RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8617
(184 letters)
>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain. Cadherins
are glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers.
Length = 98
Score = 86.2 bits (214), Expect = 1e-22
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
+A D D+G N +TY ++ + F I P+TG ++ +P+DRE + + L + A D
Sbjct: 20 SATDPDSGENGEVTYSIVSGN--EDGLFSIDPSTGEITTAKPLDREEQSSYTLTVTATDG 77
Query: 93 GTPVSTAYATVAINVLDANDN 113
G P ++ ATV I VLD NDN
Sbjct: 78 GGPPLSSTATVTITVLDVNDN 98
Score = 59.6 bits (145), Expect = 3e-12
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 122 YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
YE S+ EN P GTVV +V ATD D N + YS++ N F I+P +G
Sbjct: 2 YEVSVPENAPPGTVVLTVSATDPDSGENGEVTYSIVSGNEDGLFSIDPSTG 52
>gnl|CDD|214520 smart00112, CA, Cadherin repeats. Cadherins are glycoproteins
involved in Ca2+-mediated cell-cell adhesion. Cadherin
domains occur as repeats in the extracellular regions
which are thought to mediate cell-cell contact when
bound to calcium.
Length = 81
Score = 85.9 bits (213), Expect = 1e-22
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
+A D D+G N ++TY ++ + F I P TG ++ +P+DRE + ++ L + A D
Sbjct: 1 SATDADSGENGKVTYSILSGN--DDGLFSIDPETGEITTTKPLDREEQPEYTLTVEATDG 58
Query: 93 GTPVSTAYATVAINVLDANDNDP 115
G P ++ ATV I VLD NDN P
Sbjct: 59 GGPPLSSTATVTITVLDVNDNAP 81
Score = 34.2 bits (79), Expect = 0.005
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 140 KATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
ATD D N + YS++ N F I+P +G
Sbjct: 1 SATDADSGENGKVTYSILSGNDDGLFSIDPETG 33
>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain.
Length = 92
Score = 70.4 bits (173), Expect = 2e-16
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
TA D D G N RI Y ++ F I P+TG LS +P+DRE+ ++ L + A D+
Sbjct: 19 TATDADLGPNGRIFYSILGGG--PGGWFRIDPDTGDLSTTKPLDRESIGEYELTVLATDS 76
Query: 93 GTPVSTAYATVAINVL 108
G P ++ TV I VL
Sbjct: 77 GGPPLSSTTTVTITVL 92
Score = 53.1 bits (128), Expect = 7e-10
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 122 YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
Y S+ EN P GT V +V ATD DL N + YS++ F+I+P +G
Sbjct: 1 YSASVPENAPVGTEVLTVTATDADLGPNGRIFYSILGGGPGGWFRIDPDTG 51
>gnl|CDD|206635 cd00031, CA_like, Cadherin repeat-like domain. Cadherins are
glycoproteins involved in Ca2+-mediated cell-cell
adhesion. The cadherin repeat domains occur as tandem
repeats in the extracellular regions, which are thought
to mediate cell-cell contact when bound to calcium. They
play numerous roles in cell fate, signalling,
proliferation, differentiation, and migration; members
include E-, N-, P-, T-, VE-, CNR-, proto-, and
FAT-family cadherin, desmocollin, and desmoglein, a
large variety of domain architectures with varying
repeat copy numbers. Cadherin-repeat containing proteins
exist as monomers, homodimers, or heterodimers. This
family also includes the cadherin-like repeats of
extracellular alpha-dystroglycan.
Length = 98
Score = 40.0 bits (93), Expect = 6e-05
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDN 113
H P++G L + +DRE + + ++A G V + +I V D NDN
Sbjct: 45 LHWEPHSGILEGLEKLDREDKGVHYISVSAASLGANVPQTSSVFSIEVYDENDN 98
>gnl|CDD|238990 cd02033, BchX, Chlorophyllide reductase converts chlorophylls into
bacteriochlorophylls by reducing the chlorin B-ring.
This family contains the X subunit of this three-subunit
enzyme. Sequence and structure similarity between bchX,
protochlorophyllide reductase L subunit (bchL and chlL)
and nitrogenase Fe protein (nifH gene) suggest their
functional similarity. Members of the BchX family serve
as the unique electron donors to their respective
catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase
component 1). Mechanistically, they hydrolyze ATP and
transfer electrons through a Fe4-S4 cluster.
Length = 329
Score = 33.8 bits (77), Expect = 0.039
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 74 PMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRG 133
P D E R K GT + +A NV +A PK QD + + G
Sbjct: 239 PADEELRRKSAAYQIVGRPGTTWGPLFEQLATNVAEAPPMRPKPLSQDELLGLFSSESTG 298
Query: 134 TVVGSVKATDEDL-ASNAALRYSL 156
V ATD+D+ NAA++ SL
Sbjct: 299 RDVVLEPATDQDMRGKNAAVKKSL 322
>gnl|CDD|214999 smart01055, Cadherin_pro, Cadherin prodomain like. Cadherins are a
family of proteins that mediate calcium dependent
cell-cell adhesion. They are activated through cleavage
of a prosequence in the late Golgi. This domain
corresponds to the folded region of the prosequence, and
is termed the prodomain. The prodomain shows structural
resemblance to the cadherin domain, but lacks all the
features known to be important for cadherin-cadherin
interactions.
Length = 87
Score = 31.5 bits (72), Expect = 0.054
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 114 DPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTSFQINP 167
P FS++ Y F + +L G +G V E+ +A L++ S+ F++
Sbjct: 2 KPGFSEEKYTFHVPSHLEAGQPLGRVNF--EECLGSARLQFE--SSDPDFRVLE 51
>gnl|CDD|233686 TIGR02016, BchX, chlorophyllide reductase iron protein subunit X.
This model represents the X subunit of the three-subunit
enzyme, (bacterio)chlorophyllide reductase. This enzyme
is responsible for the reduction of the chlorin B-ring
and is closely related to the protochlorophyllide
reductase complex which reduces the D-ring. Both of
these complexes in turn are homologous to nitrogenase.
This subunit is homologous to the nitrogenase component
II, or "iron" protein [Energy metabolism,
Photosynthesis].
Length = 296
Score = 31.8 bits (72), Expect = 0.19
Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 74 PMDRETRDKFLLKIAACDNGTPVSTA-YATVAINVLDANDNDPKFSKQDYEFSIEENLPR 132
P D E R K L + TP + +A NV DA P+ D ++ E LP
Sbjct: 214 PADEELRRKSLAYQIVGSHATPRFGKLFEELAGNVADAPPLRPRPLSPDALLALFETLPE 273
Query: 133 GTVVGSVKATDEDL-ASNAALR 153
VV V AT+EDL SNAA +
Sbjct: 274 TRVVDLVGATEEDLRGSNAAAK 295
>gnl|CDD|220006 pfam08758, Cadherin_pro, Cadherin prodomain like. Cadherins are a
family of proteins that mediate calcium dependent
cell-cell adhesion. They are activated through cleavage
of a prosequence in the late Golgi. This domain
corresponds to the folded region of the prosequence, and
is termed the prodomain. The prodomain shows structural
resemblance to the cadherin domain, but lacks all the
features known to be important for cadherin-cadherin
interactions.
Length = 90
Score = 29.2 bits (66), Expect = 0.43
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 115 PKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTSFQINP 167
P FS++ Y F + L G +G VK D ++Y S+ F++N
Sbjct: 4 PGFSEEVYTFLVPRRLEEGQPLGRVKF--NDCKGRRRIQYE--SSDPDFKVNE 52
>gnl|CDD|173383 PTZ00089, PTZ00089, transketolase; Provisional.
Length = 661
Score = 28.1 bits (63), Expect = 3.6
Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 23/113 (20%)
Query: 84 LLKIAACDNGTPVSTAYA-------TVAINVLDANDNDP-KFSKQD------YEFSIEEN 129
LL I D GT S AYA T I L + P S + Y N
Sbjct: 489 LLVIRPAD-GTETSGAYALALANAKTPTILCLSRQNTPPLPGSSIEGVLKGAYIVVDFTN 547
Query: 130 LPRGTVVGS-------VKATDEDLASNAALRYSLIPSNTSFQINPFSGKKSIL 175
P+ +V S V+A L+ +R +P F ++S+L
Sbjct: 548 SPQLILVASGSEVSLCVEAAK-ALSKELNVRVVSMPCWELFDQQSEEYQQSVL 599
>gnl|CDD|224018 COG1093, SUI2, Translation initiation factor 2, alpha subunit
(eIF-2alpha) [Translation, ribosomal structure and
biogenesis].
Length = 269
Score = 26.9 bits (60), Expect = 6.3
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 11/47 (23%)
Query: 69 LSLKQPMDRETRDKF-----------LLKIAACDNGTPVSTAYATVA 104
LSLK+ + + R K LL++AA G + AY V
Sbjct: 80 LSLKRVTEHQRRKKIQEWKKEQKADKLLELAAEKLGKDLEEAYEEVG 126
>gnl|CDD|233357 TIGR01322, scrB_fam, sucrose-6-phosphate hydrolase. [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 445
Score = 26.6 bits (59), Expect = 8.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 57 HDTFHIMPNTGWL 69
TFHI P TG L
Sbjct: 14 RPTFHIQPQTGLL 26
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.133 0.385
Gapped
Lambda K H
0.267 0.0746 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,002,754
Number of extensions: 806927
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's gapped: 613
Number of HSP's successfully gapped: 21
Length of query: 184
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 93
Effective length of database: 6,901,388
Effective search space: 641829084
Effective search space used: 641829084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)