DN P+F+++ +E S+ E GT V V ATD D NAA+ Y+++ P
Sbjct: 103 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNM 162
Query: 163 FQINPFSGKKSI 174
F +N +G S+
Sbjct: 163 FTVNRDTGVISV 174
>pdb|1NCJ|A Chain A, N-Cadherin, Two-Domain Fragment
Length = 215
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKFLLKIAACD-NGTPVSTAYATVAINVLDANDNDPKFS 118
F I P +G LS+ +P+DRE +F L+ A D NG V V INV+D NDN P+F
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIV-INVIDMNDNRPEFL 109
Query: 119 KQDYEFSIEENLPRGTVVGSVKATDED--LASNAALRYSLI------PSNTSFQINPFSG 170
Q + S+ E GT V +V A D D A N LRY ++ PS F IN +G
Sbjct: 110 HQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETG 169
>pdb|2QVI|A Chain A, Crystal Structure Of N-Cadherin Domains Ec12
Length = 215
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKFLLKIAACD-NGTPVSTAYATVAINVLDANDNDPKFS 118
F I P +G LS+ +P+DRE +F L+ A D NG V V INV+D NDN P+F
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIV-INVIDMNDNRPEFL 109
Query: 119 KQDYEFSIEENLPRGTVVGSVKATDED--LASNAALRYSLI------PSNTSFQINPFSG 170
Q + S+ E GT V +V A D D A N LRY ++ PS F IN +G
Sbjct: 110 HQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETG 169
>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain
Length = 559
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 62/120 (51%), Gaps = 10/120 (8%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKFLLKIAACD-NGTPVSTAYATVAINVLDANDNDPKFS 118
F I P +G LS+ +P+DRE +F L+ A D NG V V INV+D NDN P+F
Sbjct: 51 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIV-INVIDMNDNRPEFL 109
Query: 119 KQDYEFSIEENLPRGTVVGSVKATDED--LASNAALRYSLI------PSNTSFQINPFSG 170
Q + S+ E GT V +V A D D A N LRY ++ PS F IN +G
Sbjct: 110 HQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETG 169
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 63/116 (54%), Gaps = 12/116 (10%)
Query: 65 NTGWLSLKQPMDRETRDKFLLKIAACDNGTPVSTAY-------ATVAINVLDANDNDPKF 117
N G +++ +P+D ET F+L +AA +N P++ ATV++ V+D N+N P F
Sbjct: 281 NDGLVTVVKPIDFETNRMFVLTVAA-ENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYF 338
Query: 118 SKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLI--PSNTSFQINPFSGK 171
+ EE L GT++ ++ A D D +RY+ + P+N +I+P +G+
Sbjct: 339 APNPKIIRQEEGLHAGTMLTTLTAQDPDRYMQQNIRYTKLSDPANW-LKIDPVNGQ 393
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 33 TAVDLDTGN--NARITYKLIQDDKLVH--DTFHIMPNTG-WLSLKQPMDRETRDKFLLKI 87
TA+D D N N + Y+++ + F I TG +++ +DRE ++ L I
Sbjct: 131 TAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLII 190
Query: 88 AACD-NGTPVS--TAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDE 144
A D G P + AT I V D NDN P+F+ + + EN +V ++ TD+
Sbjct: 191 QATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENR-VDVIVANLTVTDK 249
Query: 145 DL----ASNAALRYS 155
D A NAA R S
Sbjct: 250 DQPHTPAWNAAYRIS 264
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 11/123 (8%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRET----RDKFLLKIA 88
TA D D I Y + D + I P G ++ +DRE+ + +
Sbjct: 361 TAQDPDRYMQQNIRYTKLSDPA---NWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFL 417
Query: 89 ACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS 148
A DNG P + T+ I +LD NDN P+ Q+ E + E P ++ A D D+
Sbjct: 418 ASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEAE-TCETPEPNSI---NITALDYDIDP 473
Query: 149 NAA 151
NA
Sbjct: 474 NAG 476
>pdb|1SUH|A Chain A, Amino-Terminal Domain Of Epithelial Cadherin In The
Calcium Bound State, Nmr, 20 Structures
Length = 146
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDAN 111
DK F I TGWL + QP+DRE K++L A NG V V I V D N
Sbjct: 46 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGEAVEDPMEIV-ITVTDQN 104
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED 145
DN P+F+++ +E S+ E GT V V ATD D
Sbjct: 105 DNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDAD 138
>pdb|3K5R|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
pdb|3K5R|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1 Ec2
Length = 218
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 36 DLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGTP 95
D G+ R+T K + D TF I NTG +S+ + +DRET + L + D
Sbjct: 29 DRPEGSKFRLTGKGVDQDP--KGTFRINENTGSVSVTRTLDRETIATYQLYVETTDASGK 86
Query: 96 VSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED--LASNAALR 153
+ + V+D NDN P F + Y + E P GT V + A D D NA LR
Sbjct: 87 TLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNALLR 146
Query: 154 YSL------IPSNTSFQINPFSG 170
Y++ PS F I+P G
Sbjct: 147 YNIRQQTPDKPSPNMFYIDPEKG 169
>pdb|2O72|A Chain A, Crystal Structure Analysis Of Human E-Cadherin (1-213)
Length = 213
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKF-LLKIAACDNGTPVSTAYATVAINVLDANDNDPKFS 118
F I TGWL + +P+DRE + L A NG V + I V D NDN P+F+
Sbjct: 51 FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME-ILITVTDQNDNKPEFT 109
Query: 119 KQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSL------IPSNTSFQINPFS 169
++ ++ S+ E GT V V ATD D NAA+ Y++ +P F IN +
Sbjct: 110 QEVFKGSVMEGALPGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNT 169
Query: 170 GKKSIL 175
G S++
Sbjct: 170 GVISVV 175
>pdb|3K5S|A Chain A, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
pdb|3K5S|B Chain B, Crystal Structure Of Chicken T-Cadherin Ec1 Ec2
Length = 217
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 40 GNNARITYKLI-QDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGTPVST 98
G R++ K + QD K + F I +G +S+ +P+DRE + L++ D +
Sbjct: 32 GAKFRLSGKGVDQDPKGI---FRINEISGDVSVTRPLDREAIANYQLEVEVTDLSGKIID 88
Query: 99 AYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS--NAALRYSL 156
+ I+V+D NDN P F + Y + E P GT V + A D D S NA LRY++
Sbjct: 89 GPVRLDISVIDQNDNRPMFKEGPYVGHVMEGSPTGTTVMRMTAFDADDPSTDNALLRYNI 148
Query: 157 I------PSNTSFQINPFSG 170
+ PS F I+P G
Sbjct: 149 LKQTPTKPSPNMFYIDPEKG 168
>pdb|3UBH|A Chain A, Crystal Structure Of Drosophila N-cadherin Ec1-4
Length = 419
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Query: 59 TFHIMPNTGWLSLKQPMDRETRDK---FLLKIAACDNGTPVSTAYATVAINVLDANDNDP 115
TF+I P +G + L + +D E + + L + A ++ ST+ + I V D NDN P
Sbjct: 264 TFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTATEDSGGFSTS-VDLTIRVTDVNDNAP 322
Query: 116 KFSKQDYE-FSIEENLPRGTVVGSVKATDEDLASNAALRY 154
KF DY+ +++E++P GT + VKA D D SNA + Y
Sbjct: 323 KFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGSNAEIEY 362
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 2 VPCLFQILQVTAVDLDTGNNARITYKLIQDDTAVD 36
+P IL+V A+D D+G+NA I Y + D AVD
Sbjct: 338 IPLGTSILRVKAMDSDSGSNAEIEYLVSDDHFAVD 372
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 34 AVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFL-LKIAACDN 92
A+D D+G+NA I Y L+ DD D+ I+ N + +D + + + + A D
Sbjct: 349 AMDSDSGSNAEIEY-LVSDDHFAVDSNGIIVNN------KQLDADNNNAYYEFIVTAKDK 401
Query: 93 GTPVSTAYATVAI 105
G P + ATV +
Sbjct: 402 GEPPKSGVATVRV 414
>pdb|2YST|A Chain A, Solution Structure Of The Third Cadherin Domain From Human
Protocadherin 7
Length = 119
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 34 AVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNG 93
A DLD G N +I Y + V + +GWLS+ +DRE ++ + A D G
Sbjct: 38 AADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDRG 97
Query: 94 TPVSTAYATVAINVLDANDNDP 115
P T ATV +N+ D NDN P
Sbjct: 98 QPPKTDKATVVLNIKDENDNVP 119
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 111 NDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS----FQIN 166
NDN P+F K YE + EN GT + ++A D D+ N + Y + S +++
Sbjct: 8 NDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLD 67
Query: 167 PFSGKKSILY 176
SG S+L+
Sbjct: 68 ETSGWLSVLH 77
>pdb|3LND|A Chain A, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|B Chain B, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|C Chain C, Crystal Structure Of Cadherin-6 Ec12 W4a
pdb|3LND|D Chain D, Crystal Structure Of Cadherin-6 Ec12 W4a
Length = 207
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 6/118 (5%)
Query: 58 DTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN--GTPVSTAYATVAINVLDANDNDP 115
D F I NTG + + +DRE + ++L+ A + G PV + I + D NDN+P
Sbjct: 46 DLFIINENTGDIQATKRLDREEKPVYILRAQAVNRRTGRPVEPE-SEFIIKIHDINDNEP 104
Query: 116 KFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALRYSLIPSNTSFQINPFSG 170
F+K Y ++ E GT V V ATD D ++A + YS++ F + +G
Sbjct: 105 IFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGNSAKVVYSILQGQPYFSVESETG 162
Score = 33.9 bits (76), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 33 TAVDLDT---GNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQ-PMDRETRDKFLLKIA 88
TA D D GN+A++ Y ++Q F + TG + MDRE R+++ + I
Sbjct: 129 TATDADDPTYGNSAKVVYSILQGQPY----FSVESETGIIKTALLNMDRENREQYQVVIQ 184
Query: 89 ACDNGTPVSTAYATVAINV 107
A D G + T +N+
Sbjct: 185 AKDMGGQMGGLSGTTTVNI 203
>pdb|2EE0|A Chain A, Solution Structures Of The Ca Domain Of Human
Protocadherin 9
Length = 114
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 110 ANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRY 154
NDN P F + E I EN P GT V + ATD D+ SNA +RY
Sbjct: 7 GNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRY 51
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 22/109 (20%)
Query: 3 PCLFQILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHI 62
P ++Q+ A D D G+NA I Y + A T +L F +
Sbjct: 28 PVGTSVIQLHATDADIGSNAEIRY----------IFGAQVAPATKRL----------FAL 67
Query: 63 MPNTGWLSLKQPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDAN 111
TG +++++ +DRE + + A D + + A ATV INV D N
Sbjct: 68 NNTTGLITVQRSLDREETAIHKVTVLASDGSS--TPARATVTINVTDVN 114
>pdb|1NCH|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCH|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCI|B Chain B, Structural Basis Of Cell-Cell Adhesion By Cadherins
pdb|1NCG|A Chain A, Structural Basis Of Cell-Cell Adhesion By Cadherins
Length = 110
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKFLLKIAACD-NGTPVSTAYATVAINVLDANDNDPKF 117
F I P +G LS+ +P+DRE +F L+ A D NG V V INV+D NDN P+F
Sbjct: 53 FIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIV-INVIDMNDNRPEF 110
>pdb|2A4E|A Chain A, Crystal Structure Of Mouse Cadherin-11 Ec1-2
Length = 215
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 36 DLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGT- 94
D+D+G+ K I + F I +G + + +DRE R ++ L A D T
Sbjct: 28 DIDSGDG---NIKYILSGEGAGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDRDTN 84
Query: 95 -PVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNA 150
P+ + + V D NDN P+F + Y ++ E GT V V A+D D ++A
Sbjct: 85 RPLEPP-SEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGNSA 143
Query: 151 ALRYSLIPSNTSFQINPFSG 170
L YS++ F + +G
Sbjct: 144 KLVYSILEGQPYFSVEAQTG 163
>pdb|2WBX|A Chain A, Crystal Structure Of Mouse Cadherin-23 Ec1
Length = 102
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 17/79 (21%)
Query: 25 TYKLIQDDTAVDLDTGNNARITYKLIQD---DKLVHDT--------FHIMPNTGWLSLKQ 73
TY LI +DT V + +T L +D D LV F + P+TG + L+Q
Sbjct: 16 TYLLISEDTPV------GSSVTQLLARDMDNDPLVFGVSGEEASRFFAVEPDTGVVWLRQ 69
Query: 74 PMDRETRDKFLLKIAACDN 92
P+DRET+ +F ++ + D+
Sbjct: 70 PLDRETKSEFTVEFSVSDH 88
>pdb|4APX|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form I
pdb|4AQ8|C Chain C, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQ8|D Chain D, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2 Form Ii
pdb|4AQA|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2d124g And Protocadherin-15 Ec1-2 Form I
pdb|4AQE|B Chain B, Crystal Structure Of Deafness Associated Mutant Mouse
Cadherin-23 Ec1-2s70p And Protocadherin-15 Ec1-2 Form I
pdb|4AXW|B Chain B, Crystal Structure Of Mouse Cadherin-23 Ec1-2 And
Protocadherin-15 Ec1-2, Form I 2.2a
Length = 242
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 90 CDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVV-----GSVKATDE 144
C N + Y V I V D NDN P F + Y ++ E P GT + G ATD
Sbjct: 100 CVNKKVGTVIYHEVRIVVRDRNDNSPTFKHESYYATVNELTPVGTTIFTGFSGDNGATDI 159
Query: 145 DLASNAALRYSL------IPSNTSFQI 165
D N + Y + SN +F+I
Sbjct: 160 DDGPNGQIEYVIQYNPEDPTSNDTFEI 186
>pdb|3PPE|A Chain A, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
pdb|3PPE|B Chain B, Crystal Structure Of Chicken Ve-Cadherin Ec1-2
Length = 203
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 73 QPMDRETRDKFLLKIAACDNGTPVS-TAYATVAINVLDANDNDPKFSKQDYEFSIEENLP 131
+ +DRE + ++ L D S + I V D NDN P F ++ + S+ E
Sbjct: 59 ERLDREKKAEYELTAHIIDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSR 118
Query: 132 RGTVVGSVKATDED---LASNAALRYSLIPSNTSFQIN 166
GT V V A D D +A +A + Y +I N F ++
Sbjct: 119 LGTSVTKVTAEDADDPTVAGHATVTYQIIKGNEYFTVD 156
>pdb|2OMW|B Chain B, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 105
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 53 DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLL-KIAACDNGTPVSTAYATVAINVLDA 110
DK F I TGWL + QP+DRE K++L A NG V V I V DA
Sbjct: 48 DKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAVSSNGNAVEDPMEIV-ITVTDA 105
>pdb|2X2U|A Chain A, First Two Cadherin-Like Domains From Human Ret
Length = 246
Score = 33.1 bits (74), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 45 ITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKF-LLKIAACDNGTPVSTAYATV 103
+ Y+L++ + L F P++ +S + +DRE R+K+ L+ + G
Sbjct: 174 VAYRLLEGEGL---PFRSAPDSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPF 230
Query: 104 AINVLDANDNDPKF 117
+ V D +D+ P+F
Sbjct: 231 PVTVYDEDDSAPEF 244
>pdb|2OMX|B Chain B, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 108
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKF-LLKIAACDNGTPVSTAYATVAINVLDANDN 113
F I TGWL + +P+DRE + L A NG V + I V D NDN
Sbjct: 55 FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVEDPME-ILITVTDQNDN 108
>pdb|2YQG|A Chain A, Solution Structure Of The First Cadherin Domain From Human
Desmoglein-2
Length = 123
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 36 DLDTGNNARITYKLIQDDKLVHDTFHIM---PNTGWLSLKQPMDRETRDKFLLKIAACD- 91
DL +ITYK + F I +TG L++ +DRE FLL A D
Sbjct: 37 DLAEERGLKITYKYTGKG-ITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDA 95
Query: 92 NGTPVSTAYATVAINVLDANDNDPKFSK 119
G V + I VLD NDN+P F++
Sbjct: 96 RGNNVEKPLE-LRIKVLDINDNEPVFTQ 122
>pdb|3K6F|A Chain A, Crystal Structure Of Mouse T-Cadherin Ec1
pdb|3K6F|B Chain B, Crystal Structure Of Mouse T-Cadherin Ec1
Length = 100
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 36 DLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACD 91
D G+ R+T K + D TF I NTG +S+ + +DRET + L + D
Sbjct: 29 DRPEGSKFRLTGKGVDQDP--KGTFRINENTGSVSVTRTLDRETIATYQLYVETTD 82
>pdb|2V37|A Chain A, Solution Structure Of The N-Terminal Extracellular Domain
Of Human T-Cadherin
Length = 105
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 44 RITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGTPVSTAYATV 103
R+T K + D+ F I NTG +S+ + +DRE + L + D +
Sbjct: 36 RLTGKGV--DQEPKGIFRINENTGSVSVTRTLDREVIAVYQLFVETTDVNGKTLEGPVPL 93
Query: 104 AINVLDANDNDP 115
+ V+D NDN P
Sbjct: 94 EVIVIDQNDNRP 105
>pdb|2YIK|A Chain A, Catalytic Domain Of Clostridium Thermocellum Celt
Length = 611
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 96 VSTAYATVAINVLDANDNDPKFSKQ--DYE---FSIEENLPRGTVVG 137
+S A++AIN ++ D DP+++ + DY F E P+G V G
Sbjct: 219 ISATAASLAINYMNFKDTDPQYAAKSLDYAKALFDFAEKNPKGVVQG 265
>pdb|4JO8|A Chain A, Crystal Structure Of The Activating Ly49h Receptor In
Complex With M157 (g1f Strain)
Length = 269
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 79 TRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSK 119
TRD F + + DNG PV V D D DPK K
Sbjct: 25 TRDGFHKRTISVDNGRPVV---------VWDGGDKDPKICK 56
>pdb|2DFA|A Chain A, Crystal Structure Of Lactam Utilization Protein From
Thermus Thermophilus Hb8
Length = 250
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 61 HIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGTPVSTAYATV 103
H+ P+ G L LK DRET L + A D G P+ TV
Sbjct: 107 HVKPH-GALYLKACRDRETARAIALAVKAFDPGLPLVVLPGTV 148
>pdb|3FF8|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF8|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 101
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKF-LLKIAACDNGTPVS 97
F I TGWL + +P+DRE + L A NG V
Sbjct: 52 FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVE 90
>pdb|3FF7|A Chain A, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
pdb|3FF7|B Chain B, Structure Of Nk Cell Receptor Klrg1 Bound To E-Cadherin
Length = 100
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKF-LLKIAACDNGTPVS 97
F I TGWL + +P+DRE + L A NG V
Sbjct: 52 FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAVE 90
>pdb|1O6S|B Chain B, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|2OMV|B Chain B, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMY|B Chain B, Crystal Structure Of Inla S192n/hec1 Complex
pdb|2OMT|B Chain B, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
pdb|2OMU|B Chain B, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
pdb|2OMZ|B Chain B, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 105
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKF-LLKIAACDNGTPV 96
F I TGWL + +P+DRE + L A NG V
Sbjct: 55 FIIERETGWLKVTEPLDRERIATYTLFSHAVSSNGNAV 92
>pdb|3U1K|A Chain A, Crystal Structure Of Human Pnpase
pdb|3U1K|C Chain C, Crystal Structure Of Human Pnpase
pdb|3U1K|B Chain B, Crystal Structure Of Human Pnpase
pdb|3U1K|D Chain D, Crystal Structure Of Human Pnpase
Length = 630
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 87 IAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEF 124
+A D+G P+S+A A VAI ++ D + K +DY
Sbjct: 454 LALMDSGVPISSAVAGVAIGLVTKTDPE-KGEIEDYRL 490
Database: pdbaa
Posted date: Jul 29, 2013 4:35 PM
Number of letters in database: 15,674,573
Number of sequences in database: 65,211
Lambda K H
0.318 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,668,176
Number of Sequences: 65211
Number of extensions: 233018
Number of successful extensions: 567
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 78
length of query: 184
length of database: 15,674,573
effective HSP length: 93
effective length of query: 91
effective length of database: 9,609,950
effective search space: 874505450
effective search space used: 874505450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)