RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8617
(184 letters)
>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell
adhesion, cleavage on PAIR of basic residues,
glycoprotein, membrane; 3.01A {Mus musculus} SCOP:
b.1.6.1 b.1.6.1 PDB: 1ncj_A
Length = 215
Score = 147 bits (373), Expect = 3e-45
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ D N + Y + D+ F I P +G LS+ +P+DRE +F L+ A
Sbjct: 22 VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 81
Query: 91 DNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS-- 148
D + INV+D NDN P+F Q + S+ E GT V +V A D D +
Sbjct: 82 DINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNAL 141
Query: 149 NAALRYSLI------PSNTSFQINPFSG 170
N LRY ++ PS F IN +G
Sbjct: 142 NGMLRYRILSQAPSTPSPNMFTINNETG 169
Score = 67.4 bits (165), Expect = 2e-14
Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 25/108 (23%)
Query: 8 ILQVTAVDLD--TGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPN 65
++ VTA+D D N + Y+++ + + F I
Sbjct: 127 VMTVTAIDADDPNALNGMLRYRILSQAPSTPSP-------------------NMFTINNE 167
Query: 66 TGWL-SLKQPMDRETRDKFLLKIAACDNGTPVS---TAYATVAINVLD 109
TG + ++ +DRE ++ L I A D + + AT I V D
Sbjct: 168 TGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
Score = 46.6 bits (111), Expect = 8e-07
Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 122 YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPFSG 170
++ EN G + D N +LRYS+ P F INP SG
Sbjct: 5 PPINLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISG 58
>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB:
1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A*
3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A
Length = 213
Score = 145 bits (367), Expect = 2e-44
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ + ++ Y + DK F I TGWL + QP+DRE K++L A
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 91 DNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LA 147
+ + I V D NDN P+F+++ +E S+ E GT V V ATD D
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 148 SNAALRYSLIPSNTS------FQINPFSG 170
NAA+ Y+++ + F +N +G
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Score = 73.9 bits (182), Expect = 9e-17
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQ--DDKLVHDTFHIMPN 65
+++V+A D D N NA I Y ++ + + F + +
Sbjct: 127 VMKVSATDADDDVN------------------TYNAAIAYTIVSQDPELPHKNMFTVNRD 168
Query: 66 TGWLS-LKQPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLD 109
TG +S L +DRE+ + L + A D + A I V D
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213
Score = 45.4 bits (108), Expect = 2e-06
Identities = 10/55 (18%), Positives = 16/55 (29%), Gaps = 7/55 (12%)
Query: 122 YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPFSG 170
S EN G ++ + + YS+ P F I +G
Sbjct: 5 AAISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 58
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 145 bits (367), Expect = 2e-44
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 8/138 (5%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
A D+D N + + + ++ F + P+TG + L+QP+DRET+ +F ++ + D+
Sbjct: 33 LARDMD---NDPLVFGVSGEE--ASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDH 87
Query: 93 GTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAAL 152
++ V I V D NDN P F Q Y I EN P GT + V ATD DL + ++
Sbjct: 88 QGVIT---RKVNIQVGDVNDNAPTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSV 144
Query: 153 RYSLIPSNTSFQINPFSG 170
YS P + F I+ G
Sbjct: 145 LYSFQPPSPFFAIDSARG 162
Score = 81.1 bits (201), Expect = 1e-19
Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 26/108 (24%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTG 67
I V A D D G + Y F I G
Sbjct: 128 IFIVNATDPDLGAGGSVLYSFQPPS-------------------------PFFAIDSARG 162
Query: 68 WLSLKQPMDRETRDKFLLKIAACDNGTPVS-TAYATVAINVLDANDND 114
+++ Q +D E + L + A D + A +AI + D D D
Sbjct: 163 IVTVIQELDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDMD 210
Score = 60.7 bits (148), Expect = 6e-12
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 111 NDNDPKFSKQDYE--FSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQIN 166
+ P F+ ++ I E+ P G+ V + A D D N L + + S F +
Sbjct: 2 VNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMD---NDPLVFGVSGEEASRFFAVE 58
Query: 167 PFSG 170
P +G
Sbjct: 59 PDTG 62
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB:
3k5s_A
Length = 218
Score = 143 bits (362), Expect = 2e-43
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 10/146 (6%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
D G+ R+T K + D+ TF I NTG +S+ + +DRET + L + D
Sbjct: 26 VDSDRPEGSKFRLTGKGV--DQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDA 83
Query: 93 GTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS--NA 150
+ + V+D NDN P F + Y + E P GT V + A D D + NA
Sbjct: 84 SGKTLEGPVPLEVIVIDQNDNRPIFREGPYIGHVMEGSPTGTTVMRMTAFDADDPATDNA 143
Query: 151 ALRYSLI------PSNTSFQINPFSG 170
LRY++ PS F I+P G
Sbjct: 144 LLRYNIRQQTPDKPSPNMFYIDPEKG 169
Score = 62.0 bits (151), Expect = 2e-12
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 28/111 (25%)
Query: 8 ILQVTAVDLD--TGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPN 65
++++TA D D +NA + Y + Q DK + F+I P
Sbjct: 127 VMRMTAFDADDPATDNALLRYNIRQQTP-------------------DKPSPNMFYIDPE 167
Query: 66 TGWLSLKQP---MDRETRD--KFLLKIAACDNGTPVS--TAYATVAINVLD 109
G + +DRET + K+ L I A D T AT I + D
Sbjct: 168 KGDIVTVVSPALLDRETLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218
Score = 43.1 bits (102), Expect = 1e-05
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 124 FSIEEN--LPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
I EN P VG V +D S L + + F+IN +G
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTG 58
>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane,
transmembr; 2.82A {Mus musculus}
Length = 207
Score = 140 bits (355), Expect = 1e-42
Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 7/142 (4%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
D D G+ + Y L D D F I NTG + + +DRE + ++L+ A +
Sbjct: 24 LHSDQDRGDG-SLKYILSGDG--AGDLFIINENTGDIQATKRLDREEKPVYILRAQAVNR 80
Query: 93 GTPVS-TAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LAS 148
T + I + D NDN+P F+K Y ++ E GT V V ATD D +
Sbjct: 81 RTGRPVEPESEFIIKIHDINDNEPIFTKDVYTATVPEMADVGTFVVQVTATDADDPTYGN 140
Query: 149 NAALRYSLIPSNTSFQINPFSG 170
+A + YS++ F + +G
Sbjct: 141 SAKVVYSILQGQPYFSVESETG 162
Score = 72.7 bits (179), Expect = 2e-16
Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 25/105 (23%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTG 67
++QVTA D D D GN+A++ Y ++Q F + TG
Sbjct: 125 VVQVTATDAD------------------DPTYGNSAKVVYSILQGQ----PYFSVESETG 162
Query: 68 WLSLKQ-PMDRETRDKFLLKIAACDNGTPVS--TAYATVAINVLD 109
+ MDRE R+++ + I A D G + + TV I + D
Sbjct: 163 IIKTALLNMDRENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207
Score = 44.6 bits (106), Expect = 3e-06
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 122 YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIP--SNTSFQINPFSG 170
F +EE +D+D + +L+Y L + F IN +G
Sbjct: 6 QFFLLEEYTGSDYQYVGKLHSDQD-RGDGSLKYILSGDGAGDLFIINENTG 55
>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus
musculus}
Length = 215
Score = 140 bits (356), Expect = 1e-42
Identities = 39/142 (27%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
D+D+G+ I Y L + F I +G + + +DRE R ++ L A D
Sbjct: 25 LHSDIDSGDG-NIKYILSGEG--AGTIFVIDDKSGNIHATKTLDREERAQYTLMAQAVDR 81
Query: 93 GTPVS-TAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LAS 148
T + + V D NDN P+F + Y ++ E GT V V A+D D +
Sbjct: 82 DTNRPLEPPSEFIVKVQDINDNPPEFLHEIYHANVPERSNVGTSVIQVTASDADDPTYGN 141
Query: 149 NAALRYSLIPSNTSFQINPFSG 170
+A L YS++ F + +G
Sbjct: 142 SAKLVYSILEGQPYFSVEAQTG 163
Score = 86.2 bits (214), Expect = 2e-21
Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 1 MVPCLFQILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTF 60
++QVTA D D D GN+A++ Y +++ F
Sbjct: 119 RSNVGTSVIQVTASDAD------------------DPTYGNSAKLVYSILEGQ----PYF 156
Query: 61 HIMPNTGWLSLKQP-MDRETRDKFLLKIAACDNG--TPVSTAYATVAINVLDANDNDPK 116
+ TG + P MDRE ++++ + I A D G + V I + D +D K
Sbjct: 157 SVEAQTGIIRTALPNMDREAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK 215
Score = 45.0 bits (107), Expect = 3e-06
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 122 YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIP--SNTSFQINPFSG 170
F IEE V+ +D D + + ++Y L + T F I+ SG
Sbjct: 7 QFFVIEEYTGPDPVLVGRLHSDID-SGDGNIKYILSGEGAGTIFVIDDKSG 56
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain,
beta barrel, IG-domain L domain swapped dimer interface;
2.10A {Gallus gallus}
Length = 203
Score = 138 bits (350), Expect = 7e-42
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 38 DTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGT-PV 96
+ N Y + + + F + G + + +DRE + ++ L D
Sbjct: 26 SSVGNKNAMYIIEGES--ANTIFKVQGYDGDIYAFERLDREKKAEYELTAHIIDRRNNRS 83
Query: 97 STAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LASNAALR 153
+ I V D NDN P F ++ + S+ E GT V V A D D +A +A +
Sbjct: 84 LEPPSKFIIKVSDINDNAPIFVQKIFNGSVPEMSRLGTSVTKVTAEDADDPTVAGHATVT 143
Query: 154 YSLIPSNTSFQINPFSG 170
Y +I N F ++
Sbjct: 144 YQIIKGNEYFTVDDSGV 160
Score = 76.2 bits (188), Expect = 9e-18
Identities = 23/110 (20%), Positives = 45/110 (40%), Gaps = 23/110 (20%)
Query: 1 MVPCLFQILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTF 60
M + +VTA D D D +A +TY++I+ + + F
Sbjct: 116 MSRLGTSVTKVTAEDAD------------------DPTVAGHATVTYQIIKGN----EYF 153
Query: 61 HIMPNTGWLSLKQPMDRETRDKFLLKIAACDN-GTPVSTAYATVAINVLD 109
+ + + + +DRE++ + + + A D G ++ ATV I + D
Sbjct: 154 TVDDSGVIFTARADLDRESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203
Score = 35.4 bits (82), Expect = 0.005
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 124 FSIEENL--PRGTVVGSVKATDEDLASNAALRYSLI--PSNTSFQINPFSG 170
I E + P VG + ++ N Y + +NT F++ + G
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSV----GNKNAMYIIEGESANTIFKVQGYDG 53
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 136 bits (344), Expect = 4e-38
Identities = 44/149 (29%), Positives = 67/149 (44%), Gaps = 11/149 (7%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ + ++ Y + DK F I TGWL + QP+DRE K++L A
Sbjct: 22 VQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDREAIAKYILYSHAV 81
Query: 91 DNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LA 147
+ + I V D NDN P+F+++ +E S+ E GT V V ATD D
Sbjct: 82 SSNGEAVEDPMEIVITVTDQNDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNT 141
Query: 148 SNAALRYSLI------PSNTSFQINPFSG 170
NAA+ Y+++ P F +N +G
Sbjct: 142 YNAAIAYTIVSQDPELPHKNMFTVNRDTG 170
Score = 125 bits (315), Expect = 4e-34
Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 14/148 (9%)
Query: 33 TAVDLDTGNNA--RITYKLIQDDKLVHDTFHIMP----NTGWLSLKQPMDRETRDKFLLK 86
D D N + Y ++ D F ++ N G L + +D E + +++L
Sbjct: 243 KVTDDDAPNTPAWKAVYTVVNDP---DQQFVVVTDPTTNDGILKTAKGLDFEAKQQYILH 299
Query: 87 IAACDNGT---PVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATD 143
+ + + + ATV ++V+D N+ P F + + E+ G + S A +
Sbjct: 300 VRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFMPAERRVEVPEDFGVGQEITSYTARE 358
Query: 144 EDLASNAALRYSLIPSNTS-FQINPFSG 170
D + + Y + + +INP +G
Sbjct: 359 PDTFMDQKITYRIWRDTANWLEINPETG 386
Score = 123 bits (310), Expect = 2e-33
Identities = 40/164 (24%), Positives = 68/164 (41%), Gaps = 25/164 (15%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDD--KLVHDTFHIMPN 65
+++V+A D D N NA I Y ++ D + F + +
Sbjct: 127 VMKVSATDADDDVN------------------TYNAAIAYTIVSQDPELPHKNMFTVNRD 168
Query: 66 TGWLS-LKQPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEF 124
TG +S L +DRE+ + L + A D + A I V D NDN P F+ Y+
Sbjct: 169 TGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTYQG 228
Query: 125 SIEENLPRGTVVGSVKATDEDLASNAALR--YSLIPSNT-SFQI 165
+ EN + ++K TD+D + A + Y+++ F +
Sbjct: 229 QVPENEV-NARIATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVV 271
Score = 108 bits (273), Expect = 3e-28
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 17/152 (11%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRET-----RDKFLLKI 87
TA + DT + +ITY++ +D + I P TG + + MDRE ++ I
Sbjct: 355 TAREPDTFMDQKITYRIWRDTA---NWLEINPETGAIFTRAEMDREDAEHVKNSTYVALI 411
Query: 88 AACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLA 147
A D+G+P++T T+ + +LD NDN P ++ +F P + D DL
Sbjct: 412 IATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNMQFCQRNPQPHI-----ITILDPDLP 466
Query: 148 SNAA-LRYSLIPSNT---SFQINPFSGKKSIL 175
N + L + + + N + + IL
Sbjct: 467 PNTSPFTAELTHGASVNWTIEYNDAAQESLIL 498
Score = 70.4 bits (173), Expect = 9e-15
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 4/91 (4%)
Query: 33 TAVDLDTGNNA-RITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACD 91
T +D D N T +L V+ T + QP ++ + + D
Sbjct: 459 TILDPDLPPNTSPFTAELTHGAS-VNWTIEYNDAAQESLILQPRKDLEIGEYKIHLKLAD 517
Query: 92 NGTPVSTAYATVAINVLDANDNDPKFSKQDY 122
N T+ ++V D K +
Sbjct: 518 NQNKDQV--TTLDVHVCDCEGTVNNCMKAHH 546
Score = 38.8 bits (91), Expect = 5e-04
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 124 FSIEENLPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPFSG 170
S EN G ++ + + YS+ P F I +G
Sbjct: 7 ISCPENEK-GEFPKNLVQIKSNRDKETKVFYSITGQGADKPPVGVFIIERETG 58
>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A
{Mus musculus}
Length = 559
Score = 136 bits (344), Expect = 5e-38
Identities = 47/148 (31%), Positives = 67/148 (45%), Gaps = 10/148 (6%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ D N + Y + D+ F I P +G LS+ +P+DRE +F L+ A
Sbjct: 22 VRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 81
Query: 91 DNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS-- 148
D + INV+D NDN P+F Q + S+ E GT V +V A D D +
Sbjct: 82 DINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNAL 141
Query: 149 NAALRYSLI------PSNTSFQINPFSG 170
N LRY ++ PS F IN +G
Sbjct: 142 NGMLRYRILSQAPSTPSPNMFTINNETG 169
Score = 128 bits (325), Expect = 2e-35
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 16/152 (10%)
Query: 33 TAVDLDTGNNA--RITYKLIQDDKLVHDTFHIMP----NTGWLSLKQPMDRETRDKFLLK 86
T D D + Y++ D F I+ N G +++ +P+D ET F+L
Sbjct: 245 TVTDKDQPHTPAWNAAYRISGGDP--TGRFAILTDPNSNDGLVTVVKPIDFETNRMFVLT 302
Query: 87 IAACDNG------TPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVK 140
+AA + + ATV++ V+D N+N P F+ EE L GT++ ++
Sbjct: 303 VAAENQVPLAKGIQHPPQSTATVSVTVIDVNEN-PYFAPNPKIIRQEEGLHAGTMLTTLT 361
Query: 141 ATDEDLASNAALRYSLIPSNTS-FQINPFSGK 171
A D D +RY+ + + +I+P +G+
Sbjct: 362 AQDPDRYMQQNIRYTKLSDPANWLKIDPVNGQ 393
Score = 118 bits (297), Expect = 1e-31
Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 33 TAVDLD--TGNNARITYKLIQDD--KLVHDTFHIMPNTGWLS-LKQPMDRETRDKFLLKI 87
TA+D D N + Y+++ + F I TG + + +DRE ++ L I
Sbjct: 131 TAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLII 190
Query: 88 AACDNGTPVS---TAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDE 144
A D + + AT I V D NDN P+F+ + + EN +V ++ TD+
Sbjct: 191 QATDMEGNPTYGLSNTATAVITVTDVNDNPPEFTAMTFYGEVPENRV-DVIVANLTVTDK 249
Query: 145 DLASNAALR--YSLIPSNTS--FQINP 167
D A Y + + + F I
Sbjct: 250 DQPHTPAWNAAYRISGGDPTGRFAILT 276
Score = 108 bits (272), Expect = 4e-28
Identities = 38/147 (25%), Positives = 58/147 (39%), Gaps = 16/147 (10%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRET----RDKFLLKIA 88
TA D D I Y + D + I P G ++ +DRE+ + +
Sbjct: 361 TAQDPDRYMQQNIRYTKLSDPA---NWLKIDPVNGQITTIAVLDRESPNVKNNIYNATFL 417
Query: 89 ACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS 148
A DNG P + T+ I +LD NDN P+ E E ++ + A D D+
Sbjct: 418 ASDNGIPPMSGTGTLQIYLLDINDNAPQVLP--QEAETCETPEPNSIN--ITALDYDIDP 473
Query: 149 NAA-LRYSLIPS----NTSFQINPFSG 170
NA + L S ++ IN +G
Sbjct: 474 NAGPFAFDLPLSPVTIKRNWTINRLNG 500
Score = 74.3 bits (183), Expect = 4e-16
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Query: 33 TAVDLDTGNNA-RITYKLIQDDKLVHDTFHIMPNTG-WLSLKQPMDRETRDKFLLKIAAC 90
TA+D D NA + L + + I G + L + + + I
Sbjct: 465 TALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEAGIYEVPIIIT 524
Query: 91 DNGTPVSTAYATVAINVLDANDNDPKFSKQDYEF 124
D+G P + + + + V + N +
Sbjct: 525 DSGNPPKSNISILRVKVCQCDSNGDCTDVHHHHH 558
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 124 FSIEENLPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPFSGK 171
++ EN G + D N +LRYS+ P F INP SG+
Sbjct: 7 INLPENSR-GPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQ 59
>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster}
PDB: 3ubg_A
Length = 316
Score = 132 bits (333), Expect = 5e-38
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
A D DT +N I Y +++D F + +G + + + +++L + A D
Sbjct: 131 QARDPDTDHN--IHYFIVRDR--TGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ 186
Query: 93 GTPV----STAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS 148
V + ++++ P+F YE I EN + + + S+KA
Sbjct: 187 NGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA--- 242
Query: 149 NAALRYSLIPS---NTSFQINPFSG 170
+ +RY+L +F I P SG
Sbjct: 243 DREIRYTLKAQGQGAGTFNIGPTSG 267
Score = 125 bits (316), Expect = 1e-35
Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 27/175 (15%)
Query: 6 FQILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPN 65
++ + D + ++L ++ + T+K+ D+ + +
Sbjct: 4 RPTKRIEFTEADGDTEGKSVFQLEKE----------TDKETFKIRDDNP-----WVTVET 48
Query: 66 TGWLSLKQPMDRE------TRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSK 119
G + +K+ D E T D +++ N T V I V D ND P F
Sbjct: 49 NGAVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFIN 108
Query: 120 QD--YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
+ + ++ N P T V +++A D D N + Y ++ T F+++ SG
Sbjct: 109 RPLPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSG 161
Score = 70.1 bits (172), Expect = 6e-15
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDK---FLLKIAA 89
A + I Y L + TF+I P +G + L + +D E + + L + A
Sbjct: 237 KAKSFA---DREIRYTLKAQGQG-AGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA 292
Query: 90 CDNGTPVSTAYATVAINVLDANDN 113
++ ST + I V D NDN
Sbjct: 293 TEDSGGFST-SVDLTIRVTDVNDN 315
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding,
adhesion; 4.50A {Mus musculus}
Length = 322
Score = 132 bits (333), Expect = 5e-38
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
DLD G+ +I Y L D F I TG + + +DRE + ++ L A D
Sbjct: 24 LHTDLDPGS-KKIKYILSGDG--AGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF 80
Query: 93 GTPVS-TAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LAS 148
T + I V D NDN P+F Y ++ E GT V +V ATD D +
Sbjct: 81 ETNKPLEPPSEFIIKVQDINDNAPEFLNGPYHATVPEMSILGTSVTNVTATDADDPVYGN 140
Query: 149 NAALRYSLIPSNTSFQINPFSG 170
+A L YS++ F I P +
Sbjct: 141 SAKLVYSILEGQPYFSIEPETA 162
Score = 129 bits (327), Expect = 4e-37
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTG 67
+ VTA D D D GN+A++ Y +++ F I P T
Sbjct: 125 VTNVTATDAD------------------DPVYGNSAKLVYSILEGQ----PYFSIEPETA 162
Query: 68 WLSLKQP-MDRETRDKFLLKIAACDNG--TPVSTAYATVAINVLDANDNDPKFSKQDYEF 124
+ P MDRE ++++L+ I A D G + + T+ + + D NDN PKF++ Y F
Sbjct: 163 IIKTALPNMDREAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLYHF 222
Query: 125 SIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTSFQINPFS 169
S+ E++ GT +G VKA D+D+ NA Y +I + + F
Sbjct: 223 SVPEDVVLGTAIGRVKANDQDIGENAQSSYDIIDGDGT---ALFE 264
Score = 63.9 bits (156), Expect = 1e-12
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIM----PNTGWLSLKQPMDRETRDKFLLKIA 88
A D D G NA+ +Y +I D F I G + L++P+D ET+ + LK+
Sbjct: 238 KANDQDIGENAQSSYDIIDGD--GTALFEITSDAQAQDGVIRLRKPLDFETKKSYTLKVE 295
Query: 89 ACDNGTPVSTAY-------ATVAINV 107
A + + ATV I V
Sbjct: 296 AANIHIDPRFSSRGPFKDTATVKIVV 321
Score = 44.2 bits (105), Expect = 6e-06
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 122 YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLI--PSNTSFQINPFSG 170
F +EE ++ TD D + ++Y L + T FQIN +G
Sbjct: 6 QMFVLEEFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITG 55
>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding,
extracellular, ECT metal binding protein; HET: NAG NDG;
3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1
b.1.6.1 b.1.6.1
Length = 546
Score = 135 bits (341), Expect = 1e-37
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ + ++ Y + D F I TGW+ + +P+DRE DK++L A
Sbjct: 28 VQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV 87
Query: 91 DNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LA 147
+ INV+D NDN PKF++ + S+ E + GT V +V ATDED +
Sbjct: 88 SENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 147
Query: 148 SNAALRYSLI------PSNTSFQINPFSG 170
N L YS++ P F IN +G
Sbjct: 148 LNGVLSYSILKQDPEEPIPNLFTINRETG 176
Score = 123 bits (312), Expect = 1e-33
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 12/147 (8%)
Query: 33 TAVDLDT-GNNARITYKLIQDDKLVHDTFHIMP----NTGWLSLKQPMDRETRDKFLLKI 87
+ DLD G A I+ ++ F+I N G L+ + +D E R +++L+I
Sbjct: 249 SVTDLDMPGTPAWQAVYKIRVNE--GGFFNITTDPESNQGILTTAKGLDFELRKQYVLQI 306
Query: 88 AACD---NGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDE 144
+ P+ T+ ATV + V D N+ P F + E+L RG + S+ A D
Sbjct: 307 TVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPAVSRVDVSEDLSRGEKIISLVAQDP 365
Query: 145 DLASNAALRYSLIPSNTS-FQINPFSG 170
D L Y + +N +G
Sbjct: 366 DKQQIQKLSYFIGNDPARWLTVNKDNG 392
Score = 120 bits (303), Expect = 2e-32
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 25/166 (15%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDD--KLVHDTFHIMPN 65
++ V+A D D + N ++Y +++ D + + + F I
Sbjct: 133 VMAVSATDEDDNID------------------SLNGVLSYSILKQDPEEPIPNLFTINRE 174
Query: 66 TGWLSLK-QPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEF 124
TG +SL +DRE ++ L + A D + I + DANDN P F + Y
Sbjct: 175 TGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTA 234
Query: 125 SIEENLPRGTVVGSVKATDEDLA-SNAALRYSLIPSNTS--FQINP 167
+ EN G V + TD D+ + A I N F I
Sbjct: 235 LVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 279
Score = 109 bits (274), Expect = 2e-28
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETR----DKFLLKIA 88
A D D +++Y + D + + G ++ +DRE+ + + + +
Sbjct: 361 VAQDPDKQQIQKLSYFIGNDPA---RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 417
Query: 89 ACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS 148
D+G V T T+ ++VLD NDN P S + + + P+ + +D D+
Sbjct: 418 VTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV-----LTISDADIPP 472
Query: 149 NAA-LRYSLIPSN 160
N + SL +
Sbjct: 473 NTYPYKVSLSHGS 485
Score = 60.4 bits (147), Expect = 3e-11
Identities = 12/86 (13%), Positives = 19/86 (22%), Gaps = 5/86 (5%)
Query: 33 TAVDLDTGNNA-RITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACD 91
T D D N L + + G L P + + + + + D
Sbjct: 464 TISDADIPPNTYPYKVSLSHGSD--LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 521
Query: 92 NGTPVSTAYATVAINVLDANDNDPKF 117
V V K
Sbjct: 522 AQNNPQL--TVVNATVCSCEGKAIKC 545
Score = 39.2 bits (92), Expect = 4e-04
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 9/62 (14%)
Query: 115 PKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPF 168
+ + S E P + +K+ + + YS+ P F+I
Sbjct: 6 HDWVIPPIKVSENERGPFPKRLVQIKS---NKDRFNKVYYSITGQGADNPPQGVFRIEWE 62
Query: 169 SG 170
+G
Sbjct: 63 TG 64
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 133 bits (336), Expect = 1e-36
Identities = 45/149 (30%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ + ++ Y + D F I TGW+ + +P+DRE DK++L A
Sbjct: 177 VQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV 236
Query: 91 DNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED---LA 147
+ INV+D NDN PKF++ + S+ E + GT V +V ATDED +
Sbjct: 237 SENGSPVEEPMEITINVIDQNDNRPKFTQDVFRGSVREGVQPGTQVMAVSATDEDDNIDS 296
Query: 148 SNAALRYSLI------PSNTSFQINPFSG 170
N L YS++ P F IN +G
Sbjct: 297 LNGVLSYSILKQDPEEPIPNLFTINRETG 325
Score = 126 bits (318), Expect = 3e-34
Identities = 37/171 (21%), Positives = 65/171 (38%), Gaps = 31/171 (18%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMP--- 64
+ +++ DLD + YK+ ++ F+I
Sbjct: 394 VQRLSVTDLDMPGT-------------------PAWQAVYKIRVNE---GGFFNITTDPE 431
Query: 65 -NTGWLSLKQPMDRETRDKFLLKIAACD---NGTPVSTAYATVAINVLDANDNDPKFSKQ 120
N G L+ + +D E R +++L+I + P+ T+ ATV + V D N+ P F
Sbjct: 432 SNQGILTTAKGLDFELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFFVPA 490
Query: 121 DYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS-FQINPFSG 170
+ E+L RG + S+ A D D L Y + +N +G
Sbjct: 491 VSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 541
Score = 123 bits (309), Expect = 5e-33
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 25/166 (15%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDD--KLVHDTFHIMPN 65
++ V+A D D + N ++Y +++ D + + + F I
Sbjct: 282 VMAVSATDEDDNID------------------SLNGVLSYSILKQDPEEPIPNLFTINRE 323
Query: 66 TGWLSLK-QPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEF 124
TG +SL +DRE ++ L + A D + I + DANDN P F + Y
Sbjct: 324 TGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTYTA 383
Query: 125 SIEENLPRGTVVGSVKATDEDL-ASNAALRYSLIPSNTS--FQINP 167
+ EN G V + TD D+ + A I N F I
Sbjct: 384 LVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNITT 428
Score = 109 bits (275), Expect = 2e-28
Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 13/133 (9%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETR----DKFLLKIA 88
A D D +++Y + D + + G ++ +DRE+ + + + +
Sbjct: 510 VAQDPDKQQIQKLSYFIGNDPA---RWLTVNKDNGIVTGNGNLDRESEYVKNNTYTVIML 566
Query: 89 ACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS 148
D+G V T T+ ++VLD NDN P S + + + P+ + +D D+
Sbjct: 567 VTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVFTMCDQNPEPQV-----LTISDADIPP 621
Query: 149 NAA-LRYSLIPSN 160
N + SL +
Sbjct: 622 NTYPYKVSLSHGS 634
Score = 75.3 bits (185), Expect = 2e-16
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 88 AACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSI-EENLPRGTVVGSVKATDEDL 146
A + V D + P FS +Y FS+ L RG +G V +D
Sbjct: 8 NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCT- 66
Query: 147 ASNAALRYSLIPSNTSFQINP 167
+ Y + ++ F++ P
Sbjct: 67 -TRKHGLYDV--GDSRFRVLP 84
Score = 64.1 bits (156), Expect = 1e-12
Identities = 22/175 (12%), Positives = 49/175 (28%), Gaps = 30/175 (17%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTG 67
+ +V D T + Y + V D V H+ +
Sbjct: 57 LGKVNFSDCTTRKHGL--YDVGDSRFRVLPDGT---------------VLVKRHVKLHKD 99
Query: 68 WL-SLKQPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYE--- 123
++ R + + +A+ + + + + VL + ++ +
Sbjct: 100 TKFTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKKRDWVI 159
Query: 124 --FSIEENLPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPFSG 170
+ EN RG + + + YS+ P F+I +G
Sbjct: 160 PPIKVSENE-RGPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 213
Score = 55.7 bits (134), Expect = 1e-09
Identities = 12/97 (12%), Positives = 21/97 (21%), Gaps = 5/97 (5%)
Query: 33 TAVDLDTGNNA-RITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACD 91
T D D N L + + G L P + + + + + D
Sbjct: 613 TISDADIPPNTYPYKVSLSHGSD--LTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSD 670
Query: 92 NGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEE 128
V V K ++
Sbjct: 671 AQNNPQL--TVVNATVCSCEGKAIKCQEKLVGGFDLP 705
>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}
Length = 419
Score = 130 bits (328), Expect = 2e-36
Identities = 31/173 (17%), Positives = 62/173 (35%), Gaps = 27/173 (15%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTG 67
++ + D + ++L + T+K+ + + + G
Sbjct: 11 TKRIEFTEADGDTEGKSVFQL----------EKETDKETFKI-----RDDNPWVTVETNG 55
Query: 68 WLSLKQPMDRETRDK------FLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQD 121
+ +K+ D E +++ N T V I V D ND P F +
Sbjct: 56 AVRVKKKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP 115
Query: 122 --YEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
+ ++ N P T V +++A D D N + Y ++ T F+++ SG
Sbjct: 116 LPMQAVVQLNAPPNTPVFTLQARDPDTDHN--IHYFIVRDRTGGRFEVDERSG 166
Score = 118 bits (299), Expect = 2e-32
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 15/145 (10%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
A D DT +N I Y +++D F + +G + + + +++L + A D
Sbjct: 136 QARDPDTDHN--IHYFIVRDR--TGGRFEVDERSGVVRTRGTDLFQLDMEYVLYVKAEDQ 191
Query: 93 GTPVS----TAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLAS 148
V + ++++ P+F YE I EN + + + S+KA
Sbjct: 192 NGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSYEAEIPENQKKDSDIISIKAKSFA--- 247
Query: 149 NAALRYSL---IPSNTSFQINPFSG 170
+ +RY+L +F I P SG
Sbjct: 248 DREIRYTLKAQGQGAGTFNIGPTSG 272
Score = 115 bits (291), Expect = 3e-31
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFL---LKIAA 89
A + I Y ++ TF+I P +G + L + +D E + L + A
Sbjct: 242 KAKSFA---DREIRYT-LKAQGQGAGTFNIGPTSGIVKLAKELDFEDLRQPHVYSLIVTA 297
Query: 90 CDNGTPVSTAYATVAINVLDANDNDPKFSKQDYE-FSIEENLPRGTVVGSVKATDEDLAS 148
++ ST + I V D NDN PKF DY+ +++E++P GT + VKA D D S
Sbjct: 298 TEDSGGFST-SVDLTIRVTDVNDNAPKFELPDYQAHNVDEDIPLGTSILRVKAMDSDSGS 356
Query: 149 NAALRYSLIPSNTSFQINP 167
NA + Y + + F ++
Sbjct: 357 NAEIEYLVSDDH--FAVDS 373
Score = 66.6 bits (163), Expect = 2e-13
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 29/103 (28%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTG 67
IL+V A+D D+G+NA I Y + D AVD + G
Sbjct: 344 ILRVKAMDSDSGSNAEIEYLVSDDHFAVD----------------------------SNG 375
Query: 68 WLSLKQPMDRET-RDKFLLKIAACDNGTPVSTAYATVAINVLD 109
+ + +D + + + A D G P + ATV + +
Sbjct: 376 IIVNNKQLDADNNNAYYEFIVTAKDKGEPPKSGVATVRVYTKN 418
Score = 34.6 bits (80), Expect = 0.012
Identities = 5/51 (9%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 126 IEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSGKKSI 174
+ + + + T+ D + + L F+I + ++
Sbjct: 4 VTRAVRPTKRI---EFTEADGDTEGKSVFQLEKETDKETFKIRDDNPWVTV 51
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 115 bits (289), Expect = 2e-32
Identities = 25/166 (15%), Positives = 49/166 (29%), Gaps = 28/166 (16%)
Query: 33 TAVDLDTGNNARITYKLIQDDKL---VHDTFHIMPNTGWLSLKQPMDRETRDKFLLK--- 86
+ + R+ L + ++ I +TG L L++ +D + +K ++
Sbjct: 28 LRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEKLSVRNRG 87
Query: 87 -----------IAACDNGTPVSTAYATVAINVLDANDNDP----------KFSKQDYEFS 125
++ + N + P F + F
Sbjct: 88 FPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRPSFR 147
Query: 126 IEENLPRGTVVGSVKATDEDLASNAALRYSLI-PSNTSFQINPFSG 170
I EN P GT + L ++ Y L+ F+ P S
Sbjct: 148 IRENRPPGTFHQFRLLPVQFLCPQISVAYRLLEGEGLPFRSAPDSL 193
Score = 91.5 bits (227), Expect = 3e-23
Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKI-AACD 91
+ Y+L++ + F P++ +S + +DRE R+K+ L
Sbjct: 162 LLPVQFLCPQISVAYRLLEGE---GLPFRSAPDSLEVSTRWALDREQREKYELVAVCTVH 218
Query: 92 NGTPVSTAYATVAINVLDANDNDPKFS 118
G + V D +D+ P+F
Sbjct: 219 AGAREEVVMVPFPVTVYDEDDSAPEFE 245
Score = 51.1 bits (122), Expect = 2e-08
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 117 FSKQDYEFSIEENLPRGTVVGSVKAT--DEDLASNAALRYSLIPS-------NTSFQINP 167
FS+ Y + + GT + V A + + L L + N +I
Sbjct: 3 FSRDAYWEKLYVDQAAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQE 62
Query: 168 FSG 170
+G
Sbjct: 63 DTG 65
>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP:
b.1.6.1 PDB: 1nch_A 1nci_A
Length = 110
Score = 95.4 bits (238), Expect = 4e-26
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ N + Y + D+ F I P +G LS+ +P+DRE +F L+ A
Sbjct: 24 VRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 83
Query: 91 DNGTPVSTAYATVAINVLDANDNDPKF 117
D + INV+D NDN P+F
Sbjct: 84 DINGNQVENPIDIVINVIDMNDNRPEF 110
Score = 45.0 bits (107), Expect = 8e-07
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 124 FSIEENLPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPFSG 170
++ EN G + N +LRYS+ P F INP SG
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISG 60
>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 123
Score = 91.6 bits (228), Expect = 1e-24
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 36 DLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNG 93
DL +ITYK + F +TG L++ +DRE FLL A D
Sbjct: 37 DLAEERGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDREETPFFLLTGYALDAR 96
Query: 94 TPVSTAYATVAINVLDANDNDPKFSK 119
+ I VLD NDN+P F++
Sbjct: 97 GNNVEKPLELRIKVLDINDNEPVFTQ 122
Score = 38.9 bits (91), Expect = 1e-04
Identities = 8/55 (14%), Positives = 16/55 (29%), Gaps = 9/55 (16%)
Query: 124 FSIEEN--LPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPFSG 170
++ E L + + + +D + Y P F N +G
Sbjct: 17 VALREGEDLSKKNPIAKIH-SDLAEERGLKITYKYTGKGITEPPFGIFVFNKDTG 70
>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 119
Score = 90.6 bits (226), Expect = 3e-24
Identities = 30/83 (36%), Positives = 41/83 (49%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
A DLD G N +I Y + V + +GWLS+ +DRE ++ + A D
Sbjct: 37 RAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFTVMARDR 96
Query: 93 GTPVSTAYATVAINVLDANDNDP 115
G P T ATV +N+ D NDN P
Sbjct: 97 GQPPKTDKATVVLNIKDENDNVP 119
Score = 79.4 bits (197), Expect = 7e-20
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 105 INVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS-- 162
+ NDN P+F K YE + EN GT + ++A D D+ N + Y + S
Sbjct: 2 SSGSSGNDNSPRFEKSVYEADLAENSAPGTPILQLRAADLDVGVNGQIEYVFGAATESVR 61
Query: 163 --FQINPFSG 170
+++ SG
Sbjct: 62 RLLRLDETSG 71
>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like
domain, adhesi protein, cell invasion-cell adhesion
complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B
2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B
Length = 105
Score = 79.3 bits (196), Expect = 5e-20
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ + ++ Y + D F I TGWL + +P+DRE + L A
Sbjct: 26 VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV 85
Query: 91 DNGTPVSTAYATVAINVLD 109
+ + I V D
Sbjct: 86 SSNGNAVEDPMEILITVTD 104
Score = 47.0 bits (112), Expect = 1e-07
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 115 PKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLI------PSNTSFQINPF 168
P S S EN G ++ + + YS+ P F I
Sbjct: 2 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 60
Query: 169 SG 170
+G
Sbjct: 61 TG 62
>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR
of basic residues, glycoprotein, GPI-anchor,
lipoprotein, membrane; 1.81A {Mus musculus}
Length = 100
Score = 78.9 bits (195), Expect = 7e-20
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
D G+ R+T K + D+ TF I NTG +S+ + +DRET + L + D
Sbjct: 26 VDSDRPEGSKFRLTGKGV--DQDPKGTFRINENTGSVSVTRTLDRETIATYQLYVETTDA 83
Query: 93 GTPVSTAYATVAINVLD 109
+ + V+D
Sbjct: 84 SGKTLEGPVPLEVIVID 100
Score = 43.9 bits (104), Expect = 2e-06
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 124 FSIEEN--LPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
I EN P VG V +D S L + + F+IN +G
Sbjct: 8 ILIPENQRQPFPRDVGKVVDSDRPEGSKFRLTGKGVDQDPKGTFRINENTG 58
>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A
Length = 99
Score = 78.9 bits (195), Expect = 7e-20
Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 27 KLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLK 86
K++ D G+ ++ K + D+ F I N+G +S+ + +DRE + L+
Sbjct: 19 KIVGRVVVSDRIPGSKIKLYGKGV--DQEPKGIFKINENSGEVSVTKALDREAIPSYQLQ 76
Query: 87 IAACDNGTPVSTAYATVAINVLD 109
+ D + I V+D
Sbjct: 77 VETTDENGKTIEGPVDLEILVID 99
Score = 44.3 bits (105), Expect = 1e-06
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 124 FSIEENL--PRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
SI EN P +VG V +D S L + F+IN SG
Sbjct: 7 ISIPENQRIPFPKIVGRVVVSDRIPGSKIKLYGKGVDQEPKGIFKINENSG 57
>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 114
Score = 78.3 bits (194), Expect = 2e-19
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 105 INVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSL---IPSNT 161
+ NDN P F + E I EN P GT V + ATD D+ SNA +RY + T
Sbjct: 2 SSGSSGNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPAT 61
Query: 162 S--FQINPFSG 170
F +N +G
Sbjct: 62 KRLFALNNTTG 72
Score = 72.1 bits (178), Expect = 4e-17
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 33 TAVDLDTGNNARITYKLIQD-DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACD 91
A D D G+NA I Y F + TG +++++ +DRE + + A D
Sbjct: 37 HATDADIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASD 96
Query: 92 NGTPVSTAYATVAINVLDAN 111
+ A ATV INV D N
Sbjct: 97 GSST--PARATVTINVTDVN 114
>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell
membrane, cleavage on PAIR of basic residues,
glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus
gallus}
Length = 99
Score = 72.5 bits (178), Expect = 2e-17
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
+ G R++ K + D+ F I +G +S+ +P+DRE + L++ D
Sbjct: 25 IRSEGTEGAKFRLSGKGV--DQDPKGIFRINEISGDVSVTRPLDREAIANYELEVEVTDL 82
Query: 93 GTPVSTAYATVAINVLD 109
+ + I+V+D
Sbjct: 83 SGKIIDGPVRLDISVID 99
Score = 42.4 bits (100), Expect = 6e-06
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 122 YEFSIEENL--PRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSGK 171
I EN P VG V ++ + L + + F+IN SG
Sbjct: 5 TPILIPENQRPPFPRSVGKVIRSEGTEGAKFRLSGKGVDQDPKGIFRINEISGD 58
>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}
Length = 99
Score = 67.0 bits (164), Expect = 3e-15
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 21 NARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETR 80
T L D+D G+ I Y L + F I TG + Q +DRE R
Sbjct: 13 EYTGTDPLYVGKLHSDMDRGDG-SIKYILSGEG--AGIVFTIDDTTGDIHAIQRLDREER 69
Query: 81 DKFLLKIAACDNGTPVS-TAYATVAINVLD 109
++ L+ A D T + I + D
Sbjct: 70 SQYTLRAQALDRRTGRPMEPESEFIIKIQD 99
Score = 38.5 bits (90), Expect = 1e-04
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 124 FSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS--FQINPFSG 170
F +EE + +D D + +++Y L F I+ +G
Sbjct: 9 FVLEEYTGTDPLYVGKLHSDMD-RGDGSIKYILSGEGAGIVFTIDDTTG 56
>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB:
2a4c_A
Length = 98
Score = 65.1 bits (159), Expect = 2e-14
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
DLD G+ +I Y L D F I TG + + +DRE + ++ L A D
Sbjct: 24 LHTDLDPGSK-KIKYILSGDG--AGTIFQINDITGDIHAIKRLDREEKAEYTLTAQAVDF 80
Query: 93 GTPVS-TAYATVAINVLD 109
T + I V D
Sbjct: 81 ETNKPLEPPSEFIIKVQD 98
Score = 38.2 bits (89), Expect = 2e-04
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 124 FSIEENLPRGTVVGSVKATDEDLASNAALRYSLIP--SNTSFQINPFSG 170
F +EE ++ TD D + ++Y L + T FQIN +G
Sbjct: 8 FVLEEFSGPEPILVGRLHTDLD-PGSKKIKYILSGDGAGTIFQINDITG 55
>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken
structural genomics/proteomics initiative, RSGI, NPPSFA;
NMR {Mus musculus}
Length = 125
Score = 38.0 bits (89), Expect = 3e-04
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 19/77 (24%)
Query: 60 FHIMPNTGWLSLKQPMDRETRDKFLLKIAACDNGTPVSTAYATVAIN----------VLD 109
+ +G L LK+ +DRE L C + P + + + + D
Sbjct: 57 LQLEQKSGNLLLKEKLDREE----L-----CGSTNPCILHFQVLLKSPVQFIQGEIQLQD 107
Query: 110 ANDNDPKFSKQDYEFSI 126
ND+ P+F + + S
Sbjct: 108 VNDHAPEFMEDESGPSS 124
Score = 28.4 bits (64), Expect = 0.78
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 124 FSIEENLPRGTVVGSVKATD-----EDLASNAALRYSLIPSNTSFQINPFSGKKSILYLH 178
+S+ E RG++VG++ A D +L + A + + Q+ SG L L
Sbjct: 15 YSVLEETDRGSLVGNL-AKDLGLSLRELITRGA-QILSKGNKQLLQLEQKSG---NLLLK 69
Query: 179 SVI 181
+
Sbjct: 70 EKL 72
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.020
Identities = 26/135 (19%), Positives = 41/135 (30%), Gaps = 43/135 (31%)
Query: 82 KFLLKI-AACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYEFSIEENLPRGTVVGSVK 140
L I C P ++ ++ + L+ N+ P SI NL + V V
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-----SPMLSIS-NLTQEQVQDYVN 354
Query: 141 ATDEDLASNAALRYSLI--PSN----------TSFQIN---------------PFSGKK- 172
T+ L + + SL+ N + PFS +K
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 173 --SILYL------HS 179
S +L HS
Sbjct: 415 KFSNRFLPVASPFHS 429
Score = 31.9 bits (72), Expect = 0.12
Identities = 21/96 (21%), Positives = 33/96 (34%), Gaps = 21/96 (21%)
Query: 100 YAT--VAINVLDANDNDPKFSKQDYEFSIEE---NLPRGTVVGSVKATDEDLASN-AALR 153
Y T A +V + D K Y FSI + N P + + + N +A+
Sbjct: 1636 YKTSKAAQDVWNRAD---NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 154 YSLIPSNTS-----FQ-INP------FSGKKSILYL 177
+ I F+ IN F +K +L
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA 1728
Score = 30.8 bits (69), Expect = 0.25
Identities = 17/119 (14%), Positives = 33/119 (27%), Gaps = 36/119 (30%)
Query: 74 PMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLD------------ANDNDPKFSKQD 121
P D R + + A + G ++ V++ N N ++Q
Sbjct: 1798 PRDELGRSNY--GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE--NQQ- 1852
Query: 122 YEFSIEENLPRGTVV-GSVKATD---EDLASNAALRYSLIPSNTSFQINPFSGKKSILY 176
V G ++A D L + +I S + + L+
Sbjct: 1853 ------------YVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV---EGHLF 1896
Score = 30.0 bits (67), Expect = 0.52
Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 41/122 (33%)
Query: 9 LQVTAVDLDTGNNAR-----ITYKLIQDDT--AVDLDTGNNARITYKLIQDDKLVHDTFH 61
+Q+ D G++ R I+ +++ V +T + T H
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT--------------H 500
Query: 62 IM---PNTGWLSLKQPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFS 118
I+ P G S + +D GT V A LD N +D
Sbjct: 501 ILDFGP--GGASGLGVLTHRNKD-----------GTGVRVIVAGT----LDINPDDDYGF 543
Query: 119 KQ 120
KQ
Sbjct: 544 KQ 545
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 28.2 bits (64), Expect = 1.5
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDD 32
IL V+AVD TG +IT I +D
Sbjct: 485 ILNVSAVDKSTGKENKIT---ITND 506
>1vmi_A Putative phosphate acetyltransferase; NP_416953.1, structura
genomics, JCSG, protein structure initiative, PSI, joint
CE structural genomics; 2.32A {Escherichia coli} SCOP:
c.77.1.5
Length = 355
Score = 27.9 bits (63), Expect = 2.0
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 15 DLDTGNNARITYKLIQ 30
L+ GN I YK+ Q
Sbjct: 281 SLEAGN---IGYKIAQ 293
Score = 27.9 bits (63), Expect = 2.0
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 36 DLDTGNNARITYKLIQ 51
L+ GN I YK+ Q
Sbjct: 281 SLEAGN---IGYKIAQ 293
>2af4_C Phosphate acetyltransferase; PTA dimer with one COA ligand bound
PER monomer, acyltransferase; HET: COA; 2.15A
{Methanosarcina thermophila} SCOP: c.77.1.5 PDB: 1qzt_A*
2af3_C*
Length = 333
Score = 27.9 bits (63), Expect = 2.1
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
Query: 15 DLDTGNNARITYKLIQ 30
DL+ GN I YK+ Q
Sbjct: 274 DLNCGN---IAYKIAQ 286
Score = 27.9 bits (63), Expect = 2.1
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
Query: 36 DLDTGNNARITYKLIQ 51
DL+ GN I YK+ Q
Sbjct: 274 DLNCGN---IAYKIAQ 286
>1r5j_A Putative phosphotransacetylase; lactate dehydrogenase-like
nucleotide-binding fold, structural genomics, BSGC
structure funded by NIH; 2.70A {Streptococcus pyogenes}
SCOP: c.77.1.5
Length = 337
Score = 27.5 bits (62), Expect = 2.2
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
Query: 15 DLDTGNNARITYKLIQ 30
DL +GN I YK+ Q
Sbjct: 278 DLQSGN---IGYKIAQ 290
Score = 27.5 bits (62), Expect = 2.2
Identities = 8/16 (50%), Positives = 10/16 (62%), Gaps = 3/16 (18%)
Query: 36 DLDTGNNARITYKLIQ 51
DL +GN I YK+ Q
Sbjct: 278 DLQSGN---IGYKIAQ 290
>1td9_A Phosphate acetyltransferase; structural genomics, BSGC structure
funded by NIH, protein structure initiative, PSI; 2.75A
{Bacillus subtilis} SCOP: c.77.1.5 PDB: 1xco_A
Length = 329
Score = 27.5 bits (62), Expect = 2.4
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 15 DLDTGNNARITYKLIQ 30
L+ GN I YK+ Q
Sbjct: 274 SLEAGN---IGYKIAQ 286
Score = 27.5 bits (62), Expect = 2.4
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 36 DLDTGNNARITYKLIQ 51
L+ GN I YK+ Q
Sbjct: 274 SLEAGN---IGYKIAQ 286
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB,
DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A
{Staphylococcus aureus}
Length = 70
Score = 25.9 bits (56), Expect = 2.5
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 116 KFSKQDYE--FSIEENLPRGTVVGSVK 140
K K+DY F EN+PRGT ++
Sbjct: 30 KIKKEDYPQIFDFLENVPRGTKTAHIR 56
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 27.2 bits (61), Expect = 2.5
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDD 32
IL V+A D TG + RIT IQ++
Sbjct: 94 ILNVSAEDKSTGKSNRIT---IQNE 115
>4e4r_A Phosphate acetyltransferase; structural genomics, EUTD, center for
structural genomics of infectious diseases, csgid; HET:
TRS; 1.44A {Staphylococcus aureus subsp}
Length = 331
Score = 27.5 bits (62), Expect = 2.5
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 15 DLDTGNNARITYKLIQ 30
L+ GN I YK+ Q
Sbjct: 275 SLEAGN---IGYKIAQ 287
Score = 27.5 bits (62), Expect = 2.5
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 3/16 (18%)
Query: 36 DLDTGNNARITYKLIQ 51
L+ GN I YK+ Q
Sbjct: 275 SLEAGN---IGYKIAQ 287
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 26.8 bits (60), Expect = 2.7
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDD 32
IL V+A D TGN ++T I +D
Sbjct: 94 ILHVSAEDKGTGNKNKLT---ITND 115
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 26.8 bits (60), Expect = 2.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 8 ILQVTAVDLDTGNNARITYKLIQDD 32
IL+V+A D TG + IT I +D
Sbjct: 94 ILKVSATDKGTGKSESIT---ITND 115
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 27.3 bits (60), Expect = 2.8
Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 17 DTGNNARITYKLIQDDTAVDLDTGNNARIT----------------YKLIQDDKLVHDTF 60
GN+A I D + + + ++++ +L +T
Sbjct: 277 SDGNDAAIKLNYHAKDVYIVVGGTGTLTVVRDGKPATLPISGPPTTHQVVAGYRLASETL 336
Query: 61 HIMPNTG 67
+ P+ G
Sbjct: 337 EVRPSKG 343
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5'
exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB:
3cm5_A 3cm6_A
Length = 308
Score = 26.9 bits (59), Expect = 4.3
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 34 AVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKF 83
A+D D N A I ++I V + W ++E R F
Sbjct: 191 AMD-DCLNIATILQRMINMGAKVTVNELLTCCASWRRQPLVYNKEWRSSF 239
>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin,
cell adhesion; NMR {Mus musculus}
Length = 103
Score = 25.6 bits (57), Expect = 5.0
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 124 FSIEENLPRGTVVGSVKATD-----EDLASNAALRYSLIPSNTSFQINPFSGKKSILYLH 178
+SI E GT VG + A D +L R + ++N +G IL+++
Sbjct: 7 YSIPEEAKHGTFVGRI-AQDLGLELTELVPRLF-RVASKDRGDLLEVNLQNG---ILFVN 61
Query: 179 SVI 181
S I
Sbjct: 62 SRI 64
Score = 25.2 bits (56), Expect = 6.4
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 60 FHIMPNTGWLSLKQPMDRE 78
+ G L + +DRE
Sbjct: 49 LEVNLQNGILFVNSRIDRE 67
>3pij_A Beta-fructofuranosidase; five-bladed beta-propeller and
beta-sandwich domains, glycos hydrolase family 32,
probiotic bacteria, fructose; HET: FRU; 1.80A
{Bifidobacterium longum} PDB: 3pig_A*
Length = 526
Score = 26.6 bits (59), Expect = 5.3
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 32 DTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWL 69
D A +L ++++ + +HI N GW+
Sbjct: 16 DHAAELAKAEAGVAEMAAKRNNRW-YPKYHIASNGGWI 52
>2o6y_A Putative histidine ammonia-lyase; methylidene imidazolone
prosthetic group; HET: MDO; 1.50A {Rhodobacter
sphaeroides} PDB: 2o7b_A* 2o7d_A* 2o7e_A* 2o78_A*
2o7f_A*
Length = 521
Score = 26.8 bits (60), Expect = 5.3
Identities = 6/21 (28%), Positives = 7/21 (33%), Gaps = 2/21 (9%)
Query: 92 NGTPVSTAYATVAINVLDAND 112
NGT T A +N
Sbjct: 201 NGTSAMTGIA--LVNAHACRH 219
>3unv_A ADMH; MIO, lyase; HET: KWS SFE PHE; 1.54A {Pantoea agglomerans}
Length = 547
Score = 26.5 bits (59), Expect = 5.5
Identities = 3/21 (14%), Positives = 5/21 (23%), Gaps = 2/21 (9%)
Query: 92 NGTPVSTAYATVAINVLDAND 112
NGT + +
Sbjct: 218 NGTSAMVGLG--VLLYDEVKR 236
>1y2m_A Phenylalanine ammonia-lyase; alpha helices; HET: MSE; 1.60A
{Rhodosporidium toruloides} PDB: 1t6j_A* 1t6p_A*
Length = 716
Score = 26.6 bits (59), Expect = 6.0
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 92 NGTPVSTAYATVAINVLDAND 112
NGT VS + A + + DA+
Sbjct: 270 NGTAVSASMA--TLALHDAHM 288
>2qve_A Tyrosine aminomutase; MIO, enediyne, transferase; HET: MDO 247;
2.00A {Streptomyces globisporus} PDB: 2rjr_A* 2rjs_A*
2ohy_A* 3kdz_A* 3kdy_A*
Length = 526
Score = 26.5 bits (59), Expect = 6.8
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 2/21 (9%)
Query: 92 NGTPVSTAYATVAINVLDAND 112
NGT T ++ V A +
Sbjct: 192 NGTSGMTGLG--SLVVGRALE 210
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 26.0 bits (58), Expect = 7.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 8 ILQVTAVDLDTGNNARITYK 27
+L VTA++ TG A I K
Sbjct: 92 LLSVTAMEKSTGVEASIQVK 111
>4a1r_A LIP; membrane protein, T6SS, beta-sandwich; 1.92A {Serratia
marcescens}
Length = 149
Score = 25.7 bits (56), Expect = 8.3
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 48 KLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETR 80
++ + L D F + P L + R
Sbjct: 58 SVLGNSLLDSDQFFLTPGQTGKKLGGQSALDAR 90
>2x3j_A ACSD; alcaligin biosynthesis, ligase, ALCC, adenylation, sideropho
iron acquisition; HET: ATP X3J; 2.00A {Erwinia
chrysanthemi} PDB: 2w03_A* 2w04_A* 2w02_A* 2x3k_A*
3ffe_A
Length = 620
Score = 26.2 bits (57), Expect = 8.5
Identities = 9/69 (13%), Positives = 17/69 (24%), Gaps = 3/69 (4%)
Query: 49 LIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC---DNGTPVSTAYATVAI 105
L+ G +S E + + +N + A ++
Sbjct: 325 LLDQHADTLGGLVAAAEPGVVSWSPAAAGELDSHWFREQTGGILRENFCRRTGAERSIMA 384
Query: 106 NVLDANDND 114
L A D
Sbjct: 385 GTLFARGVD 393
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 25.9 bits (56), Expect = 9.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 85 LKIAACDNGTPVSTAYATVAINV 107
+ + DNG+P AY V INV
Sbjct: 414 ILLTLRDNGSPNLYAYRRVVINV 436
>1gkm_A Histidase, HAL, histidine ammonia-lyase; histidine degradation;
HET: MDO; 1.0A {Pseudomonas putida} SCOP: a.127.1.2 PDB:
1b8f_A* 1gkj_A* 1eb4_A* 1gk3_A 1gk2_A
Length = 507
Score = 26.0 bits (58), Expect = 9.9
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 92 NGTPVSTAYATVAINVLDAND 112
NGT STAYA + A D
Sbjct: 193 NGTQASTAYA--LRGLFYAED 211
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.385
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,656,932
Number of extensions: 147511
Number of successful extensions: 547
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 119
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.4 bits)