RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8617
(184 letters)
>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 62.8 bits (152), Expect = 5e-14
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ + ++ Y + D F I TGWL + +P+DRE + L A
Sbjct: 25 VQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRERIATYTLFSHAV 84
Query: 91 DNGTPVSTAYATVAINVLD 109
+ + I V D
Sbjct: 85 SSNGNAVEDPMEILITVTD 103
Score = 40.9 bits (95), Expect = 8e-06
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 7/65 (10%)
Query: 115 PKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS------FQINPF 168
P S S EN G ++ + + YS+ F I
Sbjct: 1 PLGSWVIPPISCPENEK-GPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERE 59
Query: 169 SGKKS 173
+G
Sbjct: 60 TGWLK 64
>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 100
Score = 60.6 bits (146), Expect = 3e-13
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ + ++ Y + D F I TGW+ + +P+DRE DK++L A
Sbjct: 22 VQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDREEYDKYVLSSHAV 81
Query: 91 DNGTPVSTAYATVAINVLD 109
+ INV+D
Sbjct: 82 SENGSPVEEPMEITINVID 100
Score = 40.9 bits (95), Expect = 7e-06
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 7/53 (13%)
Query: 124 FSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS------FQINPFSG 170
+ EN G + + + YS+ F+I +G
Sbjct: 7 IKVSENER-GPFPKRLVQIKSNKDRFNKVYYSITGQGADNPPQGVFRIEWETG 58
>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 57.2 bits (137), Expect = 7e-12
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
Query: 33 TAVDLDTGNNARITYKLIQD--DKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAAC 90
+ N + Y + D+ F I P +G LS+ +P+DRE +F L+ A
Sbjct: 24 VRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAV 83
Query: 91 DNGTPVSTAYATVAINVLD 109
D + INV+D
Sbjct: 84 DINGNQVENPIDIVINVID 102
Score = 36.0 bits (82), Expect = 5e-04
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 124 FSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS------FQINPFSG 170
++ EN G + N +LRYS+ F INP SG
Sbjct: 9 INLPENSR-GPFPQELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISG 60
>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 52.3 bits (124), Expect = 5e-10
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 28 LIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRET----RDKF 83
I A D D +++Y + D + + G ++ +DRE+ + +
Sbjct: 24 KIISLVAQDPDKQQIQKLSYFIGNDP---ARWLTVNKDNGIVTGNGNLDRESEYVKNNTY 80
Query: 84 LLKIAACDNGTPVSTAYATVAINVLD 109
+ + D+G V T T+ ++VLD
Sbjct: 81 TVIMLVTDDGVSVGTGTGTLILHVLD 106
Score = 41.5 bits (96), Expect = 5e-06
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 112 DNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTS-FQINPFSG 170
+ P F + E+L RG + S+ A D D L Y + +N +G
Sbjct: 1 NEAPFFVPAVSRVDVSEDLSRGEKIISLVAQDPDKQQIQKLSYFIGNDPARWLTVNKDNG 60
>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 136
Score = 47.7 bits (112), Expect = 5e-08
Identities = 7/75 (9%), Positives = 20/75 (26%)
Query: 109 DANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNTSFQINPF 168
+ F + Y + +++ G + +VK ++ + S +
Sbjct: 5 EIALCKTGFPEDVYSAVLPKDVHEGQPLLNVKFSNCNRKRKVQYESSEPADFKVDEDGTV 64
Query: 169 SGKKSILYLHSVIHM 183
+S
Sbjct: 65 YAVRSFPLTAEQAKF 79
>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 44.6 bits (104), Expect = 4e-07
Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 110 ANDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDEDLASNAALRYSLIPSNT-----SFQ 164
ANDN P F + Y + EN G V + TD D+ A + +
Sbjct: 1 ANDNAPIFDPKTYTALVPENEI-GFEVQRLSVTDLDMPGTPAWQAVYKIRVNEGGFFNIT 59
Query: 165 INPFSGKKSILYLHSVIHM 183
+P S + + +
Sbjct: 60 TDPESNQGILTTAKGLDFE 78
Score = 36.1 bits (82), Expect = 4e-04
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 36 DLDTGNNARITYKLIQDDKLVHDTFHIMPNTGW--LSLKQPMDRETRDKFLLKIAACDN- 92
G A I+ ++ P + L+ + +D E R +++L+I +
Sbjct: 34 LDMPGTPAWQAVYKIRVNEGGFFNITTDPESNQGILTTAKGLDFELRKQYVLQITVENAE 93
Query: 93 --GTPVSTAYATVAINVLD 109
P+ T+ ATV + V D
Sbjct: 94 PFSVPLPTSTATVTVTVED 112
>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 43.2 bits (100), Expect = 2e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 111 NDNDPKFSKQDYEFSIEENLPRGTVVGSVKATD 143
NDN P+F Q + S+ E GT V +V A D
Sbjct: 1 NDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAID 33
Score = 34.7 bits (78), Expect = 0.002
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 52 DDKLVHDTFHIMPNTGWLSL-KQPMDRETRDKFLLKIAACDNGTPVS---TAYATVAINV 107
+ F I TG + +DRE ++ L I A D + + AT I V
Sbjct: 53 PSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITV 112
Query: 108 LD 109
D
Sbjct: 113 TD 114
>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 113
Score = 42.7 bits (99), Expect = 2e-06
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 51 QDDKLVHDTFHIMPNTGWLS-LKQPMDRETRDKFLLKIAACDNGTPVSTAYATVAINVLD 109
++ + + F I TG +S + +DRE ++ L + A D + I + D
Sbjct: 54 DPEEPIPNLFTINRETGVISLIGTGLDREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113
Score = 41.6 bits (96), Expect = 5e-06
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 111 NDNDPKFSKQDYEFSIEENLPRGTVVGSVKATD 143
NDN PKF++ + S+ E + GT V +V ATD
Sbjct: 2 NDNRPKFTQDVFRGSVREGVQPGTQVMAVSATD 34
>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 112
Score = 42.4 bits (98), Expect = 3e-06
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 111 NDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDE---DLASNAALRYSLIPSNTSFQINP 167
NDN P+F+++ +E S+ E GT V V ATD NAA+ Y+++ +
Sbjct: 1 NDNRPEFTQEVFEGSVAEGAVPGTSVMKVSATDADDDVNTYNAAIAYTIVSQDPELPHKN 60
Query: 168 FSGKKSILYLHSVIHM 183
+ SV+
Sbjct: 61 MFTVNRDTGVISVLTS 76
Score = 41.6 bits (96), Expect = 5e-06
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 38 DTGNNARITYKLIQDDKLVHD--TFHIMPNTGWLSLKQ-PMDRETRDKFLLKIAACDNGT 94
NA I Y ++ D + F + +TG +S+ +DRE+ + L + A D
Sbjct: 38 VNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQG 97
Query: 95 PVSTAYATVAINVLD 109
+ A I V D
Sbjct: 98 EGLSTTAKAVITVKD 112
>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed
frog (Xenopus laevis) [TaxId: 8355]}
Length = 107
Score = 37.7 bits (86), Expect = 1e-04
Identities = 11/83 (13%), Positives = 19/83 (22%), Gaps = 3/83 (3%)
Query: 33 TAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRDKFLLKIAACDN 92
T D D YK+ + + G L P + + + + + D
Sbjct: 25 TISDAD-IPPNTYPYKVSLSHGSDLTWKAELDSKGTSMLLSPTQQLKKGDYSIYVLLSDA 83
Query: 93 GTPVSTAYATVAINVLDANDNDP 115
V V
Sbjct: 84 QNNPQLT--VVNATVCSCEGKAI 104
Score = 28.1 bits (61), Expect = 0.32
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 111 NDNDPKFSKQDYEFSIEENLPRGTVVGSVKATDED 145
NDN P S F++ + P V + +D D
Sbjct: 1 NDNGPVPSP--RVFTMCDQNPEPQV---LTISDAD 30
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 27.2 bits (60), Expect = 0.71
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 8 ILQVTAVDLDTGNNARIT 25
IL V+A D ++G +IT
Sbjct: 95 ILHVSAKDKNSGKEQKIT 112
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 25.4 bits (55), Expect = 2.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 7 QILQVTAVDLDTGNNARIT 25
+L VTA++ TG A I
Sbjct: 91 GLLSVTAMEKSTGVEASIQ 109
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 149
Score = 23.9 bits (51), Expect = 9.9
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 10/102 (9%)
Query: 22 ARITYKLIQDDTAVDLDTGNNARITYKLIQDDKLVHDTFHIMPNTGWLSLKQPMDRETRD 81
A+ K I+DD + L TG+ KL+ + + + + +
Sbjct: 11 AKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKL------KRGEISDIVGVPTSYQAKLLA 64
Query: 82 KFLLKIAACDNGTPVSTAYATVAINVLDANDNDPKFSKQDYE 123
A + VA++ D D + K
Sbjct: 65 IEHDIPIASLD----QVDAIDVAVDGADEVDPNLNLIKGRGA 102
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.385
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 636,890
Number of extensions: 27091
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 24
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.5 bits)